Multiple sequence alignment - TraesCS7B01G036300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G036300 chr7B 100.000 2420 0 0 1 2420 35102333 35099914 0.000000e+00 4470.0
1 TraesCS7B01G036300 chr7B 89.457 626 45 9 1816 2420 131090472 131089847 0.000000e+00 771.0
2 TraesCS7B01G036300 chr7B 89.137 626 47 9 1816 2420 74093313 74092688 0.000000e+00 760.0
3 TraesCS7B01G036300 chr7B 82.796 279 37 7 879 1150 27493748 27494022 3.110000e-59 239.0
4 TraesCS7B01G036300 chr7D 89.953 856 21 17 847 1674 85932011 85931193 0.000000e+00 1044.0
5 TraesCS7B01G036300 chr7D 88.629 642 51 12 1800 2420 397386287 397385647 0.000000e+00 761.0
6 TraesCS7B01G036300 chr7D 80.000 260 38 10 855 1107 80322226 80322478 1.910000e-41 180.0
7 TraesCS7B01G036300 chr7D 78.846 260 41 10 855 1107 80466824 80467076 1.930000e-36 163.0
8 TraesCS7B01G036300 chr7D 82.888 187 25 3 929 1111 80389419 80389602 6.920000e-36 161.0
9 TraesCS7B01G036300 chr7D 88.889 72 6 2 1693 1764 591445038 591444969 1.190000e-13 87.9
10 TraesCS7B01G036300 chr7A 89.728 847 28 18 847 1675 87332048 87331243 0.000000e+00 1027.0
11 TraesCS7B01G036300 chr7A 87.859 626 55 12 1816 2420 226562715 226562090 0.000000e+00 715.0
12 TraesCS7B01G036300 chr7A 77.885 312 45 19 874 1167 83128991 83129296 3.200000e-39 172.0
13 TraesCS7B01G036300 chr2B 90.096 626 41 9 1816 2420 40323748 40324373 0.000000e+00 793.0
14 TraesCS7B01G036300 chr2B 98.013 453 6 1 1 453 679889979 679889530 0.000000e+00 784.0
15 TraesCS7B01G036300 chr2B 88.197 610 60 8 1816 2420 41538598 41539200 0.000000e+00 717.0
16 TraesCS7B01G036300 chr2B 98.261 115 2 0 739 853 679889532 679889418 4.080000e-48 202.0
17 TraesCS7B01G036300 chr1B 89.793 627 41 13 1816 2420 269218900 269218275 0.000000e+00 782.0
18 TraesCS7B01G036300 chr1B 94.667 450 19 2 1 449 444781171 444781616 0.000000e+00 693.0
19 TraesCS7B01G036300 chr1B 89.873 79 6 2 776 853 444784565 444784642 1.530000e-17 100.0
20 TraesCS7B01G036300 chrUn 97.792 453 7 1 1 453 265673891 265673442 0.000000e+00 778.0
21 TraesCS7B01G036300 chrUn 99.138 116 1 0 739 854 265673444 265673329 2.440000e-50 209.0
22 TraesCS7B01G036300 chr5A 97.572 453 8 1 1 453 563539698 563540147 0.000000e+00 773.0
23 TraesCS7B01G036300 chr5A 96.610 295 9 1 453 747 546793777 546794070 2.800000e-134 488.0
24 TraesCS7B01G036300 chr5A 99.153 118 1 0 736 853 563540142 563540259 1.880000e-51 213.0
25 TraesCS7B01G036300 chr2D 89.474 627 45 9 1815 2420 617082202 617082828 0.000000e+00 773.0
26 TraesCS7B01G036300 chr6B 89.348 629 46 11 1813 2420 21063405 21064033 0.000000e+00 771.0
27 TraesCS7B01G036300 chr6B 95.608 296 13 0 450 745 515015313 515015608 2.180000e-130 475.0
28 TraesCS7B01G036300 chr3D 89.567 623 43 13 1819 2420 88090867 88091488 0.000000e+00 771.0
29 TraesCS7B01G036300 chr3D 95.667 300 11 2 449 748 527633301 527633004 4.680000e-132 481.0
30 TraesCS7B01G036300 chr3B 89.189 629 47 11 1813 2420 785492405 785493033 0.000000e+00 765.0
31 TraesCS7B01G036300 chr3B 96.909 453 11 1 1 453 20027242 20026793 0.000000e+00 756.0
32 TraesCS7B01G036300 chr3B 88.818 626 49 9 1816 2420 321772619 321771994 0.000000e+00 749.0
33 TraesCS7B01G036300 chr3B 97.561 287 7 0 453 739 113928639 113928353 2.160000e-135 492.0
34 TraesCS7B01G036300 chr3B 99.130 115 1 0 739 853 20026795 20026681 8.770000e-50 207.0
35 TraesCS7B01G036300 chr5D 89.048 630 48 11 1812 2420 465701568 465702197 0.000000e+00 761.0
36 TraesCS7B01G036300 chr4B 88.871 629 49 12 1813 2420 629957290 629957918 0.000000e+00 754.0
37 TraesCS7B01G036300 chr4B 87.660 624 48 15 1816 2420 664044900 664044287 0.000000e+00 699.0
38 TraesCS7B01G036300 chr5B 88.498 626 50 10 1816 2420 613614855 613615479 0.000000e+00 737.0
39 TraesCS7B01G036300 chr4D 88.468 607 50 12 1834 2420 315601282 315600676 0.000000e+00 715.0
40 TraesCS7B01G036300 chr2A 97.603 292 7 0 450 741 685744500 685744209 3.590000e-138 501.0
41 TraesCS7B01G036300 chr3A 97.561 287 7 0 453 739 370232789 370233075 2.160000e-135 492.0
42 TraesCS7B01G036300 chr3A 96.918 292 9 0 450 741 65362646 65362937 7.780000e-135 490.0
43 TraesCS7B01G036300 chr3A 96.564 291 10 0 451 741 22785797 22786087 1.300000e-132 483.0
44 TraesCS7B01G036300 chr3A 86.842 76 8 2 1693 1767 21335827 21335753 1.540000e-12 84.2
45 TraesCS7B01G036300 chr4A 96.575 292 10 0 450 741 535033230 535032939 3.620000e-133 484.0
46 TraesCS7B01G036300 chr6D 88.206 407 31 9 59 453 411215867 411215466 1.010000e-128 470.0
47 TraesCS7B01G036300 chr6D 85.256 468 23 5 1 453 458787606 458787170 7.940000e-120 440.0
48 TraesCS7B01G036300 chr6D 95.652 115 5 0 739 853 458787172 458787058 4.110000e-43 185.0
49 TraesCS7B01G036300 chr6D 94.068 118 6 1 739 855 411215468 411215351 6.880000e-41 178.0
50 TraesCS7B01G036300 chr6D 88.889 72 7 1 1693 1764 80391581 80391511 1.190000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G036300 chr7B 35099914 35102333 2419 True 4470.0 4470 100.0000 1 2420 1 chr7B.!!$R1 2419
1 TraesCS7B01G036300 chr7B 131089847 131090472 625 True 771.0 771 89.4570 1816 2420 1 chr7B.!!$R3 604
2 TraesCS7B01G036300 chr7B 74092688 74093313 625 True 760.0 760 89.1370 1816 2420 1 chr7B.!!$R2 604
3 TraesCS7B01G036300 chr7D 85931193 85932011 818 True 1044.0 1044 89.9530 847 1674 1 chr7D.!!$R1 827
4 TraesCS7B01G036300 chr7D 397385647 397386287 640 True 761.0 761 88.6290 1800 2420 1 chr7D.!!$R2 620
5 TraesCS7B01G036300 chr7A 87331243 87332048 805 True 1027.0 1027 89.7280 847 1675 1 chr7A.!!$R1 828
6 TraesCS7B01G036300 chr7A 226562090 226562715 625 True 715.0 715 87.8590 1816 2420 1 chr7A.!!$R2 604
7 TraesCS7B01G036300 chr2B 40323748 40324373 625 False 793.0 793 90.0960 1816 2420 1 chr2B.!!$F1 604
8 TraesCS7B01G036300 chr2B 41538598 41539200 602 False 717.0 717 88.1970 1816 2420 1 chr2B.!!$F2 604
9 TraesCS7B01G036300 chr2B 679889418 679889979 561 True 493.0 784 98.1370 1 853 2 chr2B.!!$R1 852
10 TraesCS7B01G036300 chr1B 269218275 269218900 625 True 782.0 782 89.7930 1816 2420 1 chr1B.!!$R1 604
11 TraesCS7B01G036300 chr1B 444781171 444784642 3471 False 396.5 693 92.2700 1 853 2 chr1B.!!$F1 852
12 TraesCS7B01G036300 chrUn 265673329 265673891 562 True 493.5 778 98.4650 1 854 2 chrUn.!!$R1 853
13 TraesCS7B01G036300 chr5A 563539698 563540259 561 False 493.0 773 98.3625 1 853 2 chr5A.!!$F2 852
14 TraesCS7B01G036300 chr2D 617082202 617082828 626 False 773.0 773 89.4740 1815 2420 1 chr2D.!!$F1 605
15 TraesCS7B01G036300 chr6B 21063405 21064033 628 False 771.0 771 89.3480 1813 2420 1 chr6B.!!$F1 607
16 TraesCS7B01G036300 chr3D 88090867 88091488 621 False 771.0 771 89.5670 1819 2420 1 chr3D.!!$F1 601
17 TraesCS7B01G036300 chr3B 785492405 785493033 628 False 765.0 765 89.1890 1813 2420 1 chr3B.!!$F1 607
18 TraesCS7B01G036300 chr3B 321771994 321772619 625 True 749.0 749 88.8180 1816 2420 1 chr3B.!!$R2 604
