Multiple sequence alignment - TraesCS7B01G037900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G037900 chr7B 100.000 2759 0 0 1 2759 36965833 36968591 0.000000e+00 5096.0
1 TraesCS7B01G037900 chr7B 81.818 187 27 6 88 271 212062856 212062674 1.710000e-32 150.0
2 TraesCS7B01G037900 chr1A 98.806 1508 16 2 757 2263 555512575 555514081 0.000000e+00 2684.0
3 TraesCS7B01G037900 chr1A 95.311 917 38 3 1347 2260 590250925 590251839 0.000000e+00 1450.0
4 TraesCS7B01G037900 chr1A 85.714 224 19 5 1 212 403376544 403376322 9.940000e-55 224.0
5 TraesCS7B01G037900 chr1A 78.073 301 54 7 1 296 475140470 475140177 2.180000e-41 180.0
6 TraesCS7B01G037900 chr1A 83.784 148 24 0 2496 2643 460334684 460334831 1.030000e-29 141.0
7 TraesCS7B01G037900 chr5A 89.993 1519 125 18 757 2262 407874589 407873085 0.000000e+00 1938.0
8 TraesCS7B01G037900 chr5A 82.955 88 13 2 406 492 596039299 596039385 8.190000e-11 78.7
9 TraesCS7B01G037900 chr2B 89.126 1499 129 16 783 2268 348078075 348076598 0.000000e+00 1834.0
10 TraesCS7B01G037900 chr2B 84.733 131 9 11 2137 2265 38212173 38212294 1.340000e-23 121.0
11 TraesCS7B01G037900 chr2B 84.034 119 13 3 381 499 671047457 671047569 2.900000e-20 110.0
12 TraesCS7B01G037900 chr5D 93.571 1120 62 6 1156 2271 230026142 230025029 0.000000e+00 1661.0
13 TraesCS7B01G037900 chr5D 96.918 292 9 0 764 1055 230026896 230026605 8.880000e-135 490.0
14 TraesCS7B01G037900 chr5D 97.727 44 1 0 989 1032 230026611 230026568 2.950000e-10 76.8
15 TraesCS7B01G037900 chr3A 95.243 946 41 3 1321 2262 697628654 697629599 0.000000e+00 1495.0
16 TraesCS7B01G037900 chr3A 88.746 311 15 7 2449 2759 679693556 679693266 2.020000e-96 363.0
17 TraesCS7B01G037900 chr3A 85.656 244 23 5 381 621 679694267 679694033 2.120000e-61 246.0
18 TraesCS7B01G037900 chr3A 91.765 170 14 0 2263 2432 679693711 679693542 1.280000e-58 237.0
19 TraesCS7B01G037900 chr3A 87.719 114 11 3 2152 2264 121407930 121408041 2.230000e-26 130.0
20 TraesCS7B01G037900 chr3A 77.350 234 43 8 1740 1968 550487949 550488177 2.230000e-26 130.0
21 TraesCS7B01G037900 chr3A 100.000 30 0 0 618 647 679693798 679693769 3.840000e-04 56.5
22 TraesCS7B01G037900 chr1D 95.161 310 11 3 2450 2759 53229543 53229848 1.150000e-133 486.0
23 TraesCS7B01G037900 chr1D 94.565 92 5 0 2341 2432 53229465 53229556 2.860000e-30 143.0
24 TraesCS7B01G037900 chr1D 87.129 101 13 0 520 620 53229007 53229107 6.240000e-22 115.0
25 TraesCS7B01G037900 chr1D 82.258 124 17 4 2262 2382 195170795 195170916 4.860000e-18 102.0
26 TraesCS7B01G037900 chr1D 100.000 30 0 0 618 647 53229343 53229372 3.840000e-04 56.5
27 TraesCS7B01G037900 chr2D 83.660 306 36 5 4 296 90368190 90367886 2.710000e-70 276.0
28 TraesCS7B01G037900 chr2D 84.685 111 17 0 381 491 594505007 594504897 8.080000e-21 111.0
29 TraesCS7B01G037900 chr5B 83.636 275 39 6 1 271 677332310 677332582 1.270000e-63 254.0
30 TraesCS7B01G037900 chr3B 84.921 252 30 4 1 244 53245990 53245739 5.900000e-62 248.0
31 TraesCS7B01G037900 chr3B 83.468 248 25 7 1 245 389309194 389309428 1.660000e-52 217.0
32 TraesCS7B01G037900 chr3B 80.702 114 19 3 381 491 7620874 7620987 4.900000e-13 86.1
33 TraesCS7B01G037900 chr1B 81.935 310 40 9 1 296 503343699 503343392 5.900000e-62 248.0
34 TraesCS7B01G037900 chr6D 83.039 283 33 7 3 273 153166687 153166408 2.750000e-60 243.0
35 TraesCS7B01G037900 chr6D 75.664 226 31 17 764 979 25833947 25833736 1.050000e-14 91.6
36 TraesCS7B01G037900 chr3D 79.734 301 50 8 1 296 441447607 441447313 1.000000e-49 207.0
37 TraesCS7B01G037900 chr3D 77.273 264 40 7 4 263 34739648 34739895 1.330000e-28 137.0
38 TraesCS7B01G037900 chr3D 76.667 240 47 4 381 620 598485136 598485366 1.040000e-24 124.0
39 TraesCS7B01G037900 chr3D 83.333 120 20 0 380 499 557606285 557606166 8.080000e-21 111.0
40 TraesCS7B01G037900 chr2A 74.046 524 87 34 1748 2261 54463196 54462712 4.730000e-38 169.0
41 TraesCS7B01G037900 chr6A 81.019 216 31 8 768 979 73540872 73541081 2.200000e-36 163.0
42 TraesCS7B01G037900 chr6A 73.372 522 92 34 1748 2261 73541863 73542345 1.710000e-32 150.0
43 TraesCS7B01G037900 chr7D 87.500 112 14 0 380 491 114607271 114607382 2.230000e-26 130.0
44 TraesCS7B01G037900 chr7D 86.239 109 15 0 381 489 351350716 351350824 4.830000e-23 119.0
45 TraesCS7B01G037900 chr7D 100.000 32 0 0 349 380 88078057 88078088 2.970000e-05 60.2
46 TraesCS7B01G037900 chr4A 78.082 219 37 10 768 980 742298666 742298879 8.020000e-26 128.0
47 TraesCS7B01G037900 chr4A 85.600 125 8 10 2144 2263 646924207 646924326 3.730000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G037900 chr7B 36965833 36968591 2758 False 5096.000 5096 100.00000 1 2759 1 chr7B.!!$F1 2758
1 TraesCS7B01G037900 chr1A 555512575 555514081 1506 False 2684.000 2684 98.80600 757 2263 1 chr1A.!!$F2 1506
2 TraesCS7B01G037900 chr1A 590250925 590251839 914 False 1450.000 1450 95.31100 1347 2260 1 chr1A.!!$F3 913
3 TraesCS7B01G037900 chr5A 407873085 407874589 1504 True 1938.000 1938 89.99300 757 2262 1 chr5A.!!$R1 1505
4 TraesCS7B01G037900 chr2B 348076598 348078075 1477 True 1834.000 1834 89.12600 783 2268 1 chr2B.!!$R1 1485
5 TraesCS7B01G037900 chr5D 230025029 230026896 1867 True 742.600 1661 96.07200 764 2271 3 chr5D.!!$R1 1507
6 TraesCS7B01G037900 chr3A 697628654 697629599 945 False 1495.000 1495 95.24300 1321 2262 1 chr3A.!!$F3 941
7 TraesCS7B01G037900 chr3A 679693266 679694267 1001 True 225.625 363 91.54175 381 2759 4 chr3A.!!$R1 2378
8 TraesCS7B01G037900 chr1D 53229007 53229848 841 False 200.125 486 94.21375 520 2759 4 chr1D.!!$F2 2239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.033894 GGGGTGGGGCGAATCTAAAA 60.034 55.0 0.0 0.0 0.0 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 2381 0.737367 CTTCAATGCGCGAGTGGAGA 60.737 55.0 12.1 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.699192 TGGCCTATCTAGCGGTGT 57.301 55.556 3.32 0.00 0.00 4.16
