AutoCloner

Multiple sequence alignment - TraesCS7B01G036600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G036600	chr7B	100.000	3011	0	0	1	3011	35506274	35509284	0.000000e+00	5561
1	TraesCS7B01G036600	chr7B	88.979	1597	119	22	1429	3011	35308069	35309622	0.000000e+00	1921
2	TraesCS7B01G036600	chr7B	88.814	1037	88	18	428	1440	35636760	35637792	0.000000e+00	1247
3	TraesCS7B01G036600	chr7B	90.654	428	36	4	1429	1853	35637813	35638239	1.570000e-157	566
4	TraesCS7B01G036600	chr7B	89.595	346	33	2	44	386	35635697	35636042	1.280000e-118	436
5	TraesCS7B01G036600	chr7B	86.076	158	14	5	850	1006	35301965	35302115	2.400000e-36	163
6	TraesCS7B01G036600	chr7A	83.420	3076	327	87	3	3011	87450274	87453233	0.000000e+00	2686
7	TraesCS7B01G036600	chr7A	89.279	1595	122	20	1429	3011	88436371	88437928	0.000000e+00	1953
8	TraesCS7B01G036600	chr7A	91.462	1300	94	11	1724	3011	88122403	88123697	0.000000e+00	1770
9	TraesCS7B01G036600	chr7A	91.161	1301	96	13	1724	3011	88009123	88010417	0.000000e+00	1748
10	TraesCS7B01G036600	chr7A	91.084	1301	98	12	1724	3011	88173170	88174465	0.000000e+00	1744
11	TraesCS7B01G036600	chr7A	89.854	1370	107	15	1429	2792	88315962	88317305	0.000000e+00	1731
12	TraesCS7B01G036600	chr7A	89.403	821	49	19	830	1644	88008334	88009122	0.000000e+00	1000
13	TraesCS7B01G036600	chr7A	88.707	735	44	15	915	1644	88172469	88173169	0.000000e+00	861
14	TraesCS7B01G036600	chr7A	91.149	644	44	6	803	1440	88435713	88436349	0.000000e+00	861
15	TraesCS7B01G036600	chr7A	90.683	644	48	5	803	1440	88500082	88500719	0.000000e+00	846
16	TraesCS7B01G036600	chr7A	90.526	475	42	3	363	836	88006676	88007148	2.550000e-175	625
17	TraesCS7B01G036600	chr7A	90.021	471	32	10	976	1440	88315480	88315941	2.000000e-166	595
18	TraesCS7B01G036600	chr7A	90.433	439	36	5	3	437	88314771	88315207	9.360000e-160	573
19	TraesCS7B01G036600	chr7A	90.367	436	41	1	3	437	88033887	88034322	3.370000e-159	571
20	TraesCS7B01G036600	chr7A	90.367	436	41	1	3	437	88142790	88143225	3.370000e-159	571
21	TraesCS7B01G036600	chr7A	89.908	436	43	1	3	437	88185216	88185651	7.290000e-156	560
22	TraesCS7B01G036600	chr7A	88.000	475	45	8	363	836	88119701	88120164	4.390000e-153	551
23	TraesCS7B01G036600	chr7A	89.631	434	37	6	3	433	88493426	88493854	2.040000e-151	545
24	TraesCS7B01G036600	chr7A	89.882	425	38	4	3	426	88429081	88429501	2.640000e-150	542
