AutoCloner

Multiple sequence alignment - TraesCS7B01G036700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G036700	chr7B	100.000	4249	0	0	1	4249	35513772	35509524	0.000000e+00	7847
1	TraesCS7B01G036700	chr7B	90.616	3037	223	27	336	3330	35313739	35310723	0.000000e+00	3973
2	TraesCS7B01G036700	chr7B	90.745	886	58	16	3372	4249	35310729	35309860	0.000000e+00	1160
3	TraesCS7B01G036700	chr7D	91.175	3388	210	37	2	3339	86769010	86765662	0.000000e+00	4518
4	TraesCS7B01G036700	chr7D	90.842	3385	196	46	20	3330	87212939	87209595	0.000000e+00	4429
5	TraesCS7B01G036700	chr7D	91.570	2859	180	25	511	3339	86924515	86921688	0.000000e+00	3888
6	TraesCS7B01G036700	chr7D	90.925	2876	205	23	447	3301	86801001	86798161	0.000000e+00	3814
7	TraesCS7B01G036700	chr7D	89.369	2521	192	40	2	2482	86927781	86925297	0.000000e+00	3101
8	TraesCS7B01G036700	chr7D	87.867	2283	220	24	182	2418	86298629	86296358	0.000000e+00	2628
9	TraesCS7B01G036700	chr7D	91.393	883	60	10	3372	4249	87209601	87208730	0.000000e+00	1195
10	TraesCS7B01G036700	chr7D	90.653	888	71	9	3371	4248	86921703	86920818	0.000000e+00	1170
11	TraesCS7B01G036700	chr7D	90.868	876	72	7	3379	4248	86798137	86797264	0.000000e+00	1168
12	TraesCS7B01G036700	chr7D	91.377	719	58	4	3371	4087	86765677	86764961	0.000000e+00	981
13	TraesCS7B01G036700	chr7D	88.252	715	70	7	3545	4249	86295245	86294535	0.000000e+00	843
14	TraesCS7B01G036700	chr7D	88.268	179	15	4	4075	4248	86761150	86760973	4.310000e-50	209
15	TraesCS7B01G036700	chr7D	92.553	94	7	0	3367	3460	86924599	86924506	7.410000e-28	135
16	TraesCS7B01G036700	chr7A	90.287	3490	265	37	785	4247	87456917	87453475	0.000000e+00	4499
17	TraesCS7B01G036700	chr7A	90.971	3389	216	34	2	3330	88014877	88011519	0.000000e+00	4481
18	TraesCS7B01G036700	chr7A	90.293	3379	235	34	2	3330	88128134	88124799	0.000000e+00	4337
19	TraesCS7B01G036700	chr7A	90.147	3400	222	40	2	3330	88442388	88439031	0.000000e+00	4318
20	TraesCS7B01G036700	chr7A	89.435	3379	248	39	2	3330	88178885	88175566	0.000000e+00	4161
21	TraesCS7B01G036700	chr7A	88.993	2662	198	38	2	2614	88324186	88321571	0.000000e+00	3205
22	TraesCS7B01G036700	chr7A	91.156	882	58	9	3372	4247	88011525	88010658	0.000000e+00	1179
23	TraesCS7B01G036700	chr7A	90.590	882	62	10	3372	4247	88175572	88174706	0.000000e+00	1149
24	TraesCS7B01G036700	chr7A	90.476	882	69	11	3372	4249	88439037	88438167	0.000000e+00	1149
25	TraesCS7B01G036700	chr7A	88.491	782	54	24	2	755	87457689	87456916	0.000000e+00	913

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G036700	chr7B	35509524	35513772	4248	True	7847.000000	7847	100.000000	1	4249	1	chr7B.!!$R1	4248