18 19 2.910579 TGGCCTATCTAGCGGTGTT 58.089 52.632 3.32 0.00 0.00 3.32
19 20 0.464036 TGGCCTATCTAGCGGTGTTG 59.536 55.000 3.32 0.00 0.00 3.33
20 21 0.249911 GGCCTATCTAGCGGTGTTGG 60.250 60.000 0.00 0.00 0.00 3.77
21 22 0.249911 GCCTATCTAGCGGTGTTGGG 60.250 60.000 0.00 0.00 0.00 4.12
22 23 0.249911 CCTATCTAGCGGTGTTGGGC 60.250 60.000 0.00 0.00 0.00 5.36
23 24 0.597637 CTATCTAGCGGTGTTGGGCG 60.598 60.000 0.00 0.00 0.00 6.13
24 25 2.023414 TATCTAGCGGTGTTGGGCGG 62.023 60.000 0.00 0.00 0.00 6.13
25 26 4.388499 CTAGCGGTGTTGGGCGGT 62.388 66.667 0.00 0.00 0.00 5.68
26 27 4.690719 TAGCGGTGTTGGGCGGTG 62.691 66.667 0.00 0.00 0.00 4.94
83 84 2.770904 GGGGGTGGGGCGAATCTA 60.771 66.667 0.00 0.00 0.00 1.98
84 85 2.380285 GGGGGTGGGGCGAATCTAA 61.380 63.158 0.00 0.00 0.00 2.10
85 86 1.610873 GGGGTGGGGCGAATCTAAA 59.389 57.895 0.00 0.00 0.00 1.85
86 87 0.033894 GGGGTGGGGCGAATCTAAAA 60.034 55.000 0.00 0.00 0.00 1.52
87 88 1.389555 GGGTGGGGCGAATCTAAAAG 58.610 55.000 0.00 0.00 0.00 2.27
88 89 1.064979 GGGTGGGGCGAATCTAAAAGA 60.065 52.381 0.00 0.00 0.00 2.52
89 90 2.422945 GGGTGGGGCGAATCTAAAAGAT 60.423 50.000 0.00 0.00 36.28 2.40
90 91 3.288092 GGTGGGGCGAATCTAAAAGATT 58.712 45.455 1.85 1.85 46.84 2.40
91 92 3.699538 GGTGGGGCGAATCTAAAAGATTT 59.300 43.478 3.80 0.00 44.41 2.17
92 93 4.202020 GGTGGGGCGAATCTAAAAGATTTC 60.202 45.833 3.80 0.49 44.41 2.17
93 94 3.951680 TGGGGCGAATCTAAAAGATTTCC 59.048 43.478 3.80 8.00 44.41 3.13
94 95 4.207955 GGGGCGAATCTAAAAGATTTCCT 58.792 43.478 15.39 0.00 44.41 3.36
95 96 4.645136 GGGGCGAATCTAAAAGATTTCCTT 59.355 41.667 15.39 0.00 44.41 3.36
96 97 5.450550 GGGGCGAATCTAAAAGATTTCCTTG 60.451 44.000 15.39 3.83 44.41 3.61
97 98 5.357032 GGGCGAATCTAAAAGATTTCCTTGA 59.643 40.000 15.39 0.00 44.41 3.02
98 99 6.258899 GGCGAATCTAAAAGATTTCCTTGAC 58.741 40.000 3.80 0.00 44.41 3.18
99 100 6.094186 GGCGAATCTAAAAGATTTCCTTGACT 59.906 38.462 3.80 0.00 44.41 3.41
100 101 7.362142 GGCGAATCTAAAAGATTTCCTTGACTT 60.362 37.037 3.80 0.00 44.41 3.01
101 102 8.023706 GCGAATCTAAAAGATTTCCTTGACTTT 58.976 33.333 3.80 0.00 44.41 2.66
102 103 9.899226 CGAATCTAAAAGATTTCCTTGACTTTT 57.101 29.630 0.00 0.00 44.41 2.27
104 105 9.899226 AATCTAAAAGATTTCCTTGACTTTTCG 57.101 29.630 0.00 0.00 41.90 3.46
105 106 7.360361 TCTAAAAGATTTCCTTGACTTTTCGC 58.640 34.615 0.00 0.00 41.01 4.70
106 107 4.505313 AAGATTTCCTTGACTTTTCGCC 57.495 40.909 0.00 0.00 32.92 5.54
107 108 3.756117 AGATTTCCTTGACTTTTCGCCT 58.244 40.909 0.00 0.00 0.00 5.52
108 109 3.503748 AGATTTCCTTGACTTTTCGCCTG 59.496 43.478 0.00 0.00 0.00 4.85
109 110 2.631160 TTCCTTGACTTTTCGCCTGA 57.369 45.000 0.00 0.00 0.00 3.86
110 111 1.878953 TCCTTGACTTTTCGCCTGAC 58.121 50.000 0.00 0.00 0.00 3.51
111 112 1.140052 TCCTTGACTTTTCGCCTGACA 59.860 47.619 0.00 0.00 0.00 3.58
112 113 1.532868 CCTTGACTTTTCGCCTGACAG 59.467 52.381 0.00 0.00 0.00 3.51
113 114 2.213499 CTTGACTTTTCGCCTGACAGT 58.787 47.619 0.93 0.00 0.00 3.55
114 115 1.581934 TGACTTTTCGCCTGACAGTG 58.418 50.000 0.93 0.00 0.00 3.66
115 116 1.134521 TGACTTTTCGCCTGACAGTGT 60.135 47.619 0.00 0.00 0.00 3.55
116 117 1.261619 GACTTTTCGCCTGACAGTGTG 59.738 52.381 0.00 0.23 0.00 3.82
117 118 0.588252 CTTTTCGCCTGACAGTGTGG 59.412 55.000 0.00 0.00 0.00 4.17
118 119 1.444119 TTTTCGCCTGACAGTGTGGC 61.444 55.000 13.41 13.41 42.94 5.01
119 120 3.825160 TTCGCCTGACAGTGTGGCC 62.825 63.158 16.71 0.00 43.42 5.36
121 122 4.269523 GCCTGACAGTGTGGCCCA 62.270 66.667 12.58 0.00 40.71 5.36
122 123 2.033141 CCTGACAGTGTGGCCCAG 59.967 66.667 0.00 1.11 0.00 4.45
123 124 2.033141 CTGACAGTGTGGCCCAGG 59.967 66.667 0.00 0.00 0.00 4.45
124 125 4.269523 TGACAGTGTGGCCCAGGC 62.270 66.667 0.00 0.00 41.06 4.85
130 131 4.514585 TGTGGCCCAGGCGTGTTT 62.515 61.111 0.00 0.00 43.06 2.83
131 132 3.223589 GTGGCCCAGGCGTGTTTT 61.224 61.111 0.00 0.00 43.06 2.43
132 133 2.443016 TGGCCCAGGCGTGTTTTT 60.443 55.556 0.00 0.00 43.06 1.94
133 134 2.338620 GGCCCAGGCGTGTTTTTC 59.661 61.111 5.57 0.00 43.06 2.29
134 135 2.338620 GCCCAGGCGTGTTTTTCC 59.661 61.111 5.57 0.00 0.00 3.13
135 136 3.047735 CCCAGGCGTGTTTTTCCC 58.952 61.111 5.57 0.00 0.00 3.97
136 137 1.530655 CCCAGGCGTGTTTTTCCCT 60.531 57.895 5.57 0.00 0.00 4.20
137 138 1.112916 CCCAGGCGTGTTTTTCCCTT 61.113 55.000 5.57 0.00 0.00 3.95
138 139 0.313987 CCAGGCGTGTTTTTCCCTTC 59.686 55.000 5.57 0.00 0.00 3.46
139 140 0.313987 CAGGCGTGTTTTTCCCTTCC 59.686 55.000 0.00 0.00 0.00 3.46
140 141 1.170290 AGGCGTGTTTTTCCCTTCCG 61.170 55.000 0.00 0.00 0.00 4.30
141 142 1.371267 GCGTGTTTTTCCCTTCCGC 60.371 57.895 0.00 0.00 0.00 5.54
142 143 1.284715 CGTGTTTTTCCCTTCCGCC 59.715 57.895 0.00 0.00 0.00 6.13
143 144 1.284715 GTGTTTTTCCCTTCCGCCG 59.715 57.895 0.00 0.00 0.00 6.46
144 145 1.899534 TGTTTTTCCCTTCCGCCGG 60.900 57.895 0.00 0.00 0.00 6.13
145 146 1.601477 GTTTTTCCCTTCCGCCGGA 60.601 57.895 5.05 0.00 0.00 5.14
146 147 1.302993 TTTTTCCCTTCCGCCGGAG 60.303 57.895 5.05 0.00 31.21 4.63
147 148 3.912745 TTTTCCCTTCCGCCGGAGC 62.913 63.158 5.05 0.00 31.21 4.70
152 153 4.521062 CTTCCGCCGGAGCTCCAG 62.521 72.222 31.67 22.52 36.60 3.86
167 168 3.114616 CAGAGCGCACTGGGTTCG 61.115 66.667 24.95 0.00 34.64 3.95
168 169 4.379243 AGAGCGCACTGGGTTCGG 62.379 66.667 11.47 0.00 31.74 4.30
172 173 4.077184 CGCACTGGGTTCGGGCTA 62.077 66.667 0.00 0.00 0.00 3.93
173 174 2.349755 GCACTGGGTTCGGGCTAA 59.650 61.111 0.00 0.00 0.00 3.09
174 175 1.745489 GCACTGGGTTCGGGCTAAG 60.745 63.158 0.00 0.00 0.00 2.18
175 176 1.980052 CACTGGGTTCGGGCTAAGA 59.020 57.895 0.00 0.00 0.00 2.10
176 177 0.541863 CACTGGGTTCGGGCTAAGAT 59.458 55.000 0.00 0.00 0.00 2.40
177 178 0.831307 ACTGGGTTCGGGCTAAGATC 59.169 55.000 0.00 0.00 0.00 2.75
178 179 0.249489 CTGGGTTCGGGCTAAGATCG 60.249 60.000 0.00 0.00 0.00 3.69