19 TraesCS7B01G036300 chr3B 20026681 20027242 561 True 481.5 756 98.0195 1 853 2 chr3B.!!$R3 852
20 TraesCS7B01G036300 chr5D 465701568 465702197 629 False 761.0 761 89.0480 1812 2420 1 chr5D.!!$F1 608
21 TraesCS7B01G036300 chr4B 629957290 629957918 628 False 754.0 754 88.8710 1813 2420 1 chr4B.!!$F1 607
22 TraesCS7B01G036300 chr4B 664044287 664044900 613 True 699.0 699 87.6600 1816 2420 1 chr4B.!!$R1 604
23 TraesCS7B01G036300 chr5B 613614855 613615479 624 False 737.0 737 88.4980 1816 2420 1 chr5B.!!$F1 604
24 TraesCS7B01G036300 chr4D 315600676 315601282 606 True 715.0 715 88.4680 1834 2420 1 chr4D.!!$R1 586
25 TraesCS7B01G036300 chr6D 411215351 411215867 516 True 324.0 470 91.1370 59 855 2 chr6D.!!$R2 796
26 TraesCS7B01G036300 chr6D 458787058 458787606 548 True 312.5 440 90.4540 1 853 2 chr6D.!!$R3 852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 617 0.322975 TCTTGGTGAAGAGCCAGCTC 59.677 55.0 11.78 11.78 43.03 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 4668 0.031857 TGGTTCCAGCAAACGCATTG 59.968 50.0 0.0 0.0 42.21 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.727970 GCATTCGGACGGAAAGATGTTTC 60.728 47.826 6.79 6.79 41.35 2.78
458 502 3.631453 CAGTGGCCTGTAAGAGCAA 57.369 52.632 3.32 0.00 34.07 3.91
459 503 1.446907 CAGTGGCCTGTAAGAGCAAG 58.553 55.000 3.32 0.00 34.07 4.01
460 504 1.059913 AGTGGCCTGTAAGAGCAAGT 58.940 50.000 3.32 0.00 34.07 3.16
461 505 2.028112 CAGTGGCCTGTAAGAGCAAGTA 60.028 50.000 3.32 0.00 34.07 2.24
462 506 2.028020 AGTGGCCTGTAAGAGCAAGTAC 60.028 50.000 3.32 0.00 34.07 2.73
463 507 1.974957 TGGCCTGTAAGAGCAAGTACA 59.025 47.619 3.32 0.00 34.07 2.90
464 508 2.370519 TGGCCTGTAAGAGCAAGTACAA 59.629 45.455 3.32 0.00 34.07 2.41
465 509 3.009033 TGGCCTGTAAGAGCAAGTACAAT 59.991 43.478 3.32 0.00 34.07 2.71
466 510 4.224147 TGGCCTGTAAGAGCAAGTACAATA 59.776 41.667 3.32 0.00 34.07 1.90
467 511 4.811557 GGCCTGTAAGAGCAAGTACAATAG 59.188 45.833 0.00 0.00 34.07 1.73
468 512 5.395324 GGCCTGTAAGAGCAAGTACAATAGA 60.395 44.000 0.00 0.00 34.07 1.98
469 513 6.284459 GCCTGTAAGAGCAAGTACAATAGAT 58.716 40.000 0.00 0.00 34.07 1.98
470 514 6.422400 GCCTGTAAGAGCAAGTACAATAGATC 59.578 42.308 0.00 0.00 34.07 2.75
471 515 7.685641 GCCTGTAAGAGCAAGTACAATAGATCT 60.686 40.741 0.00 0.00 34.07 2.75
472 516 7.651304 CCTGTAAGAGCAAGTACAATAGATCTG 59.349 40.741 5.18 0.00 34.07 2.90
473 517 8.293699 TGTAAGAGCAAGTACAATAGATCTGA 57.706 34.615 5.18 0.00 0.00 3.27
474 518 8.409371 TGTAAGAGCAAGTACAATAGATCTGAG 58.591 37.037 5.18 0.00 0.00 3.35
475 519 7.416964 AAGAGCAAGTACAATAGATCTGAGT 57.583 36.000 5.18 3.68 0.00 3.41
476 520 7.038154 AGAGCAAGTACAATAGATCTGAGTC 57.962 40.000 5.18 0.00 0.00 3.36
477 521 6.605194 AGAGCAAGTACAATAGATCTGAGTCA 59.395 38.462 5.18 0.00 0.00 3.41
478 522 6.804677 AGCAAGTACAATAGATCTGAGTCAG 58.195 40.000 14.36 14.36 0.00 3.51
479 523 5.461737 GCAAGTACAATAGATCTGAGTCAGC 59.538 44.000 15.72 2.37 0.00 4.26
480 524 6.682611 GCAAGTACAATAGATCTGAGTCAGCT 60.683 42.308 15.72 5.61 0.00 4.24
481 525 6.389830 AGTACAATAGATCTGAGTCAGCTG 57.610 41.667 15.72 7.63 0.00 4.24
482 526 4.669206 ACAATAGATCTGAGTCAGCTGG 57.331 45.455 15.72 0.00 0.00 4.85
483 527 3.181467 ACAATAGATCTGAGTCAGCTGGC 60.181 47.826 11.28 11.28 0.00 4.85
484 528 2.450867 TAGATCTGAGTCAGCTGGCT 57.549 50.000 23.48 23.48 0.00 4.75
485 529 2.450867 AGATCTGAGTCAGCTGGCTA 57.549 50.000 23.29 6.22 0.00 3.93
486 530 2.961510 AGATCTGAGTCAGCTGGCTAT 58.038 47.619 23.29 11.74 0.00 2.97
487 531 4.111255 AGATCTGAGTCAGCTGGCTATA 57.889 45.455 23.29 12.69 0.00 1.31
488 532 4.478203 AGATCTGAGTCAGCTGGCTATAA 58.522 43.478 23.29 9.71 0.00 0.98
489 533 4.523943 AGATCTGAGTCAGCTGGCTATAAG 59.476 45.833 23.29 18.58 0.00 1.73
490 534 3.903467 TCTGAGTCAGCTGGCTATAAGA 58.097 45.455 23.29 20.54 0.00 2.10
491 535 4.281657 TCTGAGTCAGCTGGCTATAAGAA 58.718 43.478 23.29 6.95 0.00 2.52
492 536 4.711846 TCTGAGTCAGCTGGCTATAAGAAA 59.288 41.667 23.29 1.83 0.00 2.52
493 537 5.365025 TCTGAGTCAGCTGGCTATAAGAAAT 59.635 40.000 23.29 0.00 0.00 2.17
494 538 6.551227 TCTGAGTCAGCTGGCTATAAGAAATA 59.449 38.462 23.29 0.76 0.00 1.40
495 539 7.069950 TCTGAGTCAGCTGGCTATAAGAAATAA 59.930 37.037 23.29 0.40 0.00 1.40
496 540 7.564793 TGAGTCAGCTGGCTATAAGAAATAAA 58.435 34.615 23.29 0.00 0.00 1.40
497 541 7.495934 TGAGTCAGCTGGCTATAAGAAATAAAC 59.504 37.037 23.29 4.23 0.00 2.01
498 542 7.569240 AGTCAGCTGGCTATAAGAAATAAACT 58.431 34.615 21.80 3.19 0.00 2.66
499 543 8.705594 AGTCAGCTGGCTATAAGAAATAAACTA 58.294 33.333 21.80 0.00 0.00 2.24
500 544 8.983724 GTCAGCTGGCTATAAGAAATAAACTAG 58.016 37.037 12.09 0.00 0.00 2.57
501 545 7.657761 TCAGCTGGCTATAAGAAATAAACTAGC 59.342 37.037 15.13 0.00 0.00 3.42
502 546 7.442364 CAGCTGGCTATAAGAAATAAACTAGCA 59.558 37.037 5.57 0.00 34.64 3.49
503 547 8.160106 AGCTGGCTATAAGAAATAAACTAGCAT 58.840 33.333 0.00 0.00 34.64 3.79
504 548 9.436957 GCTGGCTATAAGAAATAAACTAGCATA 57.563 33.333 0.00 0.00 34.64 3.14
523 567 6.207691 GCATATTTTTGCTTAGTTGGAGGA 57.792 37.500 0.00 0.00 39.57 3.71
524 568 6.630071 GCATATTTTTGCTTAGTTGGAGGAA 58.370 36.000 0.00 0.00 39.57 3.36
525 569 7.096551 GCATATTTTTGCTTAGTTGGAGGAAA 58.903 34.615 0.00 0.00 39.57 3.13
526 570 7.276438 GCATATTTTTGCTTAGTTGGAGGAAAG 59.724 37.037 0.00 0.00 39.57 2.62
527 571 6.976934 ATTTTTGCTTAGTTGGAGGAAAGA 57.023 33.333 0.00 0.00 36.14 2.52
528 572 6.391227 TTTTTGCTTAGTTGGAGGAAAGAG 57.609 37.500 0.00 0.00 36.14 2.85
529 573 4.974645 TTGCTTAGTTGGAGGAAAGAGA 57.025 40.909 0.00 0.00 0.00 3.10
530 574 4.974645 TGCTTAGTTGGAGGAAAGAGAA 57.025 40.909 0.00 0.00 0.00 2.87
531 575 4.899502 TGCTTAGTTGGAGGAAAGAGAAG 58.100 43.478 0.00 0.00 0.00 2.85
532 576 4.593206 TGCTTAGTTGGAGGAAAGAGAAGA 59.407 41.667 0.00 0.00 0.00 2.87
533 577 5.071788 TGCTTAGTTGGAGGAAAGAGAAGAA 59.928 40.000 0.00 0.00 0.00 2.52
534 578 5.641636 GCTTAGTTGGAGGAAAGAGAAGAAG 59.358 44.000 0.00 0.00 0.00 2.85
535 579 6.519213 GCTTAGTTGGAGGAAAGAGAAGAAGA 60.519 42.308 0.00 0.00 0.00 2.87
536 580 5.482163 AGTTGGAGGAAAGAGAAGAAGAG 57.518 43.478 0.00 0.00 0.00 2.85
537 581 5.151454 AGTTGGAGGAAAGAGAAGAAGAGA 58.849 41.667 0.00 0.00 0.00 3.10
538 582 5.245977 AGTTGGAGGAAAGAGAAGAAGAGAG 59.754 44.000 0.00 0.00 0.00 3.20
539 583 5.004361 TGGAGGAAAGAGAAGAAGAGAGA 57.996 43.478 0.00 0.00 0.00 3.10
540 584 5.016173 TGGAGGAAAGAGAAGAAGAGAGAG 58.984 45.833 0.00 0.00 0.00 3.20
541 585 5.222233 TGGAGGAAAGAGAAGAAGAGAGAGA 60.222 44.000 0.00 0.00 0.00 3.10
542 586 5.714806 GGAGGAAAGAGAAGAAGAGAGAGAA 59.285 44.000 0.00 0.00 0.00 2.87
543 587 6.127619 GGAGGAAAGAGAAGAAGAGAGAGAAG 60.128 46.154 0.00 0.00 0.00 2.85
544 588 5.716703 AGGAAAGAGAAGAAGAGAGAGAAGG 59.283 44.000 0.00 0.00 0.00 3.46
545 589 5.105351 GGAAAGAGAAGAAGAGAGAGAAGGG 60.105 48.000 0.00 0.00 0.00 3.95
546 590 4.946160 AGAGAAGAAGAGAGAGAAGGGA 57.054 45.455 0.00 0.00 0.00 4.20
