Multiple sequence alignment - TraesCS7B01G038600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G038600 chr7B 100.000 3203 0 0 1 3203 37598893 37602095 0.000000e+00 5915.0
1 TraesCS7B01G038600 chr7B 96.915 2269 55 5 760 3017 67352666 67354930 0.000000e+00 3788.0
2 TraesCS7B01G038600 chr7B 93.661 1262 74 2 968 2229 37419992 37421247 0.000000e+00 1882.0
3 TraesCS7B01G038600 chr7B 98.625 509 7 0 2 510 67352161 67352669 0.000000e+00 902.0
4 TraesCS7B01G038600 chr7B 83.871 279 19 6 506 760 21312815 21313091 3.190000e-60 243.0
5 TraesCS7B01G038600 chr7B 89.404 151 13 2 2799 2946 140933939 140933789 1.520000e-43 187.0
6 TraesCS7B01G038600 chr7B 73.712 563 109 25 1000 1538 666554834 666554287 1.960000e-42 183.0
7 TraesCS7B01G038600 chr7B 96.104 77 3 0 2869 2945 140933906 140933982 3.350000e-25 126.0
8 TraesCS7B01G038600 chr7B 87.037 108 14 0 2843 2950 741390245 741390138 4.340000e-24 122.0
9 TraesCS7B01G038600 chr7D 93.454 1268 77 3 962 2229 88143698 88142437 0.000000e+00 1877.0
10 TraesCS7B01G038600 chr7D 84.397 282 17 8 509 765 112246040 112245761 5.300000e-63 252.0
11 TraesCS7B01G038600 chr7D 88.000 150 15 2 2799 2945 175648398 175648249 1.180000e-39 174.0
12 TraesCS7B01G038600 chr7D 85.981 107 15 0 2840 2946 602626017 602625911 7.260000e-22 115.0
13 TraesCS7B01G038600 chr7D 92.683 41 3 0 2799 2839 125896831 125896791 3.450000e-05 60.2
14 TraesCS7B01G038600 chr7A 91.279 1032 66 11 1407 2417 89809868 89808840 0.000000e+00 1386.0
15 TraesCS7B01G038600 chr7A 89.722 467 41 3 949 1410 89827307 89826843 9.900000e-165 590.0
16 TraesCS7B01G038600 chr7A 85.366 287 14 6 503 764 610710435 610710718 4.070000e-69 272.0
17 TraesCS7B01G038600 chr7A 85.017 287 15 8 509 769 627156707 627156423 1.890000e-67 267.0
18 TraesCS7B01G038600 chr7A 83.746 283 19 7 507 764 14291849 14291569 3.190000e-60 243.0
19 TraesCS7B01G038600 chr5A 84.828 290 16 6 500 764 67472656 67472942 1.890000e-67 267.0
20 TraesCS7B01G038600 chr5A 83.451 284 20 8 509 767 19539959 19539678 4.130000e-59 239.0
21 TraesCS7B01G038600 chr5A 94.304 158 5 3 4 159 702641082 702640927 4.130000e-59 239.0
22 TraesCS7B01G038600 chr5A 97.059 34 1 0 2799 2832 145665974 145666007 1.240000e-04 58.4
23 TraesCS7B01G038600 chr5B 85.053 281 15 7 507 762 505810318 505810040 8.810000e-66 261.0
24 TraesCS7B01G038600 chr5B 84.397 282 17 7 507 763 659598958 659599237 5.300000e-63 252.0
25 TraesCS7B01G038600 chr5B 83.566 286 20 7 507 767 310044400 310044117 3.190000e-60 243.0
26 TraesCS7B01G038600 chr5B 92.994 157 11 0 3014 3170 245602266 245602422 2.490000e-56 230.0
27 TraesCS7B01G038600 chr3A 84.669 287 17 5 504 765 481022850 481022566 8.810000e-66 261.0
28 TraesCS7B01G038600 chr3A 77.465 213 41 6 1986 2194 13853300 13853509 1.560000e-23 121.0
29 TraesCS7B01G038600 chr6B 84.321 287 17 6 502 763 5274681 5274964 4.100000e-64 255.0
30 TraesCS7B01G038600 chr6B 94.304 158 7 2 3018 3174 632557059 632556903 1.150000e-59 241.0
31 TraesCS7B01G038600 chr6B 83.509 285 18 9 509 766 48564825 48565107 4.130000e-59 239.0
32 TraesCS7B01G038600 chr5D 97.279 147 2 1 4 148 21459354 21459500 6.860000e-62 248.0
33 TraesCS7B01G038600 chr5D 90.566 106 10 0 2840 2945 176106952 176107057 1.200000e-29 141.0
34 TraesCS7B01G038600 chr6A 84.043 282 18 5 506 762 2947324 2947045 2.470000e-61 246.0
35 TraesCS7B01G038600 chr2B 94.937 158 6 2 3018 3174 150586155 150586311 2.470000e-61 246.0
36 TraesCS7B01G038600 chr2B 94.268 157 9 0 3018 3174 694693074 694693230 1.150000e-59 241.0
37 TraesCS7B01G038600 chr2B 93.631 157 10 0 3018 3174 599206712 599206868 5.340000e-58 235.0
38 TraesCS7B01G038600 chr2B 93.631 157 8 2 3019 3174 572263371 572263526 1.920000e-57 233.0
39 TraesCS7B01G038600 chr2B 86.207 145 20 0 1361 1505 11052 10908 1.190000e-34 158.0
40 TraesCS7B01G038600 chr1B 96.667 150 2 2 2 148 522828890 522828741 2.470000e-61 246.0
41 TraesCS7B01G038600 chr1B 96.599 147 5 0 2 148 514435203 514435349 8.880000e-61 244.0
42 TraesCS7B01G038600 chr1B 95.973 149 4 2 2 148 40727529 40727677 1.150000e-59 241.0
43 TraesCS7B01G038600 chr1B 95.973 149 4 2 2 148 652577904 652577756 1.150000e-59 241.0
44 TraesCS7B01G038600 chr2D 95.973 149 4 1 2 148 310722176 310722028 1.150000e-59 241.0
45 TraesCS7B01G038600 chr2D 93.631 157 10 0 3018 3174 131286556 131286712 5.340000e-58 235.0
46 TraesCS7B01G038600 chr2D 85.294 170 22 3 1373 1541 26537431 26537264 4.250000e-39 172.0
47 TraesCS7B01G038600 chr2D 87.755 147 13 2 2799 2945 359662779 359662920 1.980000e-37 167.0
48 TraesCS7B01G038600 chr2D 91.089 101 9 0 2845 2945 454847296 454847196 1.550000e-28 137.0
49 TraesCS7B01G038600 chr2D 86.325 117 14 2 2840 2956 154109650 154109764 3.350000e-25 126.0
50 TraesCS7B01G038600 chr1D 96.575 146 3 1 4 147 10439850 10439705 1.150000e-59 241.0
51 TraesCS7B01G038600 chr1D 83.509 285 19 9 503 762 52666693 52666974 1.150000e-59 241.0
52 TraesCS7B01G038600 chr1A 83.392 283 20 7 507 764 497760141 497759861 1.490000e-58 237.0
53 TraesCS7B01G038600 chr1A 84.884 258 11 6 507 739 258147452 258147706 5.340000e-58 235.0
54 TraesCS7B01G038600 chrUn 93.671 158 8 2 3018 3174 305559867 305559711 5.340000e-58 235.0
55 TraesCS7B01G038600 chrUn 93.671 158 8 2 3018 3174 305564157 305564001 5.340000e-58 235.0
56 TraesCS7B01G038600 chrUn 84.831 178 25 2 1373 1549 17151974 17151798 9.130000e-41 178.0
57 TraesCS7B01G038600 chrUn 84.831 178 25 2 1373 1549 292609956 292610132 9.130000e-41 178.0
58 TraesCS7B01G038600 chrUn 91.111 45 3 1 2799 2843 25042716 25042673 3.450000e-05 60.2
59 TraesCS7B01G038600 chr3B 79.703 202 35 5 1996 2194 6968075 6968273 1.200000e-29 141.0