179 180 1.594564 GGGTTCGGGCTAAGATCGC 60.595 63.158 0.00 0.00 0.00 4.58
180 181 1.594564 GGTTCGGGCTAAGATCGCC 60.595 63.158 1.71 1.71 46.83 5.54
185 186 3.930012 GGCTAAGATCGCCGGGCT 61.930 66.667 18.34 0.00 37.87 5.19
186 187 2.571216 GGCTAAGATCGCCGGGCTA 61.571 63.158 18.34 6.57 37.87 3.93
187 188 1.366366 GCTAAGATCGCCGGGCTAA 59.634 57.895 18.34 5.36 0.00 3.09
188 189 0.249741 GCTAAGATCGCCGGGCTAAA 60.250 55.000 18.34 2.55 0.00 1.85
189 190 1.808891 GCTAAGATCGCCGGGCTAAAA 60.809 52.381 18.34 0.00 0.00 1.52
190 191 2.557317 CTAAGATCGCCGGGCTAAAAA 58.443 47.619 18.34 0.00 0.00 1.94
213 214 2.356553 CCGAGTCGGCGGTTTTCA 60.357 61.111 20.50 0.00 46.07 2.69
214 215 2.380410 CCGAGTCGGCGGTTTTCAG 61.380 63.158 20.50 0.00 46.07 3.02
215 216 2.861006 GAGTCGGCGGTTTTCAGC 59.139 61.111 7.21 0.00 40.15 4.26
217 218 3.343421 GTCGGCGGTTTTCAGCGT 61.343 61.111 7.21 0.00 45.98 5.07
218 219 3.039588 TCGGCGGTTTTCAGCGTC 61.040 61.111 7.21 0.00 45.98 5.19
219 220 3.041940 CGGCGGTTTTCAGCGTCT 61.042 61.111 0.00 0.00 46.44 4.18
220 221 2.604174 CGGCGGTTTTCAGCGTCTT 61.604 57.895 0.00 0.00 46.44 3.01
221 222 1.082104 GGCGGTTTTCAGCGTCTTG 60.082 57.895 0.00 0.00 45.17 3.02
222 223 1.503818 GGCGGTTTTCAGCGTCTTGA 61.504 55.000 0.00 0.00 45.17 3.02
223 224 0.110644 GCGGTTTTCAGCGTCTTGAG 60.111 55.000 0.00 0.00 45.98 3.02
224 225 1.497991 CGGTTTTCAGCGTCTTGAGA 58.502 50.000 0.00 0.00 39.15 3.27
225 226 1.457303 CGGTTTTCAGCGTCTTGAGAG 59.543 52.381 0.00 0.00 39.15 3.20
226 227 1.195674 GGTTTTCAGCGTCTTGAGAGC 59.804 52.381 0.00 0.00 0.00 4.09
227 228 1.867233 GTTTTCAGCGTCTTGAGAGCA 59.133 47.619 0.00 0.00 0.00 4.26
228 229 1.502231 TTTCAGCGTCTTGAGAGCAC 58.498 50.000 0.00 0.00 0.00 4.40
229 230 0.389025 TTCAGCGTCTTGAGAGCACA 59.611 50.000 0.00 0.00 0.00 4.57
230 231 0.389025 TCAGCGTCTTGAGAGCACAA 59.611 50.000 0.00 0.00 0.00 3.33
231 232 1.202521 TCAGCGTCTTGAGAGCACAAA 60.203 47.619 0.00 0.00 0.00 2.83
232 233 1.802960 CAGCGTCTTGAGAGCACAAAT 59.197 47.619 0.00 0.00 0.00 2.32
233 234 1.802960 AGCGTCTTGAGAGCACAAATG 59.197 47.619 0.00 0.00 0.00 2.32
234 235 1.800586 GCGTCTTGAGAGCACAAATGA 59.199 47.619 0.00 0.00 0.00 2.57
235 236 2.159734 GCGTCTTGAGAGCACAAATGAG 60.160 50.000 0.00 0.00 0.00 2.90
236 237 2.414481 CGTCTTGAGAGCACAAATGAGG 59.586 50.000 0.00 0.00 0.00 3.86
237 238 2.161211 GTCTTGAGAGCACAAATGAGGC 59.839 50.000 0.00 0.00 0.00 4.70
238 239 2.039480 TCTTGAGAGCACAAATGAGGCT 59.961 45.455 0.00 0.00 41.35 4.58
239 240 2.574006 TGAGAGCACAAATGAGGCTT 57.426 45.000 0.00 0.00 38.15 4.35
240 241 2.867624 TGAGAGCACAAATGAGGCTTT 58.132 42.857 0.00 1.57 38.15 3.51
241 242 3.225104 TGAGAGCACAAATGAGGCTTTT 58.775 40.909 0.00 0.00 38.15 2.27
242 243 3.638160 TGAGAGCACAAATGAGGCTTTTT 59.362 39.130 0.00 0.00 38.15 1.94
258 259 3.728474 TTTTTGGCGCCGACGTAA 58.272 50.000 23.90 8.75 42.83 3.18
259 260 2.020131 TTTTTGGCGCCGACGTAAA 58.980 47.368 23.90 14.85 42.83 2.01
260 261 0.379669 TTTTTGGCGCCGACGTAAAA 59.620 45.000 23.90 18.94 42.83 1.52
261 262 0.379669 TTTTGGCGCCGACGTAAAAA 59.620 45.000 23.90 18.20 42.83 1.94
278 279 1.632589 AAAAATCACCCTGGACCTGC 58.367 50.000 0.00 0.00 0.00 4.85
279 280 0.779997 AAAATCACCCTGGACCTGCT 59.220 50.000 0.00 0.00 0.00 4.24
280 281 1.668826 AAATCACCCTGGACCTGCTA 58.331 50.000 0.00 0.00 0.00 3.49
281 282 1.207791 AATCACCCTGGACCTGCTAG 58.792 55.000 0.00 0.00 0.00 3.42
282 283 0.692419 ATCACCCTGGACCTGCTAGG 60.692 60.000 0.00 1.16 44.45 3.02
285 286 2.368594 CCTGGACCTGCTAGGGGA 59.631 66.667 7.06 0.00 41.33 4.81
286 287 1.764054 CCTGGACCTGCTAGGGGAG 60.764 68.421 7.06 0.74 41.33 4.30
295 296 3.291383 CTAGGGGAGCGGCTCGAG 61.291 72.222 22.63 8.45 0.00 4.04
302 303 3.849064 AGCGGCTCGAGCTCTTAT 58.151 55.556 34.46 15.11 41.83 1.73
303 304 3.022940 AGCGGCTCGAGCTCTTATA 57.977 52.632 34.46 0.00 41.83 0.98
304 305 1.540267 AGCGGCTCGAGCTCTTATAT 58.460 50.000 34.46 12.73 41.83 0.86
305 306 1.470890 AGCGGCTCGAGCTCTTATATC 59.529 52.381 34.46 15.74 41.83 1.63
306 307 1.470890 GCGGCTCGAGCTCTTATATCT 59.529 52.381 34.46 0.00 41.70 1.98
307 308 2.730715 GCGGCTCGAGCTCTTATATCTG 60.731 54.545 34.46 10.96 41.70 2.90
308 309 2.159448 CGGCTCGAGCTCTTATATCTGG 60.159 54.545 34.46 7.19 41.70 3.86
309 310 3.085533 GGCTCGAGCTCTTATATCTGGA 58.914 50.000 34.46 0.00 41.70 3.86
310 311 3.699038 GGCTCGAGCTCTTATATCTGGAT 59.301 47.826 34.46 0.00 41.70 3.41
311 312 4.159506 GGCTCGAGCTCTTATATCTGGATT 59.840 45.833 34.46 0.00 41.70 3.01
312 313 5.101628 GCTCGAGCTCTTATATCTGGATTG 58.898 45.833 29.88 0.00 38.21 2.67
313 314 5.336372 GCTCGAGCTCTTATATCTGGATTGT 60.336 44.000 29.88 0.00 38.21 2.71
314 315 6.656632 TCGAGCTCTTATATCTGGATTGTT 57.343 37.500 12.85 0.00 0.00 2.83
315 316 7.575909 GCTCGAGCTCTTATATCTGGATTGTTA 60.576 40.741 29.88 0.00 38.21 2.41
316 317 8.178313 TCGAGCTCTTATATCTGGATTGTTAA 57.822 34.615 12.85 0.00 0.00 2.01
317 318 8.638873 TCGAGCTCTTATATCTGGATTGTTAAA 58.361 33.333 12.85 0.00 0.00 1.52
318 319 9.429359 CGAGCTCTTATATCTGGATTGTTAAAT 57.571 33.333 12.85 0.00 0.00 1.40
320 321 9.007901 AGCTCTTATATCTGGATTGTTAAATGC 57.992 33.333 0.00 0.00 34.86 3.56
321 322 7.959651 GCTCTTATATCTGGATTGTTAAATGCG 59.040 37.037 0.00 0.00 36.95 4.73
322 323 9.208022 CTCTTATATCTGGATTGTTAAATGCGA 57.792 33.333 0.00 0.00 36.95 5.10
323 324 9.554395 TCTTATATCTGGATTGTTAAATGCGAA 57.446 29.630 0.00 0.00 36.95 4.70
326 327 6.698008 ATCTGGATTGTTAAATGCGAATGA 57.302 33.333 0.00 0.00 36.95 2.57
327 328 6.507958 TCTGGATTGTTAAATGCGAATGAA 57.492 33.333 0.00 0.00 36.95 2.57
328 329 7.099266 TCTGGATTGTTAAATGCGAATGAAT 57.901 32.000 0.00 0.00 36.95 2.57
329 330 7.195646 TCTGGATTGTTAAATGCGAATGAATC 58.804 34.615 0.00 0.00 36.95 2.52
339 340 2.311294 GAATGAATCGACCCAGGCG 58.689 57.895 0.00 0.00 0.00 5.52
340 341 0.179084 GAATGAATCGACCCAGGCGA 60.179 55.000 0.00 0.00 42.48 5.54