547 591 5.269554 AGAGAAGAAGAGAGAGAAGGGAA 57.730 43.478 0.00 0.00 0.00 3.97
548 592 5.264395 AGAGAAGAAGAGAGAGAAGGGAAG 58.736 45.833 0.00 0.00 0.00 3.46
549 593 3.769300 AGAAGAAGAGAGAGAAGGGAAGC 59.231 47.826 0.00 0.00 0.00 3.86
550 594 2.099405 AGAAGAGAGAGAAGGGAAGCG 58.901 52.381 0.00 0.00 0.00 4.68
551 595 1.136110 GAAGAGAGAGAAGGGAAGCGG 59.864 57.143 0.00 0.00 0.00 5.52
552 596 0.686112 AGAGAGAGAAGGGAAGCGGG 60.686 60.000 0.00 0.00 0.00 6.13
553 597 2.188207 GAGAGAAGGGAAGCGGGC 59.812 66.667 0.00 0.00 0.00 6.13
554 598 2.284995 AGAGAAGGGAAGCGGGCT 60.285 61.111 0.00 0.00 0.00 5.19
555 599 2.188207 GAGAAGGGAAGCGGGCTC 59.812 66.667 0.00 0.00 0.00 4.70
556 600 2.284995 AGAAGGGAAGCGGGCTCT 60.285 61.111 0.00 0.00 0.00 4.09
557 601 1.904990 GAGAAGGGAAGCGGGCTCTT 61.905 60.000 0.00 0.00 0.00 2.85
558 602 1.746991 GAAGGGAAGCGGGCTCTTG 60.747 63.158 0.00 0.00 0.00 3.02
559 603 3.273788 AAGGGAAGCGGGCTCTTGG 62.274 63.158 0.00 0.00 0.00 3.61
560 604 4.035102 GGGAAGCGGGCTCTTGGT 62.035 66.667 0.00 0.00 0.00 3.67
561 605 2.747855 GGAAGCGGGCTCTTGGTG 60.748 66.667 0.00 0.00 0.00 4.17
562 606 2.347490 GAAGCGGGCTCTTGGTGA 59.653 61.111 0.00 0.00 0.00 4.02
563 607 1.302511 GAAGCGGGCTCTTGGTGAA 60.303 57.895 0.00 0.00 0.00 3.18
564 608 1.301677 GAAGCGGGCTCTTGGTGAAG 61.302 60.000 0.00 0.00 0.00 3.02
565 609 1.768684 AAGCGGGCTCTTGGTGAAGA 61.769 55.000 0.00 0.00 36.72 2.87
571 615 2.851798 CTCTTGGTGAAGAGCCAGC 58.148 57.895 0.00 0.00 46.80 4.85
572 616 0.324285 CTCTTGGTGAAGAGCCAGCT 59.676 55.000 0.00 0.00 46.80 4.24
573 617 0.322975 TCTTGGTGAAGAGCCAGCTC 59.677 55.000 11.78 11.78 43.03 4.09
581 625 2.888863 GAGCCAGCTCTAGCACGT 59.111 61.111 12.42 0.00 45.16 4.49
582 626 1.518133 GAGCCAGCTCTAGCACGTG 60.518 63.158 12.28 12.28 45.16 4.49
583 627 3.191539 GCCAGCTCTAGCACGTGC 61.192 66.667 32.79 32.79 45.16 5.34
600 644 2.857186 TGCTCCTATGCACTTTGTGA 57.143 45.000 1.52 0.00 38.12 3.58
601 645 2.703416 TGCTCCTATGCACTTTGTGAG 58.297 47.619 1.52 0.00 38.12 3.51
602 646 2.302733 TGCTCCTATGCACTTTGTGAGA 59.697 45.455 1.52 0.00 38.12 3.27
603 647 2.935201 GCTCCTATGCACTTTGTGAGAG 59.065 50.000 1.52 0.00 35.23 3.20
604 648 3.618507 GCTCCTATGCACTTTGTGAGAGT 60.619 47.826 1.52 0.00 35.23 3.24
605 649 3.930336 TCCTATGCACTTTGTGAGAGTG 58.070 45.455 1.52 0.10 45.64 3.51
606 650 3.578282 TCCTATGCACTTTGTGAGAGTGA 59.422 43.478 8.33 0.00 45.72 3.41
607 651 4.040339 TCCTATGCACTTTGTGAGAGTGAA 59.960 41.667 8.33 0.00 45.72 3.18
608 652 4.756642 CCTATGCACTTTGTGAGAGTGAAA 59.243 41.667 8.33 0.00 45.72 2.69
609 653 4.825546 ATGCACTTTGTGAGAGTGAAAG 57.174 40.909 8.33 0.00 45.72 2.62
610 654 2.945008 TGCACTTTGTGAGAGTGAAAGG 59.055 45.455 8.33 0.00 45.72 3.11
611 655 2.945668 GCACTTTGTGAGAGTGAAAGGT 59.054 45.455 8.33 0.00 45.72 3.50
612 656 3.242870 GCACTTTGTGAGAGTGAAAGGTG 60.243 47.826 8.33 0.00 45.72 4.00
613 657 3.313526 CACTTTGTGAGAGTGAAAGGTGG 59.686 47.826 0.00 0.00 45.72 4.61
614 658 2.638480 TTGTGAGAGTGAAAGGTGGG 57.362 50.000 0.00 0.00 0.00 4.61
615 659 1.507140 TGTGAGAGTGAAAGGTGGGT 58.493 50.000 0.00 0.00 0.00 4.51
616 660 1.416401 TGTGAGAGTGAAAGGTGGGTC 59.584 52.381 0.00 0.00 0.00 4.46
617 661 1.416401 GTGAGAGTGAAAGGTGGGTCA 59.584 52.381 0.00 0.00 0.00 4.02
618 662 2.039084 GTGAGAGTGAAAGGTGGGTCAT 59.961 50.000 0.00 0.00 0.00 3.06
619 663 3.260884 GTGAGAGTGAAAGGTGGGTCATA 59.739 47.826 0.00 0.00 0.00 2.15
620 664 4.080863 GTGAGAGTGAAAGGTGGGTCATAT 60.081 45.833 0.00 0.00 0.00 1.78
621 665 5.128827 GTGAGAGTGAAAGGTGGGTCATATA 59.871 44.000 0.00 0.00 0.00 0.86
622 666 5.724370 TGAGAGTGAAAGGTGGGTCATATAA 59.276 40.000 0.00 0.00 0.00 0.98
623 667 6.386927 TGAGAGTGAAAGGTGGGTCATATAAT 59.613 38.462 0.00 0.00 0.00 1.28
624 668 7.567250 TGAGAGTGAAAGGTGGGTCATATAATA 59.433 37.037 0.00 0.00 0.00 0.98
625 669 8.331931 AGAGTGAAAGGTGGGTCATATAATAA 57.668 34.615 0.00 0.00 0.00 1.40
626 670 8.778059 AGAGTGAAAGGTGGGTCATATAATAAA 58.222 33.333 0.00 0.00 0.00 1.40
627 671 9.403583 GAGTGAAAGGTGGGTCATATAATAAAA 57.596 33.333 0.00 0.00 0.00 1.52
628 672 9.762381 AGTGAAAGGTGGGTCATATAATAAAAA 57.238 29.630 0.00 0.00 0.00 1.94
679 723 6.414732 TGTACATATTGGCTATAAGATGGGC 58.585 40.000 0.00 0.00 34.46 5.36
680 724 5.786121 ACATATTGGCTATAAGATGGGCT 57.214 39.130 0.00 0.00 34.46 5.19
681 725 6.891306 ACATATTGGCTATAAGATGGGCTA 57.109 37.500 0.00 0.00 34.46 3.93
682 726 7.457380 ACATATTGGCTATAAGATGGGCTAT 57.543 36.000 0.00 0.00 34.46 2.97
683 727 8.567198 ACATATTGGCTATAAGATGGGCTATA 57.433 34.615 0.00 3.91 38.02 1.31
684 728 8.654997 ACATATTGGCTATAAGATGGGCTATAG 58.345 37.037 0.00 0.00 37.41 1.31
685 729 8.874156 CATATTGGCTATAAGATGGGCTATAGA 58.126 37.037 3.21 0.00 37.41 1.98
686 730 7.944414 ATTGGCTATAAGATGGGCTATAGAT 57.056 36.000 3.21 0.00 37.22 1.98
687 731 6.737720 TGGCTATAAGATGGGCTATAGATG 57.262 41.667 3.21 0.00 37.22 2.90
688 732 6.443832 TGGCTATAAGATGGGCTATAGATGA 58.556 40.000 3.21 0.00 37.22 2.92
689 733 6.325028 TGGCTATAAGATGGGCTATAGATGAC 59.675 42.308 3.21 0.00 37.22 3.06
690 734 6.325028 GGCTATAAGATGGGCTATAGATGACA 59.675 42.308 3.21 0.00 33.43 3.58
691 735 7.016072 GGCTATAAGATGGGCTATAGATGACAT 59.984 40.741 3.21 1.49 33.43 3.06
692 736 7.871973 GCTATAAGATGGGCTATAGATGACATG 59.128 40.741 3.21 0.00 0.00 3.21
693 737 7.984859 ATAAGATGGGCTATAGATGACATGA 57.015 36.000 3.21 0.00 0.00 3.07
694 738 5.674052 AGATGGGCTATAGATGACATGAC 57.326 43.478 3.21 0.00 0.00 3.06
695 739 5.089434 AGATGGGCTATAGATGACATGACA 58.911 41.667 3.21 0.00 0.00 3.58
696 740 5.545335 AGATGGGCTATAGATGACATGACAA 59.455 40.000 3.21 0.00 0.00 3.18
697 741 5.830799 TGGGCTATAGATGACATGACAAT 57.169 39.130 3.21 0.00 0.00 2.71
698 742 5.554070 TGGGCTATAGATGACATGACAATG 58.446 41.667 3.21 0.00 39.89 2.82
699 743 4.940046 GGGCTATAGATGACATGACAATGG 59.060 45.833 3.21 0.00 38.19 3.16
700 744 4.394300 GGCTATAGATGACATGACAATGGC 59.606 45.833 3.21 3.95 42.81 4.40
701 745 5.243981 GCTATAGATGACATGACAATGGCT 58.756 41.667 3.21 0.00 42.94 4.75
702 746 5.704515 GCTATAGATGACATGACAATGGCTT 59.295 40.000 3.21 0.00 42.94 4.35
703 747 6.875726 GCTATAGATGACATGACAATGGCTTA 59.124 38.462 3.21 0.00 42.94 3.09
704 748 7.551974 GCTATAGATGACATGACAATGGCTTAT 59.448 37.037 3.21 0.00 42.94 1.73
707 751 5.704515 AGATGACATGACAATGGCTTATAGC 59.295 40.000 0.00 0.00 42.94 2.97
734 778 7.133891 GCAGTTGGCTATACTATTAACCATG 57.866 40.000 0.00 0.00 40.25 3.66
735 779 6.348540 GCAGTTGGCTATACTATTAACCATGC 60.349 42.308 0.00 0.00 40.25 4.06
736 780 6.936900 CAGTTGGCTATACTATTAACCATGCT 59.063 38.462 0.00 0.00 0.00 3.79
737 781 7.118390 CAGTTGGCTATACTATTAACCATGCTC 59.882 40.741 0.00 0.00 0.00 4.26
872 3827 6.474140 TCCGTATCTTGAGTGCCTATAAAA 57.526 37.500 0.00 0.00 0.00 1.52
873 3828 7.062749 TCCGTATCTTGAGTGCCTATAAAAT 57.937 36.000 0.00 0.00 0.00 1.82
874 3829 8.185506 TCCGTATCTTGAGTGCCTATAAAATA 57.814 34.615 0.00 0.00 0.00 1.40