1	TraesCS7B01G036700	chr7B	35309860	35313739	3879	True	2566.500000	3973	90.680500	336	4249	2	chr7B.!!$R2	3913
2	TraesCS7B01G036700	chr7D	87208730	87212939	4209	True	2812.000000	4429	91.117500	20	4249	2	chr7D.!!$R5	4229
3	TraesCS7B01G036700	chr7D	86797264	86801001	3737	True	2491.000000	3814	90.896500	447	4248	2	chr7D.!!$R3	3801
4	TraesCS7B01G036700	chr7D	86920818	86927781	6963	True	2073.500000	3888	91.036250	2	4248	4	chr7D.!!$R4	4246
5	TraesCS7B01G036700	chr7D	86760973	86769010	8037	True	1902.666667	4518	90.273333	2	4248	3	chr7D.!!$R2	4246
6	TraesCS7B01G036700	chr7D	86294535	86298629	4094	True	1735.500000	2628	88.059500	182	4249	2	chr7D.!!$R1	4067
7	TraesCS7B01G036700	chr7A	88124799	88128134	3335	True	4337.000000	4337	90.293000	2	3330	1	chr7A.!!$R1	3328
8	TraesCS7B01G036700	chr7A	88321571	88324186	2615	True	3205.000000	3205	88.993000	2	2614	1	chr7A.!!$R2	2612
9	TraesCS7B01G036700	chr7A	88010658	88014877	4219	True	2830.000000	4481	91.063500	2	4247	2	chr7A.!!$R4	4245
10	TraesCS7B01G036700	chr7A	88438167	88442388	4221	True	2733.500000	4318	90.311500	2	4249	2	chr7A.!!$R6	4247
11	TraesCS7B01G036700	chr7A	87453475	87457689	4214	True	2706.000000	4499	89.389000	2	4247	2	chr7A.!!$R3	4245
12	TraesCS7B01G036700	chr7A	88174706	88178885	4179	True	2655.000000	4161	90.012500	2	4247	2	chr7A.!!$R5	4245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
617	716	1.202475	TGTATATTTGAGAGCGGCGCA	60.202	47.619	35.02	12.85	0.00	6.09	F
1278	4152	0.528924	TACGTTGATCTCACCGTGGG	59.471	55.000	12.26	0.00	44.49	4.61	F
1292	4166	0.867746	CGTGGGAATGCATATGACCG	59.132	55.000	6.97	0.00	0.00	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1452	4332	1.216710	GTTGCCTCCTCCTCTCGTG	59.783	63.158	0.00	0.00	4.35	R
2947	5871	0.187117	TTGGGTCATTGTTGAGGCCA	59.813	50.000	5.01	30.85	5.36	R
3249	6176	3.107601	CCATCTTTAGGAGGACAGTCCA	58.892	50.000	22.31	39.61	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
100	103	3.732212	TGGCATATGAGTGCATGAGTAC	58.268	45.455	6.97	0.00	46.81	2.73
163	167	7.432838	TGCACTTAAAAACCTATGTTCGTTTTC	59.567	33.333	0.00	0.00	40.39	2.29
175	179	4.963373	TGTTCGTTTTCCAACCTCTATGA	58.037	39.130	0.00	0.00	0.00	2.15
178	183	6.488683	TGTTCGTTTTCCAACCTCTATGATTT	59.511	34.615	0.00	0.00	0.00	2.17
179	184	6.494893	TCGTTTTCCAACCTCTATGATTTG	57.505	37.500	0.00	0.00	0.00	2.32
425	501	2.378208	TGGATGTGGGAAGAATGGTCAA	59.622	45.455	0.00	0.00	0.00	3.18
493	580	9.541884	TGTGGATCATATATGTAGCCTAGTTAA	57.458	33.333	12.42	0.00	0.00	2.01
