Multiple sequence alignment - TraesCS7B01G038700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G038700 chr7B 100.000 3481 0 0 1 3481 37608009 37604529 0.000000e+00 6429.0
1 TraesCS7B01G038700 chr7B 96.782 3170 81 7 4 3161 67107128 67103968 0.000000e+00 5269.0
2 TraesCS7B01G038700 chr7B 93.918 1677 67 18 894 2546 37423236 37421571 0.000000e+00 2499.0
3 TraesCS7B01G038700 chr7B 92.389 854 59 6 4 854 37424084 37423234 0.000000e+00 1212.0
4 TraesCS7B01G038700 chr7B 80.966 683 114 13 1063 1734 38783120 38783797 8.560000e-146 527.0
5 TraesCS7B01G038700 chr7B 80.640 687 109 16 1063 1734 38660360 38659683 8.620000e-141 510.0
6 TraesCS7B01G038700 chr7B 76.415 636 124 21 1080 1705 36918619 36919238 1.560000e-83 320.0
7 TraesCS7B01G038700 chr7B 81.285 358 46 13 2105 2461 38659316 38658979 1.590000e-68 270.0
8 TraesCS7B01G038700 chr7B 79.592 147 27 1 2061 2204 39382700 39382554 6.150000e-18 102.0
9 TraesCS7B01G038700 chr7D 92.540 1689 96 11 911 2585 88180362 88178690 0.000000e+00 2394.0
10 TraesCS7B01G038700 chr7D 89.587 1911 114 42 753 2644 88133052 88134896 0.000000e+00 2348.0
11 TraesCS7B01G038700 chr7D 81.259 683 112 10 1063 1734 88370793 88370116 3.950000e-149 538.0
12 TraesCS7B01G038700 chr7D 89.286 140 10 3 2897 3035 88178328 88178193 1.660000e-38 171.0
13 TraesCS7B01G038700 chr7D 90.805 87 8 0 3011 3097 88178020 88177934 2.200000e-22 117.0
14 TraesCS7B01G038700 chr7D 96.923 65 1 1 818 882 88180422 88180359 1.320000e-19 108.0
15 TraesCS7B01G038700 chr7D 79.605 152 28 1 2061 2209 89017901 89018052 4.750000e-19 106.0
16 TraesCS7B01G038700 chr7D 82.308 130 14 6 2757 2885 88135069 88135190 1.710000e-18 104.0
17 TraesCS7B01G038700 chr7A 88.291 948 73 22 829 1765 89758376 89759296 0.000000e+00 1101.0
18 TraesCS7B01G038700 chr7A 87.398 857 74 11 1761 2611 89781333 89782161 0.000000e+00 953.0
19 TraesCS7B01G038700 chr7A 78.763 1342 220 36 1147 2453 90335812 90337123 0.000000e+00 839.0
20 TraesCS7B01G038700 chr7A 81.912 680 110 9 1063 1731 89974461 89975138 2.350000e-156 562.0
21 TraesCS7B01G038700 chr7A 83.333 516 81 3 1078 1589 89948037 89947523 4.070000e-129 472.0
22 TraesCS7B01G038700 chr7A 83.149 362 40 15 2105 2464 89975469 89975811 9.380000e-81 311.0
23 TraesCS7B01G038700 chr7A 89.268 205 16 3 2812 3012 89782642 89782844 5.770000e-63 252.0
24 TraesCS7B01G038700 chr7A 79.577 142 26 1 2071 2209 90365230 90365371 7.950000e-17 99.0
25 TraesCS7B01G038700 chr7A 93.182 44 3 0 2637 2680 89782305 89782348 8.060000e-07 65.8
26 TraesCS7B01G038700 chr4B 87.027 740 83 7 23 761 149072174 149072901 0.000000e+00 822.0
27 TraesCS7B01G038700 chr5B 81.099 746 112 21 23 747 268798021 268798758 1.400000e-158 569.0
28 TraesCS7B01G038700 chr5B 77.083 720 115 33 23 705 584711627 584712333 1.530000e-98 370.0
29 TraesCS7B01G038700 chr5B 76.190 210 36 8 401 608 420920747 420920944 7.950000e-17 99.0
30 TraesCS7B01G038700 chr5D 80.845 757 101 30 23 759 236180851 236180119 3.930000e-154 555.0
31 TraesCS7B01G038700 chrUn 77.191 776 124 32 23 760 280092863 280092103 1.500000e-108 403.0
32 TraesCS7B01G038700 chrUn 85.028 354 44 5 23 368 339031298 339031650 5.530000e-93 351.0
33 TraesCS7B01G038700 chr3B 76.963 777 124 34 23 760 740133188 740133948 3.260000e-105 392.0
34 TraesCS7B01G038700 chr3D 79.609 358 59 11 408 760 56438234 56438582 9.650000e-61 244.0
35 TraesCS7B01G038700 chr6B 78.904 365 72 5 397 759 693902842 693903203 3.470000e-60 243.0
36 TraesCS7B01G038700 chr5A 78.397 287 49 11 407 687 582616652 582616931 1.280000e-39 174.0
37 TraesCS7B01G038700 chr1D 75.798 376 68 19 406 775 206977584 206977226 5.980000e-38 169.0
38 TraesCS7B01G038700 chr4A 75.000 360 73 14 408 760 168818885 168819234 2.160000e-32 150.0
39 TraesCS7B01G038700 chr2D 97.143 35 1 0 598 632 542904908 542904942 3.750000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G038700 chr7B 37604529 37608009 3480 True 6429.0 6429 100.000000 1 3481 1 chr7B.!!$R1 3480
1 TraesCS7B01G038700 chr7B 67103968 67107128 3160 True 5269.0 5269 96.782000 4 3161 1 chr7B.!!$R3 3157
2 TraesCS7B01G038700 chr7B 37421571 37424084 2513 True 1855.5 2499 93.153500 4 2546 2 chr7B.!!$R4 2542
3 TraesCS7B01G038700 chr7B 38783120 38783797 677 False 527.0 527 80.966000 1063 1734 1 chr7B.!!$F2 671
4 TraesCS7B01G038700 chr7B 38658979 38660360 1381 True 390.0 510 80.962500 1063 2461 2 chr7B.!!$R5 1398
5 TraesCS7B01G038700 chr7B 36918619 36919238 619 False 320.0 320 76.415000 1080 1705 1 chr7B.!!$F1 625
6 TraesCS7B01G038700 chr7D 88133052 88135190 2138 False 1226.0 2348 85.947500 753 2885 2 chr7D.!!$F2 2132
7 TraesCS7B01G038700 chr7D 88177934 88180422 2488 True 697.5 2394 92.388500 818 3097 4 chr7D.!!$R2 2279
8 TraesCS7B01G038700 chr7D 88370116 88370793 677 True 538.0 538 81.259000 1063 1734 1 chr7D.!!$R1 671
9 TraesCS7B01G038700 chr7A 89758376 89759296 920 False 1101.0 1101 88.291000 829 1765 1 chr7A.!!$F1 936
10 TraesCS7B01G038700 chr7A 90335812 90337123 1311 False 839.0 839 78.763000 1147 2453 1 chr7A.!!$F2 1306
11 TraesCS7B01G038700 chr7A 89947523 89948037 514 True 472.0 472 83.333000 1078 1589 1 chr7A.!!$R1 511
12 TraesCS7B01G038700 chr7A 89974461 89975811 1350 False 436.5 562 82.530500 1063 2464 2 chr7A.!!$F5 1401
13 TraesCS7B01G038700 chr7A 89781333 89782844 1511 False 423.6 953 89.949333 1761 3012 3 chr7A.!!$F4 1251
14 TraesCS7B01G038700 chr4B 149072174 149072901 727 False 822.0 822 87.027000 23 761 1 chr4B.!!$F1 738
15 TraesCS7B01G038700 chr5B 268798021 268798758 737 False 569.0 569 81.099000 23 747 1 chr5B.!!$F1 724