875 3830 8.086522 TCCGTATCTTGAGTGCCTATAAAATAC 58.913 37.037 0.00 0.00 0.00 1.89
876 3831 7.870954 CCGTATCTTGAGTGCCTATAAAATACA 59.129 37.037 0.00 0.00 0.00 2.29
877 3832 8.916654 CGTATCTTGAGTGCCTATAAAATACAG 58.083 37.037 0.00 0.00 0.00 2.74
963 3925 3.870419 GCAGATCTTCCACTCAAGCTTAG 59.130 47.826 0.00 0.00 0.00 2.18
1288 4259 3.264666 GGTGCATGCAACAACGAAA 57.735 47.368 30.55 0.00 33.07 3.46
1392 4363 2.881352 GGCGCGAACGAGAGGAAG 60.881 66.667 12.10 0.00 43.93 3.46
1445 4416 3.297830 GCTCAAATGCGTACCCTTTTT 57.702 42.857 0.00 0.00 0.00 1.94
1493 4464 1.355066 GAGAACCAGCTAGCACGTGC 61.355 60.000 32.79 32.79 42.49 5.34
1553 4528 7.464358 AGATGCTGTGACAACGAATAAAATAC 58.536 34.615 0.00 0.00 0.00 1.89
1590 4565 3.551915 GTAACGCGCGCTTCCCTC 61.552 66.667 32.58 9.77 0.00 4.30
1594 4577 3.423154 CGCGCGCTTCCCTCTTTT 61.423 61.111 30.48 0.00 0.00 2.27
1649 4632 3.181499 GGCATCCGATGTATACTCCTACG 60.181 52.174 10.10 3.23 0.00 3.51
1650 4633 3.688185 GCATCCGATGTATACTCCTACGA 59.312 47.826 10.10 0.00 0.00 3.43
1651 4634 4.437121 GCATCCGATGTATACTCCTACGAC 60.437 50.000 10.10 0.00 0.00 4.34
1675 4658 6.611236 ACTTTCCTTTTCCTTTTCTTGATCCA 59.389 34.615 0.00 0.00 0.00 3.41
1676 4659 7.290948 ACTTTCCTTTTCCTTTTCTTGATCCAT 59.709 33.333 0.00 0.00 0.00 3.41
1677 4660 6.840780 TCCTTTTCCTTTTCTTGATCCATC 57.159 37.500 0.00 0.00 0.00 3.51
1678 4661 5.415701 TCCTTTTCCTTTTCTTGATCCATCG 59.584 40.000 0.00 0.00 0.00 3.84
1679 4662 5.393461 CCTTTTCCTTTTCTTGATCCATCGG 60.393 44.000 0.00 0.00 0.00 4.18
1680 4663 4.301072 TTCCTTTTCTTGATCCATCGGT 57.699 40.909 0.00 0.00 0.00 4.69
1681 4664 5.429681 TTCCTTTTCTTGATCCATCGGTA 57.570 39.130 0.00 0.00 0.00 4.02
1682 4665 5.023533 TCCTTTTCTTGATCCATCGGTAG 57.976 43.478 0.00 0.00 0.00 3.18
1683 4666 4.130118 CCTTTTCTTGATCCATCGGTAGG 58.870 47.826 0.00 0.00 0.00 3.18
1684 4667 2.910688 TTCTTGATCCATCGGTAGGC 57.089 50.000 0.00 0.00 0.00 3.93
1685 4668 1.048601 TCTTGATCCATCGGTAGGCC 58.951 55.000 0.00 0.00 0.00 5.19
1686 4669 0.758734 CTTGATCCATCGGTAGGCCA 59.241 55.000 5.01 0.00 34.09 5.36
1687 4670 1.140852 CTTGATCCATCGGTAGGCCAA 59.859 52.381 5.01 0.00 34.09 4.52
1688 4671 1.434188 TGATCCATCGGTAGGCCAAT 58.566 50.000 5.01 0.00 34.09 3.16
1689 4672 1.072173 TGATCCATCGGTAGGCCAATG 59.928 52.381 5.01 0.09 34.09 2.82
1690 4673 0.250901 ATCCATCGGTAGGCCAATGC 60.251 55.000 5.01 0.00 34.09 3.56
1691 4674 2.253758 CCATCGGTAGGCCAATGCG 61.254 63.158 5.01 0.00 38.85 4.73
1692 4675 1.523711 CATCGGTAGGCCAATGCGT 60.524 57.895 5.01 0.00 38.85 5.24
1693 4676 1.095228 CATCGGTAGGCCAATGCGTT 61.095 55.000 5.01 0.00 38.85 4.84
1694 4677 0.393808 ATCGGTAGGCCAATGCGTTT 60.394 50.000 5.01 0.00 38.85 3.60
1695 4678 1.136565 CGGTAGGCCAATGCGTTTG 59.863 57.895 5.01 0.00 38.85 2.93
1696 4679 1.153842 GGTAGGCCAATGCGTTTGC 60.154 57.895 5.01 6.17 38.85 3.68
1697 4680 1.595093 GGTAGGCCAATGCGTTTGCT 61.595 55.000 13.80 3.88 38.85 3.91
1698 4681 0.456653 GTAGGCCAATGCGTTTGCTG 60.457 55.000 13.80 0.00 43.34 4.41
1699 4682 1.594194 TAGGCCAATGCGTTTGCTGG 61.594 55.000 13.80 2.44 43.34 4.85
1700 4683 2.650196 GCCAATGCGTTTGCTGGA 59.350 55.556 7.45 0.00 38.40 3.86
1701 4684 1.006337 GCCAATGCGTTTGCTGGAA 60.006 52.632 7.45 0.00 38.40 3.53
1702 4685 1.284297 GCCAATGCGTTTGCTGGAAC 61.284 55.000 7.45 0.00 38.40 3.62
1703 4686 0.667184 CCAATGCGTTTGCTGGAACC 60.667 55.000 0.00 0.00 38.40 3.62
1704 4687 0.031857 CAATGCGTTTGCTGGAACCA 59.968 50.000 0.00 0.00 43.34 3.67
1705 4688 0.749649 AATGCGTTTGCTGGAACCAA 59.250 45.000 0.00 0.00 43.34 3.67
1706 4689 0.031994 ATGCGTTTGCTGGAACCAAC 59.968 50.000 0.00 0.00 43.34 3.77
1707 4690 1.315981 TGCGTTTGCTGGAACCAACA 61.316 50.000 0.00 0.00 43.34 3.33
1708 4691 0.031994 GCGTTTGCTGGAACCAACAT 59.968 50.000 0.00 0.00 38.39 2.71
1709 4692 1.537990 GCGTTTGCTGGAACCAACATT 60.538 47.619 0.00 0.00 38.39 2.71
1710 4693 2.820330 CGTTTGCTGGAACCAACATTT 58.180 42.857 0.00 0.00 0.00 2.32
1711 4694 3.797184 GCGTTTGCTGGAACCAACATTTA 60.797 43.478 0.00 0.00 38.39 1.40
1712 4695 4.555262 CGTTTGCTGGAACCAACATTTAT 58.445 39.130 0.00 0.00 0.00 1.40
1713 4696 4.987912 CGTTTGCTGGAACCAACATTTATT 59.012 37.500 0.00 0.00 0.00 1.40
1714 4697 5.465056 CGTTTGCTGGAACCAACATTTATTT 59.535 36.000 0.00 0.00 0.00 1.40
1715 4698 6.018343 CGTTTGCTGGAACCAACATTTATTTT 60.018 34.615 0.00 0.00 0.00 1.82
1716 4699 7.466590 CGTTTGCTGGAACCAACATTTATTTTT 60.467 33.333 0.00 0.00 0.00 1.94
1717 4700 6.857777 TGCTGGAACCAACATTTATTTTTG 57.142 33.333 0.00 0.00 0.00 2.44
1718 4701 6.352516 TGCTGGAACCAACATTTATTTTTGT 58.647 32.000 0.00 0.00 0.00 2.83
1719 4702 6.825721 TGCTGGAACCAACATTTATTTTTGTT 59.174 30.769 0.00 0.00 36.53 2.83
1728 4711 8.017587 CAACATTTATTTTTGTTGGACCTAGC 57.982 34.615 7.69 0.00 45.63 3.42
1729 4712 7.296628 ACATTTATTTTTGTTGGACCTAGCA 57.703 32.000 0.00 0.00 0.00 3.49
1730 4713 7.731054 ACATTTATTTTTGTTGGACCTAGCAA 58.269 30.769 0.00 0.00 0.00 3.91
1731 4714 8.374743 ACATTTATTTTTGTTGGACCTAGCAAT 58.625 29.630 0.00 0.00 0.00 3.56
1732 4715 9.218440 CATTTATTTTTGTTGGACCTAGCAATT 57.782 29.630 0.00 0.00 0.00 2.32
1733 4716 9.791801 ATTTATTTTTGTTGGACCTAGCAATTT 57.208 25.926 0.00 0.00 0.00 1.82
1734 4717 9.620259 TTTATTTTTGTTGGACCTAGCAATTTT 57.380 25.926 0.00 0.00 0.00 1.82
1735 4718 7.728847 ATTTTTGTTGGACCTAGCAATTTTC 57.271 32.000 0.00 0.00 0.00 2.29
1736 4719 6.478512 TTTTGTTGGACCTAGCAATTTTCT 57.521 33.333 0.00 0.00 0.00 2.52
1737 4720 6.478512 TTTGTTGGACCTAGCAATTTTCTT 57.521 33.333 0.00 0.00 0.00 2.52
1738 4721 6.478512 TTGTTGGACCTAGCAATTTTCTTT 57.521 33.333 0.00 0.00 0.00 2.52
1739 4722 6.478512 TGTTGGACCTAGCAATTTTCTTTT 57.521 33.333 0.00 0.00 0.00 2.27
1740 4723 6.279882 TGTTGGACCTAGCAATTTTCTTTTG 58.720 36.000 0.00 0.00 0.00 2.44
1752 4735 7.071414 GCAATTTTCTTTTGCTACAATCAACC 58.929 34.615 1.36 0.00 44.71 3.77
1753 4736 7.254727 GCAATTTTCTTTTGCTACAATCAACCA 60.255 33.333 1.36 0.00 44.71 3.67
1754 4737 7.713764 ATTTTCTTTTGCTACAATCAACCAC 57.286 32.000 0.00 0.00 0.00 4.16
1755 4738 6.463995 TTTCTTTTGCTACAATCAACCACT 57.536 33.333 0.00 0.00 0.00 4.00
1756 4739 5.437289 TCTTTTGCTACAATCAACCACTG 57.563 39.130 0.00 0.00 0.00 3.66
1757 4740 5.129634 TCTTTTGCTACAATCAACCACTGA 58.870 37.500 0.00 0.00 38.81 3.41
1758 4741 5.592282 TCTTTTGCTACAATCAACCACTGAA 59.408 36.000 0.00 0.00 37.67 3.02
1759 4742 5.437289 TTTGCTACAATCAACCACTGAAG 57.563 39.130 0.00 0.00 37.67 3.02
1760 4743 4.085357 TGCTACAATCAACCACTGAAGT 57.915 40.909 0.00 0.00 37.67 3.01
1761 4744 4.460263 TGCTACAATCAACCACTGAAGTT 58.540 39.130 0.00 0.00 37.67 2.66
1762 4745 4.515191 TGCTACAATCAACCACTGAAGTTC 59.485 41.667 0.00 0.00 37.67 3.01
1763 4746 4.757149 GCTACAATCAACCACTGAAGTTCT 59.243 41.667 4.17 0.00 37.67 3.01
1764 4747 5.239525 GCTACAATCAACCACTGAAGTTCTT 59.760 40.000 4.17 0.00 37.67 2.52