60 TraesCS7B01G038600 chr4D 90.385 104 8 2 2843 2945 7595087 7594985 5.570000e-28 135.0
61 TraesCS7B01G038600 chr6D 97.059 34 1 0 2799 2832 453657834 453657867 1.240000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G038600 chr7B 37598893 37602095 3202 False 5915 5915 100.000 1 3203 1 chr7B.!!$F3 3202
1 TraesCS7B01G038600 chr7B 67352161 67354930 2769 False 2345 3788 97.770 2 3017 2 chr7B.!!$F5 3015
2 TraesCS7B01G038600 chr7B 37419992 37421247 1255 False 1882 1882 93.661 968 2229 1 chr7B.!!$F2 1261
3 TraesCS7B01G038600 chr7D 88142437 88143698 1261 True 1877 1877 93.454 962 2229 1 chr7D.!!$R1 1267
4 TraesCS7B01G038600 chr7A 89808840 89809868 1028 True 1386 1386 91.279 1407 2417 1 chr7A.!!$R2 1010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 758 0.034863 TTCTCCCCATTGTTACCCGC 60.035 55.0 0.0 0.0 0.00 6.13 F
819 820 0.036732 TGCCAGGTGGTGAATGAGAC 59.963 55.0 0.0 0.0 37.57 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1820 3.129502 TAGTAGCCGTCGTGCGCT 61.130 61.111 9.73 0.25 39.71 5.92 R
2650 2686 3.517500 ACCACTCCTCTTCAAGAATCTCC 59.482 47.826 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.053917 TGCTTTACATTTAGGGGAGGGTC 60.054 47.826 0.00 0.00 0.00 4.46
78 79 3.206150 CATGTATGGCTGTTACACCCTC 58.794 50.000 0.00 0.00 32.70 4.30
485 486 5.278758 GGGAGAAGAGATTAACGAGAGATGG 60.279 48.000 0.00 0.00 0.00 3.51
486 487 5.533154 GGAGAAGAGATTAACGAGAGATGGA 59.467 44.000 0.00 0.00 0.00 3.41
504 505 3.631250 TGGATCCAGCCTGTAATTTTCC 58.369 45.455 11.44 0.00 0.00 3.13
506 507 2.871096 TCCAGCCTGTAATTTTCCGT 57.129 45.000 0.00 0.00 0.00 4.69
507 508 3.985019 TCCAGCCTGTAATTTTCCGTA 57.015 42.857 0.00 0.00 0.00 4.02
508 509 4.289238 TCCAGCCTGTAATTTTCCGTAA 57.711 40.909 0.00 0.00 0.00 3.18
509 510 4.258543 TCCAGCCTGTAATTTTCCGTAAG 58.741 43.478 0.00 0.00 0.00 2.34
524 525 2.014128 CGTAAGGCTGGTTACAATGGG 58.986 52.381 0.00 0.00 33.20 4.00
525 526 1.749063 GTAAGGCTGGTTACAATGGGC 59.251 52.381 0.00 0.00 33.73 5.36
526 527 0.114168 AAGGCTGGTTACAATGGGCA 59.886 50.000 0.00 0.00 0.00 5.36
527 528 0.114168 AGGCTGGTTACAATGGGCAA 59.886 50.000 0.00 0.00 0.00 4.52
528 529 0.532115 GGCTGGTTACAATGGGCAAG 59.468 55.000 0.00 0.00 0.00 4.01
529 530 1.544724 GCTGGTTACAATGGGCAAGA 58.455 50.000 0.00 0.00 0.00 3.02
530 531 1.892474 GCTGGTTACAATGGGCAAGAA 59.108 47.619 0.00 0.00 0.00 2.52
531 532 2.352715 GCTGGTTACAATGGGCAAGAAC 60.353 50.000 0.00 0.00 0.00 3.01
532 533 2.890311 CTGGTTACAATGGGCAAGAACA 59.110 45.455 0.00 0.00 0.00 3.18
533 534 3.505386 TGGTTACAATGGGCAAGAACAT 58.495 40.909 0.00 0.00 0.00 2.71
534 535 4.667573 TGGTTACAATGGGCAAGAACATA 58.332 39.130 0.00 0.00 0.00 2.29
535 536 5.080337 TGGTTACAATGGGCAAGAACATAA 58.920 37.500 0.00 0.00 0.00 1.90
536 537 5.184864 TGGTTACAATGGGCAAGAACATAAG 59.815 40.000 0.00 0.00 0.00 1.73
537 538 3.874392 ACAATGGGCAAGAACATAAGC 57.126 42.857 0.00 0.00 0.00 3.09
538 539 3.434309 ACAATGGGCAAGAACATAAGCT 58.566 40.909 0.00 0.00 0.00 3.74
539 540 4.599041 ACAATGGGCAAGAACATAAGCTA 58.401 39.130 0.00 0.00 0.00 3.32
540 541 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
541 542 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
542 543 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
543 544 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
544 545 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
545 546 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
546 547 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
547 548 7.046033 GGGCAAGAACATAAGCTAGTAACTTA 58.954 38.462 0.00 0.00 34.29 2.24
548 549 7.715686 GGGCAAGAACATAAGCTAGTAACTTAT 59.284 37.037 0.76 0.76 40.19 1.73
549 550 9.760077 GGCAAGAACATAAGCTAGTAACTTATA 57.240 33.333 5.67 0.00 38.07 0.98
576 577 8.709272 ACTTCCCTAGACTATGTTAATACCTC 57.291 38.462 0.00 0.00 0.00 3.85
577 578 8.512813 ACTTCCCTAGACTATGTTAATACCTCT 58.487 37.037 0.00 0.00 0.00 3.69
585 586 9.756571 AGACTATGTTAATACCTCTATAGTGGG 57.243 37.037 21.82 16.23 33.04 4.61
586 587 9.531158 GACTATGTTAATACCTCTATAGTGGGT 57.469 37.037 21.82 20.09 33.04 4.51
591 592 9.940974 TGTTAATACCTCTATAGTGGGTAGAAA 57.059 33.333 21.82 16.80 38.72 2.52
593 594 9.940974 TTAATACCTCTATAGTGGGTAGAAACA 57.059 33.333 21.82 6.83 38.72 2.83
595 596 9.448587 AATACCTCTATAGTGGGTAGAAACATT 57.551 33.333 21.82 12.55 38.72 2.71
596 597 7.750947 ACCTCTATAGTGGGTAGAAACATTT 57.249 36.000 21.82 0.00 33.22 2.32
597 598 8.849543 ACCTCTATAGTGGGTAGAAACATTTA 57.150 34.615 21.82 0.00 33.22 1.40
598 599 9.448587 ACCTCTATAGTGGGTAGAAACATTTAT 57.551 33.333 21.82 0.00 33.22 1.40
599 600 9.712305 CCTCTATAGTGGGTAGAAACATTTATG 57.288 37.037 12.29 0.00 0.00 1.90
604 605 9.832445 ATAGTGGGTAGAAACATTTATGTAGTG 57.168 33.333 0.00 0.00 40.80 2.74
605 606 7.686434 AGTGGGTAGAAACATTTATGTAGTGT 58.314 34.615 0.00 0.00 40.80 3.55
606 607 7.822822 AGTGGGTAGAAACATTTATGTAGTGTC 59.177 37.037 0.00 0.00 40.80 3.67
607 608 7.604927 GTGGGTAGAAACATTTATGTAGTGTCA 59.395 37.037 0.00 0.00 40.80 3.58
608 609 8.325787 TGGGTAGAAACATTTATGTAGTGTCAT 58.674 33.333 0.00 0.00 40.80 3.06
609 610 8.612619 GGGTAGAAACATTTATGTAGTGTCATG 58.387 37.037 0.00 0.00 40.80 3.07
610 611 8.122952 GGTAGAAACATTTATGTAGTGTCATGC 58.877 37.037 0.00 0.00 40.80 4.06
611 612 7.686438 AGAAACATTTATGTAGTGTCATGCA 57.314 32.000 0.00 0.00 40.80 3.96
612 613 8.109705 AGAAACATTTATGTAGTGTCATGCAA 57.890 30.769 0.00 0.00 40.80 4.08
613 614 8.742777 AGAAACATTTATGTAGTGTCATGCAAT 58.257 29.630 0.00 0.00 40.80 3.56
614 615 8.692110 AAACATTTATGTAGTGTCATGCAATG 57.308 30.769 0.00 0.00 42.88 2.82
615 616 7.628769 ACATTTATGTAGTGTCATGCAATGA 57.371 32.000 14.47 0.00 45.34 2.57