25	TraesCS7B01G036600	chr7A	92.364	275	19	2	3	276	87742177	87742450	1.010000e-104	390
26	TraesCS7B01G036600	chr7A	87.943	141	15	2	830	969	88121353	88121492	6.680000e-37	165
27	TraesCS7B01G036600	chr7D	89.831	1780	111	27	1252	3011	86918849	86920578	0.000000e+00	2220
28	TraesCS7B01G036600	chr7D	89.776	1604	119	19	1429	3011	87206912	87208491	0.000000e+00	2012
29	TraesCS7B01G036600	chr7D	90.415	1565	94	20	1252	2800	86755359	86756883	0.000000e+00	2008
30	TraesCS7B01G036600	chr7D	90.539	687	43	11	764	1440	87220249	87220923	0.000000e+00	889
31	TraesCS7B01G036600	chr7D	84.679	731	85	15	1429	2147	86292374	86293089	0.000000e+00	704
32	TraesCS7B01G036600	chr7D	91.391	453	25	9	991	1438	87206446	87206889	2.570000e-170	608
33	TraesCS7B01G036600	chr7D	89.295	383	23	8	830	1205	86754993	86755364	5.880000e-127	464
34	TraesCS7B01G036600	chr7D	85.839	459	40	9	3	437	87218806	87219263	5.880000e-127	464
35	TraesCS7B01G036600	chr7D	85.177	452	45	5	363	813	86887134	86887564	7.660000e-121	444
36	TraesCS7B01G036600	chr7D	84.342	479	46	11	363	836	86753439	86753893	2.750000e-120	442
37	TraesCS7B01G036600	chr7D	88.281	384	26	9	830	1205	86918482	86918854	2.750000e-120	442
38	TraesCS7B01G036600	chr7D	86.632	389	24	9	2628	3011	86796658	86797023	3.610000e-109	405
39	TraesCS7B01G036600	chr7D	88.050	318	34	3	426	740	87219940	87220256	1.020000e-99	374

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G036600	chr7B	35506274	35509284	3010	False	5561.000000	5561	100.000000	1	3011	1	chr7B.!!$F3	3010
1	TraesCS7B01G036600	chr7B	35308069	35309622	1553	False	1921.000000	1921	88.979000	1429	3011	1	chr7B.!!$F2	1582
2	TraesCS7B01G036600	chr7B	35635697	35638239	2542	False	749.666667	1247	89.687667	44	1853	3	chr7B.!!$F4	1809
3	TraesCS7B01G036600	chr7A	87450274	87453233	2959	False	2686.000000	2686	83.420000	3	3011	1	chr7A.!!$F1	3008
4	TraesCS7B01G036600	chr7A	88435713	88437928	2215	False	1407.000000	1953	90.214000	803	3011	2	chr7A.!!$F13	2208
5	TraesCS7B01G036600	chr7A	88172469	88174465	1996	False	1302.500000	1744	89.895500	915	3011	2	chr7A.!!$F11	2096
6	TraesCS7B01G036600	chr7A	88006676	88010417	3741	False	1124.333333	1748	90.363333	363	3011	3	chr7A.!!$F9	2648
7	TraesCS7B01G036600	chr7A	88314771	88317305	2534	False	966.333333	1731	90.102667	3	2792	3	chr7A.!!$F12	2789
8	TraesCS7B01G036600	chr7A	88500082	88500719	637	False	846.000000	846	90.683000	803	1440	1	chr7A.!!$F8	637