16 TraesCS7B01G038700 chr5B 584711627 584712333 706 False 370.0 370 77.083000 23 705 1 chr5B.!!$F3 682
17 TraesCS7B01G038700 chr5D 236180119 236180851 732 True 555.0 555 80.845000 23 759 1 chr5D.!!$R1 736
18 TraesCS7B01G038700 chrUn 280092103 280092863 760 True 403.0 403 77.191000 23 760 1 chrUn.!!$R1 737
19 TraesCS7B01G038700 chr3B 740133188 740133948 760 False 392.0 392 76.963000 23 760 1 chr3B.!!$F1 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 930 0.107459 GTCCTGCCTTGGCCTAGAAG 60.107 60.0 16.43 12.06 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3165 4347 5.009631 TCACCATGTCTCAAAAATTCGGAT 58.99 37.5 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 4.426704 AGTTAGAACTCACCTACCATGGT 58.573 43.478 23.55 23.55 41.77 3.55
170 171 5.436410 CACGAAATCACACGTACAAATCAA 58.564 37.500 0.00 0.00 40.76 2.57
202 203 2.159156 TGTTGTCGCTTCGGCTACATAT 60.159 45.455 4.24 0.00 44.18 1.78
300 313 1.928503 CATTGCCATCGAATTTGGTGC 59.071 47.619 5.48 0.00 36.57 5.01
376 389 2.387445 CGGAATCAGCGCCGTTTGA 61.387 57.895 2.29 0.40 42.49 2.69
581 619 1.578926 CAATCGCGTTTTGCCTGGA 59.421 52.632 5.77 0.00 42.08 3.86
652 690 2.485122 GTGCCACGTATTGCCTGC 59.515 61.111 0.00 0.00 0.00 4.85
714 754 3.325293 TTCATCTGCAGTTGGTCTCTC 57.675 47.619 21.65 0.00 0.00 3.20
737 777 2.282180 AATTCGTTGGCGCCAGGT 60.282 55.556 30.75 12.07 38.14 4.00
784 824 4.000988 CGGAGTATACTTGTTTGCCAACT 58.999 43.478 6.88 0.00 33.58 3.16
788 828 5.621193 AGTATACTTGTTTGCCAACTGACT 58.379 37.500 0.00 0.00 33.58 3.41
884 930 0.107459 GTCCTGCCTTGGCCTAGAAG 60.107 60.000 16.43 12.06 0.00 2.85
885 931 0.252696 TCCTGCCTTGGCCTAGAAGA 60.253 55.000 16.43 3.80 0.00 2.87
886 932 0.107459 CCTGCCTTGGCCTAGAAGAC 60.107 60.000 16.43 0.00 0.00 3.01
887 933 0.615331 CTGCCTTGGCCTAGAAGACA 59.385 55.000 16.43 2.89 0.00 3.41
888 934 1.211457 CTGCCTTGGCCTAGAAGACAT 59.789 52.381 16.43 0.00 0.00 3.06
889 935 1.210478 TGCCTTGGCCTAGAAGACATC 59.790 52.381 16.43 0.00 0.00 3.06
890 936 1.475930 GCCTTGGCCTAGAAGACATCC 60.476 57.143 16.43 0.00 0.00 3.51
891 937 1.839994 CCTTGGCCTAGAAGACATCCA 59.160 52.381 16.43 0.00 0.00 3.41
892 938 2.158842 CCTTGGCCTAGAAGACATCCAG 60.159 54.545 16.43 0.00 0.00 3.86
909 1005 4.250305 GCGTCCACCACCACCAGT 62.250 66.667 0.00 0.00 0.00 4.00
991 1095 0.318441 TGAGGAAGACAAGCAGGACG 59.682 55.000 0.00 0.00 0.00 4.79
992 1096 1.004440 AGGAAGACAAGCAGGACGC 60.004 57.895 0.00 0.00 42.91 5.19
993 1097 2.035442 GGAAGACAAGCAGGACGCC 61.035 63.158 0.00 0.00 44.04 5.68
994 1098 1.301716 GAAGACAAGCAGGACGCCA 60.302 57.895 0.00 0.00 44.04 5.69
995 1099 0.674895 GAAGACAAGCAGGACGCCAT 60.675 55.000 0.00 0.00 44.04 4.40
996 1100 0.250901 AAGACAAGCAGGACGCCATT 60.251 50.000 0.00 0.00 44.04 3.16
1008 1112 2.502577 GCCATTGCCATGCCTTCC 59.497 61.111 0.00 0.00 0.00 3.46
1020 1124 1.380650 GCCTTCCTCCTCCTCGTCT 60.381 63.158 0.00 0.00 0.00 4.18
1609 1735 1.880894 CCGGTACTTGACAGCGAGA 59.119 57.895 0.00 0.00 39.14 4.04
1885 2028 3.651423 TGGATCCCTCTGTCTACGAGATA 59.349 47.826 9.90 0.00 0.00 1.98
1895 2038 6.442112 TCTGTCTACGAGATAATGAAGCATG 58.558 40.000 0.00 0.00 0.00 4.06
3161 4343 4.048970 TCCTAGAGTTGCAGGTCTAACT 57.951 45.455 8.11 0.00 39.67 2.24
3162 4344 4.417437 TCCTAGAGTTGCAGGTCTAACTT 58.583 43.478 8.11 0.00 37.27 2.66
3163 4345 5.577100 TCCTAGAGTTGCAGGTCTAACTTA 58.423 41.667 8.11 0.00 37.27 2.24
3164 4346 6.014647 TCCTAGAGTTGCAGGTCTAACTTAA 58.985 40.000 8.11 0.00 37.27 1.85
3165 4347 6.495872 TCCTAGAGTTGCAGGTCTAACTTAAA 59.504 38.462 8.11 0.00 37.27 1.52
3166 4348 7.180408 TCCTAGAGTTGCAGGTCTAACTTAAAT 59.820 37.037 8.11 0.00 37.27 1.40
3167 4349 7.492994 CCTAGAGTTGCAGGTCTAACTTAAATC 59.507 40.741 8.11 0.00 37.27 2.17
3168 4350 6.174049 AGAGTTGCAGGTCTAACTTAAATCC 58.826 40.000 0.00 0.00 37.27 3.01
3169 4351 4.935808 AGTTGCAGGTCTAACTTAAATCCG 59.064 41.667 0.00 0.00 33.59 4.18
3170 4352 4.811969 TGCAGGTCTAACTTAAATCCGA 57.188 40.909 0.00 0.00 0.00 4.55
3171 4353 5.155278 TGCAGGTCTAACTTAAATCCGAA 57.845 39.130 0.00 0.00 0.00 4.30
3172 4354 5.741011 TGCAGGTCTAACTTAAATCCGAAT 58.259 37.500 0.00 0.00 0.00 3.34
3173 4355 6.177610 TGCAGGTCTAACTTAAATCCGAATT 58.822 36.000 0.00 0.00 0.00 2.17
3174 4356 6.657541 TGCAGGTCTAACTTAAATCCGAATTT 59.342 34.615 0.00 0.00 38.61 1.82
3175 4357 7.175990 TGCAGGTCTAACTTAAATCCGAATTTT 59.824 33.333 0.00 0.00 36.49 1.82
3176 4358 8.027189 GCAGGTCTAACTTAAATCCGAATTTTT 58.973 33.333 0.00 0.00 36.49 1.94
3177 4359 9.341899 CAGGTCTAACTTAAATCCGAATTTTTG 57.658 33.333 0.00 0.00 36.49 2.44
3178 4360 9.292195 AGGTCTAACTTAAATCCGAATTTTTGA 57.708 29.630 0.00 0.00 36.49 2.69
3179 4361 9.556030 GGTCTAACTTAAATCCGAATTTTTGAG 57.444 33.333 0.00 0.00 36.49 3.02
3184 4366 8.970691 ACTTAAATCCGAATTTTTGAGACATG 57.029 30.769 0.00 0.00 36.49 3.21
3185 4367 8.028938 ACTTAAATCCGAATTTTTGAGACATGG 58.971 33.333 0.00 0.00 36.49 3.66
3186 4368 5.982890 AATCCGAATTTTTGAGACATGGT 57.017 34.783 0.00 0.00 0.00 3.55
3187 4369 4.764679 TCCGAATTTTTGAGACATGGTG 57.235 40.909 0.00 0.00 0.00 4.17
3188 4370 4.393834 TCCGAATTTTTGAGACATGGTGA 58.606 39.130 0.00 0.00 0.00 4.02
3189 4371 4.824537 TCCGAATTTTTGAGACATGGTGAA 59.175 37.500 0.00 0.00 0.00 3.18
3190 4372 5.476599 TCCGAATTTTTGAGACATGGTGAAT 59.523 36.000 0.00 0.00 0.00 2.57
3191 4373 5.574055 CCGAATTTTTGAGACATGGTGAATG 59.426 40.000 0.00 0.00 42.48 2.67
3205 4387 7.692460 CATGGTGAATGTATGTTATGCCTAT 57.308 36.000 0.00 0.00 0.00 2.57
3206 4388 7.532571 CATGGTGAATGTATGTTATGCCTATG 58.467 38.462 0.00 0.00 0.00 2.23
3207 4389 5.473162 TGGTGAATGTATGTTATGCCTATGC 59.527 40.000 0.00 0.00 38.26 3.14
3208 4390 5.707298 GGTGAATGTATGTTATGCCTATGCT 59.293 40.000 0.00 0.00 38.71 3.79
