Multiple sequence alignment - TraesCS7B01G036200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G036200 chr7B 100.000 4007 0 0 1 4007 35092807 35088801 0.000000e+00 7400.0
1 TraesCS7B01G036200 chr7A 95.399 2782 80 16 827 3567 87328286 87325512 0.000000e+00 4385.0
2 TraesCS7B01G036200 chr7A 94.260 453 13 6 3567 4007 87325472 87325021 0.000000e+00 680.0
3 TraesCS7B01G036200 chr7A 83.133 83 6 5 807 883 365106475 365106395 7.190000e-08 69.4
4 TraesCS7B01G036200 chr7D 94.826 2667 104 11 927 3567 85917636 85914978 0.000000e+00 4130.0
5 TraesCS7B01G036200 chr7D 89.693 456 29 10 3567 4007 85914937 85914485 2.090000e-157 566.0
6 TraesCS7B01G036200 chr7D 91.667 108 8 1 934 1040 85924882 85924775 8.970000e-32 148.0
7 TraesCS7B01G036200 chr2B 91.960 796 47 5 1 783 796285829 796286620 0.000000e+00 1099.0
8 TraesCS7B01G036200 chr2B 90.625 64 5 1 827 890 58973106 58973168 2.570000e-12 84.2
9 TraesCS7B01G036200 chr2B 94.872 39 2 0 850 888 232918852 232918890 1.200000e-05 62.1
10 TraesCS7B01G036200 chr4B 90.561 784 66 7 1 783 558037648 558038424 0.000000e+00 1031.0
11 TraesCS7B01G036200 chr6B 90.404 792 58 8 1 781 221741118 221740334 0.000000e+00 1026.0
12 TraesCS7B01G036200 chr3A 89.885 781 73 5 1 779 714952966 714953742 0.000000e+00 1000.0
13 TraesCS7B01G036200 chr3A 78.907 787 136 22 9 776 472898542 472899317 1.280000e-139 507.0
14 TraesCS7B01G036200 chr3A 87.097 62 8 0 832 893 403409326 403409387 2.000000e-08 71.3
15 TraesCS7B01G036200 chr5B 88.761 783 64 13 1 779 268435557 268434795 0.000000e+00 937.0
16 TraesCS7B01G036200 chr2A 84.944 797 98 13 1 781 68010484 68011274 0.000000e+00 787.0
17 TraesCS7B01G036200 chrUn 90.034 592 52 6 1 589 11769778 11770365 0.000000e+00 760.0
18 TraesCS7B01G036200 chrUn 86.111 72 4 3 827 893 30531938 30532008 5.550000e-09 73.1
19 TraesCS7B01G036200 chr1A 87.749 653 66 11 133 781 323209505 323208863 0.000000e+00 750.0
20 TraesCS7B01G036200 chr1A 92.537 67 4 1 827 893 134000434 134000499 1.190000e-15 95.3
21 TraesCS7B01G036200 chr6D 81.416 791 114 24 9 781 134744146 134744921 2.050000e-172 616.0
22 TraesCS7B01G036200 chr6D 79.367 790 131 22 9 781 336993776 336994550 9.860000e-146 527.0
23 TraesCS7B01G036200 chr6D 92.647 68 4 1 827 894 1068815 1068749 3.300000e-16 97.1
24 TraesCS7B01G036200 chr6A 94.872 39 2 0 850 888 8202530 8202492 1.200000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G036200 chr7B 35088801 35092807 4006 True 7400.0 7400 100.0000 1 4007 1 chr7B.!!$R1 4006
1 TraesCS7B01G036200 chr7A 87325021 87328286 3265 True 2532.5 4385 94.8295 827 4007 2 chr7A.!!$R2 3180