9	TraesCS7B01G036600	chr7A	88119701	88123697	3996	False	828.666667	1770	89.135000	363	3011	3	chr7A.!!$F10	2648
10	TraesCS7B01G036600	chr7D	86918482	86920578	2096	False	1331.000000	2220	89.056000	830	3011	2	chr7D.!!$F5	2181
11	TraesCS7B01G036600	chr7D	87206446	87208491	2045	False	1310.000000	2012	90.583500	991	3011	2	chr7D.!!$F6	2020
12	TraesCS7B01G036600	chr7D	86753439	86756883	3444	False	971.333333	2008	88.017333	363	2800	3	chr7D.!!$F4	2437
13	TraesCS7B01G036600	chr7D	86292374	86293089	715	False	704.000000	704	84.679000	1429	2147	1	chr7D.!!$F1	718
14	TraesCS7B01G036600	chr7D	87218806	87220923	2117	False	575.666667	889	88.142667	3	1440	3	chr7D.!!$F7	1437

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
949	2949	0.179103	GCAAGGCCCATTGAATTCCG	60.179	55.0	8.85	0.0	31.55	4.3	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2416	4896	0.392998	GGCACGTCCACCATTCAGAT	60.393	55.0	0.0	0.0	34.01	2.9	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
158	160	2.172505	TGCCCATAACTCCATGTACCAG	59.827	50.000	0.00	0.00	0.00	4.00
171	173	4.037923	CCATGTACCAGTTGCTTCTTTTGT	59.962	41.667	0.00	0.00	0.00	2.83
183	185	2.363788	TCTTTTGTCCATCTCGTCCG	57.636	50.000	0.00	0.00	0.00	4.79
186	188	3.256383	TCTTTTGTCCATCTCGTCCGTTA	59.744	43.478	0.00	0.00	0.00	3.18
221	246	2.203294	GTGTGCGTCCCAACCCTT	60.203	61.111	0.00	0.00	0.00	3.95
259	285	3.541632	AGAACACGAACCACACTTTCAT	58.458	40.909	0.00	0.00	0.00	2.57
264	290	2.357637	ACGAACCACACTTTCATGTTGG	59.642	45.455	0.00	0.00	0.00	3.77
322	352	8.181904	AGGCTTTTAGTGAATTCAAGATTCAA	57.818	30.769	10.35	0.00	39.43	2.69
375	405	3.857010	GCACAAGCAAAGTACATTGGTCC	60.857	47.826	15.10	0.00	39.92	4.46
437	467	2.648059	CACTCCCTAGCCATTCCTTTG	58.352	52.381	0.00	0.00	0.00	2.77
447	1180	7.054124	CCTAGCCATTCCTTTGTATGAGTTTA	58.946	38.462	0.00	0.00	0.00	2.01
459	1192	6.954487	TGTATGAGTTTATCTAAGCTCCGA	57.046	37.500	10.20	0.00	41.17	4.55
468	1201	4.857509	ATCTAAGCTCCGATACTTCCAC	57.142	45.455	0.00	0.00	0.00	4.02
508	1241	7.446106	ACTAATGAGACACATGGGGTTATTA	57.554	36.000	0.00	0.00	39.39	0.98
512	1245	8.924511	AATGAGACACATGGGGTTATTAATAG	57.075	34.615	0.00	0.00	39.39	1.73
644	1380	4.323553	AAGTGTCACTAGAAGTTCGCTT	57.676	40.909	5.77	3.11	40.74	4.68
667	1403	4.343526	TGCTAAACTGAGGCCATTTTTCAA	59.656	37.500	5.01	0.00	0.00	2.69
700	1438	1.200484	GTGGAGTCACTCTCGGAACTC	59.800	57.143	4.40	0.00	43.60	3.01