3209 4391 6.878923 GGTGAATGTATGTTATGCCTATGCTA 59.121 38.462 0.00 0.00 38.71 3.49
3210 4392 7.390440 GGTGAATGTATGTTATGCCTATGCTAA 59.610 37.037 0.00 0.00 38.71 3.09
3211 4393 8.783093 GTGAATGTATGTTATGCCTATGCTAAA 58.217 33.333 0.00 0.00 38.71 1.85
3212 4394 9.348476 TGAATGTATGTTATGCCTATGCTAAAA 57.652 29.630 0.00 0.00 38.71 1.52
3242 4424 8.862325 TTCATATGGTTTGACATTTGTAGAGT 57.138 30.769 2.13 0.00 33.38 3.24
3243 4425 8.492673 TCATATGGTTTGACATTTGTAGAGTC 57.507 34.615 2.13 0.00 33.38 3.36
3244 4426 8.321353 TCATATGGTTTGACATTTGTAGAGTCT 58.679 33.333 2.13 0.00 33.38 3.24
3245 4427 9.599866 CATATGGTTTGACATTTGTAGAGTCTA 57.400 33.333 0.00 0.00 33.56 2.59
3247 4429 7.905604 TGGTTTGACATTTGTAGAGTCTATG 57.094 36.000 2.51 1.06 33.56 2.23
3248 4430 6.371548 TGGTTTGACATTTGTAGAGTCTATGC 59.628 38.462 2.51 0.00 33.56 3.14
3249 4431 6.183360 GGTTTGACATTTGTAGAGTCTATGCC 60.183 42.308 2.51 0.00 33.56 4.40
3250 4432 5.023533 TGACATTTGTAGAGTCTATGCCC 57.976 43.478 2.51 0.00 33.56 5.36
3251 4433 4.051922 GACATTTGTAGAGTCTATGCCCG 58.948 47.826 2.51 0.00 0.00 6.13
3252 4434 2.596904 TTTGTAGAGTCTATGCCCGC 57.403 50.000 2.51 0.00 0.00 6.13
3253 4435 1.480789 TTGTAGAGTCTATGCCCGCA 58.519 50.000 2.51 0.00 0.00 5.69
3254 4436 1.480789 TGTAGAGTCTATGCCCGCAA 58.519 50.000 2.51 0.00 0.00 4.85
3255 4437 1.828595 TGTAGAGTCTATGCCCGCAAA 59.171 47.619 2.51 0.00 0.00 3.68
3256 4438 2.434336 TGTAGAGTCTATGCCCGCAAAT 59.566 45.455 2.51 0.00 0.00 2.32
3257 4439 2.717639 AGAGTCTATGCCCGCAAATT 57.282 45.000 0.00 0.00 0.00 1.82
3258 4440 3.838244 AGAGTCTATGCCCGCAAATTA 57.162 42.857 0.00 0.00 0.00 1.40
3259 4441 4.357918 AGAGTCTATGCCCGCAAATTAT 57.642 40.909 0.00 0.00 0.00 1.28
3260 4442 5.483685 AGAGTCTATGCCCGCAAATTATA 57.516 39.130 0.00 0.00 0.00 0.98
3261 4443 5.865085 AGAGTCTATGCCCGCAAATTATAA 58.135 37.500 0.00 0.00 0.00 0.98
3262 4444 6.296026 AGAGTCTATGCCCGCAAATTATAAA 58.704 36.000 0.00 0.00 0.00 1.40
3263 4445 6.428159 AGAGTCTATGCCCGCAAATTATAAAG 59.572 38.462 0.00 0.00 0.00 1.85
3264 4446 5.048713 AGTCTATGCCCGCAAATTATAAAGC 60.049 40.000 0.00 0.00 0.00 3.51
3265 4447 5.048713 GTCTATGCCCGCAAATTATAAAGCT 60.049 40.000 0.00 0.00 0.00 3.74
3266 4448 3.708563 TGCCCGCAAATTATAAAGCTC 57.291 42.857 0.00 0.00 0.00 4.09
3267 4449 3.020274 TGCCCGCAAATTATAAAGCTCA 58.980 40.909 0.00 0.00 0.00 4.26
3268 4450 3.445450 TGCCCGCAAATTATAAAGCTCAA 59.555 39.130 0.00 0.00 0.00 3.02
3269 4451 3.796717 GCCCGCAAATTATAAAGCTCAAC 59.203 43.478 0.00 0.00 0.00 3.18
3270 4452 4.440112 GCCCGCAAATTATAAAGCTCAACT 60.440 41.667 0.00 0.00 0.00 3.16
3271 4453 5.036737 CCCGCAAATTATAAAGCTCAACTG 58.963 41.667 0.00 0.00 0.00 3.16
3272 4454 5.393027 CCCGCAAATTATAAAGCTCAACTGT 60.393 40.000 0.00 0.00 0.00 3.55
3273 4455 5.739161 CCGCAAATTATAAAGCTCAACTGTC 59.261 40.000 0.00 0.00 0.00 3.51
3274 4456 5.739161 CGCAAATTATAAAGCTCAACTGTCC 59.261 40.000 0.00 0.00 0.00 4.02
3275 4457 6.620678 GCAAATTATAAAGCTCAACTGTCCA 58.379 36.000 0.00 0.00 0.00 4.02
3276 4458 7.260603 GCAAATTATAAAGCTCAACTGTCCAT 58.739 34.615 0.00 0.00 0.00 3.41
3277 4459 7.433425 GCAAATTATAAAGCTCAACTGTCCATC 59.567 37.037 0.00 0.00 0.00 3.51
3278 4460 8.461222 CAAATTATAAAGCTCAACTGTCCATCA 58.539 33.333 0.00 0.00 0.00 3.07
3279 4461 8.579850 AATTATAAAGCTCAACTGTCCATCAA 57.420 30.769 0.00 0.00 0.00 2.57
3280 4462 7.994425 TTATAAAGCTCAACTGTCCATCAAA 57.006 32.000 0.00 0.00 0.00 2.69
3281 4463 6.899393 ATAAAGCTCAACTGTCCATCAAAA 57.101 33.333 0.00 0.00 0.00 2.44
3282 4464 4.574599 AAGCTCAACTGTCCATCAAAAC 57.425 40.909 0.00 0.00 0.00 2.43
3283 4465 2.549754 AGCTCAACTGTCCATCAAAACG 59.450 45.455 0.00 0.00 0.00 3.60
3284 4466 2.290641 GCTCAACTGTCCATCAAAACGT 59.709 45.455 0.00 0.00 0.00 3.99
3285 4467 3.607078 GCTCAACTGTCCATCAAAACGTC 60.607 47.826 0.00 0.00 0.00 4.34
3286 4468 2.875933 TCAACTGTCCATCAAAACGTCC 59.124 45.455 0.00 0.00 0.00 4.79
3287 4469 1.508632 ACTGTCCATCAAAACGTCCG 58.491 50.000 0.00 0.00 0.00 4.79
3288 4470 0.796312 CTGTCCATCAAAACGTCCGG 59.204 55.000 0.00 0.00 0.00 5.14
3289 4471 0.393448 TGTCCATCAAAACGTCCGGA 59.607 50.000 0.00 0.00 0.00 5.14
3290 4472 0.794473 GTCCATCAAAACGTCCGGAC 59.206 55.000 25.28 25.28 36.46 4.79
3291 4473 0.393448 TCCATCAAAACGTCCGGACA 59.607 50.000 32.80 13.93 0.00 4.02
3292 4474 0.796312 CCATCAAAACGTCCGGACAG 59.204 55.000 32.80 25.84 0.00 3.51
3293 4475 0.165944 CATCAAAACGTCCGGACAGC 59.834 55.000 32.80 8.02 0.00 4.40
3294 4476 0.034896 ATCAAAACGTCCGGACAGCT 59.965 50.000 32.80 14.41 0.00 4.24
3295 4477 0.599204 TCAAAACGTCCGGACAGCTC 60.599 55.000 32.80 7.20 0.00 4.09
3296 4478 0.878523 CAAAACGTCCGGACAGCTCA 60.879 55.000 32.80 0.00 0.00 4.26
3297 4479 0.600255 AAAACGTCCGGACAGCTCAG 60.600 55.000 32.80 18.20 0.00 3.35
3298 4480 1.745320 AAACGTCCGGACAGCTCAGT 61.745 55.000 32.80 18.87 0.00 3.41
3299 4481 2.143594 AACGTCCGGACAGCTCAGTC 62.144 60.000 32.80 4.03 37.80 3.51
3305 4487 3.366629 GACAGCTCAGTCCGGACA 58.633 61.111 35.00 15.81 32.36 4.02
3306 4488 1.080434 GACAGCTCAGTCCGGACAC 60.080 63.158 35.00 20.84 32.36 3.67
3307 4489 1.528292 GACAGCTCAGTCCGGACACT 61.528 60.000 35.00 22.63 32.36 3.55
3308 4490 1.115930 ACAGCTCAGTCCGGACACTT 61.116 55.000 35.00 13.48 0.00 3.16
3309 4491 0.034059 CAGCTCAGTCCGGACACTTT 59.966 55.000 35.00 13.07 0.00 2.66
3310 4492 0.759346 AGCTCAGTCCGGACACTTTT 59.241 50.000 35.00 12.66 0.00 2.27
3311 4493 1.141053 AGCTCAGTCCGGACACTTTTT 59.859 47.619 35.00 11.85 0.00 1.94
3312 4494 1.264288 GCTCAGTCCGGACACTTTTTG 59.736 52.381 35.00 22.90 0.00 2.44
3313 4495 2.561569 CTCAGTCCGGACACTTTTTGT 58.438 47.619 35.00 10.24 43.10 2.83