2 TraesCS7B01G036200 chr7D 85914485 85917636 3151 True 2348.0 4130 92.2595 927 4007 2 chr7D.!!$R2 3080
3 TraesCS7B01G036200 chr2B 796285829 796286620 791 False 1099.0 1099 91.9600 1 783 1 chr2B.!!$F3 782
4 TraesCS7B01G036200 chr4B 558037648 558038424 776 False 1031.0 1031 90.5610 1 783 1 chr4B.!!$F1 782
5 TraesCS7B01G036200 chr6B 221740334 221741118 784 True 1026.0 1026 90.4040 1 781 1 chr6B.!!$R1 780
6 TraesCS7B01G036200 chr3A 714952966 714953742 776 False 1000.0 1000 89.8850 1 779 1 chr3A.!!$F3 778
7 TraesCS7B01G036200 chr3A 472898542 472899317 775 False 507.0 507 78.9070 9 776 1 chr3A.!!$F2 767
8 TraesCS7B01G036200 chr5B 268434795 268435557 762 True 937.0 937 88.7610 1 779 1 chr5B.!!$R1 778
9 TraesCS7B01G036200 chr2A 68010484 68011274 790 False 787.0 787 84.9440 1 781 1 chr2A.!!$F1 780
10 TraesCS7B01G036200 chrUn 11769778 11770365 587 False 760.0 760 90.0340 1 589 1 chrUn.!!$F1 588
11 TraesCS7B01G036200 chr1A 323208863 323209505 642 True 750.0 750 87.7490 133 781 1 chr1A.!!$R1 648
12 TraesCS7B01G036200 chr6D 134744146 134744921 775 False 616.0 616 81.4160 9 781 1 chr6D.!!$F1 772
13 TraesCS7B01G036200 chr6D 336993776 336994550 774 False 527.0 527 79.3670 9 781 1 chr6D.!!$F2 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 584 0.106918 AAGTGGCCGTTGAAACTGGA 60.107 50.0 0.0 0.00 0.00 3.86 F
800 874 0.107214 TGATTTCGGCCATGGAGGAC 60.107 55.0 18.4 0.59 44.64 3.85 F
1980 2089 0.726827 ACAAGCCGAATGTGCATACG 59.273 50.0 0.0 0.00 0.00 3.06 F
2814 2923 0.099436 GGCGACAGATTCATGCAACC 59.901 55.0 0.0 0.00 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 2209 0.036732 CTCCTTTGCAGTGCCCACTA 59.963 55.00 13.72 0.0 40.20 2.74 R
2127 2236 0.321346 TCAGCTCAAAGGCACGATCA 59.679 50.00 0.00 0.0 34.17 2.92 R
2943 3052 1.017177 GGGCGTGTCTATTGTTCGCA 61.017 55.00 9.79 0.0 46.98 5.10 R
3710 3886 9.950680 CTTGCAACTTCTTACAAGAATTTTCTA 57.049 29.63 4.93 0.0 43.52 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.771356 GCACGACGAGCGGCAGTA 62.771 66.667 0.00 0.00 46.49 2.74
254 265 2.776526 AACTGGTGCCCCACTCCA 60.777 61.111 0.00 0.00 39.62 3.86
446 467 3.829044 CCACGATACCGACGGGCA 61.829 66.667 20.00 5.81 39.50 5.36
449 470 3.879682 CGATACCGACGGGCACGA 61.880 66.667 19.19 0.00 44.68 4.35
520 584 0.106918 AAGTGGCCGTTGAAACTGGA 60.107 50.000 0.00 0.00 0.00 3.86
674 747 4.961511 GAGGTGACCGCACGCACA 62.962 66.667 0.00 0.00 46.09 4.57
706 779 2.970324 GCCGAACACAGGCGAACA 60.970 61.111 0.00 0.00 45.58 3.18
783 857 0.251916 CGGTGGAGTTGGCCTAATGA 59.748 55.000 3.32 0.00 0.00 2.57
784 858 1.134098 CGGTGGAGTTGGCCTAATGAT 60.134 52.381 3.32 0.00 0.00 2.45
785 859 2.683742 CGGTGGAGTTGGCCTAATGATT 60.684 50.000 3.32 0.00 0.00 2.57
