Multiple sequence alignment - TraesCS7B01G038400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G038400 chr7B 100.000 3446 0 0 1 3446 37418979 37422424 0.000000e+00 6364.0
1 TraesCS7B01G038400 chr7B 93.760 1266 68 5 1015 2269 67352877 67354142 0.000000e+00 1890.0
2 TraesCS7B01G038400 chr7B 93.661 1262 74 2 1014 2269 37599860 37601121 0.000000e+00 1882.0
3 TraesCS7B01G038400 chr7B 91.492 858 45 16 2593 3446 67104583 67105416 0.000000e+00 1155.0
4 TraesCS7B01G038400 chr7B 91.259 858 47 16 2593 3446 37605464 37606297 0.000000e+00 1144.0
5 TraesCS7B01G038400 chr7B 75.714 560 103 17 1046 1584 666554834 666554287 2.050000e-62 250.0
6 TraesCS7B01G038400 chr7B 80.936 299 40 11 2681 2978 38784492 38784210 1.610000e-53 220.0
7 TraesCS7B01G038400 chr7B 78.694 291 51 7 2686 2974 39617577 39617858 2.110000e-42 183.0
8 TraesCS7B01G038400 chr7B 79.503 161 30 3 2685 2844 38595056 38595214 1.010000e-20 111.0
9 TraesCS7B01G038400 chr7B 97.727 44 1 0 692 735 436644220 436644177 3.690000e-10 76.8
10 TraesCS7B01G038400 chr7D 94.330 1305 68 2 972 2270 88143740 88142436 0.000000e+00 1995.0
11 TraesCS7B01G038400 chr7D 86.351 1121 86 34 2338 3423 88135102 88134014 0.000000e+00 1160.0
12 TraesCS7B01G038400 chr7D 87.779 851 67 17 2593 3430 88178729 88179555 0.000000e+00 961.0
13 TraesCS7B01G038400 chr7D 86.850 692 81 6 4 693 481619890 481619207 0.000000e+00 765.0
14 TraesCS7B01G038400 chr7D 73.899 908 178 41 1110 1971 591205089 591204195 3.340000e-80 309.0
15 TraesCS7B01G038400 chr7D 79.239 289 53 4 2686 2974 88899777 88899496 9.760000e-46 195.0
16 TraesCS7B01G038400 chr7D 83.422 187 30 1 731 916 70817600 70817786 4.570000e-39 172.0
17 TraesCS7B01G038400 chr7D 84.568 162 23 2 2687 2848 413240803 413240962 3.560000e-35 159.0
18 TraesCS7B01G038400 chr7D 100.000 44 0 0 692 735 603160025 603159982 7.930000e-12 82.4
19 TraesCS7B01G038400 chr7D 95.455 44 2 0 692 735 70817589 70817546 1.720000e-08 71.3
20 TraesCS7B01G038400 chr7A 94.782 824 38 3 1453 2271 89809868 89809045 0.000000e+00 1279.0
21 TraesCS7B01G038400 chr7A 85.808 761 69 16 2647 3398 89782063 89781333 0.000000e+00 771.0
22 TraesCS7B01G038400 chr7A 89.732 448 41 2 1014 1456 89827290 89826843 4.990000e-158 568.0
23 TraesCS7B01G038400 chr7A 81.271 299 39 13 2681 2978 89975803 89975521 3.460000e-55 226.0
24 TraesCS7B01G038400 chr7A 78.231 294 55 6 2686 2978 90337123 90336838 2.730000e-41 180.0
25 TraesCS7B01G038400 chr2D 86.944 697 79 9 6 693 455935417 455934724 0.000000e+00 773.0
26 TraesCS7B01G038400 chr2D 74.170 542 102 26 1734 2241 30335028 30335565 1.260000e-44 191.0
27 TraesCS7B01G038400 chr2D 87.059 170 19 3 1419 1587 26537431 26537264 4.540000e-44 189.0
28 TraesCS7B01G038400 chr2D 81.224 245 27 10 731 964 147116191 147116427 2.730000e-41 180.0
29 TraesCS7B01G038400 chr3D 86.831 691 82 5 5 693 8939052 8938369 0.000000e+00 763.0
30 TraesCS7B01G038400 chr3D 80.861 209 34 5 731 934 501266004 501266211 3.560000e-35 159.0
31 TraesCS7B01G038400 chr3D 100.000 43 0 0 693 735 39186456 39186414 2.850000e-11 80.5
32 TraesCS7B01G038400 chr3D 97.727 44 1 0 692 735 296159502 296159459 3.690000e-10 76.8
33 TraesCS7B01G038400 chr3D 97.727 44 1 0 692 735 335198195 335198152 3.690000e-10 76.8
34 TraesCS7B01G038400 chr6B 85.736 673 86 6 5 675 155205108 155204444 0.000000e+00 702.0
35 TraesCS7B01G038400 chr6B 84.249 692 102 7 5 693 693250428 693251115 0.000000e+00 667.0
36 TraesCS7B01G038400 chr5B 85.137 693 96 7 5 693 628611274 628611963 0.000000e+00 702.0
37 TraesCS7B01G038400 chr6A 84.393 692 103 5 5 693 197041898 197042587 0.000000e+00 675.0
38 TraesCS7B01G038400 chr2A 84.271 693 95 11 5 693 759687749 759688431 0.000000e+00 664.0
39 TraesCS7B01G038400 chr2A 97.727 44 1 0 692 735 163667253 163667296 3.690000e-10 76.8
40 TraesCS7B01G038400 chr3B 84.012 663 102 4 29 689 546199458 546198798 4.850000e-178 634.0
41 TraesCS7B01G038400 chrUn 86.517 178 22 2 1419 1595 17151974 17151798 9.760000e-46 195.0
42 TraesCS7B01G038400 chrUn 86.517 178 22 2 1419 1595 292609956 292610132 9.760000e-46 195.0
43 TraesCS7B01G038400 chrUn 80.488 246 32 10 731 964 342012323 342012564 1.270000e-39 174.0
44 TraesCS7B01G038400 chr3A 83.415 205 31 3 731 934 575889914 575889712 1.630000e-43 187.0
45 TraesCS7B01G038400 chr3A 97.727 44 1 0 692 735 474066975 474067018 3.690000e-10 76.8
46 TraesCS7B01G038400 chr4D 82.927 205 28 4 731 934 439741146 439740948 9.830000e-41 178.0
47 TraesCS7B01G038400 chr5D 82.439 205 33 3 731 933 457268281 457268484 3.530000e-40 176.0
48 TraesCS7B01G038400 chr5D 85.507 69 7 2 692 758 487456072 487456139 6.170000e-08 69.4
49 TraesCS7B01G038400 chr1D 80.851 235 29 12 731 955 79830021 79829793 1.640000e-38 171.0
50 TraesCS7B01G038400 chr6D 79.832 238 36 6 731 957 413031636 413031400 2.750000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G038400 chr7B 37418979 37422424 3445 False 6364 6364 100.000 1 3446 1 chr7B.!!$F1 3445
1 TraesCS7B01G038400 chr7B 67352877 67354142 1265 False 1890 1890 93.760 1015 2269 1 chr7B.!!$F7 1254
2 TraesCS7B01G038400 chr7B 37599860 37601121 1261 False 1882 1882 93.661 1014 2269 1 chr7B.!!$F2 1255
3 TraesCS7B01G038400 chr7B 67104583 67105416 833 False 1155 1155 91.492 2593 3446 1 chr7B.!!$F6 853
4 TraesCS7B01G038400 chr7B 37605464 37606297 833 False 1144 1144 91.259 2593 3446 1 chr7B.!!$F3 853
5 TraesCS7B01G038400 chr7B 666554287 666554834 547 True 250 250 75.714 1046 1584 1 chr7B.!!$R3 538
6 TraesCS7B01G038400 chr7D 88142436 88143740 1304 True 1995 1995 94.330 972 2270 1 chr7D.!!$R3 1298
7 TraesCS7B01G038400 chr7D 88134014 88135102 1088 True 1160 1160 86.351 2338 3423 1 chr7D.!!$R2 1085
