Multiple sequence alignment - TraesCS7B01G035300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G035300 chr7B 100.000 7800 0 0 1 7800 34489997 34497796 0.000000e+00 14404.0
1 TraesCS7B01G035300 chr7B 94.134 716 31 6 7090 7800 34516121 34516830 0.000000e+00 1079.0
2 TraesCS7B01G035300 chr7B 91.720 314 15 8 428 732 22062678 22062367 7.230000e-115 425.0
3 TraesCS7B01G035300 chr7B 84.778 427 44 16 489 905 34424307 34424722 7.290000e-110 409.0
4 TraesCS7B01G035300 chr7B 87.500 280 30 5 456 731 2943736 2943458 1.260000e-82 318.0
5 TraesCS7B01G035300 chr7B 80.717 446 49 28 7375 7800 34515023 34515451 5.880000e-81 313.0
6 TraesCS7B01G035300 chr7B 88.163 245 13 4 74 313 34420254 34420487 2.140000e-70 278.0
7 TraesCS7B01G035300 chr7B 80.244 410 43 18 7412 7791 34821654 34822055 2.770000e-69 274.0
8 TraesCS7B01G035300 chr7B 83.843 229 9 10 7149 7375 34514865 34515067 7.990000e-45 193.0
9 TraesCS7B01G035300 chr7B 96.341 82 3 0 1 82 64695545 64695626 1.370000e-27 135.0
10 TraesCS7B01G035300 chr7B 97.468 79 2 0 1 79 73586317 73586239 1.370000e-27 135.0
11 TraesCS7B01G035300 chr7B 94.521 73 4 0 7728 7800 34822094 34822166 6.400000e-21 113.0
12 TraesCS7B01G035300 chr7A 93.403 3547 186 19 3710 7217 85961042 85964579 0.000000e+00 5210.0
13 TraesCS7B01G035300 chr7A 92.532 2156 93 12 1586 3709 85958886 85961005 0.000000e+00 3027.0
14 TraesCS7B01G035300 chr7A 86.566 923 70 24 377 1273 85957746 85958640 0.000000e+00 968.0
15 TraesCS7B01G035300 chr7A 87.414 580 35 13 7223 7797 85964622 85965168 3.970000e-177 632.0
16 TraesCS7B01G035300 chr7A 95.374 281 11 2 453 731 80067711 80067431 5.550000e-121 446.0
17 TraesCS7B01G035300 chr7A 82.524 412 40 16 7405 7791 86227606 86228010 4.510000e-87 333.0
18 TraesCS7B01G035300 chr7A 87.356 261 27 6 477 733 64729357 64729099 2.130000e-75 294.0
19 TraesCS7B01G035300 chr7A 86.577 149 11 7 285 424 85957605 85957753 1.050000e-33 156.0
20 TraesCS7B01G035300 chr7A 95.238 63 3 0 7729 7791 86228050 86228112 4.980000e-17 100.0
21 TraesCS7B01G035300 chr7A 97.561 41 1 0 7331 7371 85964772 85964812 3.900000e-08 71.3
22 TraesCS7B01G035300 chr7D 96.133 2198 85 0 3710 5907 84799308 84801505 0.000000e+00 3589.0
23 TraesCS7B01G035300 chr7D 95.932 1893 60 9 1826 3710 84797389 84799272 0.000000e+00 3053.0
24 TraesCS7B01G035300 chr7D 91.809 1929 121 16 5891 7800 84801522 84803432 0.000000e+00 2652.0
25 TraesCS7B01G035300 chr7D 86.301 1241 95 44 74 1273 84795745 84796951 0.000000e+00 1280.0
26 TraesCS7B01G035300 chr7D 91.167 317 18 8 428 739 75930944 75930633 9.360000e-114 422.0
27 TraesCS7B01G035300 chr7D 84.901 404 28 14 7405 7783 85206667 85207062 2.050000e-100 377.0
28 TraesCS7B01G035300 chr7D 84.524 336 38 12 403 731 60440609 60440281 3.510000e-83 320.0
29 TraesCS7B01G035300 chr7D 84.746 295 39 5 439 731 60579852 60579562 2.750000e-74 291.0
30 TraesCS7B01G035300 chr7D 90.833 120 10 1 1157 1275 126645011 126645130 8.100000e-35 159.0
31 TraesCS7B01G035300 chr7D 85.000 140 16 3 1586 1725 84797252 84797386 3.800000e-28 137.0
32 TraesCS7B01G035300 chr5D 92.103 1203 64 17 1586 2777 395262025 395263207 0.000000e+00 1666.0