3324 4506 4.027572 ACACTTTTTGTCATCCAACACG 57.972 40.909 0.00 0.00 29.79 4.49
3325 4507 3.442273 ACACTTTTTGTCATCCAACACGT 59.558 39.130 0.00 0.00 29.79 4.49
3326 4508 3.790820 CACTTTTTGTCATCCAACACGTG 59.209 43.478 15.48 15.48 30.01 4.49
3327 4509 3.442273 ACTTTTTGTCATCCAACACGTGT 59.558 39.130 17.22 17.22 31.20 4.49
3328 4510 4.636648 ACTTTTTGTCATCCAACACGTGTA 59.363 37.500 23.69 6.90 31.20 2.90
3329 4511 5.298276 ACTTTTTGTCATCCAACACGTGTAT 59.702 36.000 23.69 9.31 31.20 2.29
3330 4512 5.351233 TTTTGTCATCCAACACGTGTATC 57.649 39.130 23.69 7.96 31.20 2.24
3331 4513 3.669251 TGTCATCCAACACGTGTATCA 57.331 42.857 23.69 8.77 0.00 2.15
3332 4514 3.996480 TGTCATCCAACACGTGTATCAA 58.004 40.909 23.69 8.51 0.00 2.57
3333 4515 4.381411 TGTCATCCAACACGTGTATCAAA 58.619 39.130 23.69 6.63 0.00 2.69
3334 4516 4.212425 TGTCATCCAACACGTGTATCAAAC 59.788 41.667 23.69 15.79 0.00 2.93
3335 4517 3.430556 TCATCCAACACGTGTATCAAACG 59.569 43.478 23.69 7.80 46.32 3.60
3343 4525 2.668250 CGTGTATCAAACGTCAGTGGA 58.332 47.619 0.00 0.00 36.31 4.02
3344 4526 2.407361 CGTGTATCAAACGTCAGTGGAC 59.593 50.000 0.00 0.00 40.77 4.02
3345 4527 2.735134 GTGTATCAAACGTCAGTGGACC 59.265 50.000 0.00 0.00 41.13 4.46
3346 4528 1.990563 GTATCAAACGTCAGTGGACCG 59.009 52.381 0.00 0.00 41.13 4.79
3347 4529 0.320421 ATCAAACGTCAGTGGACCGG 60.320 55.000 0.00 0.00 41.13 5.28
3348 4530 1.227438 CAAACGTCAGTGGACCGGT 60.227 57.895 6.92 6.92 41.13 5.28
3349 4531 1.068585 AAACGTCAGTGGACCGGTC 59.931 57.895 27.04 27.04 41.13 4.79
3350 4532 1.397390 AAACGTCAGTGGACCGGTCT 61.397 55.000 32.52 12.02 41.13 3.85
3351 4533 2.083835 AACGTCAGTGGACCGGTCTG 62.084 60.000 32.52 23.13 41.13 3.51
3352 4534 2.048127 GTCAGTGGACCGGTCTGC 60.048 66.667 32.52 24.03 38.12 4.26
3353 4535 2.523168 TCAGTGGACCGGTCTGCA 60.523 61.111 32.52 20.85 0.00 4.41
3354 4536 2.357517 CAGTGGACCGGTCTGCAC 60.358 66.667 32.52 29.49 0.00 4.57
3355 4537 3.991051 AGTGGACCGGTCTGCACG 61.991 66.667 32.52 0.00 30.47 5.34
3356 4538 4.295119 GTGGACCGGTCTGCACGT 62.295 66.667 32.52 0.00 0.00 4.49
3357 4539 3.542676 TGGACCGGTCTGCACGTT 61.543 61.111 32.52 0.00 0.00 3.99
3358 4540 2.737376 GGACCGGTCTGCACGTTC 60.737 66.667 32.52 10.90 0.00 3.95
3359 4541 3.103911 GACCGGTCTGCACGTTCG 61.104 66.667 27.64 0.00 0.00 3.95
3360 4542 3.547249 GACCGGTCTGCACGTTCGA 62.547 63.158 27.64 0.00 0.00 3.71
3361 4543 2.355363 CCGGTCTGCACGTTCGAA 60.355 61.111 0.00 0.00 0.00 3.71
3362 4544 1.736645 CCGGTCTGCACGTTCGAAT 60.737 57.895 0.00 0.00 0.00 3.34
3363 4545 1.289109 CCGGTCTGCACGTTCGAATT 61.289 55.000 0.00 0.00 0.00 2.17
3364 4546 0.093026 CGGTCTGCACGTTCGAATTC 59.907 55.000 0.00 0.00 0.00 2.17
3365 4547 1.429463 GGTCTGCACGTTCGAATTCT 58.571 50.000 0.00 0.00 0.00 2.40
3366 4548 1.798813 GGTCTGCACGTTCGAATTCTT 59.201 47.619 0.00 0.00 0.00 2.52
3367 4549 2.991190 GGTCTGCACGTTCGAATTCTTA 59.009 45.455 0.00 0.00 0.00 2.10
3368 4550 3.181533 GGTCTGCACGTTCGAATTCTTAC 60.182 47.826 0.00 0.62 0.00 2.34
3369 4551 3.427528 GTCTGCACGTTCGAATTCTTACA 59.572 43.478 0.00 0.00 0.00 2.41
3370 4552 4.052608 TCTGCACGTTCGAATTCTTACAA 58.947 39.130 0.00 0.00 0.00 2.41
3371 4553 4.508492 TCTGCACGTTCGAATTCTTACAAA 59.492 37.500 0.00 0.00 0.00 2.83
3372 4554 5.006844 TCTGCACGTTCGAATTCTTACAAAA 59.993 36.000 0.00 0.00 0.00 2.44
3373 4555 4.965158 TGCACGTTCGAATTCTTACAAAAC 59.035 37.500 0.00 0.00 0.00 2.43
3374 4556 4.084718 GCACGTTCGAATTCTTACAAAACG 59.915 41.667 0.00 11.26 42.51 3.60
3375 4557 4.605594 CACGTTCGAATTCTTACAAAACGG 59.394 41.667 0.00 9.83 41.49 4.44
3376 4558 4.507388 ACGTTCGAATTCTTACAAAACGGA 59.493 37.500 0.00 0.46 41.49 4.69
3377 4559 5.006552 ACGTTCGAATTCTTACAAAACGGAA 59.993 36.000 0.00 5.19 41.49 4.30
3378 4560 5.558888 CGTTCGAATTCTTACAAAACGGAAG 59.441 40.000 0.00 0.00 35.61 3.46
3379 4561 5.025986 TCGAATTCTTACAAAACGGAAGC 57.974 39.130 3.52 0.00 0.00 3.86
3380 4562 4.512198 TCGAATTCTTACAAAACGGAAGCA 59.488 37.500 3.52 0.00 0.00 3.91
3381 4563 4.846137 CGAATTCTTACAAAACGGAAGCAG 59.154 41.667 3.52 0.00 0.00 4.24
3382 4564 5.333798 CGAATTCTTACAAAACGGAAGCAGA 60.334 40.000 3.52 0.00 0.00 4.26
3383 4565 6.575162 AATTCTTACAAAACGGAAGCAGAT 57.425 33.333 0.00 0.00 0.00 2.90
3384 4566 5.607119 TTCTTACAAAACGGAAGCAGATC 57.393 39.130 0.00 0.00 0.00 2.75
3385 4567 4.894784 TCTTACAAAACGGAAGCAGATCT 58.105 39.130 0.00 0.00 0.00 2.75
3386 4568 6.032956 TCTTACAAAACGGAAGCAGATCTA 57.967 37.500 0.00 0.00 0.00 1.98
3387 4569 6.100004 TCTTACAAAACGGAAGCAGATCTAG 58.900 40.000 0.00 0.00 0.00 2.43
3388 4570 3.600388 ACAAAACGGAAGCAGATCTAGG 58.400 45.455 0.00 0.00 0.00 3.02
3389 4571 2.939103 CAAAACGGAAGCAGATCTAGGG 59.061 50.000 0.00 0.00 0.00 3.53
3390 4572 1.123928 AACGGAAGCAGATCTAGGGG 58.876 55.000 0.00 0.00 0.00 4.79
3391 4573 0.760945 ACGGAAGCAGATCTAGGGGG 60.761 60.000 0.00 0.00 0.00 5.40
3392 4574 0.760945 CGGAAGCAGATCTAGGGGGT 60.761 60.000 0.00 0.00 0.00 4.95
3393 4575 1.512735 GGAAGCAGATCTAGGGGGTT 58.487 55.000 0.00 0.00 0.00 4.11
3394 4576 1.847088 GGAAGCAGATCTAGGGGGTTT 59.153 52.381 0.00 0.00 0.00 3.27
3395 4577 2.422093 GGAAGCAGATCTAGGGGGTTTG 60.422 54.545 0.00 0.00 0.00 2.93
3396 4578 1.972588 AGCAGATCTAGGGGGTTTGT 58.027 50.000 0.00 0.00 0.00 2.83
3397 4579 1.561542 AGCAGATCTAGGGGGTTTGTG 59.438 52.381 0.00 0.00 0.00 3.33
3398 4580 1.408822 GCAGATCTAGGGGGTTTGTGG 60.409 57.143 0.00 0.00 0.00 4.17
3399 4581 1.212935 CAGATCTAGGGGGTTTGTGGG 59.787 57.143 0.00 0.00 0.00 4.61
3400 4582 0.106669 GATCTAGGGGGTTTGTGGGC 60.107 60.000 0.00 0.00 0.00 5.36
3401 4583 1.921869 ATCTAGGGGGTTTGTGGGCG 61.922 60.000 0.00 0.00 0.00 6.13
3402 4584 2.855014 TAGGGGGTTTGTGGGCGT 60.855 61.111 0.00 0.00 0.00 5.68