8 TraesCS7B01G038400 chr7D 88178729 88179555 826 False 961 961 87.779 2593 3430 1 chr7D.!!$F2 837
9 TraesCS7B01G038400 chr7D 481619207 481619890 683 True 765 765 86.850 4 693 1 chr7D.!!$R5 689
10 TraesCS7B01G038400 chr7D 591204195 591205089 894 True 309 309 73.899 1110 1971 1 chr7D.!!$R6 861
11 TraesCS7B01G038400 chr7A 89809045 89809868 823 True 1279 1279 94.782 1453 2271 1 chr7A.!!$R2 818
12 TraesCS7B01G038400 chr7A 89781333 89782063 730 True 771 771 85.808 2647 3398 1 chr7A.!!$R1 751
13 TraesCS7B01G038400 chr2D 455934724 455935417 693 True 773 773 86.944 6 693 1 chr2D.!!$R2 687
14 TraesCS7B01G038400 chr3D 8938369 8939052 683 True 763 763 86.831 5 693 1 chr3D.!!$R1 688
15 TraesCS7B01G038400 chr6B 155204444 155205108 664 True 702 702 85.736 5 675 1 chr6B.!!$R1 670
16 TraesCS7B01G038400 chr6B 693250428 693251115 687 False 667 667 84.249 5 693 1 chr6B.!!$F1 688
17 TraesCS7B01G038400 chr5B 628611274 628611963 689 False 702 702 85.137 5 693 1 chr5B.!!$F1 688
18 TraesCS7B01G038400 chr6A 197041898 197042587 689 False 675 675 84.393 5 693 1 chr6A.!!$F1 688
19 TraesCS7B01G038400 chr2A 759687749 759688431 682 False 664 664 84.271 5 693 1 chr2A.!!$F2 688
20 TraesCS7B01G038400 chr3B 546198798 546199458 660 True 634 634 84.012 29 689 1 chr3B.!!$R1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 915 0.093026 GAAGCGGACGTTCATGTTCG 59.907 55.0 0.0 9.77 43.78 3.95 F
2300 2385 0.034059 ACCAGCACTTTCGTCTCAGG 59.966 55.0 0.0 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2309 2394 0.025001 CGCGCACGGTAGAAAATCTG 59.975 55.000 8.75 0.0 34.97 2.90 R
3202 3371 1.537202 CAAAGAAGGTGAAAGCCGAGG 59.463 52.381 0.00 0.0 32.25 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.807538 GGCAGCGCATCAGTGTGG 61.808 66.667 11.47 0.00 36.36 4.17
109 110 2.649034 CGTACGACTGGCACCTGT 59.351 61.111 10.44 0.00 0.00 4.00
132 134 2.680352 GAGAGGACCCAGTGCCGA 60.680 66.667 0.00 0.00 0.00 5.54
133 135 2.039624 AGAGGACCCAGTGCCGAT 59.960 61.111 0.00 0.00 0.00 4.18
227 230 2.786495 CGACCCTGCCTACGCATCT 61.786 63.158 0.00 0.00 46.11 2.90
235 238 1.730487 CCTACGCATCTGACTCGCT 59.270 57.895 1.08 0.00 0.00 4.93
240 243 1.737196 CGCATCTGACTCGCTCAACG 61.737 60.000 0.00 0.00 45.62 4.10
525 530 2.281208 CGCCGTCCCCTGTCAAAA 60.281 61.111 0.00 0.00 0.00 2.44
618 642 4.418328 CGCCGGTTTGGATGGGGA 62.418 66.667 1.90 0.00 42.00 4.81
700 724 3.820590 CCGCCACGGCATTAATGA 58.179 55.556 19.73 0.00 41.17 2.57
701 725 2.102554 CCGCCACGGCATTAATGAA 58.897 52.632 19.73 0.00 41.17 2.57
702 726 0.453793 CCGCCACGGCATTAATGAAA 59.546 50.000 19.73 0.00 41.17 2.69
703 727 1.135257 CCGCCACGGCATTAATGAAAA 60.135 47.619 19.73 0.00 41.17 2.29
704 728 2.481104 CCGCCACGGCATTAATGAAAAT 60.481 45.455 19.73 0.00 41.17 1.82
705 729 3.186119 CGCCACGGCATTAATGAAAATT 58.814 40.909 19.73 0.00 42.06 1.82
706 730 4.355437 CGCCACGGCATTAATGAAAATTA 58.645 39.130 19.73 0.00 42.06 1.40
707 731 4.800993 CGCCACGGCATTAATGAAAATTAA 59.199 37.500 19.73 0.00 42.06 1.40
708 732 5.289675 CGCCACGGCATTAATGAAAATTAAA 59.710 36.000 19.73 0.00 42.06 1.52
709 733 6.183360 CGCCACGGCATTAATGAAAATTAAAA 60.183 34.615 19.73 0.00 42.06 1.52
710 734 7.522374 GCCACGGCATTAATGAAAATTAAAAA 58.478 30.769 19.73 0.00 41.49 1.94
711 735 7.480229 GCCACGGCATTAATGAAAATTAAAAAC 59.520 33.333 19.73 0.00 41.49 2.43
712 736 8.499162 CCACGGCATTAATGAAAATTAAAAACA 58.501 29.630 19.73 0.00 30.78 2.83
713 737 9.869844 CACGGCATTAATGAAAATTAAAAACAA 57.130 25.926 19.73 0.00 30.78 2.83
728 752 9.454585 AATTAAAAACAAACTAAACTACGAGGC 57.545 29.630 0.00 0.00 0.00 4.70
729 753 4.720530 AAACAAACTAAACTACGAGGCG 57.279 40.909 0.00 0.00 0.00 5.52
730 754 2.680577 ACAAACTAAACTACGAGGCGG 58.319 47.619 0.00 0.00 0.00 6.13
731 755 1.392510 CAAACTAAACTACGAGGCGGC 59.607 52.381 0.00 0.00 0.00 6.53
732 756 0.457337 AACTAAACTACGAGGCGGCG 60.457 55.000 0.51 0.51 37.29 6.46
733 757 2.202650 TAAACTACGAGGCGGCGC 60.203 61.111 26.17 26.17 33.86 6.53
752 776 2.048127 GCTCTTGCCGTCCTTCGT 60.048 61.111 0.00 0.00 37.94 3.85
753 777 2.383527 GCTCTTGCCGTCCTTCGTG 61.384 63.158 0.00 0.00 37.94 4.35
754 778 1.738099 CTCTTGCCGTCCTTCGTGG 60.738 63.158 0.00 0.00 37.94 4.94
755 779 2.030562 CTTGCCGTCCTTCGTGGT 59.969 61.111 0.00 0.00 37.94 4.16
756 780 2.027625 CTTGCCGTCCTTCGTGGTC 61.028 63.158 0.00 0.00 37.94 4.02
757 781 3.851845 TTGCCGTCCTTCGTGGTCG 62.852 63.158 8.97 8.97 44.77 4.79
760 784 4.052229 CGTCCTTCGTGGTCGGCT 62.052 66.667 8.32 0.00 42.23 5.52
761 785 2.126031 GTCCTTCGTGGTCGGCTC 60.126 66.667 0.00 0.00 37.69 4.70
762 786 2.282958 TCCTTCGTGGTCGGCTCT 60.283 61.111 0.00 0.00 37.69 4.09
763 787 1.001764 TCCTTCGTGGTCGGCTCTA 60.002 57.895 0.00 0.00 37.69 2.43
764 788 0.609957 TCCTTCGTGGTCGGCTCTAA 60.610 55.000 0.00 0.00 37.69 2.10
765 789 0.460311 CCTTCGTGGTCGGCTCTAAT 59.540 55.000 0.00 0.00 37.69 1.73
766 790 1.560923 CTTCGTGGTCGGCTCTAATG 58.439 55.000 0.00 0.00 37.69 1.90
767 791 0.892755 TTCGTGGTCGGCTCTAATGT 59.107 50.000 0.00 0.00 37.69 2.71
768 792 0.892755 TCGTGGTCGGCTCTAATGTT 59.107 50.000 0.00 0.00 37.69 2.71
769 793 1.274167 TCGTGGTCGGCTCTAATGTTT 59.726 47.619 0.00 0.00 37.69 2.83
770 794 2.492881 TCGTGGTCGGCTCTAATGTTTA 59.507 45.455 0.00 0.00 37.69 2.01
771 795 3.056678 TCGTGGTCGGCTCTAATGTTTAA 60.057 43.478 0.00 0.00 37.69 1.52
772 796 3.869246 CGTGGTCGGCTCTAATGTTTAAT 59.131 43.478 0.00 0.00 0.00 1.40
773 797 4.331717 CGTGGTCGGCTCTAATGTTTAATT 59.668 41.667 0.00 0.00 0.00 1.40
774 798 5.521010 CGTGGTCGGCTCTAATGTTTAATTA 59.479 40.000 0.00 0.00 0.00 1.40
775 799 6.036300 CGTGGTCGGCTCTAATGTTTAATTAA 59.964 38.462 0.00 0.00 0.00 1.40
776 800 7.254658 CGTGGTCGGCTCTAATGTTTAATTAAT 60.255 37.037 0.00 0.00 0.00 1.40
777 801 9.048446 GTGGTCGGCTCTAATGTTTAATTAATA 57.952 33.333 0.00 0.00 0.00 0.98