1765 4748 5.757850 ACAATCAACCACTGAAGTTCTTC 57.242 39.130 4.17 5.70 37.67 2.87
1766 4749 5.440610 ACAATCAACCACTGAAGTTCTTCT 58.559 37.500 12.74 0.00 37.67 2.85
1767 4750 5.888161 ACAATCAACCACTGAAGTTCTTCTT 59.112 36.000 12.74 0.00 37.67 2.52
1768 4751 6.183360 ACAATCAACCACTGAAGTTCTTCTTG 60.183 38.462 12.74 8.83 37.67 3.02
1769 4752 3.627577 TCAACCACTGAAGTTCTTCTTGC 59.372 43.478 12.74 0.00 36.40 4.01
1770 4753 2.576615 ACCACTGAAGTTCTTCTTGCC 58.423 47.619 12.74 0.00 36.40 4.52
1771 4754 1.532868 CCACTGAAGTTCTTCTTGCCG 59.467 52.381 12.74 3.20 36.40 5.69
1772 4755 1.532868 CACTGAAGTTCTTCTTGCCGG 59.467 52.381 12.74 0.00 36.40 6.13
1773 4756 1.416401 ACTGAAGTTCTTCTTGCCGGA 59.584 47.619 5.05 0.00 36.40 5.14
1774 4757 2.158813 ACTGAAGTTCTTCTTGCCGGAA 60.159 45.455 5.05 0.00 36.40 4.30
1775 4758 2.878406 CTGAAGTTCTTCTTGCCGGAAA 59.122 45.455 5.05 0.00 36.40 3.13
1776 4759 3.486383 TGAAGTTCTTCTTGCCGGAAAT 58.514 40.909 5.05 0.00 36.40 2.17
1777 4760 3.888930 TGAAGTTCTTCTTGCCGGAAATT 59.111 39.130 5.05 0.00 36.40 1.82
1778 4761 4.340950 TGAAGTTCTTCTTGCCGGAAATTT 59.659 37.500 5.05 0.00 36.40 1.82
1779 4762 5.533154 TGAAGTTCTTCTTGCCGGAAATTTA 59.467 36.000 5.05 0.00 36.40 1.40
1780 4763 6.208599 TGAAGTTCTTCTTGCCGGAAATTTAT 59.791 34.615 5.05 0.00 36.40 1.40
1781 4764 6.196079 AGTTCTTCTTGCCGGAAATTTATC 57.804 37.500 5.05 0.00 0.00 1.75
1782 4765 5.125578 AGTTCTTCTTGCCGGAAATTTATCC 59.874 40.000 5.05 0.00 36.05 2.59
1783 4766 4.594970 TCTTCTTGCCGGAAATTTATCCA 58.405 39.130 5.05 0.00 39.61 3.41
1784 4767 4.398044 TCTTCTTGCCGGAAATTTATCCAC 59.602 41.667 5.05 0.00 39.61 4.02
1785 4768 2.680841 TCTTGCCGGAAATTTATCCACG 59.319 45.455 5.05 0.00 39.61 4.94
1786 4769 0.736053 TGCCGGAAATTTATCCACGC 59.264 50.000 5.05 0.00 39.61 5.34
1787 4770 0.316689 GCCGGAAATTTATCCACGCG 60.317 55.000 5.05 3.53 39.61 6.01
1788 4771 0.306533 CCGGAAATTTATCCACGCGG 59.693 55.000 12.47 0.00 39.61 6.46
1789 4772 0.316689 CGGAAATTTATCCACGCGGC 60.317 55.000 12.47 0.00 39.61 6.53
1790 4773 0.736053 GGAAATTTATCCACGCGGCA 59.264 50.000 12.47 0.00 39.42 5.69
1791 4774 1.336755 GGAAATTTATCCACGCGGCAT 59.663 47.619 12.47 0.93 39.42 4.40
1792 4775 2.550606 GGAAATTTATCCACGCGGCATA 59.449 45.455 12.47 0.00 39.42 3.14
1793 4776 3.364964 GGAAATTTATCCACGCGGCATAG 60.365 47.826 12.47 0.00 39.42 2.23
1794 4777 1.808411 ATTTATCCACGCGGCATAGG 58.192 50.000 12.47 4.13 0.00 2.57
1795 4778 0.466543 TTTATCCACGCGGCATAGGT 59.533 50.000 12.47 0.00 0.00 3.08
1796 4779 0.249699 TTATCCACGCGGCATAGGTG 60.250 55.000 12.47 0.00 0.00 4.00
1888 4871 1.078143 GCAGGTCCGCCTCATCTTT 60.078 57.895 0.00 0.00 44.97 2.52
2019 5024 6.200878 TCCCTGAATATGGAATAAAGGTCC 57.799 41.667 0.00 0.00 30.26 4.46
2086 5091 1.598130 GTGTGGAGGTGTGTCTGCC 60.598 63.158 0.00 0.00 0.00 4.85
2088 5093 1.376466 GTGGAGGTGTGTCTGCCAT 59.624 57.895 0.00 0.00 0.00 4.40
2115 5120 2.559698 TCTTTGGTGGATTTGCTCGA 57.440 45.000 0.00 0.00 0.00 4.04
2300 5305 3.877450 GGAGGGGCGATGATGGCA 61.877 66.667 1.08 0.00 35.84 4.92
2336 5342 2.862530 GCTTCAGTGCTTGTAGTCGTCA 60.863 50.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.957888 TTTCCGTCCGAATGCATGCA 60.958 50.000 25.04 25.04 0.00 3.96
40 41 3.340814 ACTACTGCAAATCCACTCCAG 57.659 47.619 0.00 0.00 0.00 3.86
223 225 5.927819 AGGGATGATGCTTTGAAAAACAAA 58.072 33.333 0.00 0.00 44.79 2.83
224 226 5.549742 AGGGATGATGCTTTGAAAAACAA 57.450 34.783 0.00 0.00 36.65 2.83
225 227 5.163322 ACAAGGGATGATGCTTTGAAAAACA 60.163 36.000 15.18 0.00 0.00 2.83
450 494 8.526667 ACTCAGATCTATTGTACTTGCTCTTA 57.473 34.615 0.00 0.00 0.00 2.10
451 495 7.123397 TGACTCAGATCTATTGTACTTGCTCTT 59.877 37.037 0.00 0.00 0.00 2.85
452 496 6.605194 TGACTCAGATCTATTGTACTTGCTCT 59.395 38.462 0.00 0.00 0.00 4.09
453 497 6.800543 TGACTCAGATCTATTGTACTTGCTC 58.199 40.000 0.00 0.00 0.00 4.26
454 498 6.682611 GCTGACTCAGATCTATTGTACTTGCT 60.683 42.308 10.45 0.00 32.44 3.91
455 499 5.461737 GCTGACTCAGATCTATTGTACTTGC 59.538 44.000 10.45 0.00 32.44 4.01
456 500 6.696583 CAGCTGACTCAGATCTATTGTACTTG 59.303 42.308 8.42 0.00 32.44 3.16
457 501 6.183360 CCAGCTGACTCAGATCTATTGTACTT 60.183 42.308 17.39 0.00 32.44 2.24
458 502 5.301551 CCAGCTGACTCAGATCTATTGTACT 59.698 44.000 17.39 0.00 32.44 2.73
459 503 5.527951 CCAGCTGACTCAGATCTATTGTAC 58.472 45.833 17.39 0.00 32.44 2.90
460 504 4.038522 GCCAGCTGACTCAGATCTATTGTA 59.961 45.833 17.39 0.00 32.44 2.41
461 505 3.181467 GCCAGCTGACTCAGATCTATTGT 60.181 47.826 17.39 0.00 32.44 2.71
462 506 3.069872 AGCCAGCTGACTCAGATCTATTG 59.930 47.826 17.39 0.00 32.44 1.90
463 507 3.307506 AGCCAGCTGACTCAGATCTATT 58.692 45.455 17.39 0.00 32.44 1.73
464 508 2.961510 AGCCAGCTGACTCAGATCTAT 58.038 47.619 17.39 0.00 32.44 1.98
465 509 2.450867 AGCCAGCTGACTCAGATCTA 57.549 50.000 17.39 0.00 32.44 1.98
466 510 2.450867 TAGCCAGCTGACTCAGATCT 57.549 50.000 17.39 0.76 32.44 2.75
467 511 4.522405 TCTTATAGCCAGCTGACTCAGATC 59.478 45.833 17.39 0.00 32.44 2.75
468 512 4.478203 TCTTATAGCCAGCTGACTCAGAT 58.522 43.478 17.39 1.75 32.44 2.90
469 513 3.903467 TCTTATAGCCAGCTGACTCAGA 58.097 45.455 17.39 8.77 32.44 3.27
470 514 4.662468 TTCTTATAGCCAGCTGACTCAG 57.338 45.455 17.39 6.38 34.12 3.35
471 515 5.620738 ATTTCTTATAGCCAGCTGACTCA 57.379 39.130 17.39 0.00 0.00 3.41
472 516 7.713073 AGTTTATTTCTTATAGCCAGCTGACTC 59.287 37.037 17.39 3.75 0.00 3.36
473 517 7.569240 AGTTTATTTCTTATAGCCAGCTGACT 58.431 34.615 17.39 12.46 0.00 3.41
474 518 7.793927 AGTTTATTTCTTATAGCCAGCTGAC 57.206 36.000 17.39 2.52 0.00 3.51
475 519 7.657761 GCTAGTTTATTTCTTATAGCCAGCTGA 59.342 37.037 17.39 0.00 31.59 4.26
476 520 7.442364 TGCTAGTTTATTTCTTATAGCCAGCTG 59.558 37.037 6.78 6.78 35.81 4.24
477 521 7.509546 TGCTAGTTTATTTCTTATAGCCAGCT 58.490 34.615 0.00 0.00 35.81 4.24
478 522 7.730364 TGCTAGTTTATTTCTTATAGCCAGC 57.270 36.000 0.00 0.00 35.81 4.85
500 544 6.207691 TCCTCCAACTAAGCAAAAATATGC 57.792 37.500 0.00 0.00 46.78 3.14
501 545 8.522830 TCTTTCCTCCAACTAAGCAAAAATATG 58.477 33.333 0.00 0.00 0.00 1.78
502 546 8.650143 TCTTTCCTCCAACTAAGCAAAAATAT 57.350 30.769 0.00 0.00 0.00 1.28
503 547 7.942341 TCTCTTTCCTCCAACTAAGCAAAAATA 59.058 33.333 0.00 0.00 0.00 1.40
504 548 6.777580 TCTCTTTCCTCCAACTAAGCAAAAAT 59.222 34.615 0.00 0.00 0.00 1.82
505 549 6.126409 TCTCTTTCCTCCAACTAAGCAAAAA 58.874 36.000 0.00 0.00 0.00 1.94
506 550 5.690865 TCTCTTTCCTCCAACTAAGCAAAA 58.309 37.500 0.00 0.00 0.00 2.44
507 551 5.304686 TCTCTTTCCTCCAACTAAGCAAA 57.695 39.130 0.00 0.00 0.00 3.68
508 552 4.974645 TCTCTTTCCTCCAACTAAGCAA 57.025 40.909 0.00 0.00 0.00 3.91
509 553 4.593206 TCTTCTCTTTCCTCCAACTAAGCA 59.407 41.667 0.00 0.00 0.00 3.91
510 554 5.153950 TCTTCTCTTTCCTCCAACTAAGC 57.846 43.478 0.00 0.00 0.00 3.09
511 555 6.998802 TCTTCTTCTCTTTCCTCCAACTAAG 58.001 40.000 0.00 0.00 0.00 2.18
512 556 6.782988 TCTCTTCTTCTCTTTCCTCCAACTAA 59.217 38.462 0.00 0.00 0.00 2.24