3403 4585 2.814913 CTAGGGGGTTTGTGGGCGTC 62.815 65.000 0.00 0.00 0.00 5.19
3406 4588 4.629523 GGGTTTGTGGGCGTCCGA 62.630 66.667 0.00 0.00 35.24 4.55
3407 4589 2.592287 GGTTTGTGGGCGTCCGAA 60.592 61.111 0.00 0.00 35.24 4.30
3408 4590 2.635338 GTTTGTGGGCGTCCGAAC 59.365 61.111 0.00 2.50 35.24 3.95
3409 4591 2.181521 GTTTGTGGGCGTCCGAACA 61.182 57.895 12.98 5.12 35.24 3.18
3410 4592 1.890041 TTTGTGGGCGTCCGAACAG 60.890 57.895 0.00 0.00 35.24 3.16
3411 4593 4.980805 TGTGGGCGTCCGAACAGC 62.981 66.667 0.00 0.00 35.24 4.40
3420 4602 4.077184 CCGAACAGCCGCCCAGTA 62.077 66.667 0.00 0.00 0.00 2.74
3421 4603 2.509336 CGAACAGCCGCCCAGTAG 60.509 66.667 0.00 0.00 0.00 2.57
3422 4604 2.125106 GAACAGCCGCCCAGTAGG 60.125 66.667 0.00 0.00 39.47 3.18
3431 4613 2.967397 CCCAGTAGGCGTTCGACA 59.033 61.111 0.00 0.00 0.00 4.35
3432 4614 1.445582 CCCAGTAGGCGTTCGACAC 60.446 63.158 0.00 0.00 0.00 3.67
3433 4615 1.445582 CCAGTAGGCGTTCGACACC 60.446 63.158 0.00 0.00 0.00 4.16
3434 4616 1.445582 CAGTAGGCGTTCGACACCC 60.446 63.158 0.00 0.00 0.00 4.61
3435 4617 2.125793 GTAGGCGTTCGACACCCC 60.126 66.667 0.00 0.00 0.00 4.95
3436 4618 3.751246 TAGGCGTTCGACACCCCG 61.751 66.667 0.00 0.00 0.00 5.73
3441 4623 4.629523 GTTCGACACCCCGGCCAA 62.630 66.667 2.24 0.00 0.00 4.52
3442 4624 4.629523 TTCGACACCCCGGCCAAC 62.630 66.667 2.24 0.00 0.00 3.77
3449 4631 3.917760 CCCCGGCCAACGCAAAAA 61.918 61.111 2.24 0.00 42.52 1.94
3450 4632 2.660224 CCCGGCCAACGCAAAAAC 60.660 61.111 2.24 0.00 42.52 2.43
3451 4633 2.660224 CCGGCCAACGCAAAAACC 60.660 61.111 2.24 0.00 42.52 3.27
3452 4634 2.415426 CGGCCAACGCAAAAACCT 59.585 55.556 2.24 0.00 36.38 3.50
3453 4635 1.227118 CGGCCAACGCAAAAACCTT 60.227 52.632 2.24 0.00 36.38 3.50
3454 4636 1.486644 CGGCCAACGCAAAAACCTTG 61.487 55.000 2.24 0.00 36.38 3.61
3455 4637 1.641140 GCCAACGCAAAAACCTTGC 59.359 52.632 0.00 0.00 41.71 4.01
3456 4638 1.771073 GCCAACGCAAAAACCTTGCC 61.771 55.000 4.01 0.00 42.10 4.52
3457 4639 0.460987 CCAACGCAAAAACCTTGCCA 60.461 50.000 4.01 0.00 42.10 4.92
3458 4640 0.929615 CAACGCAAAAACCTTGCCAG 59.070 50.000 4.01 0.00 42.10 4.85
3460 4642 1.040339 ACGCAAAAACCTTGCCAGGA 61.040 50.000 11.55 0.00 44.19 3.86
3461 4643 0.318955 CGCAAAAACCTTGCCAGGAG 60.319 55.000 11.55 0.00 44.19 3.69
3462 4644 0.601046 GCAAAAACCTTGCCAGGAGC 60.601 55.000 11.55 2.88 44.19 4.70
3463 4645 0.033920 CAAAAACCTTGCCAGGAGCC 59.966 55.000 11.55 0.00 44.19 4.70
3464 4646 0.398381 AAAAACCTTGCCAGGAGCCA 60.398 50.000 11.55 0.00 44.19 4.75
3465 4647 0.398381 AAAACCTTGCCAGGAGCCAA 60.398 50.000 11.55 0.00 44.19 4.52
3466 4648 0.829182 AAACCTTGCCAGGAGCCAAG 60.829 55.000 11.55 0.00 44.19 3.61
3467 4649 1.719063 AACCTTGCCAGGAGCCAAGA 61.719 55.000 11.55 0.00 44.19 3.02
3468 4650 1.305623 CCTTGCCAGGAGCCAAGAT 59.694 57.895 0.00 0.00 44.19 2.40
3469 4651 0.324091 CCTTGCCAGGAGCCAAGATT 60.324 55.000 0.00 0.00 44.19 2.40
3470 4652 1.553706 CTTGCCAGGAGCCAAGATTT 58.446 50.000 0.00 0.00 42.71 2.17
3471 4653 1.897802 CTTGCCAGGAGCCAAGATTTT 59.102 47.619 0.00 0.00 42.71 1.82
3472 4654 1.549203 TGCCAGGAGCCAAGATTTTC 58.451 50.000 0.00 0.00 42.71 2.29
3473 4655 1.076024 TGCCAGGAGCCAAGATTTTCT 59.924 47.619 0.00 0.00 42.71 2.52
3474 4656 1.475682 GCCAGGAGCCAAGATTTTCTG 59.524 52.381 0.00 0.00 34.35 3.02
3475 4657 2.881403 GCCAGGAGCCAAGATTTTCTGA 60.881 50.000 0.00 0.00 34.35 3.27
3476 4658 2.751806 CCAGGAGCCAAGATTTTCTGAC 59.248 50.000 0.00 0.00 0.00 3.51
3477 4659 3.560882 CCAGGAGCCAAGATTTTCTGACT 60.561 47.826 0.00 0.00 0.00 3.41
3478 4660 4.323792 CCAGGAGCCAAGATTTTCTGACTA 60.324 45.833 0.00 0.00 0.00 2.59
3479 4661 4.633565 CAGGAGCCAAGATTTTCTGACTAC 59.366 45.833 0.00 0.00 0.00 2.73
3480 4662 3.619038 GGAGCCAAGATTTTCTGACTACG 59.381 47.826 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.959705 TCTTCTATTAATACACTCTCTGTCGA 57.040 34.615 0.00 0.00 33.91 4.20
14 15 8.573035 GGTCCTCTTCTATTAATACACTCTCTG 58.427 40.741 0.00 0.00 0.00 3.35
83 84 1.071228 CCATGATGCTGGAATCCGAGA 59.929 52.381 0.00 0.00 38.69 4.04
300 313 1.670406 GCTGCAGTGGAGGTGACAG 60.670 63.158 16.64 0.63 0.00 3.51
376 389 0.104855 TGCTGCGAGCCGAGATTTAT 59.895 50.000 5.82 0.00 41.51 1.40
453 491 4.980805 GGTCGACAGGCCGTGCAA 62.981 66.667 18.91 0.00 29.39 4.08
687 727 5.769662 AGACCAACTGCAGATGAAATTAACA 59.230 36.000 24.19 0.00 0.00 2.41
714 754 2.088178 GCGCCAACGAATTGCCAAG 61.088 57.895 0.00 0.00 43.93 3.61
784 824 2.829206 CGTGCAAACGCCCAAGTCA 61.829 57.895 0.00 0.00 0.00 3.41
788 828 2.642129 CATCGTGCAAACGCCCAA 59.358 55.556 0.00 0.00 0.00 4.12
884 930 1.741770 GTGGTGGACGCTGGATGTC 60.742 63.158 0.00 0.00 35.60 3.06
885 931 2.347490 GTGGTGGACGCTGGATGT 59.653 61.111 0.00 0.00 0.00 3.06
886 932 2.436646 GGTGGTGGACGCTGGATG 60.437 66.667 0.00 0.00 0.00 3.51
887 933 2.927856 TGGTGGTGGACGCTGGAT 60.928 61.111 0.00 0.00 0.00 3.41
888 934 3.936203 GTGGTGGTGGACGCTGGA 61.936 66.667 0.00 0.00 0.00 3.86
890 936 4.248842 TGGTGGTGGTGGACGCTG 62.249 66.667 0.00 0.00 0.00 5.18
891 937 3.941188 CTGGTGGTGGTGGACGCT 61.941 66.667 0.00 0.00 0.00 5.07
892 938 4.250305 ACTGGTGGTGGTGGACGC 62.250 66.667 0.00 0.00 0.00 5.19
909 1005 1.455959 GCTTCCCGAGGAGCCTAGA 60.456 63.158 0.00 0.00 31.21 2.43
992 1096 1.397390 GGAGGAAGGCATGGCAATGG 61.397 60.000 22.64 0.00 34.09 3.16
993 1097 0.396695 AGGAGGAAGGCATGGCAATG 60.397 55.000 22.64 0.00 36.82 2.82
994 1098 0.106318 GAGGAGGAAGGCATGGCAAT 60.106 55.000 22.64 9.80 0.00 3.56
995 1099 1.304282 GAGGAGGAAGGCATGGCAA 59.696 57.895 22.64 0.00 0.00 4.52
996 1100 2.683465 GGAGGAGGAAGGCATGGCA 61.683 63.158 22.64 0.00 0.00 4.92
1008 1112 1.098712 CGAGGGAAGACGAGGAGGAG 61.099 65.000 0.00 0.00 0.00 3.69