778 802 9.787435 TGGTCGGCTCTAATGTTTAATTAATAT 57.213 29.630 0.00 0.00 0.00 1.28
829 853 2.834574 TTTTTCTCGCGCTGTCAAAA 57.165 40.000 5.56 3.09 0.00 2.44
830 854 3.347958 TTTTTCTCGCGCTGTCAAAAT 57.652 38.095 5.56 0.00 0.00 1.82
831 855 2.314561 TTTCTCGCGCTGTCAAAATG 57.685 45.000 5.56 0.00 0.00 2.32
832 856 0.516877 TTCTCGCGCTGTCAAAATGG 59.483 50.000 5.56 0.00 0.00 3.16
833 857 1.135315 CTCGCGCTGTCAAAATGGG 59.865 57.895 5.56 0.00 0.00 4.00
834 858 1.577328 CTCGCGCTGTCAAAATGGGT 61.577 55.000 5.56 0.00 0.00 4.51
835 859 1.154225 CGCGCTGTCAAAATGGGTC 60.154 57.895 5.56 0.00 0.00 4.46
836 860 1.154225 GCGCTGTCAAAATGGGTCG 60.154 57.895 0.00 0.00 0.00 4.79
837 861 1.501741 CGCTGTCAAAATGGGTCGG 59.498 57.895 0.00 0.00 0.00 4.79
838 862 1.883021 GCTGTCAAAATGGGTCGGG 59.117 57.895 0.00 0.00 0.00 5.14
839 863 1.883021 CTGTCAAAATGGGTCGGGC 59.117 57.895 0.00 0.00 0.00 6.13
840 864 1.595093 CTGTCAAAATGGGTCGGGCC 61.595 60.000 0.00 0.00 0.00 5.80
841 865 1.605165 GTCAAAATGGGTCGGGCCA 60.605 57.895 4.39 0.00 39.65 5.36
842 866 1.304052 TCAAAATGGGTCGGGCCAG 60.304 57.895 4.39 0.00 39.65 4.85
843 867 2.679996 AAAATGGGTCGGGCCAGC 60.680 61.111 4.39 0.00 39.65 4.85
859 883 2.886604 GCGTTGGGCGTATGCGTA 60.887 61.111 4.81 0.00 44.10 4.42
860 884 2.867091 GCGTTGGGCGTATGCGTAG 61.867 63.158 4.81 0.00 44.10 3.51
861 885 1.226745 CGTTGGGCGTATGCGTAGA 60.227 57.895 4.81 0.00 44.10 2.59
862 886 1.477030 CGTTGGGCGTATGCGTAGAC 61.477 60.000 4.81 0.00 44.10 2.59
863 887 1.142314 TTGGGCGTATGCGTAGACC 59.858 57.895 4.81 3.47 44.10 3.85
864 888 1.324740 TTGGGCGTATGCGTAGACCT 61.325 55.000 4.81 0.00 44.10 3.85
865 889 0.466007 TGGGCGTATGCGTAGACCTA 60.466 55.000 4.81 0.00 44.10 3.08
866 890 0.670162 GGGCGTATGCGTAGACCTAA 59.330 55.000 4.81 0.00 44.10 2.69
867 891 1.067516 GGGCGTATGCGTAGACCTAAA 59.932 52.381 4.81 0.00 44.10 1.85
868 892 2.288640 GGGCGTATGCGTAGACCTAAAT 60.289 50.000 4.81 0.00 44.10 1.40
869 893 2.729882 GGCGTATGCGTAGACCTAAATG 59.270 50.000 4.81 0.00 44.10 2.32
870 894 2.155155 GCGTATGCGTAGACCTAAATGC 59.845 50.000 4.81 0.00 40.81 3.56
871 895 2.404029 CGTATGCGTAGACCTAAATGCG 59.596 50.000 0.00 0.00 0.00 4.73
872 896 1.865865 ATGCGTAGACCTAAATGCGG 58.134 50.000 0.00 0.00 0.00 5.69
873 897 0.818938 TGCGTAGACCTAAATGCGGA 59.181 50.000 0.00 0.00 0.00 5.54
874 898 1.205179 TGCGTAGACCTAAATGCGGAA 59.795 47.619 0.00 0.00 0.00 4.30
875 899 1.859080 GCGTAGACCTAAATGCGGAAG 59.141 52.381 0.00 0.00 0.00 3.46
887 911 3.081133 CGGAAGCGGACGTTCATG 58.919 61.111 0.00 0.00 0.00 3.07
888 912 1.736645 CGGAAGCGGACGTTCATGT 60.737 57.895 0.00 0.00 0.00 3.21
889 913 1.289109 CGGAAGCGGACGTTCATGTT 61.289 55.000 0.00 0.00 0.00 2.71
890 914 0.442699 GGAAGCGGACGTTCATGTTC 59.557 55.000 0.00 0.00 0.00 3.18
891 915 0.093026 GAAGCGGACGTTCATGTTCG 59.907 55.000 0.00 9.77 43.78 3.95
893 917 2.776072 CGGACGTTCATGTTCGCC 59.224 61.111 10.88 11.39 33.48 5.54
894 918 1.736645 CGGACGTTCATGTTCGCCT 60.737 57.895 10.88 0.00 33.48 5.52
895 919 1.787847 GGACGTTCATGTTCGCCTG 59.212 57.895 10.88 0.00 0.00 4.85
896 920 0.949105 GGACGTTCATGTTCGCCTGT 60.949 55.000 10.88 0.00 0.00 4.00
897 921 0.438830 GACGTTCATGTTCGCCTGTC 59.561 55.000 10.88 0.52 0.00 3.51
898 922 0.949105 ACGTTCATGTTCGCCTGTCC 60.949 55.000 10.88 0.00 0.00 4.02
899 923 1.787847 GTTCATGTTCGCCTGTCCG 59.212 57.895 0.00 0.00 0.00 4.79
900 924 0.669318 GTTCATGTTCGCCTGTCCGA 60.669 55.000 0.00 0.00 35.09 4.55
901 925 0.389817 TTCATGTTCGCCTGTCCGAG 60.390 55.000 0.00 0.00 38.60 4.63
902 926 2.125512 ATGTTCGCCTGTCCGAGC 60.126 61.111 0.00 0.00 38.60 5.03
903 927 3.665675 ATGTTCGCCTGTCCGAGCC 62.666 63.158 0.00 0.00 37.60 4.70
904 928 4.373116 GTTCGCCTGTCCGAGCCA 62.373 66.667 0.00 0.00 38.60 4.75
905 929 3.621805 TTCGCCTGTCCGAGCCAA 61.622 61.111 0.00 0.00 38.60 4.52
906 930 3.171828 TTCGCCTGTCCGAGCCAAA 62.172 57.895 0.00 0.00 38.60 3.28
907 931 3.423154 CGCCTGTCCGAGCCAAAC 61.423 66.667 0.00 0.00 0.00 2.93
908 932 3.423154 GCCTGTCCGAGCCAAACG 61.423 66.667 0.00 0.00 0.00 3.60
916 940 3.928343 CGAGCCAAACGGACAAAAA 57.072 47.368 0.00 0.00 0.00 1.94
917 941 1.753956 CGAGCCAAACGGACAAAAAG 58.246 50.000 0.00 0.00 0.00 2.27
918 942 1.487482 GAGCCAAACGGACAAAAAGC 58.513 50.000 0.00 0.00 0.00 3.51
919 943 0.248866 AGCCAAACGGACAAAAAGCG 60.249 50.000 0.00 0.00 0.00 4.68
920 944 0.248702 GCCAAACGGACAAAAAGCGA 60.249 50.000 0.00 0.00 0.00 4.93
921 945 1.799548 GCCAAACGGACAAAAAGCGAA 60.800 47.619 0.00 0.00 0.00 4.70
922 946 2.738135 CCAAACGGACAAAAAGCGAAT 58.262 42.857 0.00 0.00 0.00 3.34
923 947 3.854045 GCCAAACGGACAAAAAGCGAATA 60.854 43.478 0.00 0.00 0.00 1.75
924 948 4.291783 CCAAACGGACAAAAAGCGAATAA 58.708 39.130 0.00 0.00 0.00 1.40
925 949 4.740695 CCAAACGGACAAAAAGCGAATAAA 59.259 37.500 0.00 0.00 0.00 1.40
926 950 5.232414 CCAAACGGACAAAAAGCGAATAAAA 59.768 36.000 0.00 0.00 0.00 1.52
927 951 6.074034 CCAAACGGACAAAAAGCGAATAAAAT 60.074 34.615 0.00 0.00 0.00 1.82
928 952 6.684609 AACGGACAAAAAGCGAATAAAATC 57.315 33.333 0.00 0.00 0.00 2.17
929 953 4.849383 ACGGACAAAAAGCGAATAAAATCG 59.151 37.500 0.00 0.00 45.41 3.34
937 961 1.986525 CGAATAAAATCGCCGTGTCG 58.013 50.000 0.00 0.00 35.85 4.35
948 972 4.657824 CGTGTCGGCCGTTGGAGT 62.658 66.667 27.15 0.00 0.00 3.85
949 973 2.280592 GTGTCGGCCGTTGGAGTT 60.281 61.111 27.15 0.00 0.00 3.01
950 974 2.280524 TGTCGGCCGTTGGAGTTG 60.281 61.111 27.15 0.00 0.00 3.16
951 975 3.723348 GTCGGCCGTTGGAGTTGC 61.723 66.667 27.15 1.64 0.00 4.17
952 976 3.936203 TCGGCCGTTGGAGTTGCT 61.936 61.111 27.15 0.00 0.00 3.91
953 977 3.423154 CGGCCGTTGGAGTTGCTC 61.423 66.667 19.50 0.00 0.00 4.26
954 978 2.032681 GGCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