341 342 0.251916 AATGAATCGACCCAGGCGAA 59.748 50.000 0.00 0.00 41.52 4.70
342 343 0.179073 ATGAATCGACCCAGGCGAAG 60.179 55.000 0.00 0.00 41.52 3.79
343 344 1.521681 GAATCGACCCAGGCGAAGG 60.522 63.158 0.00 0.00 41.52 3.46
370 371 4.288670 CGCAGGAGTAGAGAATAAACGA 57.711 45.455 0.00 0.00 0.00 3.85
371 372 4.669318 CGCAGGAGTAGAGAATAAACGAA 58.331 43.478 0.00 0.00 0.00 3.85
372 373 5.100259 CGCAGGAGTAGAGAATAAACGAAA 58.900 41.667 0.00 0.00 0.00 3.46
373 374 5.575606 CGCAGGAGTAGAGAATAAACGAAAA 59.424 40.000 0.00 0.00 0.00 2.29
374 375 6.090358 CGCAGGAGTAGAGAATAAACGAAAAA 59.910 38.462 0.00 0.00 0.00 1.94
375 376 7.201530 CGCAGGAGTAGAGAATAAACGAAAAAT 60.202 37.037 0.00 0.00 0.00 1.82
376 377 9.095065 GCAGGAGTAGAGAATAAACGAAAAATA 57.905 33.333 0.00 0.00 0.00 1.40
402 403 7.393796 AGTGGAGGTAATATTATCGGTAGTCAG 59.606 40.741 0.00 0.00 0.00 3.51
404 405 7.610692 TGGAGGTAATATTATCGGTAGTCAGAG 59.389 40.741 0.00 0.00 0.00 3.35
411 412 3.512033 ATCGGTAGTCAGAGAACTTGC 57.488 47.619 0.00 0.00 0.00 4.01
412 413 2.515854 TCGGTAGTCAGAGAACTTGCT 58.484 47.619 0.00 0.00 0.00 3.91
413 414 2.891580 TCGGTAGTCAGAGAACTTGCTT 59.108 45.455 0.00 0.00 0.00 3.91
415 416 3.675698 CGGTAGTCAGAGAACTTGCTTTC 59.324 47.826 0.00 0.00 0.00 2.62
422 423 4.816385 TCAGAGAACTTGCTTTCGATGTTT 59.184 37.500 0.00 0.00 0.00 2.83
424 425 6.650807 TCAGAGAACTTGCTTTCGATGTTTAT 59.349 34.615 0.00 0.00 0.00 1.40
428 429 9.607285 GAGAACTTGCTTTCGATGTTTATTTTA 57.393 29.630 0.00 0.00 0.00 1.52
432 433 7.326063 ACTTGCTTTCGATGTTTATTTTAGTGC 59.674 33.333 0.00 0.00 0.00 4.40
478 479 2.548057 TGGTCATTCAACTTGCGTTCTC 59.452 45.455 0.00 0.00 0.00 2.87
490 491 0.247145 GCGTTCTCGTGCAAATACGG 60.247 55.000 0.00 0.00 43.85 4.02
493 494 0.668096 TTCTCGTGCAAATACGGCGT 60.668 50.000 19.64 19.64 43.85 5.68
494 495 0.668096 TCTCGTGCAAATACGGCGTT 60.668 50.000 21.24 2.93 43.85 4.84
495 496 0.165079 CTCGTGCAAATACGGCGTTT 59.835 50.000 21.24 7.76 43.85 3.60
496 497 0.164217 TCGTGCAAATACGGCGTTTC 59.836 50.000 21.24 3.76 43.85 2.78
497 498 0.791610 CGTGCAAATACGGCGTTTCC 60.792 55.000 21.24 0.00 40.22 3.13
498 499 0.519961 GTGCAAATACGGCGTTTCCT 59.480 50.000 21.24 0.00 0.00 3.36
499 500 1.733360 GTGCAAATACGGCGTTTCCTA 59.267 47.619 21.24 0.00 0.00 2.94
500 501 2.160022 GTGCAAATACGGCGTTTCCTAA 59.840 45.455 21.24 0.00 0.00 2.69
501 502 3.011119 TGCAAATACGGCGTTTCCTAAT 58.989 40.909 21.24 0.15 0.00 1.73
508 509 1.669265 CGGCGTTTCCTAATTTCCTCC 59.331 52.381 0.00 0.00 0.00 4.30
510 511 1.669265 GCGTTTCCTAATTTCCTCCCG 59.331 52.381 0.00 0.00 0.00 5.14
531 532 0.622665 ATCCAGCCATATAGCCTGCC 59.377 55.000 0.00 0.00 0.00 4.85
574 577 1.150536 GGCCCACCTGTCAAAGTCA 59.849 57.895 0.00 0.00 0.00 3.41
638 641 3.926058 TTAAGGGTGAGGCCACTAATC 57.074 47.619 5.01 0.00 42.77 1.75
639 642 1.668826 AAGGGTGAGGCCACTAATCA 58.331 50.000 5.01 0.00 42.77 2.57
640 643 1.207791 AGGGTGAGGCCACTAATCAG 58.792 55.000 5.01 0.00 42.77 2.90
642 645 2.116238 GGGTGAGGCCACTAATCAGTA 58.884 52.381 5.01 0.00 42.77 2.74
643 646 2.103263 GGGTGAGGCCACTAATCAGTAG 59.897 54.545 5.01 0.00 42.77 2.57
644 647 2.103263 GGTGAGGCCACTAATCAGTAGG 59.897 54.545 5.01 0.00 42.77 3.18
648 651 4.101585 TGAGGCCACTAATCAGTAGGATTG 59.898 45.833 5.01 0.00 45.70 2.67
649 652 4.040755 AGGCCACTAATCAGTAGGATTGT 58.959 43.478 5.01 0.00 45.70 2.71
650 653 4.101741 AGGCCACTAATCAGTAGGATTGTC 59.898 45.833 5.01 0.00 45.70 3.18
651 654 4.101741 GGCCACTAATCAGTAGGATTGTCT 59.898 45.833 0.00 0.00 45.70 3.41
652 655 5.293560 GCCACTAATCAGTAGGATTGTCTC 58.706 45.833 0.00 0.00 45.70 3.36
653 656 5.163405 GCCACTAATCAGTAGGATTGTCTCA 60.163 44.000 0.00 0.00 45.70 3.27
699 702 4.650972 AACAACAGGTTAGGCTAATCCA 57.349 40.909 13.82 0.00 38.15 3.41
700 703 3.951663 ACAACAGGTTAGGCTAATCCAC 58.048 45.455 13.82 0.00 37.29 4.02
701 704 3.329520 ACAACAGGTTAGGCTAATCCACA 59.670 43.478 13.82 0.00 37.29 4.17
702 705 4.018415 ACAACAGGTTAGGCTAATCCACAT 60.018 41.667 13.82 0.00 37.29 3.21
703 706 5.190925 ACAACAGGTTAGGCTAATCCACATA 59.809 40.000 13.82 0.00 37.29 2.29
704 707 6.126478 ACAACAGGTTAGGCTAATCCACATAT 60.126 38.462 13.82 0.00 37.29 1.78
705 708 5.869579 ACAGGTTAGGCTAATCCACATATG 58.130 41.667 13.82 7.20 37.29 1.78
707 710 4.010349 GGTTAGGCTAATCCACATATGGC 58.990 47.826 10.65 0.00 46.80 4.40
708 711 2.887151 AGGCTAATCCACATATGGCC 57.113 50.000 7.80 8.14 46.80 5.36
709 712 1.355720 AGGCTAATCCACATATGGCCC 59.644 52.381 7.80 0.00 46.80 5.80
710 713 1.075374 GGCTAATCCACATATGGCCCA 59.925 52.381 7.80 0.00 46.80 5.36
711 714 2.291800 GGCTAATCCACATATGGCCCAT 60.292 50.000 7.80 0.00 46.80 4.00
712 715 3.019564 GCTAATCCACATATGGCCCATC 58.980 50.000 0.00 0.00 46.80 3.51
713 716 3.308688 GCTAATCCACATATGGCCCATCT 60.309 47.826 0.00 0.00 46.80 2.90
714 717 4.080356 GCTAATCCACATATGGCCCATCTA 60.080 45.833 0.00 0.00 46.80 1.98
715 718 5.398353 GCTAATCCACATATGGCCCATCTAT 60.398 44.000 0.00 0.00 46.80 1.98
716 719 4.785346 ATCCACATATGGCCCATCTATC 57.215 45.455 0.00 0.00 46.80 2.08
717 720 3.530017 TCCACATATGGCCCATCTATCA 58.470 45.455 0.00 0.00 46.80 2.15
718 721 3.520721 TCCACATATGGCCCATCTATCAG 59.479 47.826 0.00 0.00 46.80 2.90
719 722 3.265221 CCACATATGGCCCATCTATCAGT 59.735 47.826 0.00 0.00 39.82 3.41
720 723 4.259356 CACATATGGCCCATCTATCAGTG 58.741 47.826 0.00 0.00 0.00 3.66
721 724 3.265221 ACATATGGCCCATCTATCAGTGG 59.735 47.826 0.00 0.00 35.22 4.00
728 731 3.199880 CCATCTATCAGTGGGTCAACC 57.800 52.381 0.00 0.00 40.81 3.77
737 740 2.938301 TGGGTCAACCAGGAGTTCA 58.062 52.632 0.89 0.00 46.80 3.18
738 741 1.444933 TGGGTCAACCAGGAGTTCAT 58.555 50.000 0.89 0.00 46.80 2.57
739 742 2.626785 TGGGTCAACCAGGAGTTCATA 58.373 47.619 0.89 0.00 46.80 2.15
740 743 2.983192 TGGGTCAACCAGGAGTTCATAA 59.017 45.455 0.89 0.00 46.80 1.90
741 744 3.244770 TGGGTCAACCAGGAGTTCATAAC 60.245 47.826 0.89 0.00 46.80 1.89