586	685	2.493278	CAGCCAAAACCGAATGGAGATT	59.507	45.455	0.00	0.00	39.12	2.40
616	715	1.497991	TGTATATTTGAGAGCGGCGC	58.502	50.000	26.86	26.86	0.00	6.53
617	716	1.202475	TGTATATTTGAGAGCGGCGCA	60.202	47.619	35.02	12.85	0.00	6.09
618	717	1.864711	GTATATTTGAGAGCGGCGCAA	59.135	47.619	35.02	19.44	34.35	4.85
730	833	3.639561	TCAATACTCAATAGGCCTGCGTA	59.360	43.478	17.99	5.58	0.00	4.42
798	902	6.014898	GCAATTATTCGCATTGGAAAAACAC	58.985	36.000	0.00	0.00	32.98	3.32
810	915	8.797215	GCATTGGAAAAACACAAAAGATTTTTC	58.203	29.630	11.24	11.24	45.34	2.29
866	973	2.664402	AGTTTGGCATGTTCCTCAGT	57.336	45.000	0.00	0.00	0.00	3.41
882	989	7.092444	TGTTCCTCAGTGGGTCATAAGAATTAT	60.092	37.037	0.00	0.00	37.93	1.28
883	990	7.067496	TCCTCAGTGGGTCATAAGAATTATC	57.933	40.000	0.00	0.00	36.27	1.75
885	992	7.348274	TCCTCAGTGGGTCATAAGAATTATCTT	59.652	37.037	0.00	0.00	41.68	2.40
983	3850	8.714906	ACACAAGAGGGCTATAAATACACTATT	58.285	33.333	0.00	0.00	0.00	1.73
985	3852	9.561069	ACAAGAGGGCTATAAATACACTATTTG	57.439	33.333	0.00	0.00	38.70	2.32
992	3859	8.376270	GGCTATAAATACACTATTTGACTCCCT	58.624	37.037	0.00	0.00	38.70	4.20
1080	3954	2.158842	CCCACTCTCTCATGGATCCAAC	60.159	54.545	20.67	0.00	38.34	3.77
1177	4051	2.684754	TGTACGACGACAACGATGAA	57.315	45.000	0.00	0.00	42.66	2.57
1239	4113	3.069443	GCATTGTTCCCTTCAAAGACCAA	59.931	43.478	0.00	0.00	0.00	3.67
1261	4135	8.410912	ACCAAGAAACAGGTAACAAATCTTTAC	58.589	33.333	0.00	0.00	36.07	2.01
1271	4145	7.876068	AGGTAACAAATCTTTACGTTGATCTCA	59.124	33.333	0.00	0.00	41.41	3.27
1278	4152	0.528924	TACGTTGATCTCACCGTGGG	59.471	55.000	12.26	0.00	44.49	4.61
1292	4166	0.867746	CGTGGGAATGCATATGACCG	59.132	55.000	6.97	0.00	0.00	4.79
1410	4290	0.878523	GGTGCTAGCAACACACACGA	60.879	55.000	27.84	0.00	39.87	4.35
1452	4332	1.616374	TCCGAATGAAAACTTTGGGGC	59.384	47.619	0.00	0.00	0.00	5.80
1553	4440	3.503363	GTGAGGCACCGCTGATGC	61.503	66.667	0.00	0.00	42.62	3.91
1608	4498	9.701098	CAATATTTCCATAGATCAACCAATTGG	57.299	33.333	23.31	23.31	42.17	3.16
1641	4531	2.263021	GGGGTTTTTGGACCGACGG	61.263	63.158	13.61	13.61	40.75	4.79
1666	4557	1.270252	CCAAGGTTTGTCCATGGTTGC	60.270	52.381	12.58	4.25	46.56	4.17
1680	4571	2.436417	TGGTTGCATACTCTCCTTTGC	58.564	47.619	0.00	0.00	35.67	3.68
1685	4576	2.239402	TGCATACTCTCCTTTGCCATGA	59.761	45.455	0.00	0.00	34.20	3.07
1718	4609	6.702972	TGTTGTTTGTTTTCAGTGAACATG	57.297	33.333	4.68	0.00	36.92	3.21
1721	4612	7.867909	TGTTGTTTGTTTTCAGTGAACATGTAA	59.132	29.630	4.68	0.00	36.92	2.41
1780	4673	8.043113	AGATCAGTAGCTTATGTTTGTGATGAA	58.957	33.333	0.00	0.00	0.00	2.57
1811	4704	8.911918	ACTTTACTAAATGTACACATGGACAA	57.088	30.769	0.00	0.00	36.56	3.18