33 TraesCS7B01G035300 chr5D 94.186 86 3 2 1 86 322385020 322385103 6.350000e-26 130.0
34 TraesCS7B01G035300 chr5B 93.878 735 34 5 2047 2777 475688791 475689518 0.000000e+00 1098.0
35 TraesCS7B01G035300 chr5B 87.156 436 39 12 1586 2017 475688373 475688795 5.470000e-131 479.0
36 TraesCS7B01G035300 chr2B 96.471 85 3 0 1 85 751281229 751281313 2.930000e-29 141.0
37 TraesCS7B01G035300 chr4B 96.386 83 3 0 1 83 172773975 172773893 3.800000e-28 137.0
38 TraesCS7B01G035300 chr4B 97.436 78 2 0 1 78 28073000 28073077 4.910000e-27 134.0
39 TraesCS7B01G035300 chr4B 90.909 99 5 3 1 96 166760578 166760675 6.350000e-26 130.0
40 TraesCS7B01G035300 chr3B 97.500 80 2 0 1 80 267227367 267227288 3.800000e-28 137.0
41 TraesCS7B01G035300 chr6B 97.468 79 2 0 1 79 707006702 707006624 1.370000e-27 135.0
42 TraesCS7B01G035300 chr2A 86.538 52 6 1 7174 7225 704759915 704759865 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G035300 chr7B 34489997 34497796 7799 False 14404.000000 14404 100.000000 1 7800 1 chr7B.!!$F1 7799
1 TraesCS7B01G035300 chr7B 34514865 34516830 1965 False 528.333333 1079 86.231333 7090 7800 3 chr7B.!!$F4 710
2 TraesCS7B01G035300 chr7B 34420254 34424722 4468 False 343.500000 409 86.470500 74 905 2 chr7B.!!$F3 831
3 TraesCS7B01G035300 chr7A 85957605 85965168 7563 False 1677.383333 5210 90.675500 285 7797 6 chr7A.!!$F1 7512
4 TraesCS7B01G035300 chr7A 86227606 86228112 506 False 216.500000 333 88.881000 7405 7791 2 chr7A.!!$F2 386
5 TraesCS7B01G035300 chr7D 84795745 84803432 7687 False 2142.200000 3589 91.035000 74 7800 5 chr7D.!!$F3 7726
6 TraesCS7B01G035300 chr5D 395262025 395263207 1182 False 1666.000000 1666 92.103000 1586 2777 1 chr5D.!!$F2 1191
7 TraesCS7B01G035300 chr5B 475688373 475689518 1145 False 788.500000 1098 90.517000 1586 2777 2 chr5B.!!$F1 1191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 4660 0.036671 CGACTGGACCAACTAACCCC 60.037 60.000 0.00 0.00 0.00 4.95 F
1300 5014 0.110238 CGCACCCATTTCGTCAGTTG 60.110 55.000 0.00 0.00 0.00 3.16 F
1419 5133 0.112995 TTCAGTCCAGCATTGCCCTT 59.887 50.000 4.70 0.00 0.00 3.95 F
1455 5169 0.240145 ATGTCGTTCTGCTTCGTCGA 59.760 50.000 0.00 0.00 0.00 4.20 F
1458 5172 0.240145 TCGTTCTGCTTCGTCGATGT 59.760 50.000 4.21 0.00 0.00 3.06 F
1464 5178 0.317160 TGCTTCGTCGATGTCCTTGT 59.683 50.000 4.21 0.00 0.00 3.16 F
1566 5282 0.608130 TTGCAGTATCAGGCTGACGT 59.392 50.000 21.37 7.69 36.12 4.34 F
1776 5547 0.757935 ATGCATGCCCCTGAACCATC 60.758 55.000 16.68 0.00 0.00 3.51 F
1819 5590 1.262683 GCGCTGAGCCATTCATCTAAC 59.737 52.381 0.00 0.00 40.81 2.34 F
2457 6236 2.424793 ACTGAAGGGGTTTACCTCCAA 58.575 47.619 0.00 0.00 40.87 3.53 F
4118 8001 2.642311 TCCTATTGAACCCAGAGCACAA 59.358 45.455 0.00 0.00 0.00 3.33 F
6271 10218 0.829990 TCTGGCTCAACACTGTCACA 59.170 50.000 0.00 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2457 6236 0.767375 ACACAGATGTCTTGCAGGGT 59.233 50.000 0.00 0.00 31.55 4.34 R
2632 6413 2.050144 TCTCAAGGAAGAGTGTTGCCT 58.950 47.619 0.00 0.00 36.97 4.75 R
2951 6735 3.198635 TCATGGTAGCCTTGAGAAAGAGG 59.801 47.826 0.00 0.00 33.63 3.69 R