662 663 8.856153 TCATTGTTTCTTAGCTAATTACCACA 57.144 30.769 6.64 3.68 0.00 4.17
663 664 9.290988 TCATTGTTTCTTAGCTAATTACCACAA 57.709 29.630 6.64 11.70 0.00 3.33
664 665 9.559958 CATTGTTTCTTAGCTAATTACCACAAG 57.440 33.333 6.64 0.00 0.00 3.16
665 666 7.141100 TGTTTCTTAGCTAATTACCACAAGC 57.859 36.000 6.64 0.00 35.16 4.01
666 667 6.712998 TGTTTCTTAGCTAATTACCACAAGCA 59.287 34.615 6.64 0.00 37.44 3.91
667 668 6.737254 TTCTTAGCTAATTACCACAAGCAC 57.263 37.500 6.64 0.00 37.44 4.40
668 669 5.183228 TCTTAGCTAATTACCACAAGCACC 58.817 41.667 6.64 0.00 37.44 5.01
669 670 3.721087 AGCTAATTACCACAAGCACCT 57.279 42.857 0.00 0.00 37.44 4.00
670 671 3.610911 AGCTAATTACCACAAGCACCTC 58.389 45.455 0.00 0.00 37.44 3.85
671 672 3.264450 AGCTAATTACCACAAGCACCTCT 59.736 43.478 0.00 0.00 37.44 3.69
672 673 3.623510 GCTAATTACCACAAGCACCTCTC 59.376 47.826 0.00 0.00 35.05 3.20
673 674 4.624125 GCTAATTACCACAAGCACCTCTCT 60.624 45.833 0.00 0.00 35.05 3.10
674 675 3.618690 ATTACCACAAGCACCTCTCTC 57.381 47.619 0.00 0.00 0.00 3.20
675 676 2.310779 TACCACAAGCACCTCTCTCT 57.689 50.000 0.00 0.00 0.00 3.10
676 677 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
677 678 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
678 679 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
679 680 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
680 681 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
681 682 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
682 683 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
683 684 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
684 685 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
685 686 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
686 687 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
687 688 8.557864 CAAGCACCTCTCTCTTCATTAAATATG 58.442 37.037 0.00 0.00 0.00 1.78
688 689 7.800092 AGCACCTCTCTCTTCATTAAATATGT 58.200 34.615 0.00 0.00 0.00 2.29
689 690 7.714377 AGCACCTCTCTCTTCATTAAATATGTG 59.286 37.037 0.00 0.00 0.00 3.21
690 691 7.497249 GCACCTCTCTCTTCATTAAATATGTGT 59.503 37.037 0.00 0.00 0.00 3.72
691 692 9.039870 CACCTCTCTCTTCATTAAATATGTGTC 57.960 37.037 0.00 0.00 0.00 3.67
692 693 8.762645 ACCTCTCTCTTCATTAAATATGTGTCA 58.237 33.333 0.00 0.00 0.00 3.58
693 694 9.039870 CCTCTCTCTTCATTAAATATGTGTCAC 57.960 37.037 0.00 0.00 0.00 3.67
694 695 9.591792 CTCTCTCTTCATTAAATATGTGTCACA 57.408 33.333 8.40 8.40 0.00 3.58
706 707 8.746922 AAATATGTGTCACATAAGCAAAGTTG 57.253 30.769 25.55 0.00 43.50 3.16
707 708 5.772825 ATGTGTCACATAAGCAAAGTTGT 57.227 34.783 16.99 0.00 36.99 3.32
708 709 6.875948 ATGTGTCACATAAGCAAAGTTGTA 57.124 33.333 16.99 0.00 36.99 2.41
709 710 6.875948 TGTGTCACATAAGCAAAGTTGTAT 57.124 33.333 0.18 0.00 0.00 2.29
710 711 7.270757 TGTGTCACATAAGCAAAGTTGTATT 57.729 32.000 0.18 0.00 0.00 1.89
711 712 7.138081 TGTGTCACATAAGCAAAGTTGTATTG 58.862 34.615 0.18 0.00 0.00 1.90
712 713 6.582295 GTGTCACATAAGCAAAGTTGTATTGG 59.418 38.462 0.00 0.00 0.00 3.16
713 714 6.488344 TGTCACATAAGCAAAGTTGTATTGGA 59.512 34.615 0.00 0.00 0.00 3.53
714 715 7.023575 GTCACATAAGCAAAGTTGTATTGGAG 58.976 38.462 0.00 0.00 0.00 3.86
715 716 6.714810 TCACATAAGCAAAGTTGTATTGGAGT 59.285 34.615 0.00 0.00 0.00 3.85
716 717 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
717 718 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
718 719 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
719 720 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
720 721 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
721 722 4.202010 GCAAAGTTGTATTGGAGTGTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
722 723 5.273170 CAAAGTTGTATTGGAGTGTGTGTG 58.727 41.667 0.00 0.00 0.00 3.82
723 724 4.415881 AGTTGTATTGGAGTGTGTGTGA 57.584 40.909 0.00 0.00 0.00 3.58
724 725 4.973168 AGTTGTATTGGAGTGTGTGTGAT 58.027 39.130 0.00 0.00 0.00 3.06
725 726 4.756642 AGTTGTATTGGAGTGTGTGTGATG 59.243 41.667 0.00 0.00 0.00 3.07
726 727 4.350368 TGTATTGGAGTGTGTGTGATGT 57.650 40.909 0.00 0.00 0.00 3.06
727 728 4.713553 TGTATTGGAGTGTGTGTGATGTT 58.286 39.130 0.00 0.00 0.00 2.71
728 729 5.859495 TGTATTGGAGTGTGTGTGATGTTA 58.141 37.500 0.00 0.00 0.00 2.41
729 730 6.472016 TGTATTGGAGTGTGTGTGATGTTAT 58.528 36.000 0.00 0.00 0.00 1.89
730 731 6.939730 TGTATTGGAGTGTGTGTGATGTTATT 59.060 34.615 0.00 0.00 0.00 1.40
731 732 5.940192 TTGGAGTGTGTGTGATGTTATTC 57.060 39.130 0.00 0.00 0.00 1.75
732 733 4.323417 TGGAGTGTGTGTGATGTTATTCC 58.677 43.478 0.00 0.00 0.00 3.01
733 734 4.041567 TGGAGTGTGTGTGATGTTATTCCT 59.958 41.667 0.00 0.00 0.00 3.36
734 735 5.247337 TGGAGTGTGTGTGATGTTATTCCTA 59.753 40.000 0.00 0.00 0.00 2.94
735 736 6.170506 GGAGTGTGTGTGATGTTATTCCTAA 58.829 40.000 0.00 0.00 0.00 2.69
736 737 6.313905 GGAGTGTGTGTGATGTTATTCCTAAG 59.686 42.308 0.00 0.00 0.00 2.18
737 738 6.769512 AGTGTGTGTGATGTTATTCCTAAGT 58.230 36.000 0.00 0.00 0.00 2.24
738 739 7.224297 AGTGTGTGTGATGTTATTCCTAAGTT 58.776 34.615 0.00 0.00 0.00 2.66
739 740 7.719633 AGTGTGTGTGATGTTATTCCTAAGTTT 59.280 33.333 0.00 0.00 0.00 2.66
740 741 8.015658 GTGTGTGTGATGTTATTCCTAAGTTTC 58.984 37.037 0.00 0.00 0.00 2.78
741 742 7.936847 TGTGTGTGATGTTATTCCTAAGTTTCT 59.063 33.333 0.00 0.00 0.00 2.52
742 743 8.443937 GTGTGTGATGTTATTCCTAAGTTTCTC 58.556 37.037 0.00 0.00 0.00 2.87
743 744 7.606456 TGTGTGATGTTATTCCTAAGTTTCTCC 59.394 37.037 0.00 0.00 0.00 3.71
744 745 7.065923 GTGTGATGTTATTCCTAAGTTTCTCCC 59.934 40.741 0.00 0.00 0.00 4.30
745 746 6.542735 GTGATGTTATTCCTAAGTTTCTCCCC 59.457 42.308 0.00 0.00 0.00 4.81
746 747 6.216662 TGATGTTATTCCTAAGTTTCTCCCCA 59.783 38.462 0.00 0.00 0.00 4.96
747 748 6.652205 TGTTATTCCTAAGTTTCTCCCCAT 57.348 37.500 0.00 0.00 0.00 4.00