513 557 6.315714 TCTCTTCTTCTCTTTCCTCCAACTA 58.684 40.000 0.00 0.00 0.00 2.24
514 558 5.151454 TCTCTTCTTCTCTTTCCTCCAACT 58.849 41.667 0.00 0.00 0.00 3.16
515 559 5.245075 TCTCTCTTCTTCTCTTTCCTCCAAC 59.755 44.000 0.00 0.00 0.00 3.77
516 560 5.398236 TCTCTCTTCTTCTCTTTCCTCCAA 58.602 41.667 0.00 0.00 0.00 3.53
517 561 5.004361 TCTCTCTTCTTCTCTTTCCTCCA 57.996 43.478 0.00 0.00 0.00 3.86
518 562 5.261216 TCTCTCTCTTCTTCTCTTTCCTCC 58.739 45.833 0.00 0.00 0.00 4.30
519 563 6.127619 CCTTCTCTCTCTTCTTCTCTTTCCTC 60.128 46.154 0.00 0.00 0.00 3.71
520 564 5.716703 CCTTCTCTCTCTTCTTCTCTTTCCT 59.283 44.000 0.00 0.00 0.00 3.36
521 565 5.105351 CCCTTCTCTCTCTTCTTCTCTTTCC 60.105 48.000 0.00 0.00 0.00 3.13
522 566 5.714806 TCCCTTCTCTCTCTTCTTCTCTTTC 59.285 44.000 0.00 0.00 0.00 2.62
523 567 5.650283 TCCCTTCTCTCTCTTCTTCTCTTT 58.350 41.667 0.00 0.00 0.00 2.52
524 568 5.269554 TCCCTTCTCTCTCTTCTTCTCTT 57.730 43.478 0.00 0.00 0.00 2.85
525 569 4.946160 TCCCTTCTCTCTCTTCTTCTCT 57.054 45.455 0.00 0.00 0.00 3.10
526 570 4.142160 GCTTCCCTTCTCTCTCTTCTTCTC 60.142 50.000 0.00 0.00 0.00 2.87
527 571 3.769300 GCTTCCCTTCTCTCTCTTCTTCT 59.231 47.826 0.00 0.00 0.00 2.85
528 572 3.428862 CGCTTCCCTTCTCTCTCTTCTTC 60.429 52.174 0.00 0.00 0.00 2.87
529 573 2.495669 CGCTTCCCTTCTCTCTCTTCTT 59.504 50.000 0.00 0.00 0.00 2.52
530 574 2.099405 CGCTTCCCTTCTCTCTCTTCT 58.901 52.381 0.00 0.00 0.00 2.85
531 575 1.136110 CCGCTTCCCTTCTCTCTCTTC 59.864 57.143 0.00 0.00 0.00 2.87
532 576 1.190643 CCGCTTCCCTTCTCTCTCTT 58.809 55.000 0.00 0.00 0.00 2.85
533 577 0.686112 CCCGCTTCCCTTCTCTCTCT 60.686 60.000 0.00 0.00 0.00 3.10
534 578 1.819905 CCCGCTTCCCTTCTCTCTC 59.180 63.158 0.00 0.00 0.00 3.20
535 579 2.363172 GCCCGCTTCCCTTCTCTCT 61.363 63.158 0.00 0.00 0.00 3.10
536 580 2.188207 GCCCGCTTCCCTTCTCTC 59.812 66.667 0.00 0.00 0.00 3.20
537 581 2.284995 AGCCCGCTTCCCTTCTCT 60.285 61.111 0.00 0.00 0.00 3.10
538 582 1.904990 AAGAGCCCGCTTCCCTTCTC 61.905 60.000 0.00 0.00 0.00 2.87
539 583 1.920835 AAGAGCCCGCTTCCCTTCT 60.921 57.895 0.00 0.00 0.00 2.85
540 584 1.746991 CAAGAGCCCGCTTCCCTTC 60.747 63.158 0.00 0.00 0.00 3.46
541 585 2.352805 CAAGAGCCCGCTTCCCTT 59.647 61.111 0.00 0.00 0.00 3.95
542 586 3.721706 CCAAGAGCCCGCTTCCCT 61.722 66.667 0.00 0.00 0.00 4.20
543 587 4.035102 ACCAAGAGCCCGCTTCCC 62.035 66.667 0.00 0.00 0.00 3.97
544 588 2.747855 CACCAAGAGCCCGCTTCC 60.748 66.667 0.00 0.00 0.00 3.46
545 589 1.301677 CTTCACCAAGAGCCCGCTTC 61.302 60.000 0.00 0.00 0.00 3.86
546 590 1.302832 CTTCACCAAGAGCCCGCTT 60.303 57.895 0.00 0.00 0.00 4.68
547 591 2.217038 TCTTCACCAAGAGCCCGCT 61.217 57.895 0.00 0.00 33.38 5.52
548 592 2.347490 TCTTCACCAAGAGCCCGC 59.653 61.111 0.00 0.00 33.38 6.13
554 598 0.322975 GAGCTGGCTCTTCACCAAGA 59.677 55.000 14.51 0.00 39.80 3.02
555 599 2.851798 GAGCTGGCTCTTCACCAAG 58.148 57.895 14.51 0.00 39.80 3.61
564 608 1.518133 CACGTGCTAGAGCTGGCTC 60.518 63.158 14.02 14.02 42.66 4.70
565 609 2.575993 CACGTGCTAGAGCTGGCT 59.424 61.111 0.82 0.00 42.66 4.75
566 610 3.191539 GCACGTGCTAGAGCTGGC 61.192 66.667 32.55 1.87 42.66 4.85
581 625 2.302733 TCTCACAAAGTGCATAGGAGCA 59.697 45.455 0.00 0.00 43.35 4.26
582 626 2.935201 CTCTCACAAAGTGCATAGGAGC 59.065 50.000 0.00 0.00 32.98 4.70
583 627 3.931468 CACTCTCACAAAGTGCATAGGAG 59.069 47.826 0.00 0.00 37.88 3.69
584 628 3.578282 TCACTCTCACAAAGTGCATAGGA 59.422 43.478 0.00 0.00 43.09 2.94
585 629 3.930336 TCACTCTCACAAAGTGCATAGG 58.070 45.455 0.00 0.00 43.09 2.57
586 630 5.106791 CCTTTCACTCTCACAAAGTGCATAG 60.107 44.000 0.00 0.00 43.09 2.23
587 631 4.756642 CCTTTCACTCTCACAAAGTGCATA 59.243 41.667 0.00 0.00 43.09 3.14
588 632 3.567164 CCTTTCACTCTCACAAAGTGCAT 59.433 43.478 0.00 0.00 43.09 3.96
589 633 2.945008 CCTTTCACTCTCACAAAGTGCA 59.055 45.455 0.00 0.00 43.09 4.57
590 634 2.945668 ACCTTTCACTCTCACAAAGTGC 59.054 45.455 0.00 0.00 43.09 4.40
591 635 3.313526 CCACCTTTCACTCTCACAAAGTG 59.686 47.826 0.00 0.00 44.43 3.16
592 636 3.545703 CCACCTTTCACTCTCACAAAGT 58.454 45.455 0.00 0.00 0.00 2.66
593 637 2.880890 CCCACCTTTCACTCTCACAAAG 59.119 50.000 0.00 0.00 0.00 2.77
594 638 2.241176 ACCCACCTTTCACTCTCACAAA 59.759 45.455 0.00 0.00 0.00 2.83
595 639 1.843851 ACCCACCTTTCACTCTCACAA 59.156 47.619 0.00 0.00 0.00 3.33
596 640 1.416401 GACCCACCTTTCACTCTCACA 59.584 52.381 0.00 0.00 0.00 3.58
597 641 1.416401 TGACCCACCTTTCACTCTCAC 59.584 52.381 0.00 0.00 0.00 3.51
598 642 1.801242 TGACCCACCTTTCACTCTCA 58.199 50.000 0.00 0.00 0.00 3.27
599 643 4.762289 ATATGACCCACCTTTCACTCTC 57.238 45.455 0.00 0.00 0.00 3.20
600 644 6.831664 ATTATATGACCCACCTTTCACTCT 57.168 37.500 0.00 0.00 0.00 3.24
601 645 8.974060 TTTATTATATGACCCACCTTTCACTC 57.026 34.615 0.00 0.00 0.00 3.51
602 646 9.762381 TTTTTATTATATGACCCACCTTTCACT 57.238 29.630 0.00 0.00 0.00 3.41
653 697 7.557719 GCCCATCTTATAGCCAATATGTACAAT 59.442 37.037 0.00 0.00 0.00 2.71
654 698 6.884295 GCCCATCTTATAGCCAATATGTACAA 59.116 38.462 0.00 0.00 0.00 2.41
655 699 6.215431 AGCCCATCTTATAGCCAATATGTACA 59.785 38.462 0.00 0.00 0.00 2.90
656 700 6.653989 AGCCCATCTTATAGCCAATATGTAC 58.346 40.000 0.00 0.00 0.00 2.90
657 701 6.891306 AGCCCATCTTATAGCCAATATGTA 57.109 37.500 0.00 0.00 0.00 2.29
658 702 5.786121 AGCCCATCTTATAGCCAATATGT 57.214 39.130 0.00 0.00 0.00 2.29
659 703 8.874156 TCTATAGCCCATCTTATAGCCAATATG 58.126 37.037 0.00 0.00 0.00 1.78
660 704 9.626840 ATCTATAGCCCATCTTATAGCCAATAT 57.373 33.333 0.00 0.00 0.00 1.28
661 705 8.874156 CATCTATAGCCCATCTTATAGCCAATA 58.126 37.037 0.00 0.00 0.00 1.90
662 706 7.570232 TCATCTATAGCCCATCTTATAGCCAAT 59.430 37.037 0.00 0.00 0.00 3.16
663 707 6.902974 TCATCTATAGCCCATCTTATAGCCAA 59.097 38.462 0.00 0.00 0.00 4.52
664 708 6.325028 GTCATCTATAGCCCATCTTATAGCCA 59.675 42.308 0.00 0.00 0.00 4.75
665 709 6.325028 TGTCATCTATAGCCCATCTTATAGCC 59.675 42.308 0.00 0.00 0.00 3.93
666 710 7.353414 TGTCATCTATAGCCCATCTTATAGC 57.647 40.000 0.00 0.00 0.00 2.97
667 711 9.140874 TCATGTCATCTATAGCCCATCTTATAG 57.859 37.037 0.00 0.00 0.00 1.31
668 712 8.918116 GTCATGTCATCTATAGCCCATCTTATA 58.082 37.037 0.00 0.00 0.00 0.98
669 713 7.401204 TGTCATGTCATCTATAGCCCATCTTAT 59.599 37.037 0.00 0.00 0.00 1.73
670 714 6.725834 TGTCATGTCATCTATAGCCCATCTTA 59.274 38.462 0.00 0.00 0.00 2.10
671 715 5.545335 TGTCATGTCATCTATAGCCCATCTT 59.455 40.000 0.00 0.00 0.00 2.40
672 716 5.089434 TGTCATGTCATCTATAGCCCATCT 58.911 41.667 0.00 0.00 0.00 2.90
673 717 5.411831 TGTCATGTCATCTATAGCCCATC 57.588 43.478 0.00 0.00 0.00 3.51
674 718 5.830799 TTGTCATGTCATCTATAGCCCAT 57.169 39.130 0.00 0.00 0.00 4.00
675 719 5.513614 CCATTGTCATGTCATCTATAGCCCA 60.514 44.000 0.00 0.00 0.00 5.36
676 720 4.940046 CCATTGTCATGTCATCTATAGCCC 59.060 45.833 0.00 0.00 0.00 5.19
677 721 4.394300 GCCATTGTCATGTCATCTATAGCC 59.606 45.833 0.00 0.00 0.00 3.93
678 722 5.243981 AGCCATTGTCATGTCATCTATAGC 58.756 41.667 0.00 0.00 0.00 2.97