3377 7162 3.743521 TCAGTGCTACACAGAAAAGCAT 58.256 40.909 0.00 0.00 46.99 3.79 R
3602 7412 2.995466 ACACAAGGATCATTGCAACG 57.005 45.000 19.47 8.61 33.28 4.10 R
3635 7445 5.934043 ACGGTACAATAAGAGGTTGGTAAAC 59.066 40.000 0.00 0.00 35.40 2.01 R
3877 7760 6.313519 TCAGTAAATAATTGCTCAGGGACT 57.686 37.500 0.00 0.00 29.64 3.85 R
4061 7944 6.103205 TCCCCTGATCCATATTTTCTAAAGCT 59.897 38.462 0.00 0.00 0.00 3.74 R
4274 8157 3.385384 GGCCCAAAAGCAGCCTCC 61.385 66.667 0.00 0.00 43.62 4.30 R
4317 8200 3.127721 GGCTTGTTCTGATTAGCAAGTCC 59.872 47.826 0.00 0.00 40.09 3.85 R
6562 10509 0.485543 TCCCTCTACCTGACACCACA 59.514 55.000 0.00 0.00 0.00 4.17 R
7702 11725 1.478510 AGGTGCTACTGAATCGAGTGG 59.521 52.381 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.871238 ATTCACTCATTTTACTTCGTATGTAGT 57.129 29.630 0.00 0.00 0.00 2.73
29 30 8.906636 TCACTCATTTTACTTCGTATGTAGTC 57.093 34.615 0.00 0.00 0.00 2.59
30 31 8.517056 TCACTCATTTTACTTCGTATGTAGTCA 58.483 33.333 0.00 0.00 0.00 3.41
31 32 8.584600 CACTCATTTTACTTCGTATGTAGTCAC 58.415 37.037 0.00 0.00 0.00 3.67
34 35 9.135843 TCATTTTACTTCGTATGTAGTCACTTG 57.864 33.333 0.00 0.00 0.00 3.16
35 36 8.922676 CATTTTACTTCGTATGTAGTCACTTGT 58.077 33.333 0.00 0.00 0.00 3.16
36 37 8.876275 TTTTACTTCGTATGTAGTCACTTGTT 57.124 30.769 0.00 0.00 0.00 2.83
37 38 9.964303 TTTTACTTCGTATGTAGTCACTTGTTA 57.036 29.630 0.00 0.00 0.00 2.41
38 39 9.964303 TTTACTTCGTATGTAGTCACTTGTTAA 57.036 29.630 0.00 0.00 0.00 2.01
39 40 9.964303 TTACTTCGTATGTAGTCACTTGTTAAA 57.036 29.630 0.00 0.00 0.00 1.52
40 41 8.876275 ACTTCGTATGTAGTCACTTGTTAAAA 57.124 30.769 0.00 0.00 0.00 1.52
42 43 9.953825 CTTCGTATGTAGTCACTTGTTAAAATC 57.046 33.333 0.00 0.00 0.00 2.17
43 44 9.701098 TTCGTATGTAGTCACTTGTTAAAATCT 57.299 29.630 0.00 0.00 0.00 2.40
44 45 9.350357 TCGTATGTAGTCACTTGTTAAAATCTC 57.650 33.333 0.00 0.00 0.00 2.75
45 46 9.355215 CGTATGTAGTCACTTGTTAAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
72 73 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
73 74 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
74 75 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
75 76 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
78 79 7.767659 ACAAATATTTAGGAACGGAGGAAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
95 96 5.009110 GGAAGTACTAGTATCCCGTACCAAC 59.991 48.000 5.75 0.00 35.33 3.77
100 101 1.208776 AGTATCCCGTACCAACTTGCC 59.791 52.381 0.00 0.00 33.58 4.52
114 115 4.941263 CCAACTTGCCACTACTAATAAGCA 59.059 41.667 0.00 0.00 0.00 3.91
131 132 3.288809 AGCAAAGATCAAACGGAAAGC 57.711 42.857 0.00 0.00 0.00 3.51
147 148 3.044305 GCGGCCGCTGGATGATAC 61.044 66.667 41.71 9.84 38.26 2.24
148 149 2.737180 CGGCCGCTGGATGATACT 59.263 61.111 14.67 0.00 0.00 2.12
149 150 1.964448 CGGCCGCTGGATGATACTA 59.036 57.895 14.67 0.00 0.00 1.82
150 151 0.317160 CGGCCGCTGGATGATACTAA 59.683 55.000 14.67 0.00 0.00 2.24
154 160 2.802057 GCCGCTGGATGATACTAAACGT 60.802 50.000 0.00 0.00 0.00 3.99
162 168 4.098960 GGATGATACTAAACGTCCTGGACA 59.901 45.833 25.42 6.06 38.65 4.02
313 336 4.022413 TCTCTCCTTCGTTCTCTTCTCA 57.978 45.455 0.00 0.00 0.00 3.27
315 338 5.013547 TCTCTCCTTCGTTCTCTTCTCAAT 58.986 41.667 0.00 0.00 0.00 2.57