742 745 3.344515 GGTCAACCAGGAGTTCATAACC 58.655 50.000 0.00 0.00 36.18 2.85
743 746 3.009143 GGTCAACCAGGAGTTCATAACCT 59.991 47.826 0.00 0.00 36.18 3.50
751 754 5.669164 AGGAGTTCATAACCTGAAGACTC 57.331 43.478 0.00 0.00 44.44 3.36
752 755 4.158764 AGGAGTTCATAACCTGAAGACTCG 59.841 45.833 0.00 0.00 44.44 4.18
753 756 4.158025 GGAGTTCATAACCTGAAGACTCGA 59.842 45.833 0.00 0.00 44.44 4.04
754 757 5.061920 AGTTCATAACCTGAAGACTCGAC 57.938 43.478 0.00 0.00 44.44 4.20
755 758 3.759527 TCATAACCTGAAGACTCGACG 57.240 47.619 0.00 0.00 0.00 5.12
994 997 3.213402 CGGTGTTGGTTTGGCGGT 61.213 61.111 0.00 0.00 0.00 5.68
1518 1890 2.166254 CCTGTCTTGTGGCTGTTTGTTT 59.834 45.455 0.00 0.00 0.00 2.83
2009 2381 2.237392 GCTCTCTGTCAGGGTTATGGTT 59.763 50.000 0.00 0.00 0.00 3.67
2388 2792 4.969359 AGTACCTGTTAGGGCATCTACAAT 59.031 41.667 0.00 0.00 40.58 2.71
2428 2832 2.356330 CGCCAGGGTTAAATTCCAGGTA 60.356 50.000 0.00 0.00 0.00 3.08
2429 2833 3.288092 GCCAGGGTTAAATTCCAGGTAG 58.712 50.000 0.00 0.00 0.00 3.18
2430 2834 3.308904 GCCAGGGTTAAATTCCAGGTAGT 60.309 47.826 0.00 0.00 0.00 2.73
2431 2835 4.813133 GCCAGGGTTAAATTCCAGGTAGTT 60.813 45.833 0.00 0.00 0.00 2.24
2432 2836 5.330233 CCAGGGTTAAATTCCAGGTAGTTT 58.670 41.667 0.00 0.00 0.00 2.66
2433 2837 5.778241 CCAGGGTTAAATTCCAGGTAGTTTT 59.222 40.000 0.00 0.00 0.00 2.43
2434 2838 6.949463 CCAGGGTTAAATTCCAGGTAGTTTTA 59.051 38.462 0.00 0.00 0.00 1.52
2435 2839 7.618117 CCAGGGTTAAATTCCAGGTAGTTTTAT 59.382 37.037 0.00 0.00 0.00 1.40
2436 2840 9.031537 CAGGGTTAAATTCCAGGTAGTTTTATT 57.968 33.333 0.00 0.00 0.00 1.40
2437 2841 9.610104 AGGGTTAAATTCCAGGTAGTTTTATTT 57.390 29.630 0.00 0.00 0.00 1.40
2497 2901 1.220169 CTGAATCCAGGATGAGCGCG 61.220 60.000 1.44 0.00 39.69 6.86
2498 2902 2.590007 AATCCAGGATGAGCGCGC 60.590 61.111 26.66 26.66 39.69 6.86
2568 2972 6.514012 AATCCAACCATCCATGTGTATAGA 57.486 37.500 0.00 0.00 0.00 1.98
2575 2979 5.590259 ACCATCCATGTGTATAGAAAAGTGC 59.410 40.000 0.00 0.00 0.00 4.40
2684 3088 1.268539 CGATGCAAAAATAGTCCCCGC 60.269 52.381 0.00 0.00 0.00 6.13
2748 3152 6.046593 TCTTTTTCTTCAACTTCGTCTAGCA 58.953 36.000 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.464036 CAACACCGCTAGATAGGCCA 59.536 55.000 5.01 0.00 0.00 5.36
1 2 0.249911 CCAACACCGCTAGATAGGCC 60.250 60.000 0.00 0.00 0.00 5.19
2 3 0.249911 CCCAACACCGCTAGATAGGC 60.250 60.000 0.00 0.00 0.00 3.93
5 6 1.440060 CGCCCAACACCGCTAGATA 59.560 57.895 0.00 0.00 0.00 1.98
6 7 2.186903 CGCCCAACACCGCTAGAT 59.813 61.111 0.00 0.00 0.00 1.98
7 8 4.077184 CCGCCCAACACCGCTAGA 62.077 66.667 0.00 0.00 0.00 2.43
8 9 4.388499 ACCGCCCAACACCGCTAG 62.388 66.667 0.00 0.00 0.00 3.42
9 10 4.690719 CACCGCCCAACACCGCTA 62.691 66.667 0.00 0.00 0.00 4.26
66 67 1.928714 TTTAGATTCGCCCCACCCCC 61.929 60.000 0.00 0.00 0.00 5.40
67 68 0.033894 TTTTAGATTCGCCCCACCCC 60.034 55.000 0.00 0.00 0.00 4.95
68 69 1.064979 TCTTTTAGATTCGCCCCACCC 60.065 52.381 0.00 0.00 0.00 4.61
69 70 2.413310 TCTTTTAGATTCGCCCCACC 57.587 50.000 0.00 0.00 0.00 4.61
70 71 4.202020 GGAAATCTTTTAGATTCGCCCCAC 60.202 45.833 2.65 0.00 43.67 4.61
71 72 3.951680 GGAAATCTTTTAGATTCGCCCCA 59.048 43.478 2.65 0.00 43.67 4.96
72 73 4.207955 AGGAAATCTTTTAGATTCGCCCC 58.792 43.478 13.34 8.57 43.67 5.80
73 74 5.357032 TCAAGGAAATCTTTTAGATTCGCCC 59.643 40.000 13.34 10.22 43.67 6.13
74 75 6.094186 AGTCAAGGAAATCTTTTAGATTCGCC 59.906 38.462 2.65 7.49 43.67 5.54
75 76 7.078011 AGTCAAGGAAATCTTTTAGATTCGC 57.922 36.000 2.65 0.00 43.67 4.70
76 77 9.899226 AAAAGTCAAGGAAATCTTTTAGATTCG 57.101 29.630 2.65 0.00 43.67 3.34
78 79 9.899226 CGAAAAGTCAAGGAAATCTTTTAGATT 57.101 29.630 0.00 0.00 46.22 2.40
79 80 8.023706 GCGAAAAGTCAAGGAAATCTTTTAGAT 58.976 33.333 11.32 0.00 39.27 1.98
80 81 7.360361 GCGAAAAGTCAAGGAAATCTTTTAGA 58.640 34.615 11.32 0.00 39.27 2.10
81 82 6.582672 GGCGAAAAGTCAAGGAAATCTTTTAG 59.417 38.462 0.00 0.00 39.27 1.85
82 83 6.264518 AGGCGAAAAGTCAAGGAAATCTTTTA 59.735 34.615 0.00 0.00 39.27 1.52
83 84 5.069119 AGGCGAAAAGTCAAGGAAATCTTTT 59.931 36.000 0.00 0.00 40.99 2.27
84 85 4.584743 AGGCGAAAAGTCAAGGAAATCTTT 59.415 37.500 0.00 0.00 32.41 2.52
85 86 4.022849 CAGGCGAAAAGTCAAGGAAATCTT 60.023 41.667 0.00 0.00 35.79 2.40
86 87 3.503748 CAGGCGAAAAGTCAAGGAAATCT 59.496 43.478 0.00 0.00 0.00 2.40
87 88 3.502211 TCAGGCGAAAAGTCAAGGAAATC 59.498 43.478 0.00 0.00 0.00 2.17
88 89 3.253432 GTCAGGCGAAAAGTCAAGGAAAT 59.747 43.478 0.00 0.00 0.00 2.17
89 90 2.616842 GTCAGGCGAAAAGTCAAGGAAA 59.383 45.455 0.00 0.00 0.00 3.13
90 91 2.218603 GTCAGGCGAAAAGTCAAGGAA 58.781 47.619 0.00 0.00 0.00 3.36
91 92 1.140052 TGTCAGGCGAAAAGTCAAGGA 59.860 47.619 0.00 0.00 0.00 3.36
92 93 1.532868 CTGTCAGGCGAAAAGTCAAGG 59.467 52.381 0.00 0.00 0.00 3.61
93 94 2.032549 CACTGTCAGGCGAAAAGTCAAG 60.033 50.000 4.53 0.00 0.00 3.02
94 95 1.939934 CACTGTCAGGCGAAAAGTCAA 59.060 47.619 4.53 0.00 0.00 3.18
95 96 1.134521 ACACTGTCAGGCGAAAAGTCA 60.135 47.619 4.53 0.00 0.00 3.41
96 97 1.261619 CACACTGTCAGGCGAAAAGTC 59.738 52.381 4.53 0.00 0.00 3.01
97 98 1.299541 CACACTGTCAGGCGAAAAGT 58.700 50.000 4.53 0.00 0.00 2.66
98 99 0.588252 CCACACTGTCAGGCGAAAAG 59.412 55.000 4.53 0.00 0.00 2.27
99 100 1.444119 GCCACACTGTCAGGCGAAAA 61.444 55.000 4.53 0.00 38.86 2.29
100 101 1.891919 GCCACACTGTCAGGCGAAA 60.892 57.895 4.53 0.00 38.86 3.46
101 102 2.280797 GCCACACTGTCAGGCGAA 60.281 61.111 4.53 0.00 38.86 4.70
105 106 2.033141 CTGGGCCACACTGTCAGG 59.967 66.667 0.00 0.00 0.00 3.86
106 107 2.033141 CCTGGGCCACACTGTCAG 59.967 66.667 0.00 0.00 0.00 3.51
107 108 4.269523 GCCTGGGCCACACTGTCA 62.270 66.667 0.00 0.00 34.56 3.58
113 114 4.514585 AAACACGCCTGGGCCACA 62.515 61.111 0.00 0.00 37.98 4.17
114 115 2.693250 GAAAAACACGCCTGGGCCAC 62.693 60.000 0.00 0.00 37.98 5.01
115 116 2.443016 AAAAACACGCCTGGGCCA 60.443 55.556 5.85 5.85 37.98 5.36