786 860 3.365472 GGTGGAGTTGGCCTAATGATTT 58.635 45.455 3.32 0.00 0.00 2.17
787 861 3.381590 GGTGGAGTTGGCCTAATGATTTC 59.618 47.826 3.32 0.00 0.00 2.17
788 862 3.065371 GTGGAGTTGGCCTAATGATTTCG 59.935 47.826 3.32 0.00 0.00 3.46
789 863 2.618709 GGAGTTGGCCTAATGATTTCGG 59.381 50.000 3.32 0.00 0.00 4.30
790 864 2.024414 AGTTGGCCTAATGATTTCGGC 58.976 47.619 3.32 8.99 41.74 5.54
794 868 2.712057 GCCTAATGATTTCGGCCATG 57.288 50.000 2.24 0.00 37.65 3.66
795 869 1.270550 GCCTAATGATTTCGGCCATGG 59.729 52.381 7.63 7.63 37.65 3.66
796 870 2.862541 CCTAATGATTTCGGCCATGGA 58.137 47.619 18.40 0.00 0.00 3.41
797 871 2.816087 CCTAATGATTTCGGCCATGGAG 59.184 50.000 18.40 8.79 0.00 3.86
798 872 1.696063 AATGATTTCGGCCATGGAGG 58.304 50.000 18.40 5.97 41.84 4.30
799 873 0.846015 ATGATTTCGGCCATGGAGGA 59.154 50.000 18.40 8.66 41.22 3.71
800 874 0.107214 TGATTTCGGCCATGGAGGAC 60.107 55.000 18.40 0.59 44.64 3.85
810 884 3.839589 TGGAGGACACCATGGCAT 58.160 55.556 13.04 0.00 34.77 4.40
811 885 1.303948 TGGAGGACACCATGGCATG 59.696 57.895 20.56 20.56 34.77 4.06
823 897 4.489771 GGCATGGCCCGTGTAGCT 62.490 66.667 8.35 0.00 44.06 3.32
824 898 2.504032 GCATGGCCCGTGTAGCTA 59.496 61.111 4.57 0.00 0.00 3.32
825 899 1.595382 GCATGGCCCGTGTAGCTAG 60.595 63.158 4.57 0.00 0.00 3.42
826 900 1.595382 CATGGCCCGTGTAGCTAGC 60.595 63.158 6.62 6.62 0.00 3.42
827 901 3.151958 ATGGCCCGTGTAGCTAGCG 62.152 63.158 9.55 9.85 0.00 4.26
828 902 3.834799 GGCCCGTGTAGCTAGCGT 61.835 66.667 9.55 0.21 0.00 5.07
829 903 2.582498 GCCCGTGTAGCTAGCGTG 60.582 66.667 9.55 6.38 0.00 5.34
830 904 2.582498 CCCGTGTAGCTAGCGTGC 60.582 66.667 9.55 4.19 0.00 5.34
831 905 2.582498 CCGTGTAGCTAGCGTGCC 60.582 66.667 9.55 0.00 0.00 5.01
835 909 1.680989 TGTAGCTAGCGTGCCCTGA 60.681 57.895 9.55 0.00 0.00 3.86
899 973 0.754957 CTGGCCAGGTTTGTCCACAA 60.755 55.000 26.14 0.00 39.02 3.33
918 992 1.005867 CAAGCATTTGCACGGGCTT 60.006 52.632 12.74 11.05 46.71 4.35
934 1008 0.806492 GCTTCGTCTTTCCCCGCTAG 60.806 60.000 0.00 0.00 0.00 3.42
1053 1156 2.093447 CCTCCATTTCGTACTCAAGCCT 60.093 50.000 0.00 0.00 0.00 4.58
1470 1579 1.277580 CCAACTGGATCCTCAGGGCT 61.278 60.000 14.23 0.00 38.98 5.19
1479 1588 3.095163 CTCAGGGCTGGGCTGGAT 61.095 66.667 0.00 0.00 0.00 3.41
1585 1694 1.448540 CTGGTCTTAGGGTGCTGCG 60.449 63.158 0.00 0.00 0.00 5.18
1801 1910 5.055812 GGATTGATGGTTTGTGCAAAAGAA 58.944 37.500 0.00 0.00 31.33 2.52
1908 2017 2.103094 CGATGGGCTCTGTAAGATTGGA 59.897 50.000 0.00 0.00 45.62 3.53
1980 2089 0.726827 ACAAGCCGAATGTGCATACG 59.273 50.000 0.00 0.00 0.00 3.06
2100 2209 4.994852 ACAAACACATACACTACGCTGATT 59.005 37.500 0.00 0.00 0.00 2.57