316 339 5.065704 TCTCCTTCGTTCTCTTCTCAATG 57.934 43.478 0.00 0.00 0.00 2.82
318 341 4.810790 TCCTTCGTTCTCTTCTCAATGTC 58.189 43.478 0.00 0.00 0.00 3.06
319 342 3.929610 CCTTCGTTCTCTTCTCAATGTCC 59.070 47.826 0.00 0.00 0.00 4.02
320 343 3.594603 TCGTTCTCTTCTCAATGTCCC 57.405 47.619 0.00 0.00 0.00 4.46
321 344 2.897326 TCGTTCTCTTCTCAATGTCCCA 59.103 45.455 0.00 0.00 0.00 4.37
323 346 4.020218 TCGTTCTCTTCTCAATGTCCCAAT 60.020 41.667 0.00 0.00 0.00 3.16
325 348 5.182001 CGTTCTCTTCTCAATGTCCCAATTT 59.818 40.000 0.00 0.00 0.00 1.82
390 422 1.105167 TATCAGGCCCACGGTACTCG 61.105 60.000 0.00 0.00 45.88 4.18
531 4225 1.542187 GGGGCGAGCGGGTATAAGAT 61.542 60.000 0.00 0.00 0.00 2.40
751 4450 3.971245 ACCTCTGACCTGATTGAACTC 57.029 47.619 0.00 0.00 0.00 3.01
755 4454 2.902486 TCTGACCTGATTGAACTCTGCT 59.098 45.455 0.00 0.00 0.00 4.24
758 4457 4.763073 TGACCTGATTGAACTCTGCTATG 58.237 43.478 0.00 0.00 0.00 2.23
759 4458 4.125703 GACCTGATTGAACTCTGCTATGG 58.874 47.826 0.00 0.00 0.00 2.74
773 4473 4.906065 TGCTATGGCATGATTCTGAAAC 57.094 40.909 10.98 0.00 44.28 2.78
775 4475 5.683681 TGCTATGGCATGATTCTGAAACTA 58.316 37.500 10.98 0.00 44.28 2.24
776 4476 6.121590 TGCTATGGCATGATTCTGAAACTAA 58.878 36.000 10.98 0.00 44.28 2.24
780 4480 6.688637 TGGCATGATTCTGAAACTAAGATG 57.311 37.500 0.00 0.00 0.00 2.90
781 4481 5.066893 TGGCATGATTCTGAAACTAAGATGC 59.933 40.000 0.00 10.32 0.00 3.91
783 4483 6.238953 GGCATGATTCTGAAACTAAGATGCAT 60.239 38.462 16.67 0.00 30.85 3.96
784 4484 7.201145 GCATGATTCTGAAACTAAGATGCATT 58.799 34.615 0.00 0.00 30.08 3.56
815 4525 7.402811 TTTTCTGTCAACGTGTATACTCTTG 57.597 36.000 4.17 7.40 0.00 3.02
823 4533 2.733517 GTGTATACTCTTGAGCGAGCC 58.266 52.381 4.17 0.00 34.35 4.70
850 4560 2.416701 GGGATACGTACGGTCGGAAAAA 60.417 50.000 21.06 0.00 34.94 1.94
852 4562 2.058913 TACGTACGGTCGGAAAAACC 57.941 50.000 21.06 0.00 34.94 3.27
880 4590 3.372822 CCATCTAAACGAAAAGCCGCTTA 59.627 43.478 5.94 0.00 0.00 3.09
899 4609 2.034879 CCCTGCTGTGTTGGCGTAG 61.035 63.158 0.00 0.00 0.00 3.51
932 4646 0.308068 ATACGCATCTCCGACGACTG 59.692 55.000 0.00 0.00 0.00 3.51
941 4655 0.250858 TCCGACGACTGGACCAACTA 60.251 55.000 0.00 0.00 0.00 2.24
942 4656 0.599558 CCGACGACTGGACCAACTAA 59.400 55.000 0.00 0.00 0.00 2.24
943 4657 1.668047 CCGACGACTGGACCAACTAAC 60.668 57.143 0.00 0.00 0.00 2.34
944 4658 1.668047 CGACGACTGGACCAACTAACC 60.668 57.143 0.00 0.00 0.00 2.85
945 4659 0.683412 ACGACTGGACCAACTAACCC 59.317 55.000 0.00 0.00 0.00 4.11
946 4660 0.036671 CGACTGGACCAACTAACCCC 60.037 60.000 0.00 0.00 0.00 4.95
949 4663 1.854280 ACTGGACCAACTAACCCCAAA 59.146 47.619 0.00 0.00 0.00 3.28
951 4665 3.116900 ACTGGACCAACTAACCCCAAATT 60.117 43.478 0.00 0.00 0.00 1.82
1193 4907 4.873129 CGCGGACCATGACGAGGG 62.873 72.222 0.00 0.00 0.00 4.30
1260 4974 0.750546 CCGTCCTCGTCTCCACCATA 60.751 60.000 0.00 0.00 35.01 2.74
1261 4975 0.381089 CGTCCTCGTCTCCACCATAC 59.619 60.000 0.00 0.00 0.00 2.39
1269 4983 1.413077 GTCTCCACCATACCAGGTAGC 59.587 57.143 5.31 0.00 40.77 3.58
1273 4987 0.530650 CACCATACCAGGTAGCAGCG 60.531 60.000 5.31 0.00 40.77 5.18