116 117 2.338620 GAAAAACACGCCTGGGCC 59.661 61.111 5.99 0.00 37.98 5.80
117 118 2.338620 GGAAAAACACGCCTGGGC 59.661 61.111 0.82 0.82 37.85 5.36
118 119 1.112916 AAGGGAAAAACACGCCTGGG 61.113 55.000 0.00 0.00 0.00 4.45
119 120 0.313987 GAAGGGAAAAACACGCCTGG 59.686 55.000 0.00 0.00 0.00 4.45
120 121 0.313987 GGAAGGGAAAAACACGCCTG 59.686 55.000 0.00 0.00 0.00 4.85
121 122 1.170290 CGGAAGGGAAAAACACGCCT 61.170 55.000 0.00 0.00 0.00 5.52
122 123 1.284715 CGGAAGGGAAAAACACGCC 59.715 57.895 0.00 0.00 0.00 5.68
123 124 1.371267 GCGGAAGGGAAAAACACGC 60.371 57.895 0.00 0.00 38.70 5.34
124 125 1.284715 GGCGGAAGGGAAAAACACG 59.715 57.895 0.00 0.00 0.00 4.49
125 126 1.284715 CGGCGGAAGGGAAAAACAC 59.715 57.895 0.00 0.00 0.00 3.32
126 127 1.899534 CCGGCGGAAGGGAAAAACA 60.900 57.895 24.41 0.00 0.00 2.83
127 128 1.583495 CTCCGGCGGAAGGGAAAAAC 61.583 60.000 30.59 0.00 0.00 2.43
128 129 1.302993 CTCCGGCGGAAGGGAAAAA 60.303 57.895 30.59 3.78 0.00 1.94
129 130 2.349755 CTCCGGCGGAAGGGAAAA 59.650 61.111 30.59 4.61 0.00 2.29
130 131 4.404098 GCTCCGGCGGAAGGGAAA 62.404 66.667 30.59 5.46 0.00 3.13
135 136 4.521062 CTGGAGCTCCGGCGGAAG 62.521 72.222 30.59 23.02 44.37 3.46
150 151 3.114616 CGAACCCAGTGCGCTCTG 61.115 66.667 28.06 28.06 35.45 3.35
151 152 4.379243 CCGAACCCAGTGCGCTCT 62.379 66.667 9.73 7.80 32.47 4.09
155 156 3.599285 TTAGCCCGAACCCAGTGCG 62.599 63.158 0.00 0.00 33.82 5.34
156 157 1.745489 CTTAGCCCGAACCCAGTGC 60.745 63.158 0.00 0.00 0.00 4.40
157 158 0.541863 ATCTTAGCCCGAACCCAGTG 59.458 55.000 0.00 0.00 0.00 3.66
158 159 0.831307 GATCTTAGCCCGAACCCAGT 59.169 55.000 0.00 0.00 0.00 4.00
159 160 0.249489 CGATCTTAGCCCGAACCCAG 60.249 60.000 0.00 0.00 0.00 4.45
160 161 1.820581 CGATCTTAGCCCGAACCCA 59.179 57.895 0.00 0.00 0.00 4.51
161 162 1.594564 GCGATCTTAGCCCGAACCC 60.595 63.158 0.00 0.00 0.00 4.11
162 163 4.029287 GCGATCTTAGCCCGAACC 57.971 61.111 0.00 0.00 0.00 3.62
169 170 0.249741 TTTAGCCCGGCGATCTTAGC 60.250 55.000 9.30 0.82 0.00 3.09
170 171 2.234300 TTTTAGCCCGGCGATCTTAG 57.766 50.000 9.30 0.00 0.00 2.18
171 172 2.695127 TTTTTAGCCCGGCGATCTTA 57.305 45.000 9.30 0.00 0.00 2.10
172 173 3.562397 TTTTTAGCCCGGCGATCTT 57.438 47.368 9.30 0.00 0.00 2.40
197 198 3.011760 GCTGAAAACCGCCGACTCG 62.012 63.158 0.00 0.00 0.00 4.18
198 199 2.861006 GCTGAAAACCGCCGACTC 59.139 61.111 0.00 0.00 0.00 3.36
199 200 3.041940 CGCTGAAAACCGCCGACT 61.042 61.111 0.00 0.00 0.00 4.18
200 201 3.291167 GACGCTGAAAACCGCCGAC 62.291 63.158 0.00 0.00 0.00 4.79
201 202 2.981977 AAGACGCTGAAAACCGCCGA 62.982 55.000 0.00 0.00 0.00 5.54
202 203 2.604174 AAGACGCTGAAAACCGCCG 61.604 57.895 0.00 0.00 0.00 6.46
203 204 1.082104 CAAGACGCTGAAAACCGCC 60.082 57.895 0.00 0.00 0.00 6.13
204 205 0.110644 CTCAAGACGCTGAAAACCGC 60.111 55.000 0.00 0.00 0.00 5.68
205 206 1.457303 CTCTCAAGACGCTGAAAACCG 59.543 52.381 0.00 0.00 0.00 4.44
206 207 1.195674 GCTCTCAAGACGCTGAAAACC 59.804 52.381 0.00 0.00 0.00 3.27
207 208 1.867233 TGCTCTCAAGACGCTGAAAAC 59.133 47.619 0.00 0.00 0.00 2.43
208 209 1.867233 GTGCTCTCAAGACGCTGAAAA 59.133 47.619 0.00 0.00 0.00 2.29
209 210 1.202521 TGTGCTCTCAAGACGCTGAAA 60.203 47.619 0.00 0.00 0.00 2.69
210 211 0.389025 TGTGCTCTCAAGACGCTGAA 59.611 50.000 0.00 0.00 0.00 3.02
211 212 0.389025 TTGTGCTCTCAAGACGCTGA 59.611 50.000 0.00 0.00 0.00 4.26
212 213 1.220529 TTTGTGCTCTCAAGACGCTG 58.779 50.000 0.00 0.00 0.00 5.18
213 214 1.802960 CATTTGTGCTCTCAAGACGCT 59.197 47.619 0.00 0.00 0.00 5.07
214 215 1.800586 TCATTTGTGCTCTCAAGACGC 59.199 47.619 0.00 0.00 0.00 5.19
215 216 2.414481 CCTCATTTGTGCTCTCAAGACG 59.586 50.000 0.00 0.00 0.00 4.18
216 217 2.161211 GCCTCATTTGTGCTCTCAAGAC 59.839 50.000 0.00 0.00 0.00 3.01
217 218 2.039480 AGCCTCATTTGTGCTCTCAAGA 59.961 45.455 0.00 0.00 0.00 3.02
218 219 2.434428 AGCCTCATTTGTGCTCTCAAG 58.566 47.619 0.00 0.00 0.00 3.02
219 220 2.574006 AGCCTCATTTGTGCTCTCAA 57.426 45.000 0.00 0.00 0.00 3.02
220 221 2.574006 AAGCCTCATTTGTGCTCTCA 57.426 45.000 0.00 0.00 33.36 3.27
221 222 3.930634 AAAAGCCTCATTTGTGCTCTC 57.069 42.857 0.00 0.00 33.36 3.20
241 242 0.379669 TTTTACGTCGGCGCCAAAAA 59.620 45.000 28.98 19.40 42.83 1.94
242 243 0.379669 TTTTTACGTCGGCGCCAAAA 59.620 45.000 28.98 21.18 42.83 2.44
243 244 2.020131 TTTTTACGTCGGCGCCAAA 58.980 47.368 28.98 16.15 42.83 3.28
244 245 3.728474 TTTTTACGTCGGCGCCAA 58.272 50.000 28.98 4.39 42.83 4.52
259 260 1.147817 AGCAGGTCCAGGGTGATTTTT 59.852 47.619 0.00 0.00 0.00 1.94
260 261 0.779997 AGCAGGTCCAGGGTGATTTT 59.220 50.000 0.00 0.00 0.00 1.82
261 262 1.561542 CTAGCAGGTCCAGGGTGATTT 59.438 52.381 0.00 0.00 0.00 2.17
262 263 1.207791 CTAGCAGGTCCAGGGTGATT 58.792 55.000 0.00 0.00 0.00 2.57
263 264 0.692419 CCTAGCAGGTCCAGGGTGAT 60.692 60.000 0.00 0.00 0.00 3.06
264 265 1.306141 CCTAGCAGGTCCAGGGTGA 60.306 63.158 0.00 0.00 0.00 4.02
265 266 2.370445 CCCTAGCAGGTCCAGGGTG 61.370 68.421 4.11 0.00 43.58 4.61
266 267 2.041265 CCCTAGCAGGTCCAGGGT 59.959 66.667 4.11 0.00 43.58 4.34
268 269 1.764054 CTCCCCTAGCAGGTCCAGG 60.764 68.421 0.00 0.00 31.93 4.45
269 270 3.962557 CTCCCCTAGCAGGTCCAG 58.037 66.667 0.00 0.00 31.93 3.86
278 279 3.291383 CTCGAGCCGCTCCCCTAG 61.291 72.222 14.85 3.89 0.00 3.02
285 286 1.470890 GATATAAGAGCTCGAGCCGCT 59.529 52.381 32.94 26.34 43.38 5.52
286 287 1.470890 AGATATAAGAGCTCGAGCCGC 59.529 52.381 32.94 24.55 43.38 6.53
287 288 2.159448 CCAGATATAAGAGCTCGAGCCG 60.159 54.545 32.94 11.23 43.38 5.52
288 289 3.085533 TCCAGATATAAGAGCTCGAGCC 58.914 50.000 32.94 23.39 43.38 4.70
289 290 4.981806 ATCCAGATATAAGAGCTCGAGC 57.018 45.455 30.01 30.01 42.49 5.03
290 291 6.266168 ACAATCCAGATATAAGAGCTCGAG 57.734 41.667 8.45 8.45 0.00 4.04
291 292 6.656632 AACAATCCAGATATAAGAGCTCGA 57.343 37.500 8.37 0.23 0.00 4.04
292 293 8.818141 TTTAACAATCCAGATATAAGAGCTCG 57.182 34.615 8.37 0.00 0.00 5.03