720	1458	3.828451	CTCCCATTGAACATTGACCAAGT	59.172	43.478	0.00	0.00	0.00	3.16
728	1467	6.861065	TGAACATTGACCAAGTACTTCTTC	57.139	37.500	4.77	5.63	33.63	2.87
949	2949	0.179103	GCAAGGCCCATTGAATTCCG	60.179	55.000	8.85	0.00	31.55	4.30
972	2972	4.814342	GCAGATCGATGCGAATGC	57.186	55.556	0.54	12.37	42.17	3.56
989	2989	2.300787	GCGACGCTCAGACACGTTT	61.301	57.895	13.73	0.00	43.71	3.60
994	2995	0.435008	CGCTCAGACACGTTTAGCAC	59.565	55.000	0.00	0.00	32.69	4.40
1077	3156	2.162408	CGAGCTTGGATTTGGGAAAGAC	59.838	50.000	0.00	0.00	0.00	3.01
1194	3279	0.464735	ATCTCCGTCTCGTCCTCCAG	60.465	60.000	0.00	0.00	0.00	3.86
1238	3438	5.788533	TGTTCCCCCTTCTTGTATTTCTCTA	59.211	40.000	0.00	0.00	0.00	2.43
1340	3621	2.540101	CACCGCTCTTACCGATTTCATC	59.460	50.000	0.00	0.00	0.00	2.92
1366	3647	1.195115	TCTGAAGCCATAGCGGTTCT	58.805	50.000	0.00	0.00	46.67	3.01
1478	3829	6.260714	TCATGGTGTTGAATATACATGACAGC	59.739	38.462	0.00	0.61	39.57	4.40
1491	3842	9.712305	ATATACATGACAGCATAGTTTCCTTAC	57.288	33.333	0.00	0.00	32.27	2.34
1498	3849	5.293569	ACAGCATAGTTTCCTTACGCAATAC	59.706	40.000	0.00	0.00	0.00	1.89
1505	3856	5.408604	AGTTTCCTTACGCAATACTCAGTTG	59.591	40.000	0.00	0.00	0.00	3.16
1696	4142	2.588877	CCGGAGGCTGGTAATGCG	60.589	66.667	0.00	0.00	46.14	4.73
1700	4146	0.392461	GGAGGCTGGTAATGCGAACA	60.392	55.000	0.00	0.00	0.00	3.18
1708	4154	1.060122	GGTAATGCGAACACGTGCTAC	59.940	52.381	17.22	6.31	0.00	3.58
1713	4159	1.068474	GCGAACACGTGCTACTGATT	58.932	50.000	17.22	0.00	0.00	2.57
1730	4176	2.106338	TGATTCTGACAAGGTGCAGGAA	59.894	45.455	0.00	0.00	33.05	3.36
1741	4187	1.896220	GTGCAGGAACTCATGGACAA	58.104	50.000	10.57	0.00	45.91	3.18
1770	4216	0.541863	CATCGGCCTCCAAGTACCTT	59.458	55.000	0.00	0.00	0.00	3.50
1785	4232	0.486879	ACCTTTGGGCATCCTTTCCA	59.513	50.000	0.00	0.00	35.63	3.53
2057	4533	2.984471	CGTACAGCGTCACAAAGTACAT	59.016	45.455	0.00	0.00	35.89	2.29
2088	4564	1.078759	GTTCACGAGATCCGGCACTG	61.079	60.000	0.00	0.00	43.93	3.66
2168	4644	3.716601	GCTCCTCTGAATCAGTCTTAGC	58.283	50.000	10.36	11.02	32.61	3.09
2226	4704	6.456795	AGCTTTATAATTTCAACAGAGGCC	57.543	37.500	0.00	0.00	0.00	5.19
2273	4751	6.734502	AATCTAGGTCTAAACTAGGGCTTC	57.265	41.667	0.00	0.00	38.71	3.86
2292	4770	1.211703	TCACTTCTGTTGTCTTGGCCA	59.788	47.619	0.00	0.00	0.00	5.36
2364	4844	0.389817	TCTTGAGTCGGTTGGATGCG	60.390	55.000	0.00	0.00	0.00	4.73
2416	4896	3.137176	CCTTGAGCCTCCCAATCTTGATA	59.863	47.826	0.00	0.00	0.00	2.15