1275 4989 1.951130 CATACCAGGTAGCAGCGCG 60.951 63.158 0.00 0.00 0.00 6.86
1276 4990 3.151958 ATACCAGGTAGCAGCGCGG 62.152 63.158 8.83 2.11 0.00 6.46
1293 5007 4.114997 GCACCCGCACCCATTTCG 62.115 66.667 0.00 0.00 38.36 3.46
1294 5008 2.671619 CACCCGCACCCATTTCGT 60.672 61.111 0.00 0.00 0.00 3.85
1295 5009 2.359478 ACCCGCACCCATTTCGTC 60.359 61.111 0.00 0.00 0.00 4.20
1296 5010 2.359354 CCCGCACCCATTTCGTCA 60.359 61.111 0.00 0.00 0.00 4.35
1298 5012 1.671054 CCGCACCCATTTCGTCAGT 60.671 57.895 0.00 0.00 0.00 3.41
1300 5014 0.110238 CGCACCCATTTCGTCAGTTG 60.110 55.000 0.00 0.00 0.00 3.16
1301 5015 1.234821 GCACCCATTTCGTCAGTTGA 58.765 50.000 0.00 0.00 0.00 3.18
1306 5020 3.253188 ACCCATTTCGTCAGTTGAATGTG 59.747 43.478 0.00 0.00 0.00 3.21
1307 5021 3.236816 CCATTTCGTCAGTTGAATGTGC 58.763 45.455 0.00 0.00 0.00 4.57
1308 5022 3.058016 CCATTTCGTCAGTTGAATGTGCT 60.058 43.478 0.00 0.00 0.00 4.40
1309 5023 3.607422 TTTCGTCAGTTGAATGTGCTG 57.393 42.857 0.00 0.00 0.00 4.41
1310 5024 2.238942 TCGTCAGTTGAATGTGCTGT 57.761 45.000 0.00 0.00 0.00 4.40
1311 5025 2.560504 TCGTCAGTTGAATGTGCTGTT 58.439 42.857 0.00 0.00 0.00 3.16
1314 5028 1.872952 TCAGTTGAATGTGCTGTTCGG 59.127 47.619 0.00 0.00 0.00 4.30
1318 5032 1.234821 TGAATGTGCTGTTCGGGTTC 58.765 50.000 0.00 0.00 0.00 3.62
1319 5033 1.202758 TGAATGTGCTGTTCGGGTTCT 60.203 47.619 0.00 0.00 0.00 3.01
1323 5037 3.423154 GCTGTTCGGGTTCTGCCG 61.423 66.667 0.00 0.00 38.44 5.69
1324 5038 2.742372 CTGTTCGGGTTCTGCCGG 60.742 66.667 0.00 0.00 38.44 6.13
1329 5043 4.530857 CGGGTTCTGCCGGGCTAG 62.531 72.222 21.46 15.39 38.44 3.42
1331 5045 4.176752 GGTTCTGCCGGGCTAGGG 62.177 72.222 21.46 7.94 0.00 3.53
1332 5046 3.400054 GTTCTGCCGGGCTAGGGT 61.400 66.667 21.46 0.00 0.00 4.34
1333 5047 2.609610 TTCTGCCGGGCTAGGGTT 60.610 61.111 21.46 0.00 0.00 4.11
1334 5048 2.966732 TTCTGCCGGGCTAGGGTTG 61.967 63.158 21.46 2.03 0.00 3.77
1335 5049 4.489771 CTGCCGGGCTAGGGTTGG 62.490 72.222 21.46 0.00 0.00 3.77
1337 5051 3.723922 GCCGGGCTAGGGTTGGAA 61.724 66.667 12.87 0.00 0.00 3.53
1339 5053 1.993391 CCGGGCTAGGGTTGGAAGA 60.993 63.158 0.00 0.00 0.00 2.87
1340 5054 1.559065 CCGGGCTAGGGTTGGAAGAA 61.559 60.000 0.00 0.00 0.00 2.52
1342 5056 0.394488 GGGCTAGGGTTGGAAGAAGC 60.394 60.000 0.00 0.00 0.00 3.86
1343 5057 0.394488 GGCTAGGGTTGGAAGAAGCC 60.394 60.000 0.00 0.00 42.40 4.35
1344 5058 0.744771 GCTAGGGTTGGAAGAAGCCG 60.745 60.000 0.00 0.00 42.33 5.52
1345 5059 0.902531 CTAGGGTTGGAAGAAGCCGA 59.097 55.000 0.00 0.00 42.33 5.54
1347 5061 1.377333 GGGTTGGAAGAAGCCGAGG 60.377 63.158 0.00 0.00 0.00 4.63
1348 5062 1.375326 GGTTGGAAGAAGCCGAGGT 59.625 57.895 0.00 0.00 0.00 3.85
1349 5063 0.611714 GGTTGGAAGAAGCCGAGGTA 59.388 55.000 0.00 0.00 0.00 3.08
1351 5065 1.549170 GTTGGAAGAAGCCGAGGTAGA 59.451 52.381 0.00 0.00 0.00 2.59
1352 5066 1.933021 TGGAAGAAGCCGAGGTAGAA 58.067 50.000 0.00 0.00 0.00 2.10
1353 5067 2.467880 TGGAAGAAGCCGAGGTAGAAT 58.532 47.619 0.00 0.00 0.00 2.40
1354 5068 2.168521 TGGAAGAAGCCGAGGTAGAATG 59.831 50.000 0.00 0.00 0.00 2.67
1357 5071 1.137872 AGAAGCCGAGGTAGAATGCAG 59.862 52.381 0.00 0.00 0.00 4.41
1358 5072 1.137086 GAAGCCGAGGTAGAATGCAGA 59.863 52.381 0.00 0.00 0.00 4.26