955 979 1.600916 GGCCGTTGGAGTTGCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
956 980 0.321298 GGCCGTTGGAGTTGCTCTTA 60.321 55.000 0.00 0.00 0.00 2.10
957 981 1.519408 GCCGTTGGAGTTGCTCTTAA 58.481 50.000 0.00 0.00 0.00 1.85
958 982 1.464997 GCCGTTGGAGTTGCTCTTAAG 59.535 52.381 0.00 0.00 0.00 1.85
970 994 2.805845 GCTCTTAAGCCATCGTAACGA 58.194 47.619 0.00 0.00 43.10 3.85
983 1007 7.483691 AGCCATCGTAACGATTTATTTTTCAAC 59.516 33.333 0.00 0.00 44.59 3.18
1001 1026 3.465403 CTGACCCCTGCTCCCTCG 61.465 72.222 0.00 0.00 0.00 4.63
1033 1068 2.040544 CCTTGTAGCAGCGGTTGGG 61.041 63.158 0.00 0.00 0.00 4.12
1061 1096 1.081242 GCAATGAGCGTTGTGGTGG 60.081 57.895 4.54 0.00 0.00 4.61
1097 1132 3.301554 TCGTGTACCCCGCCGAAA 61.302 61.111 0.00 0.00 0.00 3.46
1145 1180 3.827784 CGTCTTTCGACCAGCGCG 61.828 66.667 0.00 0.00 42.86 6.86
1167 1202 2.106683 CCCCTTTCGCGGTCACATC 61.107 63.158 6.13 0.00 0.00 3.06
1204 1239 0.750850 ATCCGATCGACAATCCCGTT 59.249 50.000 18.66 0.00 0.00 4.44
1213 1248 2.159156 CGACAATCCCGTTGAGACCATA 60.159 50.000 0.00 0.00 40.37 2.74
1351 1398 1.525923 CTGTGCCCTGGATCTGGAG 59.474 63.158 0.00 0.00 0.00 3.86
1355 1402 1.074926 GCCCTGGATCTGGAGGAGA 60.075 63.158 0.00 0.00 34.25 3.71
1749 1817 1.956170 CCTGCACGCTGTTCGAAGT 60.956 57.895 0.00 0.00 41.67 3.01
2271 2356 0.671781 CTGCTCGTTCTTCACCCTGG 60.672 60.000 0.00 0.00 0.00 4.45
2272 2357 1.118965 TGCTCGTTCTTCACCCTGGA 61.119 55.000 0.00 0.00 0.00 3.86
2273 2358 0.034896 GCTCGTTCTTCACCCTGGAA 59.965 55.000 0.00 0.00 0.00 3.53
2274 2359 1.941668 GCTCGTTCTTCACCCTGGAAG 60.942 57.143 0.00 0.00 44.46 3.46
2275 2360 1.344763 CTCGTTCTTCACCCTGGAAGT 59.655 52.381 0.00 0.00 43.72 3.01
2276 2361 2.561419 CTCGTTCTTCACCCTGGAAGTA 59.439 50.000 0.00 0.00 43.72 2.24
2277 2362 2.967201 TCGTTCTTCACCCTGGAAGTAA 59.033 45.455 0.00 0.00 43.72 2.24
2278 2363 3.581332 TCGTTCTTCACCCTGGAAGTAAT 59.419 43.478 0.00 0.00 43.72 1.89
2279 2364 3.684788 CGTTCTTCACCCTGGAAGTAATG 59.315 47.826 0.00 0.00 43.72 1.90
2280 2365 4.652822 GTTCTTCACCCTGGAAGTAATGT 58.347 43.478 0.00 0.00 43.72 2.71
2281 2366 5.568023 CGTTCTTCACCCTGGAAGTAATGTA 60.568 44.000 0.00 0.00 43.72 2.29
2282 2367 5.416271 TCTTCACCCTGGAAGTAATGTAC 57.584 43.478 0.00 0.00 43.72 2.90
2283 2368 4.224370 TCTTCACCCTGGAAGTAATGTACC 59.776 45.833 0.00 0.00 43.72 3.34
2284 2369 3.522759 TCACCCTGGAAGTAATGTACCA 58.477 45.455 0.00 0.00 0.00 3.25
2285 2370 3.517901 TCACCCTGGAAGTAATGTACCAG 59.482 47.826 0.00 0.00 46.37 4.00
2286 2371 2.238898 ACCCTGGAAGTAATGTACCAGC 59.761 50.000 0.00 0.00 45.72 4.85
2287 2372 2.238646 CCCTGGAAGTAATGTACCAGCA 59.761 50.000 0.00 0.00 45.72 4.41
2288 2373 3.270877 CCTGGAAGTAATGTACCAGCAC 58.729 50.000 0.00 0.00 45.72 4.40
2289 2374 3.055094 CCTGGAAGTAATGTACCAGCACT 60.055 47.826 0.00 0.00 45.72 4.40
2290 2375 4.565652 CCTGGAAGTAATGTACCAGCACTT 60.566 45.833 0.00 0.00 45.72 3.16
2291 2376 4.980573 TGGAAGTAATGTACCAGCACTTT 58.019 39.130 0.00 0.00 29.89 2.66
2292 2377 5.001232 TGGAAGTAATGTACCAGCACTTTC 58.999 41.667 0.00 0.00 29.89 2.62
2293 2378 4.092968 GGAAGTAATGTACCAGCACTTTCG 59.907 45.833 0.00 0.00 29.89 3.46
2294 2379 4.267349 AGTAATGTACCAGCACTTTCGT 57.733 40.909 0.00 0.00 0.00 3.85
2295 2380 4.243270 AGTAATGTACCAGCACTTTCGTC 58.757 43.478 0.00 0.00 0.00 4.20
2296 2381 3.402628 AATGTACCAGCACTTTCGTCT 57.597 42.857 0.00 0.00 0.00 4.18
2297 2382 2.433868 TGTACCAGCACTTTCGTCTC 57.566 50.000 0.00 0.00 0.00 3.36
2298 2383 1.684450 TGTACCAGCACTTTCGTCTCA 59.316 47.619 0.00 0.00 0.00 3.27
2299 2384 2.288213 TGTACCAGCACTTTCGTCTCAG 60.288 50.000 0.00 0.00 0.00 3.35
2300 2385 0.034059 ACCAGCACTTTCGTCTCAGG 59.966 55.000 0.00 0.00 0.00 3.86
2301 2386 0.671781 CCAGCACTTTCGTCTCAGGG 60.672 60.000 0.00 0.00 0.00 4.45
2302 2387 0.671781 CAGCACTTTCGTCTCAGGGG 60.672 60.000 0.00 0.00 0.00 4.79
2303 2388 0.832135 AGCACTTTCGTCTCAGGGGA 60.832 55.000 0.00 0.00 0.00 4.81
2304 2389 0.390472 GCACTTTCGTCTCAGGGGAG 60.390 60.000 0.00 0.00 42.80 4.30
2313 2398 2.649742 TCTCAGGGGAGAAACCAGAT 57.350 50.000 0.00 0.00 46.94 2.90
2314 2399 2.921221 TCTCAGGGGAGAAACCAGATT 58.079 47.619 0.00 0.00 46.94 2.40
2315 2400 3.260205 TCTCAGGGGAGAAACCAGATTT 58.740 45.455 0.00 0.00 46.94 2.17
2316 2401 3.657727 TCTCAGGGGAGAAACCAGATTTT 59.342 43.478 0.00 0.00 46.94 1.82
2317 2402 4.013050 CTCAGGGGAGAAACCAGATTTTC 58.987 47.826 0.00 0.00 44.26 2.29
2318 2403 3.657727 TCAGGGGAGAAACCAGATTTTCT 59.342 43.478 0.00 0.00 46.41 2.52
2319 2404 4.849810 TCAGGGGAGAAACCAGATTTTCTA 59.150 41.667 0.00 0.00 44.27 2.10
2320 2405 4.944317 CAGGGGAGAAACCAGATTTTCTAC 59.056 45.833 0.00 0.00 44.27 2.59
2323 2408 4.576879 GGAGAAACCAGATTTTCTACCGT 58.423 43.478 0.00 0.00 44.27 4.83
2324 2409 4.392138 GGAGAAACCAGATTTTCTACCGTG 59.608 45.833 0.00 0.00 44.27 4.94
2325 2410 3.751698 AGAAACCAGATTTTCTACCGTGC 59.248 43.478 0.00 0.00 42.79 5.34
2326 2411 1.722011 ACCAGATTTTCTACCGTGCG 58.278 50.000 0.00 0.00 0.00 5.34
2327 2412 0.373716 CCAGATTTTCTACCGTGCGC 59.626 55.000 0.00 0.00 0.00 6.09
2328 2413 0.025001 CAGATTTTCTACCGTGCGCG 59.975 55.000 13.88 13.88 37.95 6.86
2329 2414 0.108992 AGATTTTCTACCGTGCGCGA 60.109 50.000 23.45 0.00 41.33 5.87
2330 2415 0.297820 GATTTTCTACCGTGCGCGAG 59.702 55.000 23.45 11.90 41.33 5.03
2331 2416 1.082117 ATTTTCTACCGTGCGCGAGG 61.082 55.000 23.45 17.86 41.33 4.63
2332 2417 4.789075 TTCTACCGTGCGCGAGGC 62.789 66.667 23.45 0.00 41.33 4.70
2368 2453 3.303132 GGCTCTCGTAACGCAATATTTGG 60.303 47.826 0.00 0.00 0.00 3.28
2373 2461 2.353269 CGTAACGCAATATTTGGGCAGA 59.647 45.455 4.43 0.00 46.40 4.26
2397 2485 4.336889 TCAGGTTTCACGTTTCAGAGAT 57.663 40.909 0.00 0.00 0.00 2.75
2402 2490 6.147821 CAGGTTTCACGTTTCAGAGATTATGT 59.852 38.462 0.00 0.00 0.00 2.29