748 749 7.039722 TGTTATTCCTAAGTTTCTCCCCATT 57.960 36.000 0.00 0.00 0.00 3.16
749 750 6.889722 TGTTATTCCTAAGTTTCTCCCCATTG 59.110 38.462 0.00 0.00 0.00 2.82
750 751 5.536497 ATTCCTAAGTTTCTCCCCATTGT 57.464 39.130 0.00 0.00 0.00 2.71
751 752 5.333566 TTCCTAAGTTTCTCCCCATTGTT 57.666 39.130 0.00 0.00 0.00 2.83
752 753 6.457159 TTCCTAAGTTTCTCCCCATTGTTA 57.543 37.500 0.00 0.00 0.00 2.41
753 754 5.812286 TCCTAAGTTTCTCCCCATTGTTAC 58.188 41.667 0.00 0.00 0.00 2.50
754 755 4.948004 CCTAAGTTTCTCCCCATTGTTACC 59.052 45.833 0.00 0.00 0.00 2.85
755 756 3.451402 AGTTTCTCCCCATTGTTACCC 57.549 47.619 0.00 0.00 0.00 3.69
756 757 2.089201 GTTTCTCCCCATTGTTACCCG 58.911 52.381 0.00 0.00 0.00 5.28
757 758 0.034863 TTCTCCCCATTGTTACCCGC 60.035 55.000 0.00 0.00 0.00 6.13
758 759 1.453197 CTCCCCATTGTTACCCGCC 60.453 63.158 0.00 0.00 0.00 6.13
819 820 0.036732 TGCCAGGTGGTGAATGAGAC 59.963 55.000 0.00 0.00 37.57 3.36
840 841 8.717821 TGAGACACTCGATTACTTTATTTTTGG 58.282 33.333 0.00 0.00 32.35 3.28
870 871 9.503427 GGCATCAACTTGACACTAAATAAATAC 57.497 33.333 0.00 0.00 0.00 1.89
932 933 4.540359 AAATCATAGCTGCAGCCAAAAA 57.460 36.364 34.39 17.10 43.38 1.94
959 965 6.774354 TGAACCGAACTCATACAAGTAAAC 57.226 37.500 0.00 0.00 0.00 2.01
1036 1047 4.680537 AGTCCTCGCCGGTGGTCT 62.681 66.667 16.49 9.43 0.00 3.85
1095 1106 2.037251 CCAACTCTCCTCTTTCGACCAA 59.963 50.000 0.00 0.00 0.00 3.67
2299 2316 4.277515 TGTGAAGGTCTCTTTGAGATGG 57.722 45.455 0.40 0.00 40.98 3.51
2370 2405 8.902806 TCTCTTTGCAATGTATCCGAATAAAAT 58.097 29.630 11.67 0.00 0.00 1.82
2507 2542 9.447040 GAACTTTCTGATGTTGTACTTTTTACC 57.553 33.333 0.00 0.00 0.00 2.85
2610 2645 6.793505 AATAGAGGGAGTAGAACAAACGAT 57.206 37.500 0.00 0.00 0.00 3.73
2613 2648 4.712337 AGAGGGAGTAGAACAAACGATGAT 59.288 41.667 0.00 0.00 0.00 2.45
2650 2686 3.120546 CGGAAAGCAACACTACACTCATG 60.121 47.826 0.00 0.00 0.00 3.07
2691 2727 0.988145 TTGCCCCTCTGTCCTATGGG 60.988 60.000 0.00 0.00 39.37 4.00
2827 2863 7.863375 TGAGTTTGACCATAAATTTAACCAACG 59.137 33.333 1.21 0.00 0.00 4.10
2931 2967 1.841663 GCGGGCGCACTACATTATGG 61.842 60.000 8.62 0.00 41.49 2.74
3017 3053 5.866207 ACTCGATATTACCCCCTTCATTTC 58.134 41.667 0.00 0.00 0.00 2.17
3018 3054 5.368523 ACTCGATATTACCCCCTTCATTTCA 59.631 40.000 0.00 0.00 0.00 2.69
3019 3055 6.126594 ACTCGATATTACCCCCTTCATTTCAA 60.127 38.462 0.00 0.00 0.00 2.69
3020 3056 6.059484 TCGATATTACCCCCTTCATTTCAAC 58.941 40.000 0.00 0.00 0.00 3.18
3021 3057 5.049680 CGATATTACCCCCTTCATTTCAACG 60.050 44.000 0.00 0.00 0.00 4.10
3022 3058 2.500392 TACCCCCTTCATTTCAACGG 57.500 50.000 0.00 0.00 0.00 4.44
3023 3059 0.251608 ACCCCCTTCATTTCAACGGG 60.252 55.000 0.00 0.00 35.06 5.28
3024 3060 1.604147 CCCCCTTCATTTCAACGGGC 61.604 60.000 0.00 0.00 33.47 6.13
3025 3061 1.604147 CCCCTTCATTTCAACGGGCC 61.604 60.000 0.00 0.00 33.47 5.80
3026 3062 1.506262 CCTTCATTTCAACGGGCCG 59.494 57.895 27.06 27.06 0.00 6.13
3027 3063 0.958382 CCTTCATTTCAACGGGCCGA 60.958 55.000 35.78 10.47 0.00 5.54
3028 3064 0.168128 CTTCATTTCAACGGGCCGAC 59.832 55.000 35.78 0.00 0.00 4.79
3029 3065 1.238625 TTCATTTCAACGGGCCGACC 61.239 55.000 35.78 0.00 0.00 4.79
3046 3082 3.656045 CCAAACGGACGGCGCTTT 61.656 61.111 6.90 0.00 0.00 3.51
3047 3083 2.330041 CAAACGGACGGCGCTTTT 59.670 55.556 6.90 0.00 0.00 2.27
3048 3084 2.008697 CAAACGGACGGCGCTTTTG 61.009 57.895 6.90 7.73 0.00 2.44
3049 3085 2.474612 AAACGGACGGCGCTTTTGT 61.475 52.632 6.90 0.34 0.00 2.83
3050 3086 2.383027 AAACGGACGGCGCTTTTGTC 62.383 55.000 6.90 10.54 0.00 3.18
3051 3087 4.084888 CGGACGGCGCTTTTGTCC 62.085 66.667 22.77 22.77 46.91 4.02
3053 3089 4.736631 GACGGCGCTTTTGTCCGC 62.737 66.667 6.90 0.00 46.49 5.54
3057 3093 4.319249 GCGCTTTTGTCCGCTTTT 57.681 50.000 0.00 0.00 46.14 2.27
3058 3094 2.588731 GCGCTTTTGTCCGCTTTTT 58.411 47.368 0.00 0.00 46.14 1.94
3059 3095 0.229500 GCGCTTTTGTCCGCTTTTTG 59.771 50.000 0.00 0.00 46.14 2.44
3060 3096 1.555477 CGCTTTTGTCCGCTTTTTGT 58.445 45.000 0.00 0.00 0.00 2.83
3061 3097 1.516864 CGCTTTTGTCCGCTTTTTGTC 59.483 47.619 0.00 0.00 0.00 3.18
3062 3098 1.858458 GCTTTTGTCCGCTTTTTGTCC 59.142 47.619 0.00 0.00 0.00 4.02
3063 3099 2.737039 GCTTTTGTCCGCTTTTTGTCCA 60.737 45.455 0.00 0.00 0.00 4.02
3064 3100 3.716601 CTTTTGTCCGCTTTTTGTCCAT 58.283 40.909 0.00 0.00 0.00 3.41
3065 3101 3.810310 TTTGTCCGCTTTTTGTCCATT 57.190 38.095 0.00 0.00 0.00 3.16
3066 3102 3.810310 TTGTCCGCTTTTTGTCCATTT 57.190 38.095 0.00 0.00 0.00 2.32
3067 3103 3.090952 TGTCCGCTTTTTGTCCATTTG 57.909 42.857 0.00 0.00 0.00 2.32
3068 3104 2.223923 TGTCCGCTTTTTGTCCATTTGG 60.224 45.455 0.00 0.00 0.00 3.28
3069 3105 1.342819 TCCGCTTTTTGTCCATTTGGG 59.657 47.619 0.00 0.00 35.41 4.12
3070 3106 1.069978 CCGCTTTTTGTCCATTTGGGT 59.930 47.619 0.00 0.00 38.11 4.51
3071 3107 2.403259 CGCTTTTTGTCCATTTGGGTC 58.597 47.619 0.00 0.00 38.11 4.46
3072 3108 2.403259 GCTTTTTGTCCATTTGGGTCG 58.597 47.619 0.00 0.00 38.11 4.79
3073 3109 2.866065 GCTTTTTGTCCATTTGGGTCGG 60.866 50.000 0.00 0.00 38.11 4.79
3074 3110 0.676736 TTTTGTCCATTTGGGTCGGC 59.323 50.000 0.00 0.00 38.11 5.54
3075 3111 1.182385 TTTGTCCATTTGGGTCGGCC 61.182 55.000 0.00 0.00 38.11 6.13
3076 3112 3.131478 GTCCATTTGGGTCGGCCG 61.131 66.667 22.12 22.12 38.11 6.13
3097 3133 4.368543 GCCCGTCGTCCGTCCTTT 62.369 66.667 0.00 0.00 33.66 3.11
3098 3134 2.341176 CCCGTCGTCCGTCCTTTT 59.659 61.111 0.00 0.00 33.66 2.27
3099 3135 1.301165 CCCGTCGTCCGTCCTTTTT 60.301 57.895 0.00 0.00 33.66 1.94
3117 3153 1.459450 TTTAGATTTGGGTCGGCAGC 58.541 50.000 0.00 0.00 0.00 5.25
3118 3154 0.742990 TTAGATTTGGGTCGGCAGCG 60.743 55.000 0.00 0.00 0.00 5.18
3119 3155 4.179579 GATTTGGGTCGGCAGCGC 62.180 66.667 0.00 0.00 0.00 5.92