1359 5073 1.418334 AGCCGAGGTAGAATGCAGAT 58.582 50.000 0.00 0.00 0.00 2.90
1360 5074 2.598565 AGCCGAGGTAGAATGCAGATA 58.401 47.619 0.00 0.00 0.00 1.98
1362 5076 2.928731 GCCGAGGTAGAATGCAGATAGC 60.929 54.545 0.00 0.00 45.96 2.97
1363 5077 2.353208 CCGAGGTAGAATGCAGATAGCC 60.353 54.545 0.00 0.00 44.83 3.93
1365 5079 1.620819 AGGTAGAATGCAGATAGCCCG 59.379 52.381 0.00 0.00 44.83 6.13
1367 5081 2.037251 GGTAGAATGCAGATAGCCCGAA 59.963 50.000 0.00 0.00 44.83 4.30
1368 5082 2.540265 AGAATGCAGATAGCCCGAAG 57.460 50.000 0.00 0.00 44.83 3.79
1369 5083 2.042464 AGAATGCAGATAGCCCGAAGA 58.958 47.619 0.00 0.00 44.83 2.87
1370 5084 2.636893 AGAATGCAGATAGCCCGAAGAT 59.363 45.455 0.00 0.00 44.83 2.40
1372 5086 0.315251 TGCAGATAGCCCGAAGATCG 59.685 55.000 0.00 0.00 44.83 3.69
1375 5089 2.353208 GCAGATAGCCCGAAGATCGATT 60.353 50.000 0.00 0.00 40.30 3.34
1377 5091 4.618460 GCAGATAGCCCGAAGATCGATTTA 60.618 45.833 0.00 0.00 40.30 1.40
1379 5093 4.767928 AGATAGCCCGAAGATCGATTTAGT 59.232 41.667 0.00 0.00 43.74 2.24
1381 5095 3.458189 AGCCCGAAGATCGATTTAGTTG 58.542 45.455 0.00 0.00 43.74 3.16
1382 5096 3.118738 AGCCCGAAGATCGATTTAGTTGT 60.119 43.478 0.00 0.00 43.74 3.32
1383 5097 3.245519 GCCCGAAGATCGATTTAGTTGTC 59.754 47.826 0.00 0.00 43.74 3.18
1384 5098 4.430007 CCCGAAGATCGATTTAGTTGTCA 58.570 43.478 0.00 0.00 43.74 3.58
1385 5099 4.504461 CCCGAAGATCGATTTAGTTGTCAG 59.496 45.833 0.00 0.00 43.74 3.51
1386 5100 5.340803 CCGAAGATCGATTTAGTTGTCAGA 58.659 41.667 0.00 0.00 43.74 3.27
1387 5101 5.230306 CCGAAGATCGATTTAGTTGTCAGAC 59.770 44.000 0.00 0.00 43.74 3.51
1388 5102 6.030849 CGAAGATCGATTTAGTTGTCAGACT 58.969 40.000 0.00 0.00 43.74 3.24
1389 5103 7.187480 CGAAGATCGATTTAGTTGTCAGACTA 58.813 38.462 0.00 0.00 43.74 2.59
1390 5104 7.858382 CGAAGATCGATTTAGTTGTCAGACTAT 59.142 37.037 0.00 0.00 43.74 2.12
1391 5105 9.522804 GAAGATCGATTTAGTTGTCAGACTATT 57.477 33.333 0.00 0.00 32.51 1.73
1392 5106 8.864069 AGATCGATTTAGTTGTCAGACTATTG 57.136 34.615 0.00 0.00 32.51 1.90
1394 5108 7.812309 TCGATTTAGTTGTCAGACTATTGTG 57.188 36.000 1.31 0.00 32.51 3.33
1395 5109 6.310467 TCGATTTAGTTGTCAGACTATTGTGC 59.690 38.462 1.31 0.00 32.51 4.57
1396 5110 5.839262 TTTAGTTGTCAGACTATTGTGCG 57.161 39.130 1.31 0.00 32.51 5.34
1397 5111 3.386768 AGTTGTCAGACTATTGTGCGT 57.613 42.857 1.31 0.00 0.00 5.24
1398 5112 3.728845 AGTTGTCAGACTATTGTGCGTT 58.271 40.909 1.31 0.00 0.00 4.84
1399 5113 3.494626 AGTTGTCAGACTATTGTGCGTTG 59.505 43.478 1.31 0.00 0.00 4.10
1400 5114 3.106242 TGTCAGACTATTGTGCGTTGT 57.894 42.857 1.31 0.00 0.00 3.32
1401 5115 3.462982 TGTCAGACTATTGTGCGTTGTT 58.537 40.909 1.31 0.00 0.00 2.83
1402 5116 3.493129 TGTCAGACTATTGTGCGTTGTTC 59.507 43.478 1.31 0.00 0.00 3.18
1403 5117 3.493129 GTCAGACTATTGTGCGTTGTTCA 59.507 43.478 0.00 0.00 0.00 3.18
1404 5118 3.740832 TCAGACTATTGTGCGTTGTTCAG 59.259 43.478 0.00 0.00 0.00 3.02
1405 5119 3.494626 CAGACTATTGTGCGTTGTTCAGT 59.505 43.478 0.00 0.00 0.00 3.41
1406 5120 3.741344 AGACTATTGTGCGTTGTTCAGTC 59.259 43.478 0.00 0.00 33.08 3.51
1407 5121 2.806244 ACTATTGTGCGTTGTTCAGTCC 59.194 45.455 0.00 0.00 0.00 3.85