2434	4914	2.309528	TATCTGAATGGTGGACGTGC	57.690	50.000	0.00	0.00	0.00	5.34
2481	4961	2.203549	CTCCCTTTCACCTGAGGCCC	62.204	65.000	0.00	0.00	0.00	5.80
2484	4964	1.001641	CTTTCACCTGAGGCCCTGG	60.002	63.158	0.00	7.39	39.53	4.45
2501	4981	0.998928	TGGCATTAAGGAAGGAGGCA	59.001	50.000	0.00	0.00	0.00	4.75
2521	5001	4.745620	GGCACCGTTATAGATGTTCTCTTC	59.254	45.833	0.00	0.00	35.28	2.87
2542	5022	7.007723	TCTTCAGCATAAAAGTTTTCCCCTTA	58.992	34.615	3.60	0.00	0.00	2.69
2555	5035	8.035448	AGTTTTCCCCTTATAGAGGTAAGATG	57.965	38.462	0.00	0.00	44.71	2.90
2572	5052	1.734465	GATGAAGGGTTTGAGCGACTG	59.266	52.381	0.00	0.00	0.00	3.51
2608	5088	3.120060	GCATGATGCCGTATGGAGAATTC	60.120	47.826	6.04	0.00	37.42	2.17
2626	5106	3.814268	CAACTTCCCGCCGGCATG	61.814	66.667	28.98	16.97	0.00	4.06
2707	5195	6.479001	AGATCAAAGCAATGCATTAATCAAGC	59.521	34.615	12.53	10.27	0.00	4.01
2726	5214	2.270352	CTCGAGTAGCTCCCATCTCT	57.730	55.000	3.62	0.00	0.00	3.10
2727	5215	3.410631	CTCGAGTAGCTCCCATCTCTA	57.589	52.381	3.62	0.00	0.00	2.43
2768	5256	7.861372	GGAGGCACTTTTTAAAAGAAGTAACTC	59.139	37.037	22.31	17.23	41.55	3.01
2913	5407	3.428198	GCAACATGCTCGCATAAAAACAA	59.572	39.130	3.79	0.00	40.96	2.83
2914	5408	4.663889	GCAACATGCTCGCATAAAAACAAC	60.664	41.667	3.79	0.00	40.96	3.32
2990	5488	6.826668	TGATTGAGTGTGTCTTTCTTCCTTA	58.173	36.000	0.00	0.00	0.00	2.69
2994	5492	3.075148	GTGTGTCTTTCTTCCTTAGCCC	58.925	50.000	0.00	0.00	0.00	5.19
2995	5493	2.708861	TGTGTCTTTCTTCCTTAGCCCA	59.291	45.455	0.00	0.00	0.00	5.36

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	8.668510	ATGCTATTCTAACTTGAATTGATCGT	57.331	30.769	0.00	0.00	37.73	3.73
131	133	7.172342	GGTACATGGAGTTATGGGCATTTATA	58.828	38.462	0.00	0.00	32.32	0.98
158	160	3.251004	ACGAGATGGACAAAAGAAGCAAC	59.749	43.478	0.00	0.00	0.00	4.17
171	173	8.571461	AATATATACTTAACGGACGAGATGGA	57.429	34.615	0.00	0.00	0.00	3.41
183	185	8.936864	GCACACATGGGAGAATATATACTTAAC	58.063	37.037	0.00	0.00	0.00	2.01
186	188	6.166279	CGCACACATGGGAGAATATATACTT	58.834	40.000	0.00	0.00	41.24	2.24
259	285	6.707440	ATGAACAAGATGTAAACACCAACA	57.293	33.333	0.00	0.00	0.00	3.33
375	405	2.991250	AGGATTTGTCCATGGAGTTCG	58.009	47.619	16.81	0.00	0.00	3.95
437	467	8.732531	AGTATCGGAGCTTAGATAAACTCATAC	58.267	37.037	11.94	5.77	31.95	2.39
447	1180	4.215908	TGTGGAAGTATCGGAGCTTAGAT	58.784	43.478	9.37	9.37	0.00	1.98
455	1188	5.394738	AGGATAATCTGTGGAAGTATCGGA	58.605	41.667	0.00	0.00	0.00	4.55