1882	4775	2.622470	GGTACAAGAGGACGAGGATACC	59.378	54.545	0.00	0.00	37.17	2.73
1915	4808	8.876275	ATGATAATGGATTTTCATTTCGTTGG	57.124	30.769	0.00	0.00	35.77	3.77
1921	4832	3.363341	TTTTCATTTCGTTGGGCACTC	57.637	42.857	0.00	0.00	0.00	3.51
1942	4853	5.163499	ACTCGAGGATACAAGAATCAGGAAC	60.163	44.000	18.41	0.00	41.41	3.62
2075	4986	5.470047	AGAGGAACACAAGTTAGTCGATT	57.530	39.130	0.00	0.00	38.30	3.34
2165	5076	9.450807	AAGCATGTCTACGAATTAATTTTATGC	57.549	29.630	1.43	10.29	0.00	3.14
2168	5079	7.542534	TGTCTACGAATTAATTTTATGCGGT	57.457	32.000	1.43	0.00	0.00	5.68
2390	5304	3.119424	TGCAATATGGTACGTCTTGTCGA	60.119	43.478	0.00	0.00	34.70	4.20
2407	5330	7.269937	GTCTTGTCGAAATCAAACAGATCAATG	59.730	37.037	0.00	0.00	35.39	2.82
2423	5346	6.596888	CAGATCAATGACCTGTACTGATTGTT	59.403	38.462	0.00	0.00	0.00	2.83
2436	5359	8.771920	TGTACTGATTGTTGTTTCACTATAGG	57.228	34.615	4.43	0.00	0.00	2.57
2569	5493	9.303537	GCCCGTAAATAAACAAAAATAAGCATA	57.696	29.630	0.00	0.00	0.00	3.14
2947	5871	3.558033	TCGGCAAACCCTTTCTTTTACT	58.442	40.909	0.00	0.00	0.00	2.24
3451	6395	7.771183	TGCTAAAAAGAAGTGTTTGTCATCTT	58.229	30.769	0.00	0.00	29.73	2.40
3509	6453	2.350192	CCATACGAAAGCGCACATGTTA	59.650	45.455	11.47	0.00	42.48	2.41
3514	6458	2.285834	CGAAAGCGCACATGTTATCTCC	60.286	50.000	11.47	0.00	0.00	3.71
3523	6468	4.693283	CACATGTTATCTCCATACGTGGT	58.307	43.478	0.00	0.00	46.16	4.16
3570	6614	6.152492	TGCCTACATTACAAGATTGCAATCAA	59.848	34.615	34.59	22.81	37.89	2.57
3685	6732	5.777732	ACCTTCTACATGATAGTCAGATCCC	59.222	44.000	0.00	0.00	0.00	3.85
3751	6800	0.941542	CGTTTTTCGTCCAAGAGCCA	59.058	50.000	0.00	0.00	34.52	4.75
3773	6823	7.719633	AGCCACTAGTAATTAATATTGTGTGGG	59.280	37.037	21.15	10.19	40.83	4.61
3908	6970	4.409247	AGTTTGTCACTAGGGAGTCAAACT	59.591	41.667	26.44	26.44	46.09	2.66
3971	7033	6.208599	TCATTTTAAATCCCAACACTCTCCAC	59.791	38.462	0.00	0.00	0.00	4.02
3980	7042	6.414732	TCCCAACACTCTCCACAATATTAAG	58.585	40.000	0.00	0.00	0.00	1.85
3986	7048	8.691661	ACACTCTCCACAATATTAAGTTTGTT	57.308	30.769	3.69	0.00	33.93	2.83
4066	7129	4.990543	TCATGTTACGTTCTTCTTGCTG	57.009	40.909	0.00	0.00	0.00	4.41
4072	7135	5.221130	GTTACGTTCTTCTTGCTGTAGAGT	58.779	41.667	0.00	0.00	0.00	3.24
4093	10978	0.745468	CTAGGTTGGGACGTAGGCTC	59.255	60.000	0.00	0.00	39.44	4.70
4094	10979	0.333993	TAGGTTGGGACGTAGGCTCT	59.666	55.000	0.00	0.00	0.00	4.09
4095	10980	0.333993	AGGTTGGGACGTAGGCTCTA	59.666	55.000	0.00	0.00	0.00	2.43
4096	10981	0.745468	GGTTGGGACGTAGGCTCTAG	59.255	60.000	0.00	0.00	0.00	2.43
4100	10985	1.134159	TGGGACGTAGGCTCTAGAGAC	60.134	57.143	24.24	21.57	36.46	3.36