294 295 9.007901 GCATTTAACAATCCAGATATAAGAGCT 57.992 33.333 0.00 0.00 0.00 4.09
295 296 7.959651 CGCATTTAACAATCCAGATATAAGAGC 59.040 37.037 0.00 0.00 0.00 4.09
296 297 9.208022 TCGCATTTAACAATCCAGATATAAGAG 57.792 33.333 0.00 0.00 0.00 2.85
297 298 9.554395 TTCGCATTTAACAATCCAGATATAAGA 57.446 29.630 0.00 0.00 0.00 2.10
300 301 9.500785 TCATTCGCATTTAACAATCCAGATATA 57.499 29.630 0.00 0.00 0.00 0.86
301 302 8.394971 TCATTCGCATTTAACAATCCAGATAT 57.605 30.769 0.00 0.00 0.00 1.63
302 303 7.800155 TCATTCGCATTTAACAATCCAGATA 57.200 32.000 0.00 0.00 0.00 1.98
303 304 6.698008 TCATTCGCATTTAACAATCCAGAT 57.302 33.333 0.00 0.00 0.00 2.90
304 305 6.507958 TTCATTCGCATTTAACAATCCAGA 57.492 33.333 0.00 0.00 0.00 3.86
305 306 6.141211 CGATTCATTCGCATTTAACAATCCAG 59.859 38.462 0.00 0.00 41.69 3.86
306 307 5.970612 CGATTCATTCGCATTTAACAATCCA 59.029 36.000 0.00 0.00 41.69 3.41
307 308 6.424557 CGATTCATTCGCATTTAACAATCC 57.575 37.500 0.00 0.00 41.69 3.01
321 322 0.179084 TCGCCTGGGTCGATTCATTC 60.179 55.000 0.00 0.00 0.00 2.67
322 323 0.251916 TTCGCCTGGGTCGATTCATT 59.748 50.000 0.00 0.00 35.75 2.57
323 324 0.179073 CTTCGCCTGGGTCGATTCAT 60.179 55.000 0.00 0.00 35.75 2.57
324 325 1.218047 CTTCGCCTGGGTCGATTCA 59.782 57.895 0.00 0.00 35.75 2.57
325 326 1.521681 CCTTCGCCTGGGTCGATTC 60.522 63.158 0.00 0.00 35.75 2.52
326 327 2.584608 CCTTCGCCTGGGTCGATT 59.415 61.111 0.00 0.00 35.75 3.34
327 328 3.470888 CCCTTCGCCTGGGTCGAT 61.471 66.667 0.00 0.00 39.82 3.59
344 345 1.760192 TTCTCTACTCCTGCGGGTAC 58.240 55.000 12.43 0.00 0.00 3.34
345 346 2.750141 ATTCTCTACTCCTGCGGGTA 57.250 50.000 12.43 0.00 0.00 3.69
346 347 2.750141 TATTCTCTACTCCTGCGGGT 57.250 50.000 12.43 0.00 0.00 5.28
347 348 3.718815 GTTTATTCTCTACTCCTGCGGG 58.281 50.000 4.71 4.71 0.00 6.13
348 349 3.066342 TCGTTTATTCTCTACTCCTGCGG 59.934 47.826 0.00 0.00 0.00 5.69
349 350 4.288670 TCGTTTATTCTCTACTCCTGCG 57.711 45.455 0.00 0.00 0.00 5.18
350 351 6.963049 TTTTCGTTTATTCTCTACTCCTGC 57.037 37.500 0.00 0.00 0.00 4.85
357 358 9.595823 CCTCCACTATTTTTCGTTTATTCTCTA 57.404 33.333 0.00 0.00 0.00 2.43
358 359 8.101419 ACCTCCACTATTTTTCGTTTATTCTCT 58.899 33.333 0.00 0.00 0.00 3.10
359 360 8.265165 ACCTCCACTATTTTTCGTTTATTCTC 57.735 34.615 0.00 0.00 0.00 2.87
360 361 9.729281 TTACCTCCACTATTTTTCGTTTATTCT 57.271 29.630 0.00 0.00 0.00 2.40
373 374 9.765295 ACTACCGATAATATTACCTCCACTATT 57.235 33.333 0.00 0.00 0.00 1.73
374 375 9.406113 GACTACCGATAATATTACCTCCACTAT 57.594 37.037 0.00 0.00 0.00 2.12
375 376 8.385491 TGACTACCGATAATATTACCTCCACTA 58.615 37.037 0.00 0.00 0.00 2.74
376 377 7.236529 TGACTACCGATAATATTACCTCCACT 58.763 38.462 0.00 0.00 0.00 4.00
377 378 7.392673 TCTGACTACCGATAATATTACCTCCAC 59.607 40.741 0.00 0.00 0.00 4.02
378 379 7.464273 TCTGACTACCGATAATATTACCTCCA 58.536 38.462 0.00 0.00 0.00 3.86
379 380 7.828223 TCTCTGACTACCGATAATATTACCTCC 59.172 40.741 0.00 0.00 0.00 4.30
402 403 8.507470 AAAATAAACATCGAAAGCAAGTTCTC 57.493 30.769 0.00 0.00 0.00 2.87
404 405 9.394477 ACTAAAATAAACATCGAAAGCAAGTTC 57.606 29.630 0.00 0.00 0.00 3.01
478 479 0.791610 GGAAACGCCGTATTTGCACG 60.792 55.000 0.00 0.00 41.59 5.34
490 491 1.669265 CGGGAGGAAATTAGGAAACGC 59.331 52.381 0.00 0.00 0.00 4.84
493 494 4.722781 TGGATACGGGAGGAAATTAGGAAA 59.277 41.667 0.00 0.00 42.51 3.13
494 495 4.300345 TGGATACGGGAGGAAATTAGGAA 58.700 43.478 0.00 0.00 42.51 3.36
495 496 3.901844 CTGGATACGGGAGGAAATTAGGA 59.098 47.826 0.00 0.00 40.24 2.94
496 497 3.557264 GCTGGATACGGGAGGAAATTAGG 60.557 52.174 0.00 0.00 45.89 2.69
497 498 3.557264 GGCTGGATACGGGAGGAAATTAG 60.557 52.174 0.00 0.00 45.89 1.73
498 499 2.370849 GGCTGGATACGGGAGGAAATTA 59.629 50.000 0.00 0.00 45.89 1.40
499 500 1.143073 GGCTGGATACGGGAGGAAATT 59.857 52.381 0.00 0.00 45.89 1.82
500 501 0.765510 GGCTGGATACGGGAGGAAAT 59.234 55.000 0.00 0.00 45.89 2.17
501 502 0.619255 TGGCTGGATACGGGAGGAAA 60.619 55.000 0.00 0.00 45.89 3.13
570 573 1.757306 CCTTGTGCACTCCCTGACT 59.243 57.895 19.41 0.00 0.00 3.41
623 626 2.103263 CCTACTGATTAGTGGCCTCACC 59.897 54.545 3.32 0.00 44.64 4.02
624 627 3.031736 TCCTACTGATTAGTGGCCTCAC 58.968 50.000 3.32 0.00 43.93 3.51
625 628 3.398318 TCCTACTGATTAGTGGCCTCA 57.602 47.619 3.32 0.00 37.78 3.86
626 629 4.101741 ACAATCCTACTGATTAGTGGCCTC 59.898 45.833 3.32 0.00 41.85 4.70
627 630 4.040755 ACAATCCTACTGATTAGTGGCCT 58.959 43.478 3.32 0.00 41.85 5.19
628 631 4.101741 AGACAATCCTACTGATTAGTGGCC 59.898 45.833 0.00 0.00 41.85 5.36
629 632 5.163405 TGAGACAATCCTACTGATTAGTGGC 60.163 44.000 0.00 0.00 41.85 5.01
630 633 6.471233 TGAGACAATCCTACTGATTAGTGG 57.529 41.667 0.00 0.00 41.85 4.00
631 634 8.777865 TTTTGAGACAATCCTACTGATTAGTG 57.222 34.615 0.00 0.00 41.85 2.74
660 663 8.915036 CCTGTTGTTAGTATCCTACTGATTAGT 58.085 37.037 0.00 0.00 39.81 2.24
663 666 7.735326 ACCTGTTGTTAGTATCCTACTGATT 57.265 36.000 0.00 0.00 39.81 2.57
677 680 5.013287 TGTGGATTAGCCTAACCTGTTGTTA 59.987 40.000 0.00 0.00 37.82 2.41
680 683 3.950397 TGTGGATTAGCCTAACCTGTTG 58.050 45.455 0.00 0.00 37.63 3.33
681 684 4.862641 ATGTGGATTAGCCTAACCTGTT 57.137 40.909 0.00 0.00 37.63 3.16
698 701 4.259356 CACTGATAGATGGGCCATATGTG 58.741 47.826 23.48 17.58 0.00 3.21
699 702 3.265221 CCACTGATAGATGGGCCATATGT 59.735 47.826 23.48 17.25 31.83 2.29
700 703 3.882444 CCACTGATAGATGGGCCATATG 58.118 50.000 23.48 9.17 31.83 1.78
708 711 2.505407 TGGTTGACCCACTGATAGATGG 59.495 50.000 0.00 0.00 38.72 3.51
709 712 3.432749 CCTGGTTGACCCACTGATAGATG 60.433 52.174 0.00 0.00 38.72 2.90
710 713 2.774234 CCTGGTTGACCCACTGATAGAT 59.226 50.000 0.00 0.00 38.72 1.98
711 714 2.187958 CCTGGTTGACCCACTGATAGA 58.812 52.381 0.00 0.00 38.72 1.98
712 715 2.169352 CTCCTGGTTGACCCACTGATAG 59.831 54.545 0.00 0.00 38.72 2.08
713 716 2.187958 CTCCTGGTTGACCCACTGATA 58.812 52.381 0.00 0.00 38.72 2.15