681 725 7.551974 GCTATAAGCCATTGTCATGTCATCTAT 59.448 37.037 0.00 0.00 34.48 1.98
682 726 6.875726 GCTATAAGCCATTGTCATGTCATCTA 59.124 38.462 0.00 0.00 34.48 1.98
683 727 5.704515 GCTATAAGCCATTGTCATGTCATCT 59.295 40.000 0.00 0.00 34.48 2.90
684 728 5.936054 GCTATAAGCCATTGTCATGTCATC 58.064 41.667 0.00 0.00 34.48 2.92
685 729 5.954296 GCTATAAGCCATTGTCATGTCAT 57.046 39.130 0.00 0.00 34.48 3.06
710 754 6.348540 GCATGGTTAATAGTATAGCCAACTGC 60.349 42.308 0.00 8.84 39.25 4.40
711 755 6.936900 AGCATGGTTAATAGTATAGCCAACTG 59.063 38.462 0.00 2.47 39.25 3.16
712 756 7.016661 AGAGCATGGTTAATAGTATAGCCAACT 59.983 37.037 0.00 5.70 39.25 3.16
713 757 7.162082 AGAGCATGGTTAATAGTATAGCCAAC 58.838 38.462 0.00 2.18 39.25 3.77
714 758 7.316393 AGAGCATGGTTAATAGTATAGCCAA 57.684 36.000 0.00 0.00 39.25 4.52
715 759 6.935240 AGAGCATGGTTAATAGTATAGCCA 57.065 37.500 0.00 3.65 39.96 4.75
716 760 9.892130 ATTTAGAGCATGGTTAATAGTATAGCC 57.108 33.333 0.00 0.00 0.00 3.93
720 764 9.224267 CAGCATTTAGAGCATGGTTAATAGTAT 57.776 33.333 0.00 0.00 29.77 2.12
721 765 8.428852 TCAGCATTTAGAGCATGGTTAATAGTA 58.571 33.333 0.00 0.00 29.77 1.82
722 766 7.282585 TCAGCATTTAGAGCATGGTTAATAGT 58.717 34.615 0.00 0.00 29.77 2.12
723 767 7.734924 TCAGCATTTAGAGCATGGTTAATAG 57.265 36.000 0.00 0.00 29.77 1.73
724 768 7.229306 CCTTCAGCATTTAGAGCATGGTTAATA 59.771 37.037 0.00 0.00 29.77 0.98
725 769 6.040166 CCTTCAGCATTTAGAGCATGGTTAAT 59.960 38.462 0.00 0.00 29.77 1.40
726 770 5.357878 CCTTCAGCATTTAGAGCATGGTTAA 59.642 40.000 0.00 0.00 29.77 2.01
727 771 4.883585 CCTTCAGCATTTAGAGCATGGTTA 59.116 41.667 0.00 0.00 29.77 2.85
728 772 3.698040 CCTTCAGCATTTAGAGCATGGTT 59.302 43.478 0.00 0.00 29.77 3.67
729 773 3.054139 TCCTTCAGCATTTAGAGCATGGT 60.054 43.478 0.00 0.00 32.49 3.55
730 774 3.548770 TCCTTCAGCATTTAGAGCATGG 58.451 45.455 0.00 0.00 0.00 3.66
731 775 5.769484 AATCCTTCAGCATTTAGAGCATG 57.231 39.130 0.00 0.00 0.00 4.06
732 776 7.886629 TTTAATCCTTCAGCATTTAGAGCAT 57.113 32.000 0.00 0.00 0.00 3.79
733 777 7.886629 ATTTAATCCTTCAGCATTTAGAGCA 57.113 32.000 0.00 0.00 0.00 4.26
734 778 8.012241 CGTATTTAATCCTTCAGCATTTAGAGC 58.988 37.037 0.00 0.00 0.00 4.09
735 779 9.046296 ACGTATTTAATCCTTCAGCATTTAGAG 57.954 33.333 0.00 0.00 0.00 2.43
736 780 8.826710 CACGTATTTAATCCTTCAGCATTTAGA 58.173 33.333 0.00 0.00 0.00 2.10
737 781 8.826710 TCACGTATTTAATCCTTCAGCATTTAG 58.173 33.333 0.00 0.00 0.00 1.85
872 3827 4.202111 TGTGCACATACGATGCTACTGTAT 60.202 41.667 17.42 0.00 43.77 2.29
873 3828 3.129638 TGTGCACATACGATGCTACTGTA 59.870 43.478 17.42 0.00 43.77 2.74
874 3829 2.094234 TGTGCACATACGATGCTACTGT 60.094 45.455 17.42 0.00 43.77 3.55
875 3830 2.539476 TGTGCACATACGATGCTACTG 58.461 47.619 17.42 0.00 43.77 2.74
876 3831 2.959507 TGTGCACATACGATGCTACT 57.040 45.000 17.42 0.00 43.77 2.57
877 3832 3.123050 TGATGTGCACATACGATGCTAC 58.877 45.455 31.45 16.12 43.77 3.58
963 3925 1.952635 GTGCACAGCAAAGCAAGGC 60.953 57.895 13.17 0.00 43.20 4.35
1286 4257 1.067916 CAGTTGCTGCCCGCTTTTT 59.932 52.632 0.00 0.00 40.11 1.94
1287 4258 2.730094 CAGTTGCTGCCCGCTTTT 59.270 55.556 0.00 0.00 40.11 2.27
1323 4294 1.823470 GCACACCTCACAGTTGCCA 60.823 57.895 0.00 0.00 0.00 4.92
1328 4299 2.771089 CATAGTTGCACACCTCACAGT 58.229 47.619 0.00 0.00 0.00 3.55
1392 4363 2.391389 GCTGCAGGTACCGAAGCAC 61.391 63.158 23.75 16.86 34.01 4.40
1454 4425 2.163412 TCAGGGTACGCATTTGATTTGC 59.837 45.455 12.95 0.00 36.74 3.68
1455 4426 3.689161 TCTCAGGGTACGCATTTGATTTG 59.311 43.478 12.95 0.00 0.00 2.32
1456 4427 3.950397 TCTCAGGGTACGCATTTGATTT 58.050 40.909 12.95 0.00 0.00 2.17
1457 4428 3.627395 TCTCAGGGTACGCATTTGATT 57.373 42.857 12.95 0.00 0.00 2.57
1458 4429 3.270877 GTTCTCAGGGTACGCATTTGAT 58.729 45.455 12.95 0.00 0.00 2.57
1459 4430 2.614481 GGTTCTCAGGGTACGCATTTGA 60.614 50.000 12.95 6.45 0.00 2.69
1460 4431 1.737793 GGTTCTCAGGGTACGCATTTG 59.262 52.381 12.95 2.05 0.00 2.32
1461 4432 1.349688 TGGTTCTCAGGGTACGCATTT 59.650 47.619 12.95 0.00 0.00 2.32
1462 4433 0.981183 TGGTTCTCAGGGTACGCATT 59.019 50.000 12.95 0.00 0.00 3.56
1463 4434 0.537188 CTGGTTCTCAGGGTACGCAT 59.463 55.000 12.95 0.00 39.76 4.73
1464 4435 1.972198 CTGGTTCTCAGGGTACGCA 59.028 57.895 12.95 0.00 39.76 5.24
1465 4436 1.448013 GCTGGTTCTCAGGGTACGC 60.448 63.158 0.77 0.77 43.54 4.42
1466 4437 1.405821 CTAGCTGGTTCTCAGGGTACG 59.594 57.143 0.00 0.00 43.54 3.67
1467 4438 1.137282 GCTAGCTGGTTCTCAGGGTAC 59.863 57.143 7.70 0.00 43.54 3.34
1468 4439 1.273041 TGCTAGCTGGTTCTCAGGGTA 60.273 52.381 17.23 0.00 43.54 3.69
1469 4440 0.545309 TGCTAGCTGGTTCTCAGGGT 60.545 55.000 17.23 0.00 43.54 4.34
1493 4464 2.137523 TGCATACATAGACGCATGCAG 58.862 47.619 19.57 12.98 46.46 4.41
1553 4528 8.676761 GCGTTACATTCGTAAGTACTGTAATAG 58.323 37.037 0.00 0.64 38.27 1.73
1560 4535 2.848302 GCGCGTTACATTCGTAAGTACT 59.152 45.455 8.43 0.00 38.27 2.73
1569 4544 1.296649 GGAAGCGCGCGTTACATTC 60.297 57.895 32.35 21.51 0.00 2.67
1635 4618 7.657023 AAAGGAAAGTCGTAGGAGTATACAT 57.343 36.000 5.50 0.00 0.00 2.29
1649 4632 7.148641 GGATCAAGAAAAGGAAAAGGAAAGTC 58.851 38.462 0.00 0.00 0.00 3.01
1650 4633 6.611236 TGGATCAAGAAAAGGAAAAGGAAAGT 59.389 34.615 0.00 0.00 0.00 2.66
1651 4634 7.054491 TGGATCAAGAAAAGGAAAAGGAAAG 57.946 36.000 0.00 0.00 0.00 2.62
1675 4658 0.393808 AAACGCATTGGCCTACCGAT 60.394 50.000 14.21 1.85 41.17 4.18
1676 4659 1.003112 AAACGCATTGGCCTACCGA 60.003 52.632 14.21 0.00 39.70 4.69
1677 4660 1.136565 CAAACGCATTGGCCTACCG 59.863 57.895 3.32 5.89 39.70 4.02
1678 4661 1.153842 GCAAACGCATTGGCCTACC 60.154 57.895 3.32 0.00 39.54 3.18
1679 4662 0.456653 CAGCAAACGCATTGGCCTAC 60.457 55.000 3.32 0.00 39.54 3.18
1680 4663 1.594194 CCAGCAAACGCATTGGCCTA 61.594 55.000 3.32 0.00 39.54 3.93
1681 4664 2.652530 CAGCAAACGCATTGGCCT 59.347 55.556 3.32 0.00 39.54 5.19
1682 4665 2.432972 CCAGCAAACGCATTGGCC 60.433 61.111 0.00 0.00 39.54 5.36
1683 4666 1.006337 TTCCAGCAAACGCATTGGC 60.006 52.632 4.01 0.00 39.54 4.52
1684 4667 0.667184 GGTTCCAGCAAACGCATTGG 60.667 55.000 4.01 0.00 39.54 3.16
1685 4668 0.031857 TGGTTCCAGCAAACGCATTG 59.968 50.000 0.00 0.00 42.21 2.82
1686 4669 0.749649 TTGGTTCCAGCAAACGCATT 59.250 45.000 0.00 0.00 32.03 3.56
1687 4670 0.031994 GTTGGTTCCAGCAAACGCAT 59.968 50.000 0.95 0.00 37.34 4.73
1688 4671 1.315981 TGTTGGTTCCAGCAAACGCA 61.316 50.000 5.94 0.00 37.34 5.24
1689 4672 0.031994 ATGTTGGTTCCAGCAAACGC 59.968 50.000 11.95 0.00 37.34 4.84
1690 4673 2.507339 AATGTTGGTTCCAGCAAACG 57.493 45.000 11.95 0.00 37.34 3.60
1691 4674 6.859420 AAATAAATGTTGGTTCCAGCAAAC 57.141 33.333 11.95 0.00 37.34 2.93
1692 4675 7.337942 ACAAAAATAAATGTTGGTTCCAGCAAA 59.662 29.630 11.95 2.67 37.34 3.68
1693 4676 6.825721 ACAAAAATAAATGTTGGTTCCAGCAA 59.174 30.769 11.95 0.00 32.60 3.91
1694 4677 6.352516 ACAAAAATAAATGTTGGTTCCAGCA 58.647 32.000 10.50 10.50 0.00 4.41