2116 2225 2.161855 TGATTAGTGGGCACTGCAAAG 58.838 47.619 2.82 0.00 42.52 2.77
2117 2226 1.474077 GATTAGTGGGCACTGCAAAGG 59.526 52.381 2.82 0.00 42.52 3.11
2127 2236 4.605064 TGCAAAGGAGGCAGCTTT 57.395 50.000 0.00 0.00 36.11 3.51
2162 2271 5.527033 TGAGCTGATGAATAAGATGACTCG 58.473 41.667 0.00 0.00 0.00 4.18
2303 2412 9.967346 TGAGCTTGATAAAGTGACATATACTAC 57.033 33.333 0.00 0.00 0.00 2.73
2332 2441 2.825532 ACTGAACACTGCAAACAAGGTT 59.174 40.909 0.00 0.00 0.00 3.50
2352 2461 9.764363 CAAGGTTACATAACATATGCTCTAGAA 57.236 33.333 1.58 0.00 37.92 2.10
2368 2477 4.513442 TCTAGAATTGTTCAACCGGATGG 58.487 43.478 9.46 0.00 42.84 3.51
2472 2581 2.604462 CCAAAAGCTGTTTGACAAGTGC 59.396 45.455 17.53 0.00 0.00 4.40
2758 2867 1.492133 TTGCAGGAGGGGAAGGACAG 61.492 60.000 0.00 0.00 0.00 3.51
2772 2881 1.478510 AGGACAGGTGTTGCTCTATCG 59.521 52.381 0.00 0.00 0.00 2.92
2814 2923 0.099436 GGCGACAGATTCATGCAACC 59.901 55.000 0.00 0.00 0.00 3.77
2943 3052 5.138276 ACTGGCTTCATCAATTCATGCTAT 58.862 37.500 0.00 0.00 0.00 2.97
3052 3161 2.743636 TTGCTTAGTCAGGGAGAACG 57.256 50.000 0.00 0.00 0.00 3.95
3083 3192 4.397103 TGCTTGCAACTGATATGGAAGAAG 59.603 41.667 11.24 0.00 45.71 2.85
3274 3384 3.066900 CCTGACTTCCACTAGTGTATCGG 59.933 52.174 21.18 15.62 0.00 4.18
3393 3523 9.809096 CTCAGCATTGAGTCTAGATTTAAGTTA 57.191 33.333 0.00 0.00 44.74 2.24
3655 3829 6.734137 TGTTTCCTGTGTTGATGTGTAAATC 58.266 36.000 0.00 0.00 0.00 2.17
3660 3836 7.164803 TCCTGTGTTGATGTGTAAATCATGTA 58.835 34.615 0.00 0.00 36.48 2.29
3700 3876 2.589014 GCCAAAAATTCAGCTGTCTCG 58.411 47.619 14.67 0.00 0.00 4.04
3710 3886 1.001406 CAGCTGTCTCGGTTCTCCTTT 59.999 52.381 5.25 0.00 0.00 3.11
3780 3956 5.168569 TGTTATTCTGCGTTCACCTTAGAG 58.831 41.667 0.00 0.00 0.00 2.43
3939 4115 4.968259 TCCACTTAACATAGTTGCACTGT 58.032 39.130 0.00 0.00 0.00 3.55
3940 4116 4.754618 TCCACTTAACATAGTTGCACTGTG 59.245 41.667 2.76 2.76 42.18 3.66
3941 4117 4.754618 CCACTTAACATAGTTGCACTGTGA 59.245 41.667 12.86 0.00 39.34 3.58
3942 4118 5.334105 CCACTTAACATAGTTGCACTGTGAC 60.334 44.000 12.86 1.42 39.34 3.67
3943 4119 4.447724 ACTTAACATAGTTGCACTGTGACG 59.552 41.667 12.86 0.59 39.34 4.35
3944 4120 1.148310 ACATAGTTGCACTGTGACGC 58.852 50.000 12.86 0.00 39.34 5.19
3945 4121 1.147473 CATAGTTGCACTGTGACGCA 58.853 50.000 12.86 0.00 39.34 5.24
3993 4182 3.551863 CGCATCCATAGTTCTCCTGAGTC 60.552 52.174 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.976590 GGCCTCCTAAAGACCGTCCT 60.977 60.000 0.00 0.00 0.00 3.85
131 132 1.152567 CTCCTCCATCGGCTCCTCT 60.153 63.158 0.00 0.00 0.00 3.69
435 456 3.740397 CTGTCGTGCCCGTCGGTA 61.740 66.667 11.06 0.00 35.01 4.02