4101	10986	1.596603	GGACGTAGGCTCTAGAGACC	58.403	60.000	22.52	20.85	37.06	3.85
4145	11031	8.044908	ACGGCCAAAAGAAGAAATTAGTAGATA	58.955	33.333	2.24	0.00	0.00	1.98
4237	11126	0.991920	TTGATCCAGTCCCCCTGAAC	59.008	55.000	0.00	0.00	44.49	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	5.989551	AAATGGCTTTTGCTTTGTAGTTG	57.010	34.783	0.00	0.00	46.54	3.16
100	103	2.724977	ATCATATGGGACTACGTGCG	57.275	50.000	2.13	0.00	0.00	5.34
163	167	7.921786	TTTCTACACAAATCATAGAGGTTGG	57.078	36.000	0.00	0.00	0.00	3.77
330	405	5.304101	TGGCACTTCATGGTAAAAAGATTGT	59.696	36.000	0.00	0.00	0.00	2.71
331	406	5.782047	TGGCACTTCATGGTAAAAAGATTG	58.218	37.500	0.00	0.00	0.00	2.67
618	717	2.362077	GTGCAAGACTCAAACCATGGTT	59.638	45.455	24.86	24.86	40.45	3.67
730	833	6.385033	GCAAGAAGATTGCTAGAAACAACAT	58.615	36.000	5.37	0.00	41.87	2.71
761	865	2.587322	TAATTGCCGCGGACCTCCAG	62.587	60.000	33.48	0.00	35.14	3.86
810	915	5.333645	CCTCGACATTGTGTCTTTCTTTGAG	60.334	44.000	8.30	5.56	44.85	3.02
885	992	9.444600	GGTCCATACAAAAGTAGATTGAACTTA	57.555	33.333	0.00	0.00	36.17	2.24
886	993	7.119262	CGGTCCATACAAAAGTAGATTGAACTT	59.881	37.037	0.00	0.00	38.82	2.66
992	3859	3.637821	ATAGCTTGGGGATGGAGACTA	57.362	47.619	0.00	0.00	0.00	2.59
1080	3954	1.073199	GTCCACCCCTGGTTGACTG	59.927	63.158	9.55	0.00	42.71	3.51
1177	4051	6.511767	CGATGTAGTTGTGCTTCTTGTTCTTT	60.512	38.462	0.00	0.00	0.00	2.52
1239	4113	7.797038	ACGTAAAGATTTGTTACCTGTTTCT	57.203	32.000	0.00	0.00	0.00	2.52
1271	4145	1.476833	GGTCATATGCATTCCCACGGT	60.477	52.381	3.54	0.00	0.00	4.83
1278	4152	3.062763	CTCCACTCGGTCATATGCATTC	58.937	50.000	3.54	0.00	0.00	2.67
1292	4166	2.365768	GGTCCCCTCCCTCCACTC	60.366	72.222	0.00	0.00	0.00	3.51
1433	4313	1.342819	TGCCCCAAAGTTTTCATTCGG	59.657	47.619	0.00	0.00	0.00	4.30
1452	4332	1.216710	GTTGCCTCCTCCTCTCGTG	59.783	63.158	0.00	0.00	0.00	4.35
1519	4406	3.387091	CCCGTCACCGTGATCCCA	61.387	66.667	4.13	0.00	0.00	4.37
1553	4440	1.881973	CACCACCATCTTGTTGTCTGG	59.118	52.381	0.00	0.00	34.84	3.86
1641	4531	1.618343	CATGGACAAACCTTGGTTCCC	59.382	52.381	5.43	8.20	39.30	3.97
1647	4537	1.411977	TGCAACCATGGACAAACCTTG	59.588	47.619	21.47	11.65	41.63	3.61
1648	4538	1.786937	TGCAACCATGGACAAACCTT	58.213	45.000	21.47	0.00	39.86	3.50
1654	4544	2.092968	GGAGAGTATGCAACCATGGACA	60.093	50.000	21.47	13.93	32.85	4.02
1666	4557	4.521146	ACTTCATGGCAAAGGAGAGTATG	58.479	43.478	5.70	0.00	0.00	2.39
1811	4704	6.342906	CCATGCTGTAAATGGAAATTGACAT	58.657	36.000	0.00	0.00	46.44	3.06
1882	4775	7.292713	TGAAAATCCATTATCATCCATGGTG	57.707	36.000	12.58	9.69	40.90	4.17