3138 3174 4.752879 CCCAACGCGTCGACCCAT 62.753 66.667 14.44 0.00 0.00 4.00
3139 3175 2.740826 CCAACGCGTCGACCCATT 60.741 61.111 14.44 0.00 0.00 3.16
3140 3176 2.322081 CCAACGCGTCGACCCATTT 61.322 57.895 14.44 0.00 0.00 2.32
3141 3177 1.131826 CAACGCGTCGACCCATTTC 59.868 57.895 14.44 0.00 0.00 2.17
3142 3178 1.301087 AACGCGTCGACCCATTTCA 60.301 52.632 14.44 0.00 0.00 2.69
3143 3179 0.672401 AACGCGTCGACCCATTTCAT 60.672 50.000 14.44 0.00 0.00 2.57
3144 3180 0.173935 ACGCGTCGACCCATTTCATA 59.826 50.000 5.58 0.00 0.00 2.15
3145 3181 1.282817 CGCGTCGACCCATTTCATAA 58.717 50.000 10.58 0.00 0.00 1.90
3146 3182 1.005347 CGCGTCGACCCATTTCATAAC 60.005 52.381 10.58 0.00 0.00 1.89
3147 3183 1.329599 GCGTCGACCCATTTCATAACC 59.670 52.381 10.58 0.00 0.00 2.85
3148 3184 1.591158 CGTCGACCCATTTCATAACCG 59.409 52.381 10.58 0.00 0.00 4.44
3149 3185 1.329599 GTCGACCCATTTCATAACCGC 59.670 52.381 3.51 0.00 0.00 5.68
3150 3186 0.303493 CGACCCATTTCATAACCGCG 59.697 55.000 0.00 0.00 0.00 6.46
3151 3187 0.028902 GACCCATTTCATAACCGCGC 59.971 55.000 0.00 0.00 0.00 6.86
3152 3188 1.010125 CCCATTTCATAACCGCGCG 60.010 57.895 25.67 25.67 0.00 6.86
3153 3189 1.654137 CCATTTCATAACCGCGCGC 60.654 57.895 27.36 23.91 0.00 6.86
3154 3190 1.998257 CATTTCATAACCGCGCGCG 60.998 57.895 43.73 43.73 39.44 6.86
3155 3191 3.783588 ATTTCATAACCGCGCGCGC 62.784 57.895 45.06 42.65 38.24 6.86
3158 3194 4.514569 CATAACCGCGCGCGCTTT 62.515 61.111 45.97 38.20 39.32 3.51
3159 3195 2.886604 ATAACCGCGCGCGCTTTA 60.887 55.556 45.97 38.89 39.32 1.85
3160 3196 2.867091 ATAACCGCGCGCGCTTTAG 61.867 57.895 45.97 33.67 39.32 1.85
3161 3197 3.967833 TAACCGCGCGCGCTTTAGA 62.968 57.895 45.97 27.45 39.32 2.10
3163 3199 4.341240 CCGCGCGCGCTTTAGATC 62.341 66.667 45.97 20.49 39.32 2.75
3164 3200 3.616577 CGCGCGCGCTTTAGATCA 61.617 61.111 45.97 0.00 39.32 2.92
3165 3201 2.931386 GCGCGCGCTTTAGATCAT 59.069 55.556 44.38 0.00 38.26 2.45
3166 3202 1.437735 GCGCGCGCTTTAGATCATG 60.438 57.895 44.38 10.35 38.26 3.07
3167 3203 1.437735 CGCGCGCTTTAGATCATGC 60.438 57.895 30.48 0.00 0.00 4.06
3168 3204 1.082496 GCGCGCTTTAGATCATGCC 60.082 57.895 26.67 0.00 0.00 4.40
3169 3205 1.775039 GCGCGCTTTAGATCATGCCA 61.775 55.000 26.67 0.00 0.00 4.92
3170 3206 0.234106 CGCGCTTTAGATCATGCCAG 59.766 55.000 5.56 0.00 0.00 4.85
3171 3207 0.040603 GCGCTTTAGATCATGCCAGC 60.041 55.000 0.00 0.00 0.00 4.85
3172 3208 0.234106 CGCTTTAGATCATGCCAGCG 59.766 55.000 9.42 9.42 43.56 5.18
3173 3209 0.590195 GCTTTAGATCATGCCAGCGG 59.410 55.000 0.00 0.00 0.00 5.52
3174 3210 1.233019 CTTTAGATCATGCCAGCGGG 58.767 55.000 0.00 0.00 37.18 6.13
3175 3211 0.179020 TTTAGATCATGCCAGCGGGG 60.179 55.000 4.64 0.00 40.85 5.73
3176 3212 1.053835 TTAGATCATGCCAGCGGGGA 61.054 55.000 4.64 0.91 40.01 4.81
3177 3213 1.475169 TAGATCATGCCAGCGGGGAG 61.475 60.000 4.64 0.00 38.23 4.30
3178 3214 3.839353 GATCATGCCAGCGGGGAGG 62.839 68.421 1.98 1.98 38.23 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.748591 GCCATGAGCCTCCTTGTTAGG 60.749 57.143 0.00 0.00 38.08 2.69
485 486 3.279434 ACGGAAAATTACAGGCTGGATC 58.721 45.455 20.34 4.33 0.00 3.36
486 487 3.366052 ACGGAAAATTACAGGCTGGAT 57.634 42.857 20.34 9.59 0.00 3.41
504 505 2.014128 CCCATTGTAACCAGCCTTACG 58.986 52.381 0.00 0.00 30.33 3.18
506 507 1.356059 TGCCCATTGTAACCAGCCTTA 59.644 47.619 0.00 0.00 0.00 2.69
507 508 0.114168 TGCCCATTGTAACCAGCCTT 59.886 50.000 0.00 0.00 0.00 4.35
508 509 0.114168 TTGCCCATTGTAACCAGCCT 59.886 50.000 0.00 0.00 0.00 4.58
509 510 0.532115 CTTGCCCATTGTAACCAGCC 59.468 55.000 0.00 0.00 0.00 4.85
510 511 1.544724 TCTTGCCCATTGTAACCAGC 58.455 50.000 0.00 0.00 0.00 4.85
511 512 2.890311 TGTTCTTGCCCATTGTAACCAG 59.110 45.455 0.00 0.00 0.00 4.00
512 513 2.950781 TGTTCTTGCCCATTGTAACCA 58.049 42.857 0.00 0.00 0.00 3.67
513 514 5.650543 CTTATGTTCTTGCCCATTGTAACC 58.349 41.667 0.00 0.00 0.00 2.85
514 515 5.102313 GCTTATGTTCTTGCCCATTGTAAC 58.898 41.667 0.00 0.00 0.00 2.50
515 516 5.016173 AGCTTATGTTCTTGCCCATTGTAA 58.984 37.500 0.00 0.00 0.00 2.41
516 517 4.599041 AGCTTATGTTCTTGCCCATTGTA 58.401 39.130 0.00 0.00 0.00 2.41
517 518 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
518 519 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
519 520 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
520 521 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
521 522 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
522 523 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
523 524 6.986904 AAGTTACTAGCTTATGTTCTTGCC 57.013 37.500 0.00 0.00 0.00 4.52
550 551 9.804977 GAGGTATTAACATAGTCTAGGGAAGTA 57.195 37.037 0.00 0.00 0.00 2.24
551 552 8.512813 AGAGGTATTAACATAGTCTAGGGAAGT 58.487 37.037 0.00 0.00 0.00 3.01
552 553 8.943594 AGAGGTATTAACATAGTCTAGGGAAG 57.056 38.462 0.00 0.00 0.00 3.46
559 560 9.756571 CCCACTATAGAGGTATTAACATAGTCT 57.243 37.037 14.29 0.00 29.11 3.24
560 561 9.531158 ACCCACTATAGAGGTATTAACATAGTC 57.469 37.037 14.29 0.00 29.11 2.59
565 566 9.940974 TTTCTACCCACTATAGAGGTATTAACA 57.059 33.333 19.87 5.96 35.63 2.41
567 568 9.940974 TGTTTCTACCCACTATAGAGGTATTAA 57.059 33.333 19.87 15.78 35.63 1.40
569 570 9.448587 AATGTTTCTACCCACTATAGAGGTATT 57.551 33.333 19.87 12.27 35.63 1.89
570 571 9.448587 AAATGTTTCTACCCACTATAGAGGTAT 57.551 33.333 19.87 9.90 35.63 2.73
571 572 8.849543 AAATGTTTCTACCCACTATAGAGGTA 57.150 34.615 19.00 19.00 35.02 3.08
572 573 7.750947 AAATGTTTCTACCCACTATAGAGGT 57.249 36.000 18.83 18.83 37.69 3.85
573 574 9.712305 CATAAATGTTTCTACCCACTATAGAGG 57.288 37.037 6.78 8.10 30.46 3.69
578 579 9.832445 CACTACATAAATGTTTCTACCCACTAT 57.168 33.333 0.12 0.00 41.97 2.12