2411 2499 8.414003 ACGTTTCAGAGATTATGTATGCTTCTA 58.586 33.333 0.00 0.00 0.00 2.10
2427 2515 3.618351 CTTCTACTCCCTCGTTCAGGTA 58.382 50.000 0.00 0.00 41.51 3.08
2465 2553 4.119862 TGAAGAAAGTTCGTCAAGGTGAG 58.880 43.478 7.14 0.00 41.50 3.51
2469 2557 2.510768 AGTTCGTCAAGGTGAGTGAC 57.489 50.000 0.00 0.00 41.66 3.67
2498 2586 6.009589 TCTCAAGGCTGAAATTCAACCAATA 58.990 36.000 16.69 1.77 35.13 1.90
2540 2628 2.482721 ACTTGGGTCGCGATTTTAACAG 59.517 45.455 14.06 5.09 0.00 3.16
2572 2660 3.624861 GCATATGGTGAGGAACTGACAAG 59.375 47.826 4.56 0.00 46.77 3.16
2573 2661 4.836825 CATATGGTGAGGAACTGACAAGT 58.163 43.478 0.00 0.00 46.77 3.16
2612 2730 2.716017 GCCGCTCTGCTACCACTCT 61.716 63.158 0.00 0.00 0.00 3.24
2822 2961 2.339712 GCCGCCTGCACACAAATT 59.660 55.556 0.00 0.00 40.77 1.82
2825 2964 0.109319 CCGCCTGCACACAAATTACC 60.109 55.000 0.00 0.00 0.00 2.85
2836 2975 5.434706 CACACAAATTACCATGATCGATCG 58.565 41.667 20.03 9.36 0.00 3.69
2885 3032 1.890876 ACTTGACACCGCATTTGCTA 58.109 45.000 0.51 0.00 39.32 3.49
2886 3033 1.535462 ACTTGACACCGCATTTGCTAC 59.465 47.619 0.51 0.00 39.32 3.58
2890 3037 0.810648 ACACCGCATTTGCTACCATG 59.189 50.000 0.51 0.00 39.32 3.66
2891 3038 0.810648 CACCGCATTTGCTACCATGT 59.189 50.000 0.51 0.00 39.32 3.21
2927 3076 3.064987 AACATAGCTCGCCGCGACT 62.065 57.895 12.39 15.82 45.59 4.18
2985 3134 4.796231 GTGGCGCGACATCTCCGT 62.796 66.667 22.20 0.00 0.00 4.69
2986 3135 4.492160 TGGCGCGACATCTCCGTC 62.492 66.667 12.71 0.00 0.00 4.79
2987 3136 4.492160 GGCGCGACATCTCCGTCA 62.492 66.667 12.10 0.00 35.54 4.35
2988 3137 2.278857 GCGCGACATCTCCGTCAT 60.279 61.111 12.10 0.00 35.54 3.06
2989 3138 1.008881 GCGCGACATCTCCGTCATA 60.009 57.895 12.10 0.00 35.54 2.15
2990 3139 1.269444 GCGCGACATCTCCGTCATAC 61.269 60.000 12.10 0.00 35.54 2.39
2991 3140 0.660595 CGCGACATCTCCGTCATACC 60.661 60.000 0.00 0.00 35.54 2.73
2992 3141 0.384309 GCGACATCTCCGTCATACCA 59.616 55.000 0.00 0.00 35.54 3.25
2993 3142 1.000163 GCGACATCTCCGTCATACCAT 60.000 52.381 0.00 0.00 35.54 3.55
2994 3143 2.666026 CGACATCTCCGTCATACCATG 58.334 52.381 0.00 0.00 35.54 3.66
2995 3144 2.034685 CGACATCTCCGTCATACCATGT 59.965 50.000 0.00 0.00 35.54 3.21
2996 3145 3.643763 GACATCTCCGTCATACCATGTC 58.356 50.000 0.00 0.00 35.88 3.06
2997 3146 3.031013 ACATCTCCGTCATACCATGTCA 58.969 45.455 0.00 0.00 0.00 3.58
2998 3147 3.643320 ACATCTCCGTCATACCATGTCAT 59.357 43.478 0.00 0.00 0.00 3.06
2999 3148 4.832823 ACATCTCCGTCATACCATGTCATA 59.167 41.667 0.00 0.00 0.00 2.15
3000 3149 4.848562 TCTCCGTCATACCATGTCATAC 57.151 45.455 0.00 0.00 0.00 2.39
3001 3150 4.470602 TCTCCGTCATACCATGTCATACT 58.529 43.478 0.00 0.00 0.00 2.12
3002 3151 4.278419 TCTCCGTCATACCATGTCATACTG 59.722 45.833 0.00 0.00 0.00 2.74
3003 3152 3.059884 CCGTCATACCATGTCATACTGC 58.940 50.000 0.00 0.00 0.00 4.40
3004 3153 2.726241 CGTCATACCATGTCATACTGCG 59.274 50.000 0.00 0.00 0.00 5.18
3005 3154 2.476619 GTCATACCATGTCATACTGCGC 59.523 50.000 0.00 0.00 0.00 6.09
3006 3155 2.102252 TCATACCATGTCATACTGCGCA 59.898 45.455 10.98 10.98 0.00 6.09
3007 3156 2.908688 TACCATGTCATACTGCGCAT 57.091 45.000 12.24 3.79 0.00 4.73
3008 3157 2.042686 ACCATGTCATACTGCGCATT 57.957 45.000 12.24 8.40 0.00 3.56
3009 3158 2.368439 ACCATGTCATACTGCGCATTT 58.632 42.857 12.24 3.19 0.00 2.32
3010 3159 2.097954 ACCATGTCATACTGCGCATTTG 59.902 45.455 12.24 9.39 0.00 2.32
3011 3160 2.114056 CATGTCATACTGCGCATTTGC 58.886 47.619 12.24 6.25 37.78 3.68
3012 3161 1.452110 TGTCATACTGCGCATTTGCT 58.548 45.000 12.24 0.00 39.32 3.91
3013 3162 2.626840 TGTCATACTGCGCATTTGCTA 58.373 42.857 12.24 0.00 39.32 3.49
3014 3163 2.351418 TGTCATACTGCGCATTTGCTAC 59.649 45.455 12.24 6.26 39.32 3.58
3015 3164 1.939934 TCATACTGCGCATTTGCTACC 59.060 47.619 12.24 0.00 39.32 3.18
3016 3165 1.670295 CATACTGCGCATTTGCTACCA 59.330 47.619 12.24 0.00 39.32 3.25
3017 3166 2.036958 TACTGCGCATTTGCTACCAT 57.963 45.000 12.24 0.00 39.32 3.55
3018 3167 0.452987 ACTGCGCATTTGCTACCATG 59.547 50.000 12.24 0.00 39.32 3.66
3019 3168 0.452987 CTGCGCATTTGCTACCATGT 59.547 50.000 12.24 0.00 39.32 3.21
3020 3169 0.451383 TGCGCATTTGCTACCATGTC 59.549 50.000 5.66 0.00 39.32 3.06
3021 3170 0.451383 GCGCATTTGCTACCATGTCA 59.549 50.000 0.30 0.00 39.32 3.58
3022 3171 1.066002 GCGCATTTGCTACCATGTCAT 59.934 47.619 0.30 0.00 39.32 3.06
3023 3172 2.290367 GCGCATTTGCTACCATGTCATA 59.710 45.455 0.30 0.00 39.32 2.15
3068 3234 1.224592 GTCGTGGCTGATGGGGAAT 59.775 57.895 0.00 0.00 0.00 3.01
3110 3279 2.661866 GACAGCGGCGTGTTCAGT 60.662 61.111 9.37 0.00 0.00 3.41
3113 3282 2.094659 CAGCGGCGTGTTCAGTAGG 61.095 63.158 9.37 0.00 0.00 3.18
3141 3310 3.706373 GGCCCTCCTCGCTGTTGA 61.706 66.667 0.00 0.00 0.00 3.18
3165 3334 6.026186 ACTTCCTCCAGATTCCTCTTCTTTA 58.974 40.000 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.166888 ATGCGCTGCCTCGGTGAT 62.167 61.111 9.73 0.00 0.00 3.06
1 2 4.819761 GATGCGCTGCCTCGGTGA 62.820 66.667 9.73 0.00 0.00 4.02
109 110 0.106167 CACTGGGTCCTCTCCGGATA 60.106 60.000 3.57 0.00 45.44 2.59
227 230 1.863662 GAGTCCCGTTGAGCGAGTCA 61.864 60.000 0.00 0.00 44.77 3.41
235 238 0.245539 GAACCATCGAGTCCCGTTGA 59.754 55.000 0.00 0.00 39.61 3.18
393 397 1.448922 GCTCGTCCACCTCGCTCTAT 61.449 60.000 0.00 0.00 0.00 1.98
394 398 2.113433 GCTCGTCCACCTCGCTCTA 61.113 63.158 0.00 0.00 0.00 2.43
420 424 4.077184 TTCCTCGTTCGCCGCCAT 62.077 61.111 0.00 0.00 36.19 4.40
702 726 9.454585 GCCTCGTAGTTTAGTTTGTTTTTAATT 57.545 29.630 0.00 0.00 0.00 1.40
703 727 7.799914 CGCCTCGTAGTTTAGTTTGTTTTTAAT 59.200 33.333 0.00 0.00 0.00 1.40
704 728 7.125113 CGCCTCGTAGTTTAGTTTGTTTTTAA 58.875 34.615 0.00 0.00 0.00 1.52
705 729 6.292811 CCGCCTCGTAGTTTAGTTTGTTTTTA 60.293 38.462 0.00 0.00 0.00 1.52