1915	4808	2.961526	TTCTTGTATCCTCGAGTGCC	57.038	50.000	12.31	0.00	0.00	5.01
1921	4832	4.806247	GTGTTCCTGATTCTTGTATCCTCG	59.194	45.833	0.00	0.00	0.00	4.63
2087	4998	8.732746	AGAACAACTAAAACTACATGACAAGT	57.267	30.769	0.00	0.00	0.00	3.16
2165	5076	5.735427	CGTTGCAAATTTAACATACCTACCG	59.265	40.000	0.00	0.00	0.00	4.02
2310	5221	9.921637	TTTTAATCAAGGTCCAATCACATAAAC	57.078	29.630	0.00	0.00	0.00	2.01
2346	5259	7.385267	TGCAATTTAATGGCTTATTTCACTGT	58.615	30.769	5.86	0.00	0.00	3.55
2357	5271	6.040391	ACGTACCATATTGCAATTTAATGGCT	59.960	34.615	28.27	20.61	40.66	4.75
2407	5330	5.527582	AGTGAAACAACAATCAGTACAGGTC	59.472	40.000	0.00	0.00	41.43	3.85
2569	5493	4.483476	GTTCGAACCACTAAAGCAACAT	57.517	40.909	17.68	0.00	0.00	2.71
2690	5614	6.721208	AGAAATGACCTGTGGACATAATGTTT	59.279	34.615	2.41	0.00	37.12	2.83
2947	5871	0.187117	TTGGGTCATTGTTGAGGCCA	59.813	50.000	5.01	0.00	30.85	5.36
3249	6176	3.107601	CCATCTTTAGGAGGACAGTCCA	58.892	50.000	22.31	0.00	39.61	4.02
3397	6341	9.593134	ACAAACACTATTAAGATGATGAGACTC	57.407	33.333	0.00	0.00	0.00	3.36
3483	6427	3.004171	TGTGCGCTTTCGTATGGTAATT	58.996	40.909	9.73	0.00	38.14	1.40
3514	6458	2.288825	ACAACAGTCAGGACCACGTATG	60.289	50.000	0.00	0.00	0.00	2.39
3523	6468	6.318648	GGCAAATTATGATACAACAGTCAGGA	59.681	38.462	0.00	0.00	0.00	3.86
3557	6601	5.486735	TTTCATGGGTTGATTGCAATCTT	57.513	34.783	33.23	5.82	35.43	2.40
3570	6614	4.154942	AGATTCTTGTGCTTTTCATGGGT	58.845	39.130	0.00	0.00	0.00	4.51
3751	6800	9.403583	CAACCCCACACAATATTAATTACTAGT	57.596	33.333	0.00	0.00	0.00	2.57
3773	6823	1.583986	TTGCCGCAACATAGCAACC	59.416	52.632	0.38	0.00	41.35	3.77
3908	6970	9.362151	AGGTTTTTATAACTGATTGGTTTCTCA	57.638	29.630	0.00	0.00	0.00	3.27
3980	7042	7.607991	TCATCCTCCATTCTTAGAGAAACAAAC	59.392	37.037	0.00	0.00	37.82	2.93
3986	7048	7.128751	TCTCTTCATCCTCCATTCTTAGAGAA	58.871	38.462	0.00	0.00	38.78	2.87
4072	7135	0.685458	GCCTACGTCCCAACCTAGGA	60.685	60.000	17.98	0.00	36.69	2.94
4093	10978	7.395772	TCTCTGCCATTTCATATAGGTCTCTAG	59.604	40.741	0.00	0.00	0.00	2.43
4094	10979	7.177568	GTCTCTGCCATTTCATATAGGTCTCTA	59.822	40.741	0.00	0.00	0.00	2.43
4095	10980	6.014669	GTCTCTGCCATTTCATATAGGTCTCT	60.015	42.308	0.00	0.00	0.00	3.10
4096	10981	6.162777	GTCTCTGCCATTTCATATAGGTCTC	58.837	44.000	0.00	0.00	0.00	3.36
4100	10985	4.248859	CCGTCTCTGCCATTTCATATAGG	58.751	47.826	0.00	0.00	0.00	2.57
4101	10986	3.681897	GCCGTCTCTGCCATTTCATATAG	59.318	47.826	0.00	0.00	0.00	1.31
4174	11060	9.750125	AAAGAAAAACACTATCCAATGTTTCTC	57.250	29.630	3.06	0.00	45.86	2.87

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.