1020 1124 4.689549 TGGTCCGGCTCGAGGGAA 62.690 66.667 15.58 0.00 33.27 3.97
1609 1735 2.981977 TTCGCCGCGTGTTTCTTCCT 62.982 55.000 13.39 0.00 0.00 3.36
3161 4343 7.812191 CACCATGTCTCAAAAATTCGGATTTAA 59.188 33.333 1.10 0.00 34.44 1.52
3162 4344 7.175816 TCACCATGTCTCAAAAATTCGGATTTA 59.824 33.333 1.10 0.00 34.44 1.40
3163 4345 6.015519 TCACCATGTCTCAAAAATTCGGATTT 60.016 34.615 0.00 0.00 37.06 2.17
3164 4346 5.476599 TCACCATGTCTCAAAAATTCGGATT 59.523 36.000 0.00 0.00 0.00 3.01
3165 4347 5.009631 TCACCATGTCTCAAAAATTCGGAT 58.990 37.500 0.00 0.00 0.00 4.18
3166 4348 4.393834 TCACCATGTCTCAAAAATTCGGA 58.606 39.130 0.00 0.00 0.00 4.55
3167 4349 4.764679 TCACCATGTCTCAAAAATTCGG 57.235 40.909 0.00 0.00 0.00 4.30
3168 4350 6.151691 ACATTCACCATGTCTCAAAAATTCG 58.848 36.000 0.00 0.00 43.17 3.34
3169 4351 9.079833 CATACATTCACCATGTCTCAAAAATTC 57.920 33.333 0.00 0.00 43.17 2.17
3170 4352 8.587608 ACATACATTCACCATGTCTCAAAAATT 58.412 29.630 0.00 0.00 43.17 1.82
3171 4353 8.125978 ACATACATTCACCATGTCTCAAAAAT 57.874 30.769 0.00 0.00 43.17 1.82
3172 4354 7.523293 ACATACATTCACCATGTCTCAAAAA 57.477 32.000 0.00 0.00 43.17 1.94
3173 4355 7.523293 AACATACATTCACCATGTCTCAAAA 57.477 32.000 0.00 0.00 43.17 2.44
3174 4356 8.676401 CATAACATACATTCACCATGTCTCAAA 58.324 33.333 0.00 0.00 43.17 2.69
3175 4357 7.201723 GCATAACATACATTCACCATGTCTCAA 60.202 37.037 0.00 0.00 43.17 3.02
3176 4358 6.260714 GCATAACATACATTCACCATGTCTCA 59.739 38.462 0.00 0.00 43.17 3.27
3177 4359 6.293626 GGCATAACATACATTCACCATGTCTC 60.294 42.308 0.00 0.00 43.17 3.36
3178 4360 5.532406 GGCATAACATACATTCACCATGTCT 59.468 40.000 0.00 0.00 43.17 3.41
3179 4361 5.532406 AGGCATAACATACATTCACCATGTC 59.468 40.000 0.00 0.00 43.17 3.06
3181 4363 7.532571 CATAGGCATAACATACATTCACCATG 58.467 38.462 0.00 0.00 39.07 3.66
3182 4364 6.151648 GCATAGGCATAACATACATTCACCAT 59.848 38.462 0.00 0.00 40.72 3.55
3183 4365 5.473162 GCATAGGCATAACATACATTCACCA 59.527 40.000 0.00 0.00 40.72 4.17
3184 4366 5.707298 AGCATAGGCATAACATACATTCACC 59.293 40.000 0.67 0.00 44.61 4.02
3185 4367 6.808008 AGCATAGGCATAACATACATTCAC 57.192 37.500 0.67 0.00 44.61 3.18
3186 4368 8.916628 TTTAGCATAGGCATAACATACATTCA 57.083 30.769 0.67 0.00 44.61 2.57
3216 4398 9.295825 ACTCTACAAATGTCAAACCATATGAAA 57.704 29.630 3.65 0.00 0.00 2.69
3217 4399 8.862325 ACTCTACAAATGTCAAACCATATGAA 57.138 30.769 3.65 0.00 0.00 2.57
3218 4400 8.321353 AGACTCTACAAATGTCAAACCATATGA 58.679 33.333 3.65 0.00 33.56 2.15
3219 4401 8.498054 AGACTCTACAAATGTCAAACCATATG 57.502 34.615 0.00 0.00 33.56 1.78
3221 4403 9.599866 CATAGACTCTACAAATGTCAAACCATA 57.400 33.333 0.00 0.00 33.56 2.74
3222 4404 7.066284 GCATAGACTCTACAAATGTCAAACCAT 59.934 37.037 0.00 0.00 33.56 3.55
3223 4405 6.371548 GCATAGACTCTACAAATGTCAAACCA 59.628 38.462 0.00 0.00 33.56 3.67
3224 4406 6.183360 GGCATAGACTCTACAAATGTCAAACC 60.183 42.308 0.00 0.00 33.56 3.27
3225 4407 6.183360 GGGCATAGACTCTACAAATGTCAAAC 60.183 42.308 0.00 0.00 33.56 2.93
3226 4408 5.880332 GGGCATAGACTCTACAAATGTCAAA 59.120 40.000 0.00 0.00 33.56 2.69
3227 4409 5.428253 GGGCATAGACTCTACAAATGTCAA 58.572 41.667 0.00 0.00 33.56 3.18
3228 4410 4.441495 CGGGCATAGACTCTACAAATGTCA 60.441 45.833 0.00 0.00 33.56 3.58
3229 4411 4.051922 CGGGCATAGACTCTACAAATGTC 58.948 47.826 0.00 0.00 0.00 3.06
3230 4412 3.741388 GCGGGCATAGACTCTACAAATGT 60.741 47.826 0.00 0.00 0.00 2.71
3231 4413 2.802816 GCGGGCATAGACTCTACAAATG 59.197 50.000 0.00 0.00 0.00 2.32
3232 4414 2.434336 TGCGGGCATAGACTCTACAAAT 59.566 45.455 0.00 0.00 0.00 2.32
3233 4415 1.828595 TGCGGGCATAGACTCTACAAA 59.171 47.619 0.00 0.00 0.00 2.83
3234 4416 1.480789 TGCGGGCATAGACTCTACAA 58.519 50.000 0.00 0.00 0.00 2.41
3235 4417 1.480789 TTGCGGGCATAGACTCTACA 58.519 50.000 0.00 0.00 0.00 2.74
3236 4418 2.596904 TTTGCGGGCATAGACTCTAC 57.403 50.000 0.00 0.00 0.00 2.59
3237 4419 3.838244 AATTTGCGGGCATAGACTCTA 57.162 42.857 0.00 0.00 0.00 2.43
3238 4420 2.717639 AATTTGCGGGCATAGACTCT 57.282 45.000 0.00 0.00 0.00 3.24
3239 4421 6.554334 TTTATAATTTGCGGGCATAGACTC 57.446 37.500 0.00 0.00 0.00 3.36
3240 4422 5.048713 GCTTTATAATTTGCGGGCATAGACT 60.049 40.000 0.00 0.00 0.00 3.24
3241 4423 5.048713 AGCTTTATAATTTGCGGGCATAGAC 60.049 40.000 0.00 0.00 0.00 2.59
3242 4424 5.070001 AGCTTTATAATTTGCGGGCATAGA 58.930 37.500 0.00 0.00 0.00 1.98
3243 4425 5.048782 TGAGCTTTATAATTTGCGGGCATAG 60.049 40.000 0.00 0.00 0.00 2.23
3244 4426 4.824537 TGAGCTTTATAATTTGCGGGCATA 59.175 37.500 0.00 0.00 0.00 3.14
3245 4427 3.636300 TGAGCTTTATAATTTGCGGGCAT 59.364 39.130 0.00 0.00 0.00 4.40
3246 4428 3.020274 TGAGCTTTATAATTTGCGGGCA 58.980 40.909 0.00 0.00 0.00 5.36
3247 4429 3.708563 TGAGCTTTATAATTTGCGGGC 57.291 42.857 0.00 0.00 0.00 6.13
3248 4430 5.036737 CAGTTGAGCTTTATAATTTGCGGG 58.963 41.667 0.00 0.00 0.00 6.13
3249 4431 5.640732 ACAGTTGAGCTTTATAATTTGCGG 58.359 37.500 0.00 0.00 0.00 5.69
3250 4432 5.739161 GGACAGTTGAGCTTTATAATTTGCG 59.261 40.000 0.00 0.00 0.00 4.85
3251 4433 6.620678 TGGACAGTTGAGCTTTATAATTTGC 58.379 36.000 0.00 0.00 0.00 3.68
3252 4434 8.461222 TGATGGACAGTTGAGCTTTATAATTTG 58.539 33.333 0.00 0.00 0.00 2.32
3253 4435 8.579850 TGATGGACAGTTGAGCTTTATAATTT 57.420 30.769 0.00 0.00 0.00 1.82
3254 4436 8.579850 TTGATGGACAGTTGAGCTTTATAATT 57.420 30.769 0.00 0.00 0.00 1.40
3255 4437 8.579850 TTTGATGGACAGTTGAGCTTTATAAT 57.420 30.769 0.00 0.00 0.00 1.28
3256 4438 7.994425 TTTGATGGACAGTTGAGCTTTATAA 57.006 32.000 0.00 0.00 0.00 0.98
3257 4439 7.360861 CGTTTTGATGGACAGTTGAGCTTTATA 60.361 37.037 0.00 0.00 0.00 0.98
3258 4440 6.568462 CGTTTTGATGGACAGTTGAGCTTTAT 60.568 38.462 0.00 0.00 0.00 1.40