706 730 5.504392 CGCCTCGTAGTTTAGTTTGTTTTT 58.496 37.500 0.00 0.00 0.00 1.94
707 731 4.024641 CCGCCTCGTAGTTTAGTTTGTTTT 60.025 41.667 0.00 0.00 0.00 2.43
708 732 3.495753 CCGCCTCGTAGTTTAGTTTGTTT 59.504 43.478 0.00 0.00 0.00 2.83
709 733 3.062042 CCGCCTCGTAGTTTAGTTTGTT 58.938 45.455 0.00 0.00 0.00 2.83
710 734 2.680577 CCGCCTCGTAGTTTAGTTTGT 58.319 47.619 0.00 0.00 0.00 2.83
711 735 1.392510 GCCGCCTCGTAGTTTAGTTTG 59.607 52.381 0.00 0.00 0.00 2.93
712 736 1.718396 GCCGCCTCGTAGTTTAGTTT 58.282 50.000 0.00 0.00 0.00 2.66
713 737 0.457337 CGCCGCCTCGTAGTTTAGTT 60.457 55.000 0.00 0.00 0.00 2.24
714 738 1.138247 CGCCGCCTCGTAGTTTAGT 59.862 57.895 0.00 0.00 0.00 2.24
715 739 2.228914 GCGCCGCCTCGTAGTTTAG 61.229 63.158 0.00 0.00 0.00 1.85
716 740 2.202650 GCGCCGCCTCGTAGTTTA 60.203 61.111 0.00 0.00 0.00 2.01
744 768 1.310933 TAGAGCCGACCACGAAGGAC 61.311 60.000 5.70 0.00 42.66 3.85
745 769 0.609957 TTAGAGCCGACCACGAAGGA 60.610 55.000 5.70 0.00 42.66 3.36
746 770 0.460311 ATTAGAGCCGACCACGAAGG 59.540 55.000 0.00 0.00 42.66 3.46
747 771 1.135083 ACATTAGAGCCGACCACGAAG 60.135 52.381 0.00 0.00 42.66 3.79
748 772 0.892755 ACATTAGAGCCGACCACGAA 59.107 50.000 0.00 0.00 42.66 3.85
749 773 0.892755 AACATTAGAGCCGACCACGA 59.107 50.000 0.00 0.00 42.66 4.35
750 774 1.722011 AAACATTAGAGCCGACCACG 58.278 50.000 0.00 0.00 39.43 4.94
751 775 5.813080 AATTAAACATTAGAGCCGACCAC 57.187 39.130 0.00 0.00 0.00 4.16
752 776 9.787435 ATATTAATTAAACATTAGAGCCGACCA 57.213 29.630 1.21 0.00 0.00 4.02
810 834 2.834574 TTTTGACAGCGCGAGAAAAA 57.165 40.000 12.10 11.02 0.00 1.94
811 835 2.604373 CCATTTTGACAGCGCGAGAAAA 60.604 45.455 12.10 6.95 0.00 2.29
812 836 1.069296 CCATTTTGACAGCGCGAGAAA 60.069 47.619 12.10 0.66 0.00 2.52
813 837 0.516877 CCATTTTGACAGCGCGAGAA 59.483 50.000 12.10 0.00 0.00 2.87
814 838 1.298157 CCCATTTTGACAGCGCGAGA 61.298 55.000 12.10 0.00 0.00 4.04
815 839 1.135315 CCCATTTTGACAGCGCGAG 59.865 57.895 12.10 3.23 0.00 5.03
816 840 1.573829 GACCCATTTTGACAGCGCGA 61.574 55.000 12.10 0.00 0.00 5.87
817 841 1.154225 GACCCATTTTGACAGCGCG 60.154 57.895 0.00 0.00 0.00 6.86
818 842 1.154225 CGACCCATTTTGACAGCGC 60.154 57.895 0.00 0.00 0.00 5.92
819 843 1.501741 CCGACCCATTTTGACAGCG 59.498 57.895 0.00 0.00 0.00 5.18
820 844 1.883021 CCCGACCCATTTTGACAGC 59.117 57.895 0.00 0.00 0.00 4.40
821 845 1.595093 GGCCCGACCCATTTTGACAG 61.595 60.000 0.00 0.00 0.00 3.51
822 846 1.605165 GGCCCGACCCATTTTGACA 60.605 57.895 0.00 0.00 0.00 3.58
823 847 1.595093 CTGGCCCGACCCATTTTGAC 61.595 60.000 0.00 0.00 37.83 3.18
824 848 1.304052 CTGGCCCGACCCATTTTGA 60.304 57.895 0.00 0.00 37.83 2.69
825 849 3.005540 GCTGGCCCGACCCATTTTG 62.006 63.158 0.00 0.00 37.83 2.44
826 850 2.679996 GCTGGCCCGACCCATTTT 60.680 61.111 0.00 0.00 37.83 1.82
844 868 1.149964 GGTCTACGCATACGCCCAAC 61.150 60.000 0.00 0.00 45.53 3.77
845 869 1.142314 GGTCTACGCATACGCCCAA 59.858 57.895 0.00 0.00 45.53 4.12
846 870 0.466007 TAGGTCTACGCATACGCCCA 60.466 55.000 0.00 0.00 45.53 5.36
847 871 0.670162 TTAGGTCTACGCATACGCCC 59.330 55.000 0.00 0.00 45.53 6.13
848 872 2.497107 TTTAGGTCTACGCATACGCC 57.503 50.000 0.00 0.00 45.53 5.68
849 873 2.155155 GCATTTAGGTCTACGCATACGC 59.845 50.000 0.00 0.00 45.53 4.42
851 875 2.729882 CCGCATTTAGGTCTACGCATAC 59.270 50.000 0.00 0.00 0.00 2.39
852 876 2.624364 TCCGCATTTAGGTCTACGCATA 59.376 45.455 0.00 0.00 0.00 3.14
853 877 1.411246 TCCGCATTTAGGTCTACGCAT 59.589 47.619 0.00 0.00 0.00 4.73
854 878 0.818938 TCCGCATTTAGGTCTACGCA 59.181 50.000 0.00 0.00 0.00 5.24
855 879 1.859080 CTTCCGCATTTAGGTCTACGC 59.141 52.381 0.00 0.00 0.00 4.42
856 880 1.859080 GCTTCCGCATTTAGGTCTACG 59.141 52.381 0.00 0.00 35.78 3.51
857 881 1.859080 CGCTTCCGCATTTAGGTCTAC 59.141 52.381 0.00 0.00 35.30 2.59
858 882 1.202486 CCGCTTCCGCATTTAGGTCTA 60.202 52.381 0.00 0.00 35.30 2.59
859 883 0.462047 CCGCTTCCGCATTTAGGTCT 60.462 55.000 0.00 0.00 35.30 3.85
860 884 0.461339 TCCGCTTCCGCATTTAGGTC 60.461 55.000 0.00 0.00 35.30 3.85
861 885 0.743345 GTCCGCTTCCGCATTTAGGT 60.743 55.000 0.00 0.00 35.30 3.08
862 886 1.762222 CGTCCGCTTCCGCATTTAGG 61.762 60.000 0.00 0.00 35.30 2.69
863 887 1.082117 ACGTCCGCTTCCGCATTTAG 61.082 55.000 0.00 0.00 35.30 1.85
864 888 0.671163 AACGTCCGCTTCCGCATTTA 60.671 50.000 0.00 0.00 35.30 1.40
865 889 1.908066 GAACGTCCGCTTCCGCATTT 61.908 55.000 0.00 0.00 35.30 2.32
866 890 2.358247 AACGTCCGCTTCCGCATT 60.358 55.556 0.00 0.00 35.30 3.56
867 891 2.813908 GAACGTCCGCTTCCGCAT 60.814 61.111 0.00 0.00 35.30 4.73
868 892 3.583276 ATGAACGTCCGCTTCCGCA 62.583 57.895 0.00 0.00 35.30 5.69
869 893 2.813908 ATGAACGTCCGCTTCCGC 60.814 61.111 0.00 0.00 0.00 5.54
870 894 1.289109 AACATGAACGTCCGCTTCCG 61.289 55.000 0.00 0.00 0.00 4.30
871 895 0.442699 GAACATGAACGTCCGCTTCC 59.557 55.000 0.00 0.00 0.00 3.46
872 896 0.093026 CGAACATGAACGTCCGCTTC 59.907 55.000 0.00 0.00 0.00 3.86
873 897 1.897398 GCGAACATGAACGTCCGCTT 61.897 55.000 0.00 0.00 39.57 4.68
874 898 2.380410 GCGAACATGAACGTCCGCT 61.380 57.895 0.00 0.00 39.57 5.52
875 899 2.095843 GCGAACATGAACGTCCGC 59.904 61.111 0.00 1.14 35.91 5.54
876 900 1.736645 AGGCGAACATGAACGTCCG 60.737 57.895 14.48 3.91 34.58 4.79
877 901 0.949105 ACAGGCGAACATGAACGTCC 60.949 55.000 14.48 14.85 34.58 4.79
878 902 0.438830 GACAGGCGAACATGAACGTC 59.561 55.000 0.00 6.24 0.00 4.34
879 903 0.949105 GGACAGGCGAACATGAACGT 60.949 55.000 0.00 0.00 0.00 3.99
880 904 1.787847 GGACAGGCGAACATGAACG 59.212 57.895 0.00 5.80 0.00 3.95
881 905 0.669318 TCGGACAGGCGAACATGAAC 60.669 55.000 0.00 0.00 0.00 3.18
882 906 0.389817 CTCGGACAGGCGAACATGAA 60.390 55.000 0.00 0.00 0.00 2.57
883 907 1.215382 CTCGGACAGGCGAACATGA 59.785 57.895 0.00 0.00 0.00 3.07
884 908 2.456119 GCTCGGACAGGCGAACATG 61.456 63.158 0.00 0.00 0.00 3.21