459	1192	9.523168	GTACTAGAGGATAATCTGTGGAAGTAT	57.477	37.037	0.00	0.00	0.00	2.12
493	1226	6.964464	TGTGACTATTAATAACCCCATGTGT	58.036	36.000	0.00	0.00	0.00	3.72
508	1241	7.990886	TGAAACTAGGTTTGTTCTGTGACTATT	59.009	33.333	0.00	0.00	35.77	1.73
512	1245	6.128117	TGTTGAAACTAGGTTTGTTCTGTGAC	60.128	38.462	0.00	0.00	35.77	3.67
565	1300	3.745799	TCAAAGTGAAATGGCTCGGTTA	58.254	40.909	0.00	0.00	0.00	2.85
630	1365	4.686554	CAGTTTAGCAAGCGAACTTCTAGT	59.313	41.667	12.09	0.00	32.29	2.57
644	1380	3.894427	TGAAAAATGGCCTCAGTTTAGCA	59.106	39.130	3.32	0.00	39.81	3.49
667	1403	4.409247	AGTGACTCCACCTAAAACTTGTCT	59.591	41.667	0.00	0.00	44.22	3.41
700	1438	4.766891	AGTACTTGGTCAATGTTCAATGGG	59.233	41.667	0.00	0.00	0.00	4.00
720	1458	3.569194	TTGTTGCCACAGGAAGAAGTA	57.431	42.857	0.00	0.00	33.22	2.24
903	2903	1.989706	AAACGTGTAAAGTGGGCCAT	58.010	45.000	10.70	0.00	0.00	4.40
904	2904	1.405821	CAAAACGTGTAAAGTGGGCCA	59.594	47.619	0.00	0.00	0.00	5.36
949	2949	0.598419	TCGCATCGATCTGCACCATC	60.598	55.000	11.30	0.00	42.40	3.51
970	2970	2.947118	AAACGTGTCTGAGCGTCGCA	62.947	55.000	21.09	0.00	40.70	5.10
971	2971	1.000233	TAAACGTGTCTGAGCGTCGC	61.000	55.000	9.80	9.80	40.70	5.19
972	2972	0.975544	CTAAACGTGTCTGAGCGTCG	59.024	55.000	7.49	0.00	40.70	5.12
973	2973	0.708918	GCTAAACGTGTCTGAGCGTC	59.291	55.000	7.49	0.00	40.70	5.19
974	2974	0.031585	TGCTAAACGTGTCTGAGCGT	59.968	50.000	0.00	2.01	43.64	5.07
989	2989	1.826340	TTCTTGCGGCCTCTGTGCTA	61.826	55.000	0.00	0.00	0.00	3.49
994	2995	1.207593	CGTTTTCTTGCGGCCTCTG	59.792	57.895	0.00	0.00	0.00	3.35
1090	3169	3.068881	CGGTGGAGAAGGAAGCCA	58.931	61.111	0.00	0.00	0.00	4.75
1175	3260	0.464735	CTGGAGGACGAGACGGAGAT	60.465	60.000	0.00	0.00	0.00	2.75
1238	3438	9.171877	GAACTCTAAGATCTCAAACAATTCCAT	57.828	33.333	0.00	0.00	0.00	3.41
1258	3458	7.540474	TCTTACTATGGTTGAACTGAACTCT	57.460	36.000	0.00	0.00	0.00	3.24
1290	3490	2.125350	CAGCTCCTCGCAGGTTCC	60.125	66.667	2.68	0.00	42.61	3.62
1306	3506	5.854010	AAGAGCGGTGATACTAAGATTCA	57.146	39.130	0.00	0.00	0.00	2.57
1340	3621	1.869767	GCTATGGCTTCAGAATGGACG	59.130	52.381	0.00	0.00	33.78	4.79
1498	3849	7.195646	TCTGAAATTACAAGTTTGCAACTGAG	58.804	34.615	0.00	0.01	41.91	3.35
1505	3856	9.899226	AATAGACTTCTGAAATTACAAGTTTGC	57.101	29.630	0.00	0.00	0.00	3.68
1687	4133	0.601576	AGCACGTGTTCGCATTACCA	60.602	50.000	18.38	0.00	41.18	3.25
1689	4135	1.990563	AGTAGCACGTGTTCGCATTAC	59.009	47.619	18.38	5.00	41.18	1.89