520 584 2.903350 GGTCGGCCACAAAACGGT 60.903 61.111 0.00 0.00 34.09 4.83
658 731 4.539083 TTGTGCGTGCGGTCACCT 62.539 61.111 0.00 0.00 40.04 4.00
664 737 4.622456 GTTGGGTTGTGCGTGCGG 62.622 66.667 0.00 0.00 0.00 5.69
674 747 2.203294 GGCTGTGTCCGTTGGGTT 60.203 61.111 0.00 0.00 33.83 4.11
693 766 1.227999 CCGATGTGTTCGCCTGTGTT 61.228 55.000 0.00 0.00 46.71 3.32
706 779 2.040544 CCTTTTGAGGCGCCGATGT 61.041 57.895 23.20 2.15 0.00 3.06
783 857 0.394352 GTGTCCTCCATGGCCGAAAT 60.394 55.000 6.96 0.00 35.26 2.17
784 858 1.002624 GTGTCCTCCATGGCCGAAA 60.003 57.895 6.96 0.00 35.26 3.46
785 859 2.668632 GTGTCCTCCATGGCCGAA 59.331 61.111 6.96 0.00 35.26 4.30
786 860 3.399181 GGTGTCCTCCATGGCCGA 61.399 66.667 6.96 1.10 35.26 5.54
787 861 3.047807 ATGGTGTCCTCCATGGCCG 62.048 63.158 6.96 0.00 45.26 6.13
788 862 3.010144 ATGGTGTCCTCCATGGCC 58.990 61.111 6.96 0.00 45.26 5.36
793 867 1.303948 CATGCCATGGTGTCCTCCA 59.696 57.895 14.67 0.46 42.01 3.86
794 868 1.454479 CCATGCCATGGTGTCCTCC 60.454 63.158 15.89 0.00 45.54 4.30
795 869 4.247781 CCATGCCATGGTGTCCTC 57.752 61.111 15.89 0.00 45.54 3.71
807 881 1.595382 CTAGCTACACGGGCCATGC 60.595 63.158 4.39 0.00 0.00 4.06
808 882 1.595382 GCTAGCTACACGGGCCATG 60.595 63.158 7.70 0.00 0.00 3.66
809 883 2.822399 GCTAGCTACACGGGCCAT 59.178 61.111 7.70 0.00 0.00 4.40
810 884 3.833645 CGCTAGCTACACGGGCCA 61.834 66.667 13.93 0.00 0.00 5.36
811 885 3.834799 ACGCTAGCTACACGGGCC 61.835 66.667 13.93 0.00 0.00 5.80
812 886 2.582498 CACGCTAGCTACACGGGC 60.582 66.667 13.93 4.43 0.00 6.13
813 887 2.582498 GCACGCTAGCTACACGGG 60.582 66.667 13.93 11.66 0.00 5.28
814 888 2.582498 GGCACGCTAGCTACACGG 60.582 66.667 13.93 0.00 34.17 4.94
815 889 2.582498 GGGCACGCTAGCTACACG 60.582 66.667 13.93 9.33 34.17 4.49
816 890 1.519455 CAGGGCACGCTAGCTACAC 60.519 63.158 13.93 2.74 34.17 2.90
817 891 1.680989 TCAGGGCACGCTAGCTACA 60.681 57.895 13.93 0.00 34.17 2.74
818 892 1.227002 GTCAGGGCACGCTAGCTAC 60.227 63.158 13.93 1.36 34.17 3.58
819 893 2.423898 GGTCAGGGCACGCTAGCTA 61.424 63.158 13.93 0.00 34.17 3.32
820 894 3.775654 GGTCAGGGCACGCTAGCT 61.776 66.667 13.93 0.00 34.17 3.32
821 895 4.840005 GGGTCAGGGCACGCTAGC 62.840 72.222 4.06 4.06 0.00 3.42
822 896 4.514577 CGGGTCAGGGCACGCTAG 62.515 72.222 0.00 0.00 0.00 3.42
823 897 3.813562 TATACGGGTCAGGGCACGCTA 62.814 57.143 0.00 0.00 39.15 4.26
825 899 2.300850 TTATACGGGTCAGGGCACGC 62.301 60.000 0.00 0.00 39.15 5.34
826 900 0.529119 GTTATACGGGTCAGGGCACG 60.529 60.000 0.00 0.00 41.68 5.34
827 901 0.179065 GGTTATACGGGTCAGGGCAC 60.179 60.000 0.00 0.00 0.00 5.01
828 902 1.339644 GGGTTATACGGGTCAGGGCA 61.340 60.000 0.00 0.00 0.00 5.36