3259 4441 5.277779 CGTTTTGATGGACAGTTGAGCTTTA 60.278 40.000 0.00 0.00 0.00 1.85
3260 4442 4.498009 CGTTTTGATGGACAGTTGAGCTTT 60.498 41.667 0.00 0.00 0.00 3.51
3261 4443 3.003689 CGTTTTGATGGACAGTTGAGCTT 59.996 43.478 0.00 0.00 0.00 3.74
3262 4444 2.549754 CGTTTTGATGGACAGTTGAGCT 59.450 45.455 0.00 0.00 0.00 4.09
3263 4445 2.290641 ACGTTTTGATGGACAGTTGAGC 59.709 45.455 0.00 0.00 0.00 4.26
3264 4446 3.058914 GGACGTTTTGATGGACAGTTGAG 60.059 47.826 0.00 0.00 0.00 3.02
3265 4447 2.875933 GGACGTTTTGATGGACAGTTGA 59.124 45.455 0.00 0.00 0.00 3.18
3266 4448 2.349438 CGGACGTTTTGATGGACAGTTG 60.349 50.000 0.00 0.00 0.00 3.16
3267 4449 1.871039 CGGACGTTTTGATGGACAGTT 59.129 47.619 0.00 0.00 0.00 3.16
3268 4450 1.508632 CGGACGTTTTGATGGACAGT 58.491 50.000 0.00 0.00 0.00 3.55
3269 4451 0.796312 CCGGACGTTTTGATGGACAG 59.204 55.000 0.00 0.00 0.00 3.51
3270 4452 0.393448 TCCGGACGTTTTGATGGACA 59.607 50.000 0.00 0.00 0.00 4.02
3271 4453 0.794473 GTCCGGACGTTTTGATGGAC 59.206 55.000 20.85 0.00 39.10 4.02
3272 4454 0.393448 TGTCCGGACGTTTTGATGGA 59.607 50.000 28.70 4.91 0.00 3.41
3273 4455 0.796312 CTGTCCGGACGTTTTGATGG 59.204 55.000 28.70 6.96 0.00 3.51
3274 4456 0.165944 GCTGTCCGGACGTTTTGATG 59.834 55.000 28.70 11.97 0.00 3.07
3275 4457 0.034896 AGCTGTCCGGACGTTTTGAT 59.965 50.000 28.70 12.40 0.00 2.57
3276 4458 0.599204 GAGCTGTCCGGACGTTTTGA 60.599 55.000 28.70 9.96 0.00 2.69
3277 4459 0.878523 TGAGCTGTCCGGACGTTTTG 60.879 55.000 28.70 16.48 0.00 2.44
3278 4460 0.600255 CTGAGCTGTCCGGACGTTTT 60.600 55.000 28.70 14.59 0.00 2.43
3279 4461 1.006102 CTGAGCTGTCCGGACGTTT 60.006 57.895 28.70 16.42 0.00 3.60
3280 4462 2.143594 GACTGAGCTGTCCGGACGTT 62.144 60.000 28.70 20.54 0.00 3.99
3281 4463 2.597805 ACTGAGCTGTCCGGACGT 60.598 61.111 28.70 16.62 0.00 4.34
3282 4464 2.179517 GACTGAGCTGTCCGGACG 59.820 66.667 28.70 22.93 0.00 4.79
3283 4465 2.574399 GGACTGAGCTGTCCGGAC 59.426 66.667 28.17 28.17 45.69 4.79
3288 4470 1.080434 GTGTCCGGACTGAGCTGTC 60.080 63.158 33.39 6.04 36.31 3.51
3289 4471 1.115930 AAGTGTCCGGACTGAGCTGT 61.116 55.000 33.39 10.42 0.00 4.40
3290 4472 0.034059 AAAGTGTCCGGACTGAGCTG 59.966 55.000 33.39 0.00 0.00 4.24
3291 4473 0.759346 AAAAGTGTCCGGACTGAGCT 59.241 50.000 33.39 22.04 0.00 4.09
3292 4474 1.264288 CAAAAAGTGTCCGGACTGAGC 59.736 52.381 33.39 20.34 0.00 4.26
3293 4475 2.561569 ACAAAAAGTGTCCGGACTGAG 58.438 47.619 33.39 18.20 34.38 3.35
3294 4476 2.702592 ACAAAAAGTGTCCGGACTGA 57.297 45.000 33.39 13.58 34.38 3.41
3303 4485 3.442273 ACGTGTTGGATGACAAAAAGTGT 59.558 39.130 0.00 0.00 45.74 3.55
3304 4486 3.790820 CACGTGTTGGATGACAAAAAGTG 59.209 43.478 7.58 2.80 45.69 3.16
3305 4487 3.442273 ACACGTGTTGGATGACAAAAAGT 59.558 39.130 17.22 0.00 39.21 2.66
3306 4488 4.027572 ACACGTGTTGGATGACAAAAAG 57.972 40.909 17.22 0.00 41.58 2.27
3307 4489 5.297029 TGATACACGTGTTGGATGACAAAAA 59.703 36.000 28.55 3.68 41.58 1.94
3308 4490 4.816925 TGATACACGTGTTGGATGACAAAA 59.183 37.500 28.55 3.91 41.58 2.44
3309 4491 4.381411 TGATACACGTGTTGGATGACAAA 58.619 39.130 28.55 4.51 41.58 2.83
3310 4492 3.996480 TGATACACGTGTTGGATGACAA 58.004 40.909 28.55 5.36 36.54 3.18
3311 4493 3.669251 TGATACACGTGTTGGATGACA 57.331 42.857 28.55 6.21 0.00 3.58
3312 4494 4.665645 CGTTTGATACACGTGTTGGATGAC 60.666 45.833 28.55 16.62 32.80 3.06
3313 4495 3.430556 CGTTTGATACACGTGTTGGATGA 59.569 43.478 28.55 7.92 32.80 2.92
3314 4496 3.731855 CGTTTGATACACGTGTTGGATG 58.268 45.455 28.55 10.27 32.80 3.51
3323 4505 2.407361 GTCCACTGACGTTTGATACACG 59.593 50.000 0.00 0.00 43.52 4.49
3324 4506 2.735134 GGTCCACTGACGTTTGATACAC 59.265 50.000 0.00 0.00 42.73 2.90
3325 4507 2.608506 CGGTCCACTGACGTTTGATACA 60.609 50.000 0.00 0.00 42.73 2.29
3326 4508 1.990563 CGGTCCACTGACGTTTGATAC 59.009 52.381 0.00 0.00 42.73 2.24
3327 4509 1.067425 CCGGTCCACTGACGTTTGATA 60.067 52.381 0.00 0.00 42.73 2.15
3328 4510 0.320421 CCGGTCCACTGACGTTTGAT 60.320 55.000 0.00 0.00 42.73 2.57
3329 4511 1.068417 CCGGTCCACTGACGTTTGA 59.932 57.895 0.00 0.00 42.73 2.69
3330 4512 1.219522 GACCGGTCCACTGACGTTTG 61.220 60.000 24.75 0.00 42.73 2.93
3331 4513 1.068585 GACCGGTCCACTGACGTTT 59.931 57.895 24.75 0.00 42.73 3.60
3332 4514 1.831286 AGACCGGTCCACTGACGTT 60.831 57.895 30.82 6.14 42.73 3.99
3333 4515 2.203451 AGACCGGTCCACTGACGT 60.203 61.111 30.82 6.96 42.73 4.34
3334 4516 2.258591 CAGACCGGTCCACTGACG 59.741 66.667 30.82 7.21 42.73 4.35
3335 4517 2.048127 GCAGACCGGTCCACTGAC 60.048 66.667 30.82 14.37 40.98 3.51
3336 4518 2.523168 TGCAGACCGGTCCACTGA 60.523 61.111 30.82 8.11 34.07 3.41
3337 4519 2.357517 GTGCAGACCGGTCCACTG 60.358 66.667 30.82 22.74 35.14 3.66
3338 4520 3.991051 CGTGCAGACCGGTCCACT 61.991 66.667 30.82 10.29 0.00 4.00
3339 4521 3.802418 AACGTGCAGACCGGTCCAC 62.802 63.158 30.82 27.75 0.00 4.02
3340 4522 3.509137 GAACGTGCAGACCGGTCCA 62.509 63.158 30.82 19.63 36.05 4.02
3341 4523 2.737376 GAACGTGCAGACCGGTCC 60.737 66.667 30.82 17.09 36.05 4.46
3342 4524 3.103911 CGAACGTGCAGACCGGTC 61.104 66.667 27.67 27.67 38.63 4.79
3343 4525 2.430382 ATTCGAACGTGCAGACCGGT 62.430 55.000 6.92 6.92 0.00 5.28
3344 4526 1.289109 AATTCGAACGTGCAGACCGG 61.289 55.000 0.00 0.00 0.00 5.28
3345 4527 0.093026 GAATTCGAACGTGCAGACCG 59.907 55.000 0.00 0.00 0.00 4.79
3346 4528 1.429463 AGAATTCGAACGTGCAGACC 58.571 50.000 0.00 0.00 0.00 3.85
3347 4529 3.427528 TGTAAGAATTCGAACGTGCAGAC 59.572 43.478 0.00 0.00 0.00 3.51
3348 4530 3.644823 TGTAAGAATTCGAACGTGCAGA 58.355 40.909 0.00 0.00 0.00 4.26
3349 4531 4.383774 TTGTAAGAATTCGAACGTGCAG 57.616 40.909 0.00 0.00 0.00 4.41
3350 4532 4.797693 TTTGTAAGAATTCGAACGTGCA 57.202 36.364 0.00 0.00 0.00 4.57