579 580 8.818860 ACACTACATAAATGTTTCTACCCACTA 58.181 33.333 0.12 0.00 41.97 2.74
580 581 7.686434 ACACTACATAAATGTTTCTACCCACT 58.314 34.615 0.12 0.00 41.97 4.00
581 582 7.604927 TGACACTACATAAATGTTTCTACCCAC 59.395 37.037 0.12 0.00 41.97 4.61
582 583 7.681679 TGACACTACATAAATGTTTCTACCCA 58.318 34.615 0.12 0.00 41.97 4.51
583 584 8.612619 CATGACACTACATAAATGTTTCTACCC 58.387 37.037 0.12 0.00 41.97 3.69
584 585 8.122952 GCATGACACTACATAAATGTTTCTACC 58.877 37.037 0.00 0.00 41.97 3.18
585 586 8.664798 TGCATGACACTACATAAATGTTTCTAC 58.335 33.333 0.00 0.00 41.97 2.59
586 587 8.785329 TGCATGACACTACATAAATGTTTCTA 57.215 30.769 0.00 0.00 41.97 2.10
587 588 7.686438 TGCATGACACTACATAAATGTTTCT 57.314 32.000 0.00 0.00 41.97 2.52
588 589 8.800972 CATTGCATGACACTACATAAATGTTTC 58.199 33.333 0.00 0.00 41.97 2.78
589 590 8.522003 TCATTGCATGACACTACATAAATGTTT 58.478 29.630 0.00 0.00 36.98 2.83
590 591 8.054152 TCATTGCATGACACTACATAAATGTT 57.946 30.769 0.00 0.00 36.98 2.71
591 592 7.628769 TCATTGCATGACACTACATAAATGT 57.371 32.000 0.00 0.63 38.37 2.71
592 593 8.132995 ACATCATTGCATGACACTACATAAATG 58.867 33.333 0.00 0.00 43.01 2.32
593 594 8.229253 ACATCATTGCATGACACTACATAAAT 57.771 30.769 0.00 0.00 43.01 1.40
594 595 7.628769 ACATCATTGCATGACACTACATAAA 57.371 32.000 0.00 0.00 43.01 1.40
595 596 8.907222 ATACATCATTGCATGACACTACATAA 57.093 30.769 0.00 0.00 43.01 1.90
596 597 8.907222 AATACATCATTGCATGACACTACATA 57.093 30.769 0.00 0.00 43.01 2.29
597 598 7.812690 AATACATCATTGCATGACACTACAT 57.187 32.000 0.00 0.00 43.01 2.29
598 599 7.628769 AAATACATCATTGCATGACACTACA 57.371 32.000 0.00 0.00 43.01 2.74
602 603 9.616634 CCTAATAAATACATCATTGCATGACAC 57.383 33.333 0.00 0.00 43.01 3.67
603 604 9.353431 ACCTAATAAATACATCATTGCATGACA 57.647 29.630 0.00 0.00 43.01 3.58
636 637 9.290988 TGTGGTAATTAGCTAAGAAACAATGAA 57.709 29.630 12.54 0.00 0.00 2.57
637 638 8.856153 TGTGGTAATTAGCTAAGAAACAATGA 57.144 30.769 12.54 0.00 0.00 2.57
638 639 9.559958 CTTGTGGTAATTAGCTAAGAAACAATG 57.440 33.333 12.54 8.13 0.00 2.82
639 640 8.244113 GCTTGTGGTAATTAGCTAAGAAACAAT 58.756 33.333 23.86 0.00 0.00 2.71
640 641 7.229707 TGCTTGTGGTAATTAGCTAAGAAACAA 59.770 33.333 23.86 18.52 34.77 2.83
641 642 6.712998 TGCTTGTGGTAATTAGCTAAGAAACA 59.287 34.615 23.86 8.28 34.77 2.83
642 643 7.021790 GTGCTTGTGGTAATTAGCTAAGAAAC 58.978 38.462 23.86 18.88 34.77 2.78
643 644 6.150474 GGTGCTTGTGGTAATTAGCTAAGAAA 59.850 38.462 23.86 14.39 34.77 2.52
644 645 5.646360 GGTGCTTGTGGTAATTAGCTAAGAA 59.354 40.000 23.86 16.62 34.77 2.52
645 646 5.045869 AGGTGCTTGTGGTAATTAGCTAAGA 60.046 40.000 23.86 0.00 34.77 2.10
646 647 5.186198 AGGTGCTTGTGGTAATTAGCTAAG 58.814 41.667 12.54 17.61 34.77 2.18
647 648 5.045869 AGAGGTGCTTGTGGTAATTAGCTAA 60.046 40.000 8.99 8.99 34.77 3.09
648 649 4.469945 AGAGGTGCTTGTGGTAATTAGCTA 59.530 41.667 15.27 0.00 34.77 3.32
649 650 3.264450 AGAGGTGCTTGTGGTAATTAGCT 59.736 43.478 15.27 0.00 34.77 3.32
650 651 3.610911 AGAGGTGCTTGTGGTAATTAGC 58.389 45.455 7.74 7.74 0.00 3.09
651 652 5.091261 AGAGAGGTGCTTGTGGTAATTAG 57.909 43.478 0.00 0.00 0.00 1.73
652 653 4.777896 AGAGAGAGGTGCTTGTGGTAATTA 59.222 41.667 0.00 0.00 0.00 1.40
653 654 3.584848 AGAGAGAGGTGCTTGTGGTAATT 59.415 43.478 0.00 0.00 0.00 1.40
654 655 3.177228 AGAGAGAGGTGCTTGTGGTAAT 58.823 45.455 0.00 0.00 0.00 1.89
655 656 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
656 657 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
657 658 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
658 659 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
659 660 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
660 661 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
661 662 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
662 663 8.270744 ACATATTTAATGAAGAGAGAGGTGCTT 58.729 33.333 0.00 0.00 0.00 3.91
663 664 7.714377 CACATATTTAATGAAGAGAGAGGTGCT 59.286 37.037 0.00 0.00 0.00 4.40
664 665 7.497249 ACACATATTTAATGAAGAGAGAGGTGC 59.503 37.037 0.00 0.00 0.00 5.01
665 666 8.954950 ACACATATTTAATGAAGAGAGAGGTG 57.045 34.615 0.00 0.00 0.00 4.00
666 667 8.762645 TGACACATATTTAATGAAGAGAGAGGT 58.237 33.333 0.00 0.00 0.00 3.85
667 668 9.039870 GTGACACATATTTAATGAAGAGAGAGG 57.960 37.037 0.00 0.00 0.00 3.69
668 669 9.591792 TGTGACACATATTTAATGAAGAGAGAG 57.408 33.333 3.56 0.00 0.00 3.20
680 681 9.838975 CAACTTTGCTTATGTGACACATATTTA 57.161 29.630 25.12 12.38 40.41 1.40
681 682 8.359642 ACAACTTTGCTTATGTGACACATATTT 58.640 29.630 25.12 6.87 40.41 1.40
682 683 7.885297 ACAACTTTGCTTATGTGACACATATT 58.115 30.769 25.12 13.81 40.41 1.28
683 684 7.452880 ACAACTTTGCTTATGTGACACATAT 57.547 32.000 25.12 7.93 40.41 1.78
684 685 6.875948 ACAACTTTGCTTATGTGACACATA 57.124 33.333 21.76 21.76 39.88 2.29
685 686 5.772825 ACAACTTTGCTTATGTGACACAT 57.227 34.783 23.83 23.83 42.35 3.21
686 687 6.875948 ATACAACTTTGCTTATGTGACACA 57.124 33.333 11.41 11.41 0.00 3.72
687 688 6.582295 CCAATACAACTTTGCTTATGTGACAC 59.418 38.462 0.00 0.00 0.00 3.67
688 689 6.488344 TCCAATACAACTTTGCTTATGTGACA 59.512 34.615 0.00 0.00 0.00 3.58
689 690 6.908825 TCCAATACAACTTTGCTTATGTGAC 58.091 36.000 0.00 0.00 0.00 3.67
690 691 6.714810 ACTCCAATACAACTTTGCTTATGTGA 59.285 34.615 0.00 0.00 0.00 3.58
691 692 6.803320 CACTCCAATACAACTTTGCTTATGTG 59.197 38.462 0.00 0.00 0.00 3.21
692 693 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
693 694 6.803320 CACACTCCAATACAACTTTGCTTATG 59.197 38.462 0.00 0.00 0.00 1.90
694 695 6.490040 ACACACTCCAATACAACTTTGCTTAT 59.510 34.615 0.00 0.00 0.00 1.73
695 696 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
696 697 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