1408 5122 1.674359 ATTGTGCGTTGTTCAGTCCA 58.326 45.000 0.00 0.00 0.00 4.02
1409 5123 1.013596 TTGTGCGTTGTTCAGTCCAG 58.986 50.000 0.00 0.00 0.00 3.86
1410 5124 1.279840 GTGCGTTGTTCAGTCCAGC 59.720 57.895 0.00 0.00 0.00 4.85
1411 5125 1.153269 TGCGTTGTTCAGTCCAGCA 60.153 52.632 0.00 0.00 0.00 4.41
1412 5126 0.534877 TGCGTTGTTCAGTCCAGCAT 60.535 50.000 0.00 0.00 0.00 3.79
1413 5127 0.593128 GCGTTGTTCAGTCCAGCATT 59.407 50.000 0.00 0.00 0.00 3.56
1414 5128 1.664016 GCGTTGTTCAGTCCAGCATTG 60.664 52.381 0.00 0.00 0.00 2.82
1415 5129 1.664016 CGTTGTTCAGTCCAGCATTGC 60.664 52.381 0.00 0.00 0.00 3.56
1416 5130 0.961019 TTGTTCAGTCCAGCATTGCC 59.039 50.000 4.70 0.00 0.00 4.52
1417 5131 0.895100 TGTTCAGTCCAGCATTGCCC 60.895 55.000 4.70 0.00 0.00 5.36
1418 5132 0.610232 GTTCAGTCCAGCATTGCCCT 60.610 55.000 4.70 0.00 0.00 5.19
1419 5133 0.112995 TTCAGTCCAGCATTGCCCTT 59.887 50.000 4.70 0.00 0.00 3.95
1420 5134 0.609957 TCAGTCCAGCATTGCCCTTG 60.610 55.000 4.70 0.00 0.00 3.61
1421 5135 1.304713 AGTCCAGCATTGCCCTTGG 60.305 57.895 4.70 7.05 0.00 3.61
1422 5136 2.037687 TCCAGCATTGCCCTTGGG 59.962 61.111 13.64 0.32 0.00 4.12
1433 5147 1.078426 CCCTTGGGGCTAACACTCG 60.078 63.158 0.00 0.00 35.35 4.18
1434 5148 1.745489 CCTTGGGGCTAACACTCGC 60.745 63.158 0.00 0.00 0.00 5.03
1435 5149 1.296715 CTTGGGGCTAACACTCGCT 59.703 57.895 0.00 0.00 0.00 4.93
1436 5150 0.535335 CTTGGGGCTAACACTCGCTA 59.465 55.000 0.00 0.00 0.00 4.26
1437 5151 1.139058 CTTGGGGCTAACACTCGCTAT 59.861 52.381 0.00 0.00 0.00 2.97
1438 5152 0.464036 TGGGGCTAACACTCGCTATG 59.536 55.000 0.00 0.00 0.00 2.23
1439 5153 0.464452 GGGGCTAACACTCGCTATGT 59.536 55.000 0.00 0.00 0.00 2.29
1440 5154 1.538419 GGGGCTAACACTCGCTATGTC 60.538 57.143 0.00 0.00 0.00 3.06
1441 5155 1.478137 GGCTAACACTCGCTATGTCG 58.522 55.000 0.00 0.00 0.00 4.35
1442 5156 1.202268 GGCTAACACTCGCTATGTCGT 60.202 52.381 0.00 0.00 0.00 4.34
1443 5157 2.527100 GCTAACACTCGCTATGTCGTT 58.473 47.619 0.00 0.00 0.00 3.85
1444 5158 2.530700 GCTAACACTCGCTATGTCGTTC 59.469 50.000 0.00 0.00 0.00 3.95
1445 5159 3.731264 GCTAACACTCGCTATGTCGTTCT 60.731 47.826 0.00 0.00 0.00 3.01
1446 5160 2.264109 ACACTCGCTATGTCGTTCTG 57.736 50.000 0.00 0.00 0.00 3.02
1447 5161 0.917259 CACTCGCTATGTCGTTCTGC 59.083 55.000 0.00 0.00 0.00 4.26
1448 5162 0.811915 ACTCGCTATGTCGTTCTGCT 59.188 50.000 0.00 0.00 0.00 4.24
1449 5163 1.202582 ACTCGCTATGTCGTTCTGCTT 59.797 47.619 0.00 0.00 0.00 3.91
1450 5164 1.849219 CTCGCTATGTCGTTCTGCTTC 59.151 52.381 0.00 0.00 0.00 3.86
1451 5165 0.567968 CGCTATGTCGTTCTGCTTCG 59.432 55.000 0.00 0.00 0.00 3.79
1452 5166 1.630148 GCTATGTCGTTCTGCTTCGT 58.370 50.000 0.00 0.00 0.00 3.85
1453 5167 1.584308 GCTATGTCGTTCTGCTTCGTC 59.416 52.381 0.00 0.00 0.00 4.20
1454 5168 1.840741 CTATGTCGTTCTGCTTCGTCG 59.159 52.381 0.00 0.00 0.00 5.12
1455 5169 0.240145 ATGTCGTTCTGCTTCGTCGA 59.760 50.000 0.00 0.00 0.00 4.20
1456 5170 0.240145 TGTCGTTCTGCTTCGTCGAT 59.760 50.000 0.00 0.00 33.35 3.59
1458 5172 0.240145 TCGTTCTGCTTCGTCGATGT 59.760 50.000 4.21 0.00 0.00 3.06
1464 5178 0.317160 TGCTTCGTCGATGTCCTTGT 59.683 50.000 4.21 0.00 0.00 3.16