3351 4533 4.084718 CGTTTTGTAAGAATTCGAACGTGC 59.915 41.667 0.00 0.00 0.00 5.34
3352 4534 4.605594 CCGTTTTGTAAGAATTCGAACGTG 59.394 41.667 0.00 11.99 0.00 4.49
3353 4535 4.507388 TCCGTTTTGTAAGAATTCGAACGT 59.493 37.500 0.00 0.00 0.00 3.99
3354 4536 5.009048 TCCGTTTTGTAAGAATTCGAACG 57.991 39.130 0.00 16.01 0.00 3.95
3355 4537 5.338822 GCTTCCGTTTTGTAAGAATTCGAAC 59.661 40.000 0.00 3.18 0.00 3.95
3356 4538 5.007823 TGCTTCCGTTTTGTAAGAATTCGAA 59.992 36.000 0.00 0.00 0.00 3.71
3357 4539 4.512198 TGCTTCCGTTTTGTAAGAATTCGA 59.488 37.500 0.00 0.00 0.00 3.71
3358 4540 4.778904 TGCTTCCGTTTTGTAAGAATTCG 58.221 39.130 0.00 0.00 0.00 3.34
3359 4541 5.997385 TCTGCTTCCGTTTTGTAAGAATTC 58.003 37.500 0.00 0.00 0.00 2.17
3360 4542 6.431234 AGATCTGCTTCCGTTTTGTAAGAATT 59.569 34.615 0.00 0.00 0.00 2.17
3361 4543 5.940470 AGATCTGCTTCCGTTTTGTAAGAAT 59.060 36.000 0.00 0.00 0.00 2.40
3362 4544 5.305585 AGATCTGCTTCCGTTTTGTAAGAA 58.694 37.500 0.00 0.00 0.00 2.52
3363 4545 4.894784 AGATCTGCTTCCGTTTTGTAAGA 58.105 39.130 0.00 0.00 0.00 2.10
3364 4546 5.292101 CCTAGATCTGCTTCCGTTTTGTAAG 59.708 44.000 5.18 0.00 0.00 2.34
3365 4547 5.175859 CCTAGATCTGCTTCCGTTTTGTAA 58.824 41.667 5.18 0.00 0.00 2.41
3366 4548 4.382685 CCCTAGATCTGCTTCCGTTTTGTA 60.383 45.833 5.18 0.00 0.00 2.41
3367 4549 3.600388 CCTAGATCTGCTTCCGTTTTGT 58.400 45.455 5.18 0.00 0.00 2.83
3368 4550 2.939103 CCCTAGATCTGCTTCCGTTTTG 59.061 50.000 5.18 0.00 0.00 2.44
3369 4551 2.092914 CCCCTAGATCTGCTTCCGTTTT 60.093 50.000 5.18 0.00 0.00 2.43
3370 4552 1.486726 CCCCTAGATCTGCTTCCGTTT 59.513 52.381 5.18 0.00 0.00 3.60
3371 4553 1.123928 CCCCTAGATCTGCTTCCGTT 58.876 55.000 5.18 0.00 0.00 4.44
3372 4554 0.760945 CCCCCTAGATCTGCTTCCGT 60.761 60.000 5.18 0.00 0.00 4.69
3373 4555 0.760945 ACCCCCTAGATCTGCTTCCG 60.761 60.000 5.18 0.00 0.00 4.30
3374 4556 1.512735 AACCCCCTAGATCTGCTTCC 58.487 55.000 5.18 0.00 0.00 3.46
3375 4557 2.239907 ACAAACCCCCTAGATCTGCTTC 59.760 50.000 5.18 0.00 0.00 3.86
3376 4558 2.025887 CACAAACCCCCTAGATCTGCTT 60.026 50.000 5.18 0.00 0.00 3.91
3377 4559 1.561542 CACAAACCCCCTAGATCTGCT 59.438 52.381 5.18 0.00 0.00 4.24
3378 4560 1.408822 CCACAAACCCCCTAGATCTGC 60.409 57.143 5.18 0.00 0.00 4.26
3379 4561 1.212935 CCCACAAACCCCCTAGATCTG 59.787 57.143 5.18 0.00 0.00 2.90
3380 4562 1.596496 CCCACAAACCCCCTAGATCT 58.404 55.000 0.00 0.00 0.00 2.75
3381 4563 0.106669 GCCCACAAACCCCCTAGATC 60.107 60.000 0.00 0.00 0.00 2.75
3382 4564 1.921869 CGCCCACAAACCCCCTAGAT 61.922 60.000 0.00 0.00 0.00 1.98
3383 4565 2.598787 CGCCCACAAACCCCCTAGA 61.599 63.158 0.00 0.00 0.00 2.43
3384 4566 2.045340 CGCCCACAAACCCCCTAG 60.045 66.667 0.00 0.00 0.00 3.02
3385 4567 2.855014 ACGCCCACAAACCCCCTA 60.855 61.111 0.00 0.00 0.00 3.53
3386 4568 4.280019 GACGCCCACAAACCCCCT 62.280 66.667 0.00 0.00 0.00 4.79
3389 4571 4.629523 TCGGACGCCCACAAACCC 62.630 66.667 0.00 0.00 0.00 4.11
3390 4572 2.592287 TTCGGACGCCCACAAACC 60.592 61.111 0.00 0.00 0.00 3.27
3391 4573 2.113131 CTGTTCGGACGCCCACAAAC 62.113 60.000 0.00 0.00 0.00 2.93
3392 4574 1.890041 CTGTTCGGACGCCCACAAA 60.890 57.895 0.00 0.00 0.00 2.83
3393 4575 2.280524 CTGTTCGGACGCCCACAA 60.281 61.111 0.00 0.00 0.00 3.33
3394 4576 4.980805 GCTGTTCGGACGCCCACA 62.981 66.667 0.00 0.00 0.00 4.17
3403 4585 4.077184 TACTGGGCGGCTGTTCGG 62.077 66.667 9.56 0.00 0.00 4.30
3404 4586 2.509336 CTACTGGGCGGCTGTTCG 60.509 66.667 9.56 0.29 0.00 3.95
3405 4587 2.125106 CCTACTGGGCGGCTGTTC 60.125 66.667 9.56 0.00 0.00 3.18
3414 4596 1.445582 GTGTCGAACGCCTACTGGG 60.446 63.158 0.00 0.00 38.36 4.45
3415 4597 1.445582 GGTGTCGAACGCCTACTGG 60.446 63.158 9.47 0.00 45.06 4.00
3416 4598 4.164252 GGTGTCGAACGCCTACTG 57.836 61.111 9.47 0.00 45.06 2.74
3424 4606 4.629523 TTGGCCGGGGTGTCGAAC 62.630 66.667 2.18 0.00 0.00 3.95
3425 4607 4.629523 GTTGGCCGGGGTGTCGAA 62.630 66.667 2.18 0.00 0.00 3.71
3432 4614 3.917760 TTTTTGCGTTGGCCGGGG 61.918 61.111 2.18 0.00 38.85 5.73
3433 4615 2.660224 GTTTTTGCGTTGGCCGGG 60.660 61.111 2.18 0.00 38.85 5.73
3434 4616 2.636778 AAGGTTTTTGCGTTGGCCGG 62.637 55.000 0.00 0.00 38.85 6.13
3435 4617 1.227118 AAGGTTTTTGCGTTGGCCG 60.227 52.632 0.00 0.00 38.85 6.13
3436 4618 1.771073 GCAAGGTTTTTGCGTTGGCC 61.771 55.000 0.00 0.00 38.85 5.36
3437 4619 1.641140 GCAAGGTTTTTGCGTTGGC 59.359 52.632 0.00 0.00 35.58 4.52
3438 4620 0.460987 TGGCAAGGTTTTTGCGTTGG 60.461 50.000 5.87 0.00 45.78 3.77
3439 4621 0.929615 CTGGCAAGGTTTTTGCGTTG 59.070 50.000 5.87 0.00 45.78 4.10
3440 4622 0.179086 CCTGGCAAGGTTTTTGCGTT 60.179 50.000 0.00 0.00 45.78 4.84
3441 4623 1.040339 TCCTGGCAAGGTTTTTGCGT 61.040 50.000 7.13 0.00 45.78 5.24
3442 4624 0.318955 CTCCTGGCAAGGTTTTTGCG 60.319 55.000 7.13 0.00 45.78 4.85
3443 4625 0.601046 GCTCCTGGCAAGGTTTTTGC 60.601 55.000 7.13 3.39 44.82 3.68
3444 4626 0.033920 GGCTCCTGGCAAGGTTTTTG 59.966 55.000 7.13 0.00 44.82 2.44
3445 4627 0.398381 TGGCTCCTGGCAAGGTTTTT 60.398 50.000 7.13 0.00 46.03 1.94
3446 4628 1.232792 TGGCTCCTGGCAAGGTTTT 59.767 52.632 7.13 0.00 46.03 2.43
3447 4629 2.934369 TGGCTCCTGGCAAGGTTT 59.066 55.556 7.13 0.00 46.03 3.27
3454 4636 1.475682 CAGAAAATCTTGGCTCCTGGC 59.524 52.381 0.00 0.00 40.90 4.85
3455 4637 2.751806 GTCAGAAAATCTTGGCTCCTGG 59.248 50.000 0.00 0.00 0.00 4.45
3456 4638 3.683802 AGTCAGAAAATCTTGGCTCCTG 58.316 45.455 0.00 0.00 0.00 3.86
3457 4639 4.621747 CGTAGTCAGAAAATCTTGGCTCCT 60.622 45.833 0.00 0.00 0.00 3.69
3458 4640 3.619038 CGTAGTCAGAAAATCTTGGCTCC 59.381 47.826 0.00 0.00 0.00 4.70
3459 4641 4.849111 CGTAGTCAGAAAATCTTGGCTC 57.151 45.455 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.