697 698 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
698 699 4.202010 ACACACACTCCAATACAACTTTGC 60.202 41.667 0.00 0.00 0.00 3.68
699 700 5.065859 TCACACACACTCCAATACAACTTTG 59.934 40.000 0.00 0.00 0.00 2.77
700 701 5.189928 TCACACACACTCCAATACAACTTT 58.810 37.500 0.00 0.00 0.00 2.66
701 702 4.776349 TCACACACACTCCAATACAACTT 58.224 39.130 0.00 0.00 0.00 2.66
702 703 4.415881 TCACACACACTCCAATACAACT 57.584 40.909 0.00 0.00 0.00 3.16
703 704 4.515191 ACATCACACACACTCCAATACAAC 59.485 41.667 0.00 0.00 0.00 3.32
704 705 4.713553 ACATCACACACACTCCAATACAA 58.286 39.130 0.00 0.00 0.00 2.41
705 706 4.350368 ACATCACACACACTCCAATACA 57.650 40.909 0.00 0.00 0.00 2.29
706 707 6.985188 ATAACATCACACACACTCCAATAC 57.015 37.500 0.00 0.00 0.00 1.89
707 708 6.597672 GGAATAACATCACACACACTCCAATA 59.402 38.462 0.00 0.00 0.00 1.90
708 709 5.415701 GGAATAACATCACACACACTCCAAT 59.584 40.000 0.00 0.00 0.00 3.16
709 710 4.759693 GGAATAACATCACACACACTCCAA 59.240 41.667 0.00 0.00 0.00 3.53
710 711 4.041567 AGGAATAACATCACACACACTCCA 59.958 41.667 0.00 0.00 0.00 3.86
711 712 4.579869 AGGAATAACATCACACACACTCC 58.420 43.478 0.00 0.00 0.00 3.85
712 713 6.874134 ACTTAGGAATAACATCACACACACTC 59.126 38.462 0.00 0.00 0.00 3.51
713 714 6.769512 ACTTAGGAATAACATCACACACACT 58.230 36.000 0.00 0.00 0.00 3.55
714 715 7.435068 AACTTAGGAATAACATCACACACAC 57.565 36.000 0.00 0.00 0.00 3.82
715 716 7.936847 AGAAACTTAGGAATAACATCACACACA 59.063 33.333 0.00 0.00 0.00 3.72
716 717 8.324163 AGAAACTTAGGAATAACATCACACAC 57.676 34.615 0.00 0.00 0.00 3.82
717 718 7.606456 GGAGAAACTTAGGAATAACATCACACA 59.394 37.037 0.00 0.00 0.00 3.72
718 719 7.065923 GGGAGAAACTTAGGAATAACATCACAC 59.934 40.741 0.00 0.00 0.00 3.82
719 720 7.110155 GGGAGAAACTTAGGAATAACATCACA 58.890 38.462 0.00 0.00 0.00 3.58
720 721 6.542735 GGGGAGAAACTTAGGAATAACATCAC 59.457 42.308 0.00 0.00 0.00 3.06
721 722 6.216662 TGGGGAGAAACTTAGGAATAACATCA 59.783 38.462 0.00 0.00 0.00 3.07
722 723 6.659824 TGGGGAGAAACTTAGGAATAACATC 58.340 40.000 0.00 0.00 0.00 3.06
723 724 6.652205 TGGGGAGAAACTTAGGAATAACAT 57.348 37.500 0.00 0.00 0.00 2.71
724 725 6.652205 ATGGGGAGAAACTTAGGAATAACA 57.348 37.500 0.00 0.00 0.00 2.41
725 726 6.890268 ACAATGGGGAGAAACTTAGGAATAAC 59.110 38.462 0.00 0.00 0.00 1.89
726 727 7.039722 ACAATGGGGAGAAACTTAGGAATAA 57.960 36.000 0.00 0.00 0.00 1.40
727 728 6.652205 ACAATGGGGAGAAACTTAGGAATA 57.348 37.500 0.00 0.00 0.00 1.75
728 729 5.536497 ACAATGGGGAGAAACTTAGGAAT 57.464 39.130 0.00 0.00 0.00 3.01
729 730 5.333566 AACAATGGGGAGAAACTTAGGAA 57.666 39.130 0.00 0.00 0.00 3.36
730 731 5.280830 GGTAACAATGGGGAGAAACTTAGGA 60.281 44.000 0.00 0.00 0.00 2.94
731 732 4.948004 GGTAACAATGGGGAGAAACTTAGG 59.052 45.833 0.00 0.00 0.00 2.69
732 733 4.948004 GGGTAACAATGGGGAGAAACTTAG 59.052 45.833 0.00 0.00 39.74 2.18
733 734 4.566070 CGGGTAACAATGGGGAGAAACTTA 60.566 45.833 0.00 0.00 39.74 2.24
734 735 3.774734 GGGTAACAATGGGGAGAAACTT 58.225 45.455 0.00 0.00 39.74 2.66
735 736 2.290705 CGGGTAACAATGGGGAGAAACT 60.291 50.000 0.00 0.00 39.74 2.66
736 737 2.089201 CGGGTAACAATGGGGAGAAAC 58.911 52.381 0.00 0.00 39.74 2.78
737 738 1.614850 GCGGGTAACAATGGGGAGAAA 60.615 52.381 0.00 0.00 39.74 2.52
738 739 0.034863 GCGGGTAACAATGGGGAGAA 60.035 55.000 0.00 0.00 39.74 2.87
739 740 1.605453 GCGGGTAACAATGGGGAGA 59.395 57.895 0.00 0.00 39.74 3.71
740 741 1.453197 GGCGGGTAACAATGGGGAG 60.453 63.158 0.00 0.00 39.74 4.30
741 742 0.620990 TAGGCGGGTAACAATGGGGA 60.621 55.000 0.00 0.00 39.74 4.81
742 743 0.256464 TTAGGCGGGTAACAATGGGG 59.744 55.000 0.00 0.00 39.74 4.96
743 744 1.064979 ACTTAGGCGGGTAACAATGGG 60.065 52.381 0.00 0.00 39.74 4.00
744 745 2.014128 CACTTAGGCGGGTAACAATGG 58.986 52.381 0.00 0.00 39.74 3.16
745 746 2.706890 ACACTTAGGCGGGTAACAATG 58.293 47.619 0.00 0.00 39.74 2.82
746 747 3.770933 TCTACACTTAGGCGGGTAACAAT 59.229 43.478 0.00 0.00 39.74 2.71
747 748 3.164268 TCTACACTTAGGCGGGTAACAA 58.836 45.455 0.00 0.00 39.74 2.83
748 749 2.806434 TCTACACTTAGGCGGGTAACA 58.194 47.619 0.00 0.00 39.74 2.41
749 750 3.874392 TTCTACACTTAGGCGGGTAAC 57.126 47.619 0.00 0.00 0.00 2.50
750 751 6.736110 ATAATTCTACACTTAGGCGGGTAA 57.264 37.500 0.00 0.00 0.00 2.85
751 752 6.463331 CCAATAATTCTACACTTAGGCGGGTA 60.463 42.308 0.00 0.00 0.00 3.69
752 753 5.365619 CAATAATTCTACACTTAGGCGGGT 58.634 41.667 0.00 0.00 0.00 5.28
753 754 4.755123 CCAATAATTCTACACTTAGGCGGG 59.245 45.833 0.00 0.00 0.00 6.13
754 755 5.465724 GTCCAATAATTCTACACTTAGGCGG 59.534 44.000 0.00 0.00 0.00 6.13
755 756 6.046593 TGTCCAATAATTCTACACTTAGGCG 58.953 40.000 0.00 0.00 0.00 5.52
756 757 7.859325 TTGTCCAATAATTCTACACTTAGGC 57.141 36.000 0.00 0.00 0.00 3.93
799 800 0.036732 TCTCATTCACCACCTGGCAC 59.963 55.000 0.00 0.00 39.32 5.01
800 801 0.036732 GTCTCATTCACCACCTGGCA 59.963 55.000 0.00 0.00 39.32 4.92
819 820 8.395633 CCTACCCAAAAATAAAGTAATCGAGTG 58.604 37.037 0.00 0.00 0.00 3.51
840 841 3.059352 AGTGTCAAGTTGATGCCTACC 57.941 47.619 9.18 0.00 0.00 3.18
932 933 9.661563 TTTACTTGTATGAGTTCGGTTCATATT 57.338 29.630 7.39 0.00 39.12 1.28
1036 1047 2.924101 AGGTTCGGCGGGGTACAA 60.924 61.111 7.21 0.00 0.00 2.41
1809 1820 3.129502 TAGTAGCCGTCGTGCGCT 61.130 61.111 9.73 0.25 39.71 5.92
2370 2405 6.930164 TGTACAGGAACTAAACGAATTTGCTA 59.070 34.615 0.00 0.00 36.02 3.49
2451 2486 5.357742 TGTGCATCCAATGACATAGTACT 57.642 39.130 0.00 0.00 0.00 2.73
2469 2504 6.643770 ACATCAGAAAGTTCATTGAAATGTGC 59.356 34.615 0.00 0.00 37.65 4.57
2585 2620 7.001099 TCGTTTGTTCTACTCCCTCTATTTT 57.999 36.000 0.00 0.00 0.00 1.82
2610 2645 8.201464 TGCTTTCCGTATCTATCAAACTAATCA 58.799 33.333 0.00 0.00 0.00 2.57
2613 2648 7.820386 TGTTGCTTTCCGTATCTATCAAACTAA 59.180 33.333 0.00 0.00 0.00 2.24