885 909 2.125512 GCTCGGACAGGCGAACAT 60.126 61.111 0.00 0.00 0.00 2.71
886 910 4.373116 GGCTCGGACAGGCGAACA 62.373 66.667 0.00 0.00 38.06 3.18
898 922 1.753956 CTTTTTGTCCGTTTGGCTCG 58.246 50.000 0.00 0.00 34.14 5.03
899 923 1.487482 GCTTTTTGTCCGTTTGGCTC 58.513 50.000 0.00 0.00 34.14 4.70
900 924 0.248866 CGCTTTTTGTCCGTTTGGCT 60.249 50.000 0.00 0.00 34.14 4.75
901 925 0.248702 TCGCTTTTTGTCCGTTTGGC 60.249 50.000 0.00 0.00 34.14 4.52
902 926 2.196295 TTCGCTTTTTGTCCGTTTGG 57.804 45.000 0.00 0.00 0.00 3.28
903 927 5.874892 TTTATTCGCTTTTTGTCCGTTTG 57.125 34.783 0.00 0.00 0.00 2.93
904 928 6.129300 CGATTTTATTCGCTTTTTGTCCGTTT 60.129 34.615 0.00 0.00 31.60 3.60
905 929 5.341196 CGATTTTATTCGCTTTTTGTCCGTT 59.659 36.000 0.00 0.00 31.60 4.44
906 930 4.849383 CGATTTTATTCGCTTTTTGTCCGT 59.151 37.500 0.00 0.00 31.60 4.69
907 931 5.342330 CGATTTTATTCGCTTTTTGTCCG 57.658 39.130 0.00 0.00 31.60 4.79
918 942 1.331680 CCGACACGGCGATTTTATTCG 60.332 52.381 16.62 9.89 41.17 3.34
919 943 2.362668 CCGACACGGCGATTTTATTC 57.637 50.000 16.62 0.00 41.17 1.75
931 955 4.657824 ACTCCAACGGCCGACACG 62.658 66.667 35.90 17.64 37.36 4.49
932 956 2.280592 AACTCCAACGGCCGACAC 60.281 61.111 35.90 0.00 0.00 3.67
933 957 2.280524 CAACTCCAACGGCCGACA 60.281 61.111 35.90 11.12 0.00 4.35
934 958 3.723348 GCAACTCCAACGGCCGAC 61.723 66.667 35.90 5.16 0.00 4.79
935 959 3.876589 GAGCAACTCCAACGGCCGA 62.877 63.158 35.90 8.44 0.00 5.54
936 960 3.423154 GAGCAACTCCAACGGCCG 61.423 66.667 26.86 26.86 0.00 6.13
937 961 0.321298 TAAGAGCAACTCCAACGGCC 60.321 55.000 0.00 0.00 0.00 6.13
938 962 1.464997 CTTAAGAGCAACTCCAACGGC 59.535 52.381 0.00 0.00 0.00 5.68
946 970 8.781050 ATCGTTACGATGGCTTAAGAGCAACT 62.781 42.308 19.87 0.00 45.51 3.16
947 971 6.693646 ATCGTTACGATGGCTTAAGAGCAAC 61.694 44.000 19.87 0.00 45.51 4.17
948 972 4.679639 ATCGTTACGATGGCTTAAGAGCAA 60.680 41.667 19.87 0.00 45.51 3.91
949 973 3.181479 ATCGTTACGATGGCTTAAGAGCA 60.181 43.478 19.87 0.00 45.51 4.26
950 974 3.381949 ATCGTTACGATGGCTTAAGAGC 58.618 45.455 19.87 0.00 45.24 4.09
951 975 5.968387 AAATCGTTACGATGGCTTAAGAG 57.032 39.130 21.20 0.00 46.30 2.85
952 976 8.428186 AAATAAATCGTTACGATGGCTTAAGA 57.572 30.769 21.20 0.00 46.30 2.10
953 977 9.498307 AAAAATAAATCGTTACGATGGCTTAAG 57.502 29.630 21.20 0.00 46.30 1.85
954 978 9.493206 GAAAAATAAATCGTTACGATGGCTTAA 57.507 29.630 21.20 4.05 46.30 1.85
955 979 8.666573 TGAAAAATAAATCGTTACGATGGCTTA 58.333 29.630 21.20 15.42 46.30 3.09
956 980 7.531716 TGAAAAATAAATCGTTACGATGGCTT 58.468 30.769 21.20 13.77 46.30 4.35
957 981 7.079182 TGAAAAATAAATCGTTACGATGGCT 57.921 32.000 21.20 11.09 46.30 4.75
958 982 7.253519 GGTTGAAAAATAAATCGTTACGATGGC 60.254 37.037 21.20 5.49 46.30 4.40
959 983 7.966204 AGGTTGAAAAATAAATCGTTACGATGG 59.034 33.333 21.20 0.00 46.30 3.51
960 984 8.785101 CAGGTTGAAAAATAAATCGTTACGATG 58.215 33.333 21.20 0.31 46.30 3.84
962 986 8.011106 GTCAGGTTGAAAAATAAATCGTTACGA 58.989 33.333 10.62 10.62 41.13 3.43
963 987 7.269724 GGTCAGGTTGAAAAATAAATCGTTACG 59.730 37.037 0.00 0.00 0.00 3.18
964 988 7.539710 GGGTCAGGTTGAAAAATAAATCGTTAC 59.460 37.037 0.00 0.00 0.00 2.50
965 989 7.309316 GGGGTCAGGTTGAAAAATAAATCGTTA 60.309 37.037 0.00 0.00 0.00 3.18
966 990 6.452242 GGGTCAGGTTGAAAAATAAATCGTT 58.548 36.000 0.00 0.00 0.00 3.85
967 991 5.047590 GGGGTCAGGTTGAAAAATAAATCGT 60.048 40.000 0.00 0.00 0.00 3.73
968 992 5.185056 AGGGGTCAGGTTGAAAAATAAATCG 59.815 40.000 0.00 0.00 0.00 3.34
969 993 6.398095 CAGGGGTCAGGTTGAAAAATAAATC 58.602 40.000 0.00 0.00 0.00 2.17
970 994 5.279960 GCAGGGGTCAGGTTGAAAAATAAAT 60.280 40.000 0.00 0.00 0.00 1.40
983 1007 3.086600 GAGGGAGCAGGGGTCAGG 61.087 72.222 0.00 0.00 0.00 3.86
1009 1034 0.459237 CCGCTGCTACAAGGAGTCAG 60.459 60.000 0.00 1.03 35.94 3.51
1010 1035 1.185618 ACCGCTGCTACAAGGAGTCA 61.186 55.000 0.00 0.00 35.94 3.41
1011 1036 0.037232 AACCGCTGCTACAAGGAGTC 60.037 55.000 0.00 0.00 35.94 3.36
1033 1068 3.037431 ACGCTCATTGCTATGGATCTC 57.963 47.619 8.30 0.00 40.11 2.75
1167 1202 0.179100 ATGGTCGAACATGAGGAGCG 60.179 55.000 16.83 0.00 0.00 5.03
1204 1239 1.153449 CGCCCGCTTTATGGTCTCA 60.153 57.895 0.00 0.00 0.00 3.27
1330 1377 1.153208 CAGATCCAGGGCACAGCTC 60.153 63.158 0.00 0.00 0.00 4.09
2228 2311 1.175654 TCACATCACATTGCCGCAAT 58.824 45.000 13.00 13.00 34.04 3.56
2271 2356 4.689345 ACGAAAGTGCTGGTACATTACTTC 59.311 41.667 0.00 0.00 46.97 3.01
2272 2357 4.638304 ACGAAAGTGCTGGTACATTACTT 58.362 39.130 0.00 0.00 46.97 2.24
2273 2358 4.267349 ACGAAAGTGCTGGTACATTACT 57.733 40.909 0.00 0.00 46.97 2.24
2294 2379 2.649742 ATCTGGTTTCTCCCCTGAGA 57.350 50.000 0.00 0.00 45.90 3.27
2295 2380 3.728385 AAATCTGGTTTCTCCCCTGAG 57.272 47.619 0.00 0.00 40.17 3.35
2296 2381 3.657727 AGAAAATCTGGTTTCTCCCCTGA 59.342 43.478 0.00 0.00 42.88 3.86
2297 2382 4.039603 AGAAAATCTGGTTTCTCCCCTG 57.960 45.455 0.00 0.00 42.88 4.45
2298 2383 4.018324 GGTAGAAAATCTGGTTTCTCCCCT 60.018 45.833 3.57 0.00 42.88 4.79
2299 2384 4.270834 GGTAGAAAATCTGGTTTCTCCCC 58.729 47.826 3.57 2.90 42.88 4.81
2300 2385 3.939592 CGGTAGAAAATCTGGTTTCTCCC 59.060 47.826 3.57 1.93 42.88 4.30
2301 2386 4.392138 CACGGTAGAAAATCTGGTTTCTCC 59.608 45.833 3.57 5.23 42.88 3.71
2302 2387 4.142881 GCACGGTAGAAAATCTGGTTTCTC 60.143 45.833 3.57 0.77 42.88 2.87
2303 2388 3.751698 GCACGGTAGAAAATCTGGTTTCT 59.248 43.478 5.58 5.58 46.88 2.52
2304 2389 3.424433 CGCACGGTAGAAAATCTGGTTTC 60.424 47.826 0.00 0.00 37.70 2.78
2305 2390 2.482721 CGCACGGTAGAAAATCTGGTTT 59.517 45.455 0.00 0.00 0.00 3.27
2306 2391 2.073816 CGCACGGTAGAAAATCTGGTT 58.926 47.619 0.00 0.00 0.00 3.67
2307 2392 1.722011 CGCACGGTAGAAAATCTGGT 58.278 50.000 0.00 0.00 0.00 4.00