714 717 0.987294 CTCCTGGTTGACCCACTGAT 59.013 55.000 0.00 0.00 38.72 2.90
715 718 0.399949 ACTCCTGGTTGACCCACTGA 60.400 55.000 0.00 0.00 38.72 3.41
716 719 0.474184 AACTCCTGGTTGACCCACTG 59.526 55.000 0.00 0.00 38.72 3.66
717 720 0.765510 GAACTCCTGGTTGACCCACT 59.234 55.000 0.00 0.00 38.72 4.00
718 721 0.472471 TGAACTCCTGGTTGACCCAC 59.528 55.000 0.00 0.00 38.72 4.61
719 722 1.444933 ATGAACTCCTGGTTGACCCA 58.555 50.000 0.00 0.00 42.51 4.51
720 723 3.344515 GTTATGAACTCCTGGTTGACCC 58.655 50.000 0.00 0.00 38.41 4.46
721 724 3.009143 AGGTTATGAACTCCTGGTTGACC 59.991 47.826 0.00 0.00 38.41 4.02
722 725 4.003648 CAGGTTATGAACTCCTGGTTGAC 58.996 47.826 0.00 0.00 43.30 3.18
723 726 3.907474 TCAGGTTATGAACTCCTGGTTGA 59.093 43.478 9.98 0.00 45.97 3.18
724 727 4.286297 TCAGGTTATGAACTCCTGGTTG 57.714 45.455 9.98 0.00 45.97 3.77
725 728 4.597507 TCTTCAGGTTATGAACTCCTGGTT 59.402 41.667 9.98 0.00 45.97 3.67
726 729 4.020128 GTCTTCAGGTTATGAACTCCTGGT 60.020 45.833 9.98 0.00 45.97 4.00
727 730 4.223923 AGTCTTCAGGTTATGAACTCCTGG 59.776 45.833 9.98 0.00 45.97 4.45
728 731 5.413309 AGTCTTCAGGTTATGAACTCCTG 57.587 43.478 4.30 4.30 43.09 3.86
729 732 4.158764 CGAGTCTTCAGGTTATGAACTCCT 59.841 45.833 4.83 0.00 43.09 3.69
730 733 4.158025 TCGAGTCTTCAGGTTATGAACTCC 59.842 45.833 4.83 0.00 43.09 3.85
731 734 5.096849 GTCGAGTCTTCAGGTTATGAACTC 58.903 45.833 0.00 0.00 43.09 3.01
732 735 4.379603 CGTCGAGTCTTCAGGTTATGAACT 60.380 45.833 0.00 0.00 43.09 3.01
733 736 3.852536 CGTCGAGTCTTCAGGTTATGAAC 59.147 47.826 0.00 0.00 43.09 3.18
734 737 3.672511 GCGTCGAGTCTTCAGGTTATGAA 60.673 47.826 0.00 0.00 45.79 2.57
735 738 2.159421 GCGTCGAGTCTTCAGGTTATGA 60.159 50.000 0.00 0.00 35.62 2.15
736 739 2.186076 GCGTCGAGTCTTCAGGTTATG 58.814 52.381 0.00 0.00 0.00 1.90
737 740 1.134560 GGCGTCGAGTCTTCAGGTTAT 59.865 52.381 0.00 0.00 0.00 1.89
738 741 0.524862 GGCGTCGAGTCTTCAGGTTA 59.475 55.000 0.00 0.00 0.00 2.85
739 742 1.289380 GGCGTCGAGTCTTCAGGTT 59.711 57.895 0.00 0.00 0.00 3.50
740 743 2.637383 GGGCGTCGAGTCTTCAGGT 61.637 63.158 0.00 0.00 0.00 4.00
741 744 2.182030 GGGCGTCGAGTCTTCAGG 59.818 66.667 0.00 0.00 0.00 3.86
742 745 2.182030 GGGGCGTCGAGTCTTCAG 59.818 66.667 0.00 0.00 0.00 3.02
743 746 3.379445 GGGGGCGTCGAGTCTTCA 61.379 66.667 0.00 0.00 0.00 3.02
744 747 2.630592 GATGGGGGCGTCGAGTCTTC 62.631 65.000 0.00 0.00 0.00 2.87
745 748 2.683933 ATGGGGGCGTCGAGTCTT 60.684 61.111 0.00 0.00 0.00 3.01
746 749 3.148279 GATGGGGGCGTCGAGTCT 61.148 66.667 0.00 0.00 0.00 3.24
747 750 4.222847 GGATGGGGGCGTCGAGTC 62.223 72.222 0.00 0.00 0.00 3.36
807 810 3.830464 AACGCGGCGGTTAGGGTTT 62.830 57.895 27.37 6.04 39.92 3.27
1649 2021 2.759114 CAAGCAGGGGAGCCAAGA 59.241 61.111 0.00 0.00 34.23 3.02
2009 2381 0.737367 CTTCAATGCGCGAGTGGAGA 60.737 55.000 12.10 0.00 0.00 3.71
2267 2671 0.973632 TATCCATGCGCTCGGGTTAT 59.026 50.000 9.73 1.40 0.00 1.89
2312 2716 9.350357 TCGCGTTTCAGGTATATAGATTAATTC 57.650 33.333 5.77 0.00 0.00 2.17
2317 2721 6.145696 GCTTTCGCGTTTCAGGTATATAGATT 59.854 38.462 5.77 0.00 0.00 2.40
2352 2756 0.677842 AGGTACTTGGTGTCGTGGTC 59.322 55.000 0.00 0.00 27.25 4.02
2388 2792 2.366301 TCATCCTTAGCGCCCCCA 60.366 61.111 2.29 0.00 0.00 4.96
2436 2840 7.787028 ACTACCTGGAATTTGTTTGCTAAAAA 58.213 30.769 0.00 0.00 0.00 1.94
2437 2841 7.354751 ACTACCTGGAATTTGTTTGCTAAAA 57.645 32.000 0.00 0.00 0.00 1.52
2438 2842 6.969993 ACTACCTGGAATTTGTTTGCTAAA 57.030 33.333 0.00 0.00 0.00 1.85
2439 2843 6.969993 AACTACCTGGAATTTGTTTGCTAA 57.030 33.333 0.00 0.00 0.00 3.09
2440 2844 6.148150 CGTAACTACCTGGAATTTGTTTGCTA 59.852 38.462 0.00 0.00 0.00 3.49
2441 2845 5.048991 CGTAACTACCTGGAATTTGTTTGCT 60.049 40.000 0.00 0.00 0.00 3.91
2442 2846 5.151389 CGTAACTACCTGGAATTTGTTTGC 58.849 41.667 0.00 0.00 0.00 3.68
2443 2847 6.140110 CACGTAACTACCTGGAATTTGTTTG 58.860 40.000 0.00 0.00 0.00 2.93
2444 2848 5.278120 GCACGTAACTACCTGGAATTTGTTT 60.278 40.000 0.00 0.00 0.00 2.83
2445 2849 4.214758 GCACGTAACTACCTGGAATTTGTT 59.785 41.667 0.00 0.67 0.00 2.83
2446 2850 3.749609 GCACGTAACTACCTGGAATTTGT 59.250 43.478 0.00 0.00 0.00 2.83
2447 2851 4.000988 AGCACGTAACTACCTGGAATTTG 58.999 43.478 0.00 0.00 0.00 2.32
2448 2852 4.281898 AGCACGTAACTACCTGGAATTT 57.718 40.909 0.00 0.00 0.00 1.82
2449 2853 3.975168 AGCACGTAACTACCTGGAATT 57.025 42.857 0.00 0.00 0.00 2.17
2450 2854 5.452917 GGAATAGCACGTAACTACCTGGAAT 60.453 44.000 0.00 0.00 0.00 3.01
2451 2855 4.142093 GGAATAGCACGTAACTACCTGGAA 60.142 45.833 0.00 0.00 0.00 3.53
2452 2856 3.382546 GGAATAGCACGTAACTACCTGGA 59.617 47.826 0.00 0.00 0.00 3.86
2453 2857 3.492137 GGGAATAGCACGTAACTACCTGG 60.492 52.174 0.00 0.00 0.00 4.45
2454 2858 3.131577 TGGGAATAGCACGTAACTACCTG 59.868 47.826 0.00 0.00 0.00 4.00
2455 2859 3.368248 TGGGAATAGCACGTAACTACCT 58.632 45.455 0.00 0.00 0.00 3.08
2456 2860 3.806625 TGGGAATAGCACGTAACTACC 57.193 47.619 0.00 0.00 0.00 3.18
2457 2861 4.982916 CAGATGGGAATAGCACGTAACTAC 59.017 45.833 0.00 0.00 0.00 2.73
2458 2862 4.891168 TCAGATGGGAATAGCACGTAACTA 59.109 41.667 0.00 0.00 0.00 2.24
2497 2901 2.821991 AAGATCGTGGGTATAGCAGC 57.178 50.000 4.02 0.00 0.00 5.25
2498 2902 5.006746 GTGAAAAAGATCGTGGGTATAGCAG 59.993 44.000 4.02 0.00 0.00 4.24
2507 2911 1.803334 TCGGGTGAAAAAGATCGTGG 58.197 50.000 0.00 0.00 0.00 4.94
2575 2979 6.346678 CGATGATCAATCTAATGAGTGTGCTG 60.347 42.308 0.00 0.00 39.11 4.41
2700 3104 4.771114 ATATTAGGTAGCCTGTGTGCAA 57.229 40.909 0.00 0.00 34.61 4.08
2702 3106 5.823045 AGAAAATATTAGGTAGCCTGTGTGC 59.177 40.000 0.00 0.00 34.61 4.57
2703 3107 7.865706 AAGAAAATATTAGGTAGCCTGTGTG 57.134 36.000 0.00 0.00 34.61 3.82
2704 3108 8.879427 AAAAGAAAATATTAGGTAGCCTGTGT 57.121 30.769 0.00 0.00 34.61 3.72
2739 3143 0.607217 TCCAACGAGGTGCTAGACGA 60.607 55.000 0.00 0.00 39.02 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.