1692	4138	0.038618	TCAGTAGCACGTGTTCGCAT	60.039	50.000	18.38	0.00	41.18	4.73
1694	4140	1.059264	GAATCAGTAGCACGTGTTCGC	59.941	52.381	18.38	8.04	41.18	4.70
1696	4142	3.365220	GTCAGAATCAGTAGCACGTGTTC	59.635	47.826	18.38	10.79	0.00	3.18
1700	4146	3.579709	CTTGTCAGAATCAGTAGCACGT	58.420	45.455	0.00	0.00	0.00	4.49
1708	4154	2.082231	CCTGCACCTTGTCAGAATCAG	58.918	52.381	0.00	0.00	32.26	2.90
1713	4159	1.070758	GAGTTCCTGCACCTTGTCAGA	59.929	52.381	0.00	0.00	32.26	3.27
1730	4176	1.347707	ACACGGATGTTGTCCATGAGT	59.652	47.619	0.00	0.00	42.84	3.41
1770	4216	3.784178	TGTTAATGGAAAGGATGCCCAA	58.216	40.909	0.00	0.00	33.15	4.12
1888	4353	3.318017	GTCGGCCATGTATTAGCTACTG	58.682	50.000	2.24	0.00	0.00	2.74
1941	4408	1.873591	GCACAAACGTCCTCAGACAAT	59.126	47.619	0.00	0.00	43.73	2.71
2071	4547	1.532604	AACAGTGCCGGATCTCGTGA	61.533	55.000	5.05	0.00	37.11	4.35
2168	4644	1.986882	AAGGGCACACTTCCTTTGAG	58.013	50.000	0.00	0.00	40.17	3.02
2203	4681	6.190587	AGGCCTCTGTTGAAATTATAAAGCT	58.809	36.000	0.00	0.00	0.00	3.74
2273	4751	1.679139	TGGCCAAGACAACAGAAGTG	58.321	50.000	0.61	0.00	0.00	3.16
2364	4844	1.003696	CCAGGAGACCAGGAAAGGAAC	59.996	57.143	0.00	0.00	0.00	3.62
2416	4896	0.392998	GGCACGTCCACCATTCAGAT	60.393	55.000	0.00	0.00	34.01	2.90
2434	4914	4.016706	ACACGGGAAAGAGGCCGG	62.017	66.667	0.00	0.00	0.00	6.13
2481	4961	1.064463	TGCCTCCTTCCTTAATGCCAG	60.064	52.381	0.00	0.00	0.00	4.85
2484	4964	1.393603	GGTGCCTCCTTCCTTAATGC	58.606	55.000	0.00	0.00	0.00	3.56
2501	4981	5.127194	TGCTGAAGAGAACATCTATAACGGT	59.873	40.000	0.00	0.00	37.23	4.83
2521	5001	8.519799	TCTATAAGGGGAAAACTTTTATGCTG	57.480	34.615	0.00	0.00	0.00	4.41
2542	5022	6.408662	GCTCAAACCCTTCATCTTACCTCTAT	60.409	42.308	0.00	0.00	0.00	1.98
2555	5035	0.868406	CACAGTCGCTCAAACCCTTC	59.132	55.000	0.00	0.00	0.00	3.46
2572	5052	1.751927	CATGCCAGGCCCTCTTCAC	60.752	63.158	9.64	0.00	0.00	3.18
2602	5082	0.676782	CGGCGGGAAGTTGGAATTCT	60.677	55.000	5.23	0.00	0.00	2.40
2685	5173	5.726397	AGCTTGATTAATGCATTGCTTTGA	58.274	33.333	22.27	11.15	0.00	2.69
2707	5195	2.270352	AGAGATGGGAGCTACTCGAG	57.730	55.000	11.84	11.84	34.98	4.04
2724	5212	4.431416	CTCCTAGAGAGGTTGAGCTAGA	57.569	50.000	0.00	0.00	44.19	2.43
2900	5394	3.726730	GTCTTTGCGTTGTTTTTATGCGA	59.273	39.130	0.00	0.00	0.00	5.10
2990	5488	1.134431	CAAAAACAGGTGCTTTGGGCT	60.134	47.619	0.00	0.00	42.39	5.19

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.