829 903 1.339644 TGGGTTATACGGGTCAGGGC 61.340 60.000 0.00 0.00 0.00 5.19
830 904 0.756903 CTGGGTTATACGGGTCAGGG 59.243 60.000 0.00 0.00 0.00 4.45
831 905 0.756903 CCTGGGTTATACGGGTCAGG 59.243 60.000 0.00 0.00 36.28 3.86
883 957 0.820871 TTGTTGTGGACAAACCTGGC 59.179 50.000 0.00 0.00 44.95 4.85
899 973 1.747325 AAGCCCGTGCAAATGCTTGT 61.747 50.000 14.80 0.00 42.13 3.16
918 992 1.259609 TTTCTAGCGGGGAAAGACGA 58.740 50.000 0.00 0.00 0.00 4.20
1005 1108 2.969238 CCATGGCGATGGCGAGAC 60.969 66.667 15.33 0.00 43.00 3.36
1053 1156 1.217916 TTGTGGTGGAGAAAGGTGGA 58.782 50.000 0.00 0.00 0.00 4.02
1102 1205 2.053865 CGGCATCTGGGGTGCAAAT 61.054 57.895 5.15 0.00 44.25 2.32
1440 1549 2.338620 CAGTTGGCCGTCTCGACA 59.661 61.111 0.00 0.00 0.00 4.35
1479 1588 1.472026 GCGTAGGCGAAATTCCTGGTA 60.472 52.381 0.00 0.00 41.33 3.25
1573 1682 2.931105 TTCCCCGCAGCACCCTAA 60.931 61.111 0.00 0.00 0.00 2.69
1695 1804 1.301623 CACATCCCTAAACCGGCCA 59.698 57.895 0.00 0.00 0.00 5.36
1701 1810 5.153950 AGAACTCAGACACATCCCTAAAC 57.846 43.478 0.00 0.00 0.00 2.01
1801 1910 2.749044 CGCCTGCTTGACATGCCT 60.749 61.111 10.53 0.00 36.64 4.75
1980 2089 3.055094 ACCCTCCAATCATCACAGTGTAC 60.055 47.826 0.00 0.00 0.00 2.90
2100 2209 0.036732 CTCCTTTGCAGTGCCCACTA 59.963 55.000 13.72 0.00 40.20 2.74
2116 2225 1.986575 GCACGATCAAAGCTGCCTCC 61.987 60.000 0.00 0.00 0.00 4.30
2117 2226 1.427020 GCACGATCAAAGCTGCCTC 59.573 57.895 0.00 0.00 0.00 4.70
2127 2236 0.321346 TCAGCTCAAAGGCACGATCA 59.679 50.000 0.00 0.00 34.17 2.92
2269 2378 4.013050 ACTTTATCAAGCTCAAGCCCTTC 58.987 43.478 0.00 0.00 43.38 3.46
2303 2412 6.207928 TGTTTGCAGTGTTCAGTTATGAATG 58.792 36.000 0.00 0.00 46.75 2.67
2368 2477 3.006752 TCAGGATGGCAACCATTTTCAAC 59.993 43.478 16.72 0.00 45.26 3.18
2472 2581 2.288213 TGGCACTAATTCTATCGCGAGG 60.288 50.000 16.66 10.35 0.00 4.63
2772 2881 6.159988 CCGTTTATCCAGTCTATCCAAGATC 58.840 44.000 0.00 0.00 36.36 2.75
2814 2923 5.641209 ACTGAGCTTTCTAACTAGCACATTG 59.359 40.000 0.00 0.00 37.35 2.82
2943 3052 1.017177 GGGCGTGTCTATTGTTCGCA 61.017 55.000 9.79 0.00 46.98 5.10
3042 3151 4.065321 AGCAATTAGATCGTTCTCCCTG 57.935 45.455 0.00 0.00 33.17 4.45
3052 3161 7.040892 TCCATATCAGTTGCAAGCAATTAGATC 60.041 37.037 11.00 0.00 38.28 2.75
3274 3384 2.436417 TGCCATCAAGCAGTTCTTACC 58.564 47.619 0.00 0.00 38.00 2.85
3513 3645 9.762381 ATCTTGAGAAGTAGGAATATAGGGTAG 57.238 37.037 0.00 0.00 0.00 3.18
3544 3677 5.292834 CGGCTATGAATAAGCATACCATGAG 59.707 44.000 0.00 0.00 41.93 2.90
3710 3886 9.950680 CTTGCAACTTCTTACAAGAATTTTCTA 57.049 29.630 4.93 0.00 43.52 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.