1695 4678 6.859420 ACAAAAATAAATGTTGGTTCCAGC 57.141 33.333 0.00 0.00 0.00 4.85
1704 4687 7.731054 TGCTAGGTCCAACAAAAATAAATGTT 58.269 30.769 0.00 0.00 40.24 2.71
1705 4688 7.296628 TGCTAGGTCCAACAAAAATAAATGT 57.703 32.000 0.00 0.00 0.00 2.71
1706 4689 8.776376 ATTGCTAGGTCCAACAAAAATAAATG 57.224 30.769 0.00 0.00 0.00 2.32
1707 4690 9.791801 AAATTGCTAGGTCCAACAAAAATAAAT 57.208 25.926 0.00 0.00 0.00 1.40
1708 4691 9.620259 AAAATTGCTAGGTCCAACAAAAATAAA 57.380 25.926 0.00 0.00 0.00 1.40
1709 4692 9.267084 GAAAATTGCTAGGTCCAACAAAAATAA 57.733 29.630 0.00 0.00 0.00 1.40
1710 4693 8.646900 AGAAAATTGCTAGGTCCAACAAAAATA 58.353 29.630 0.00 0.00 0.00 1.40
1711 4694 7.508687 AGAAAATTGCTAGGTCCAACAAAAAT 58.491 30.769 0.00 0.00 0.00 1.82
1712 4695 6.883744 AGAAAATTGCTAGGTCCAACAAAAA 58.116 32.000 0.00 0.00 0.00 1.94
1713 4696 6.478512 AGAAAATTGCTAGGTCCAACAAAA 57.521 33.333 0.00 0.00 0.00 2.44
1714 4697 6.478512 AAGAAAATTGCTAGGTCCAACAAA 57.521 33.333 0.00 0.00 0.00 2.83
1715 4698 6.478512 AAAGAAAATTGCTAGGTCCAACAA 57.521 33.333 0.00 0.00 0.00 2.83
1716 4699 6.279882 CAAAAGAAAATTGCTAGGTCCAACA 58.720 36.000 0.00 0.00 0.00 3.33
1717 4700 6.769608 CAAAAGAAAATTGCTAGGTCCAAC 57.230 37.500 0.00 0.00 0.00 3.77
1728 4711 8.063630 GTGGTTGATTGTAGCAAAAGAAAATTG 58.936 33.333 0.00 0.00 0.00 2.32
1729 4712 7.986889 AGTGGTTGATTGTAGCAAAAGAAAATT 59.013 29.630 0.00 0.00 0.00 1.82
1730 4713 7.439056 CAGTGGTTGATTGTAGCAAAAGAAAAT 59.561 33.333 0.00 0.00 0.00 1.82
1731 4714 6.756074 CAGTGGTTGATTGTAGCAAAAGAAAA 59.244 34.615 0.00 0.00 0.00 2.29
1732 4715 6.096141 TCAGTGGTTGATTGTAGCAAAAGAAA 59.904 34.615 0.00 0.00 0.00 2.52
1733 4716 5.592282 TCAGTGGTTGATTGTAGCAAAAGAA 59.408 36.000 0.00 0.00 0.00 2.52
1734 4717 5.129634 TCAGTGGTTGATTGTAGCAAAAGA 58.870 37.500 0.00 0.00 0.00 2.52
1735 4718 5.437289 TCAGTGGTTGATTGTAGCAAAAG 57.563 39.130 0.00 0.00 0.00 2.27
1736 4719 5.359576 ACTTCAGTGGTTGATTGTAGCAAAA 59.640 36.000 0.00 0.00 35.27 2.44
1737 4720 4.887071 ACTTCAGTGGTTGATTGTAGCAAA 59.113 37.500 0.00 0.00 35.27 3.68
1738 4721 4.460263 ACTTCAGTGGTTGATTGTAGCAA 58.540 39.130 0.00 0.00 35.27 3.91
1739 4722 4.085357 ACTTCAGTGGTTGATTGTAGCA 57.915 40.909 0.00 0.00 35.27 3.49
1740 4723 4.757149 AGAACTTCAGTGGTTGATTGTAGC 59.243 41.667 0.00 0.00 35.27 3.58
1741 4724 6.708054 AGAAGAACTTCAGTGGTTGATTGTAG 59.292 38.462 15.43 0.00 41.84 2.74
1742 4725 6.591935 AGAAGAACTTCAGTGGTTGATTGTA 58.408 36.000 15.43 0.00 41.84 2.41
1743 4726 5.440610 AGAAGAACTTCAGTGGTTGATTGT 58.559 37.500 15.43 0.00 41.84 2.71
1744 4727 6.204359 CAAGAAGAACTTCAGTGGTTGATTG 58.796 40.000 15.43 5.52 41.84 2.67
1745 4728 5.221126 GCAAGAAGAACTTCAGTGGTTGATT 60.221 40.000 15.43 0.00 41.84 2.57
1746 4729 4.276926 GCAAGAAGAACTTCAGTGGTTGAT 59.723 41.667 15.43 0.00 41.84 2.57
1747 4730 3.627577 GCAAGAAGAACTTCAGTGGTTGA 59.372 43.478 15.43 0.00 41.84 3.18
1748 4731 3.243201 GGCAAGAAGAACTTCAGTGGTTG 60.243 47.826 15.43 11.41 41.84 3.77
1749 4732 2.952310 GGCAAGAAGAACTTCAGTGGTT 59.048 45.455 15.43 0.00 41.84 3.67
1750 4733 2.576615 GGCAAGAAGAACTTCAGTGGT 58.423 47.619 15.43 0.00 41.84 4.16
1751 4734 1.532868 CGGCAAGAAGAACTTCAGTGG 59.467 52.381 15.43 4.54 41.84 4.00
1752 4735 1.532868 CCGGCAAGAAGAACTTCAGTG 59.467 52.381 15.43 13.15 41.84 3.66
1753 4736 1.416401 TCCGGCAAGAAGAACTTCAGT 59.584 47.619 15.43 2.01 41.84 3.41
1754 4737 2.169832 TCCGGCAAGAAGAACTTCAG 57.830 50.000 15.43 9.21 41.84 3.02
1755 4738 2.631160 TTCCGGCAAGAAGAACTTCA 57.369 45.000 15.43 0.00 41.84 3.02
1756 4739 4.505313 AATTTCCGGCAAGAAGAACTTC 57.495 40.909 0.00 6.46 36.61 3.01
1757 4740 4.937201 AAATTTCCGGCAAGAAGAACTT 57.063 36.364 0.00 0.00 39.70 2.66
1758 4741 5.125578 GGATAAATTTCCGGCAAGAAGAACT 59.874 40.000 0.00 0.00 0.00 3.01
1759 4742 5.105917 TGGATAAATTTCCGGCAAGAAGAAC 60.106 40.000 0.00 0.00 38.74 3.01
1760 4743 5.013547 TGGATAAATTTCCGGCAAGAAGAA 58.986 37.500 0.00 0.00 38.74 2.52
1761 4744 4.398044 GTGGATAAATTTCCGGCAAGAAGA 59.602 41.667 0.00 0.00 38.74 2.87
1762 4745 4.672409 GTGGATAAATTTCCGGCAAGAAG 58.328 43.478 0.00 0.00 38.74 2.85
1763 4746 3.127895 CGTGGATAAATTTCCGGCAAGAA 59.872 43.478 0.00 0.00 38.74 2.52
1764 4747 2.680841 CGTGGATAAATTTCCGGCAAGA 59.319 45.455 0.00 0.00 38.74 3.02
1765 4748 2.794631 GCGTGGATAAATTTCCGGCAAG 60.795 50.000 0.00 0.00 38.74 4.01
1766 4749 1.133407 GCGTGGATAAATTTCCGGCAA 59.867 47.619 0.00 0.00 38.74 4.52
1767 4750 0.736053 GCGTGGATAAATTTCCGGCA 59.264 50.000 0.00 0.00 38.74 5.69
1768 4751 0.316689 CGCGTGGATAAATTTCCGGC 60.317 55.000 0.00 0.00 38.74 6.13
1769 4752 0.306533 CCGCGTGGATAAATTTCCGG 59.693 55.000 10.20 0.00 38.74 5.14
1770 4753 0.316689 GCCGCGTGGATAAATTTCCG 60.317 55.000 21.76 0.00 38.74 4.30
1771 4754 0.736053 TGCCGCGTGGATAAATTTCC 59.264 50.000 21.76 0.00 37.49 3.13
1772 4755 2.774439 ATGCCGCGTGGATAAATTTC 57.226 45.000 21.76 0.00 37.49 2.17
1773 4756 2.552315 CCTATGCCGCGTGGATAAATTT 59.448 45.455 21.76 0.00 37.49 1.82
1774 4757 2.151202 CCTATGCCGCGTGGATAAATT 58.849 47.619 21.76 0.00 37.49 1.82
1775 4758 1.071699 ACCTATGCCGCGTGGATAAAT 59.928 47.619 21.76 8.59 37.49 1.40
1776 4759 0.466543 ACCTATGCCGCGTGGATAAA 59.533 50.000 21.76 0.24 37.49 1.40
1777 4760 0.249699 CACCTATGCCGCGTGGATAA 60.250 55.000 21.76 3.18 37.49 1.75
1778 4761 1.365999 CACCTATGCCGCGTGGATA 59.634 57.895 21.76 12.43 37.49 2.59
1779 4762 2.108976 CACCTATGCCGCGTGGAT 59.891 61.111 21.76 11.92 37.49 3.41
1780 4763 4.830765 GCACCTATGCCGCGTGGA 62.831 66.667 21.76 4.18 46.97 4.02
1789 4772 1.470098 GCTTGTTGGTCTGCACCTATG 59.530 52.381 0.00 0.00 44.17 2.23
1790 4773 1.073763 TGCTTGTTGGTCTGCACCTAT 59.926 47.619 0.00 0.00 44.17 2.57
1791 4774 0.472044 TGCTTGTTGGTCTGCACCTA 59.528 50.000 0.00 0.00 44.17 3.08
1792 4775 0.820891 CTGCTTGTTGGTCTGCACCT 60.821 55.000 0.00 0.00 44.17 4.00
1793 4776 1.656441 CTGCTTGTTGGTCTGCACC 59.344 57.895 0.00 0.00 44.10 5.01
1794 4777 1.008079 GCTGCTTGTTGGTCTGCAC 60.008 57.895 0.00 0.00 0.00 4.57
1795 4778 2.195567 GGCTGCTTGTTGGTCTGCA 61.196 57.895 0.00 0.00 0.00 4.41
1796 4779 2.647297 GGCTGCTTGTTGGTCTGC 59.353 61.111 0.00 0.00 0.00 4.26
1797 4780 2.949106 CGGCTGCTTGTTGGTCTG 59.051 61.111 0.00 0.00 0.00 3.51
1798 4781 2.980233 GCGGCTGCTTGTTGGTCT 60.980 61.111 11.21 0.00 38.39 3.85
2004 5009 2.370849 GCGGGAGGACCTTTATTCCATA 59.629 50.000 0.00 0.00 35.33 2.74
2035 5040 3.426117 CTAGACGCACCGCCGGAAT 62.426 63.158 11.71 0.00 0.00 3.01
2064 5069 3.161450 ACACACCTCCACACGCCT 61.161 61.111 0.00 0.00 0.00 5.52
2086 5091 7.664731 AGCAAATCCACCAAAGATAGATCTATG 59.335 37.037 20.05 7.01 35.76 2.23
2088 5093 7.141758 AGCAAATCCACCAAAGATAGATCTA 57.858 36.000 4.57 4.57 35.76 1.98
2115 5120 2.701073 AGACGAACAACGACGAGATT 57.299 45.000 0.00 0.00 45.77 2.40
2187 5192 2.972505 CAGAACAGCAACCGCCGT 60.973 61.111 0.00 0.00 39.83 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.