2650 2686 3.517500 ACCACTCCTCTTCAAGAATCTCC 59.482 47.826 0.00 0.00 0.00 3.71
2802 2838 7.863877 ACGTTGGTTAAATTTATGGTCAAACTC 59.136 33.333 0.00 0.00 0.00 3.01
2823 2859 2.253758 CCAGCAGTGTCCCACGTTG 61.254 63.158 0.00 0.00 39.64 4.10
2827 2863 3.560636 ATTATACCAGCAGTGTCCCAC 57.439 47.619 0.00 0.00 34.10 4.61
2869 2905 8.643752 GTTTGATCATAAATTTAACCAACGTGG 58.356 33.333 1.21 0.00 45.02 4.94
2931 2967 3.983044 AAACATGTACTCCCTCCACTC 57.017 47.619 0.00 0.00 0.00 3.51
3029 3065 3.189010 AAAAGCGCCGTCCGTTTGG 62.189 57.895 2.29 0.00 39.53 3.28
3030 3066 2.008697 CAAAAGCGCCGTCCGTTTG 61.009 57.895 2.29 1.85 39.53 2.93
3031 3067 2.330041 CAAAAGCGCCGTCCGTTT 59.670 55.556 2.29 0.00 42.34 3.60
3032 3068 2.888998 GACAAAAGCGCCGTCCGTT 61.889 57.895 2.29 0.00 39.71 4.44
3033 3069 3.343421 GACAAAAGCGCCGTCCGT 61.343 61.111 2.29 0.00 39.71 4.69
3034 3070 4.084888 GGACAAAAGCGCCGTCCG 62.085 66.667 16.93 0.65 39.86 4.79
3035 3071 4.084888 CGGACAAAAGCGCCGTCC 62.085 66.667 20.22 20.22 44.79 4.79
3036 3072 4.736631 GCGGACAAAAGCGCCGTC 62.737 66.667 2.29 6.02 46.38 4.79
3039 3075 0.874175 AAAAAGCGGACAAAAGCGCC 60.874 50.000 2.29 0.00 38.61 6.53
3040 3076 0.229500 CAAAAAGCGGACAAAAGCGC 59.771 50.000 0.00 0.00 38.61 5.92
3041 3077 1.516864 GACAAAAAGCGGACAAAAGCG 59.483 47.619 0.00 0.00 38.61 4.68
3042 3078 1.858458 GGACAAAAAGCGGACAAAAGC 59.142 47.619 0.00 0.00 0.00 3.51
3043 3079 3.157932 TGGACAAAAAGCGGACAAAAG 57.842 42.857 0.00 0.00 0.00 2.27
3044 3080 3.810310 ATGGACAAAAAGCGGACAAAA 57.190 38.095 0.00 0.00 0.00 2.44
3045 3081 3.810310 AATGGACAAAAAGCGGACAAA 57.190 38.095 0.00 0.00 0.00 2.83
3046 3082 3.452474 CAAATGGACAAAAAGCGGACAA 58.548 40.909 0.00 0.00 0.00 3.18
3047 3083 2.223923 CCAAATGGACAAAAAGCGGACA 60.224 45.455 0.00 0.00 37.39 4.02
3048 3084 2.403259 CCAAATGGACAAAAAGCGGAC 58.597 47.619 0.00 0.00 37.39 4.79
3049 3085 1.342819 CCCAAATGGACAAAAAGCGGA 59.657 47.619 0.00 0.00 37.39 5.54
3050 3086 1.069978 ACCCAAATGGACAAAAAGCGG 59.930 47.619 0.00 0.00 37.39 5.52
3051 3087 2.403259 GACCCAAATGGACAAAAAGCG 58.597 47.619 0.00 0.00 37.39 4.68
3052 3088 2.403259 CGACCCAAATGGACAAAAAGC 58.597 47.619 0.00 0.00 37.39 3.51
3053 3089 2.866065 GCCGACCCAAATGGACAAAAAG 60.866 50.000 0.00 0.00 37.39 2.27
3054 3090 1.069358 GCCGACCCAAATGGACAAAAA 59.931 47.619 0.00 0.00 37.39 1.94
3055 3091 0.676736 GCCGACCCAAATGGACAAAA 59.323 50.000 0.00 0.00 37.39 2.44
3056 3092 1.182385 GGCCGACCCAAATGGACAAA 61.182 55.000 0.00 0.00 37.39 2.83
3057 3093 1.605165 GGCCGACCCAAATGGACAA 60.605 57.895 0.00 0.00 37.39 3.18
3058 3094 2.034999 GGCCGACCCAAATGGACA 59.965 61.111 0.00 0.00 37.39 4.02
3059 3095 3.131478 CGGCCGACCCAAATGGAC 61.131 66.667 24.07 0.00 37.39 4.02
3096 3132 2.230266 GCTGCCGACCCAAATCTAAAAA 59.770 45.455 0.00 0.00 0.00 1.94
3097 3133 1.816224 GCTGCCGACCCAAATCTAAAA 59.184 47.619 0.00 0.00 0.00 1.52
3098 3134 1.459450 GCTGCCGACCCAAATCTAAA 58.541 50.000 0.00 0.00 0.00 1.85
3099 3135 0.742990 CGCTGCCGACCCAAATCTAA 60.743 55.000 0.00 0.00 36.29 2.10
3100 3136 1.153449 CGCTGCCGACCCAAATCTA 60.153 57.895 0.00 0.00 36.29 1.98
3101 3137 2.436646 CGCTGCCGACCCAAATCT 60.437 61.111 0.00 0.00 36.29 2.40
3102 3138 4.179579 GCGCTGCCGACCCAAATC 62.180 66.667 0.00 0.00 36.29 2.17
3121 3157 4.752879 ATGGGTCGACGCGTTGGG 62.753 66.667 25.66 12.67 0.00 4.12
3122 3158 2.235536 GAAATGGGTCGACGCGTTGG 62.236 60.000 32.67 15.24 37.94 3.77
3123 3159 1.131826 GAAATGGGTCGACGCGTTG 59.868 57.895 32.67 20.76 37.94 4.10
3124 3160 0.672401 ATGAAATGGGTCGACGCGTT 60.672 50.000 28.47 28.47 39.31 4.84
3125 3161 0.173935 TATGAAATGGGTCGACGCGT 59.826 50.000 25.18 22.95 0.00 6.01
3126 3162 1.005347 GTTATGAAATGGGTCGACGCG 60.005 52.381 25.18 3.53 0.00 6.01
3127 3163 1.329599 GGTTATGAAATGGGTCGACGC 59.670 52.381 24.41 24.41 0.00 5.19
3128 3164 1.591158 CGGTTATGAAATGGGTCGACG 59.409 52.381 9.92 0.00 0.00 5.12
3129 3165 1.329599 GCGGTTATGAAATGGGTCGAC 59.670 52.381 7.13 7.13 0.00 4.20
3130 3166 1.658994 GCGGTTATGAAATGGGTCGA 58.341 50.000 0.00 0.00 0.00 4.20
3131 3167 0.303493 CGCGGTTATGAAATGGGTCG 59.697 55.000 0.00 0.00 0.00 4.79
3132 3168 0.028902 GCGCGGTTATGAAATGGGTC 59.971 55.000 8.83 0.00 0.00 4.46
3133 3169 1.711060 CGCGCGGTTATGAAATGGGT 61.711 55.000 24.84 0.00 0.00 4.51
3134 3170 1.010125 CGCGCGGTTATGAAATGGG 60.010 57.895 24.84 0.00 0.00 4.00
3135 3171 1.654137 GCGCGCGGTTATGAAATGG 60.654 57.895 33.06 0.00 0.00 3.16
3136 3172 1.998257 CGCGCGCGGTTATGAAATG 60.998 57.895 43.28 12.95 35.56 2.32
3137 3173 2.323105 CGCGCGCGGTTATGAAAT 59.677 55.556 43.28 0.00 35.56 2.17
3148 3184 1.437735 CATGATCTAAAGCGCGCGC 60.438 57.895 45.10 45.10 42.33 6.86
3149 3185 1.437735 GCATGATCTAAAGCGCGCG 60.438 57.895 28.44 28.44 0.00 6.86
3150 3186 1.082496 GGCATGATCTAAAGCGCGC 60.082 57.895 26.66 26.66 0.00 6.86
3151 3187 0.234106 CTGGCATGATCTAAAGCGCG 59.766 55.000 0.00 0.00 0.00 6.86
3152 3188 0.040603 GCTGGCATGATCTAAAGCGC 60.041 55.000 0.00 0.00 0.00 5.92
3153 3189 0.234106 CGCTGGCATGATCTAAAGCG 59.766 55.000 0.00 12.06 46.09 4.68
3154 3190 0.590195 CCGCTGGCATGATCTAAAGC 59.410 55.000 0.00 0.00 0.00 3.51
3155 3191 1.233019 CCCGCTGGCATGATCTAAAG 58.767 55.000 0.00 0.00 0.00 1.85
3156 3192 0.179020 CCCCGCTGGCATGATCTAAA 60.179 55.000 0.00 0.00 0.00 1.85
3157 3193 1.053835 TCCCCGCTGGCATGATCTAA 61.054 55.000 0.00 0.00 0.00 2.10
3158 3194 1.459348 TCCCCGCTGGCATGATCTA 60.459 57.895 0.00 0.00 0.00 1.98
3159 3195 2.769621 TCCCCGCTGGCATGATCT 60.770 61.111 0.00 0.00 0.00 2.75
3160 3196 2.281345 CTCCCCGCTGGCATGATC 60.281 66.667 0.00 0.00 0.00 2.92
3161 3197 3.882326 CCTCCCCGCTGGCATGAT 61.882 66.667 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.