2308 2393 0.373716 GCGCACGGTAGAAAATCTGG 59.626 55.000 0.30 0.00 0.00 3.86
2309 2394 0.025001 CGCGCACGGTAGAAAATCTG 59.975 55.000 8.75 0.00 34.97 2.90
2310 2395 0.108992 TCGCGCACGGTAGAAAATCT 60.109 50.000 8.75 0.00 40.63 2.40
2311 2396 0.297820 CTCGCGCACGGTAGAAAATC 59.702 55.000 8.75 0.00 40.63 2.17
2312 2397 1.082117 CCTCGCGCACGGTAGAAAAT 61.082 55.000 8.75 0.00 40.63 1.82
2313 2398 1.735198 CCTCGCGCACGGTAGAAAA 60.735 57.895 8.75 0.00 40.63 2.29
2314 2399 2.126228 CCTCGCGCACGGTAGAAA 60.126 61.111 8.75 0.00 40.63 2.52
2315 2400 4.789075 GCCTCGCGCACGGTAGAA 62.789 66.667 8.75 0.00 40.63 2.10
2326 2411 3.876589 TTCCTCGGTGTTGCCTCGC 62.877 63.158 0.00 0.00 34.25 5.03
2327 2412 1.079127 ATTCCTCGGTGTTGCCTCG 60.079 57.895 0.00 0.00 34.25 4.63
2328 2413 1.026718 CCATTCCTCGGTGTTGCCTC 61.027 60.000 0.00 0.00 34.25 4.70
2329 2414 1.002134 CCATTCCTCGGTGTTGCCT 60.002 57.895 0.00 0.00 34.25 4.75
2330 2415 2.700773 GCCATTCCTCGGTGTTGCC 61.701 63.158 0.00 0.00 0.00 4.52
2331 2416 1.648467 GAGCCATTCCTCGGTGTTGC 61.648 60.000 0.00 0.00 0.00 4.17
2332 2417 0.036010 AGAGCCATTCCTCGGTGTTG 60.036 55.000 0.00 0.00 36.95 3.33
2333 2418 0.250513 GAGAGCCATTCCTCGGTGTT 59.749 55.000 0.00 0.00 36.95 3.32
2334 2419 1.901085 GAGAGCCATTCCTCGGTGT 59.099 57.895 0.00 0.00 36.95 4.16
2335 2420 1.227089 CGAGAGCCATTCCTCGGTG 60.227 63.158 0.00 0.00 45.93 4.94
2336 2421 3.211288 CGAGAGCCATTCCTCGGT 58.789 61.111 0.00 0.00 45.93 4.69
2356 2441 3.446873 TGAATTCTGCCCAAATATTGCGT 59.553 39.130 7.05 0.00 0.00 5.24
2368 2453 1.880027 ACGTGAAACCTGAATTCTGCC 59.120 47.619 7.05 0.00 0.00 4.85
2369 2454 3.626028 AACGTGAAACCTGAATTCTGC 57.374 42.857 7.05 0.00 0.00 4.26
2373 2461 5.123227 TCTCTGAAACGTGAAACCTGAATT 58.877 37.500 0.00 0.00 0.00 2.17
2397 2485 5.138276 ACGAGGGAGTAGAAGCATACATAA 58.862 41.667 0.00 0.00 0.00 1.90
2402 2490 3.628008 TGAACGAGGGAGTAGAAGCATA 58.372 45.455 0.00 0.00 0.00 3.14
2427 2515 6.489361 ACTTTCTTCAGATCAAAGTCTTGCAT 59.511 34.615 0.00 0.00 35.86 3.96
2465 2553 2.783135 TCAGCCTTGAGAAATGGTCAC 58.217 47.619 0.00 0.00 0.00 3.67
2469 2557 5.395682 TGAATTTCAGCCTTGAGAAATGG 57.604 39.130 0.00 0.00 42.02 3.16
2498 2586 7.201617 CCAAGTTTCTTAGTTTCGTCAAGTCTT 60.202 37.037 0.00 0.00 0.00 3.01
2540 2628 5.368145 TCCTCACCATATGCTACATTGAAC 58.632 41.667 0.00 0.00 0.00 3.18
2557 2645 1.953559 TGCACTTGTCAGTTCCTCAC 58.046 50.000 0.00 0.00 0.00 3.51
2572 2660 4.622740 GCACAAAGAAAATGGACTATGCAC 59.377 41.667 0.00 0.00 0.00 4.57
2573 2661 4.321899 GGCACAAAGAAAATGGACTATGCA 60.322 41.667 0.00 0.00 0.00 3.96
2822 2961 2.160205 GGAGTCCGATCGATCATGGTA 58.840 52.381 24.40 6.77 0.00 3.25
2890 3037 2.866762 GTTGCGATTCTCCAGGTATGAC 59.133 50.000 0.00 0.00 0.00 3.06
2891 3038 2.499693 TGTTGCGATTCTCCAGGTATGA 59.500 45.455 0.00 0.00 0.00 2.15
2927 3076 2.438975 ACCGAGCCGTCCGATGTA 60.439 61.111 0.00 0.00 0.00 2.29
2978 3127 5.047731 CAGTATGACATGGTATGACGGAGAT 60.048 44.000 0.00 0.00 39.69 2.75
2979 3128 4.278419 CAGTATGACATGGTATGACGGAGA 59.722 45.833 0.00 0.00 39.69 3.71
2981 3130 3.243737 GCAGTATGACATGGTATGACGGA 60.244 47.826 0.00 0.00 39.69 4.69
2983 3132 2.726241 CGCAGTATGACATGGTATGACG 59.274 50.000 0.00 0.00 39.69 4.35
2984 3133 2.476619 GCGCAGTATGACATGGTATGAC 59.523 50.000 0.30 0.00 39.69 3.06
2985 3134 2.102252 TGCGCAGTATGACATGGTATGA 59.898 45.455 5.66 0.00 39.69 2.15
2986 3135 2.482864 TGCGCAGTATGACATGGTATG 58.517 47.619 5.66 0.00 39.69 2.39
2987 3136 2.908688 TGCGCAGTATGACATGGTAT 57.091 45.000 5.66 0.00 39.69 2.73
2988 3137 2.908688 ATGCGCAGTATGACATGGTA 57.091 45.000 18.32 0.00 39.69 3.25
2989 3138 2.042686 AATGCGCAGTATGACATGGT 57.957 45.000 18.32 0.00 39.69 3.55
2990 3139 2.723209 CAAATGCGCAGTATGACATGG 58.277 47.619 18.32 0.00 39.69 3.66
2991 3140 2.114056 GCAAATGCGCAGTATGACATG 58.886 47.619 18.32 8.54 39.69 3.21
2992 3141 2.480224 GCAAATGCGCAGTATGACAT 57.520 45.000 18.32 0.00 39.69 3.06
2993 3142 3.994729 GCAAATGCGCAGTATGACA 57.005 47.368 18.32 0.00 39.69 3.58
3004 3153 3.885297 AGGTATGACATGGTAGCAAATGC 59.115 43.478 0.00 0.00 42.49 3.56
3005 3154 4.261322 GCAGGTATGACATGGTAGCAAATG 60.261 45.833 0.00 0.00 29.37 2.32
3006 3155 3.885297 GCAGGTATGACATGGTAGCAAAT 59.115 43.478 0.00 0.00 29.37 2.32
3007 3156 3.278574 GCAGGTATGACATGGTAGCAAA 58.721 45.455 0.00 0.00 29.37 3.68
3008 3157 2.238395 TGCAGGTATGACATGGTAGCAA 59.762 45.455 0.00 0.00 29.37 3.91
3009 3158 1.836802 TGCAGGTATGACATGGTAGCA 59.163 47.619 0.00 0.00 29.37 3.49
3010 3159 2.487934 CTGCAGGTATGACATGGTAGC 58.512 52.381 5.57 0.00 29.37 3.58
3011 3160 2.158914 TGCTGCAGGTATGACATGGTAG 60.159 50.000 17.12 0.00 29.37 3.18
3012 3161 1.836802 TGCTGCAGGTATGACATGGTA 59.163 47.619 17.12 0.00 29.37 3.25
3013 3162 0.620030 TGCTGCAGGTATGACATGGT 59.380 50.000 17.12 0.00 29.37 3.55
3014 3163 1.306148 CTGCTGCAGGTATGACATGG 58.694 55.000 21.71 0.00 29.37 3.66
3015 3164 0.661552 GCTGCTGCAGGTATGACATG 59.338 55.000 29.05 2.86 39.41 3.21
3016 3165 0.545171 AGCTGCTGCAGGTATGACAT 59.455 50.000 30.72 0.00 40.59 3.06
3017 3166 0.107993 GAGCTGCTGCAGGTATGACA 60.108 55.000 31.60 2.34 42.53 3.58
3018 3167 0.813210 GGAGCTGCTGCAGGTATGAC 60.813 60.000 31.60 19.65 42.53 3.06
3019 3168 1.524002 GGAGCTGCTGCAGGTATGA 59.476 57.895 31.60 0.00 42.53 2.15
3020 3169 1.525535 GGGAGCTGCTGCAGGTATG 60.526 63.158 31.60 7.91 42.53 2.39
3021 3170 2.914289 GGGAGCTGCTGCAGGTAT 59.086 61.111 31.60 6.51 42.53 2.73
3022 3171 3.774528 CGGGAGCTGCTGCAGGTA 61.775 66.667 31.60 0.00 42.53 3.08
3141 3310 4.073425 AGAAGAGGAATCTGGAGGAAGT 57.927 45.455 0.00 0.00 0.00 3.01
3202 3371 1.537202 CAAAGAAGGTGAAAGCCGAGG 59.463 52.381 0.00 0.00 32.25 4.63
3249 3418 3.647824 GCATATGCTGGCGGAGAC 58.352 61.111 20.64 0.00 38.21 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.