1465 5179 1.270094 TGCTTCGTCGATGTCCTTGTT 60.270 47.619 4.21 0.00 0.00 2.83
1474 5188 2.000447 GATGTCCTTGTTCGGCTGTAC 59.000 52.381 0.00 0.00 0.00 2.90
1475 5189 0.753867 TGTCCTTGTTCGGCTGTACA 59.246 50.000 0.12 0.12 0.00 2.90
1481 5195 2.831685 TGTTCGGCTGTACATTCACT 57.168 45.000 0.12 0.00 0.00 3.41
1485 5199 1.621317 TCGGCTGTACATTCACTTCCA 59.379 47.619 0.00 0.00 0.00 3.53
1486 5200 2.002586 CGGCTGTACATTCACTTCCAG 58.997 52.381 0.00 0.00 0.00 3.86
1487 5201 2.612972 CGGCTGTACATTCACTTCCAGT 60.613 50.000 0.00 0.00 0.00 4.00
1488 5202 3.368013 CGGCTGTACATTCACTTCCAGTA 60.368 47.826 0.00 0.00 0.00 2.74
1489 5203 4.680708 CGGCTGTACATTCACTTCCAGTAT 60.681 45.833 0.00 0.00 0.00 2.12
1500 5214 6.531503 TCACTTCCAGTATTCTTCCACTAG 57.468 41.667 0.00 0.00 0.00 2.57
1501 5215 6.253758 TCACTTCCAGTATTCTTCCACTAGA 58.746 40.000 0.00 0.00 0.00 2.43
1507 5223 8.410673 TCCAGTATTCTTCCACTAGATGTATC 57.589 38.462 0.00 0.00 0.00 2.24
1509 5225 7.175119 CCAGTATTCTTCCACTAGATGTATCGA 59.825 40.741 0.00 0.00 0.00 3.59
1518 5234 7.395617 TCCACTAGATGTATCGATAGTAAGCT 58.604 38.462 5.09 5.63 37.40 3.74
1519 5235 7.549842 TCCACTAGATGTATCGATAGTAAGCTC 59.450 40.741 5.09 0.00 37.40 4.09
1523 5239 7.151999 AGATGTATCGATAGTAAGCTCTTGG 57.848 40.000 5.09 0.00 37.40 3.61
1524 5240 5.707242 TGTATCGATAGTAAGCTCTTGGG 57.293 43.478 5.09 0.00 37.40 4.12
1528 5244 4.021229 TCGATAGTAAGCTCTTGGGTCAA 58.979 43.478 0.00 0.00 37.40 3.18
1540 5256 4.750941 TCTTGGGTCAAATCCATTTTCCT 58.249 39.130 0.00 0.00 33.82 3.36
1542 5258 5.714806 TCTTGGGTCAAATCCATTTTCCTAC 59.285 40.000 0.00 0.00 33.82 3.18
1543 5259 4.013728 TGGGTCAAATCCATTTTCCTACG 58.986 43.478 0.00 0.00 0.00 3.51
1548 5264 6.318900 GGTCAAATCCATTTTCCTACGATCTT 59.681 38.462 0.00 0.00 0.00 2.40
1554 5270 5.105106 TCCATTTTCCTACGATCTTGCAGTA 60.105 40.000 0.00 0.00 0.00 2.74
1558 5274 4.837896 TCCTACGATCTTGCAGTATCAG 57.162 45.455 10.05 6.13 0.00 2.90
1562 5278 2.133553 CGATCTTGCAGTATCAGGCTG 58.866 52.381 8.58 8.58 37.06 4.85
1565 5281 1.134995 TCTTGCAGTATCAGGCTGACG 60.135 52.381 21.37 9.87 36.12 4.35
1566 5282 0.608130 TTGCAGTATCAGGCTGACGT 59.392 50.000 21.37 7.69 36.12 4.34
1577 5293 1.173913 GGCTGACGTATTGGCCTTTT 58.826 50.000 3.32 0.00 41.20 2.27
1578 5294 1.544246 GGCTGACGTATTGGCCTTTTT 59.456 47.619 3.32 0.00 41.20 1.94
1579 5295 2.415491 GGCTGACGTATTGGCCTTTTTC 60.415 50.000 3.32 0.00 41.20 2.29
1580 5296 2.415491 GCTGACGTATTGGCCTTTTTCC 60.415 50.000 3.32 0.00 0.00 3.13
1581 5297 2.817258 CTGACGTATTGGCCTTTTTCCA 59.183 45.455 3.32 0.00 0.00 3.53
1593 5361 4.401519 GGCCTTTTTCCAATAAGGTACTCC 59.598 45.833 0.00 0.79 42.37 3.85
1595 5363 5.250982 CCTTTTTCCAATAAGGTACTCCGT 58.749 41.667 0.00 0.00 38.49 4.69
1596 5364 5.353400 CCTTTTTCCAATAAGGTACTCCGTC 59.647 44.000 0.00 0.00 38.49 4.79
1601 5369 5.452255 TCCAATAAGGTACTCCGTCTACAT 58.548 41.667 0.00 0.00 38.49 2.29
1605 5373 7.039923 CCAATAAGGTACTCCGTCTACATATGT 60.040 40.741 13.93 13.93 38.49 2.29
1613 5381 7.261829 ACTCCGTCTACATATGTTAGAAGTC 57.738 40.000 14.77 2.35 0.00 3.01
1614 5382 6.827251 ACTCCGTCTACATATGTTAGAAGTCA 59.173 38.462 14.77 5.68 0.00 3.41
1628 5397 8.709386 TGTTAGAAGTCAGAGCTGATAATTTC 57.291 34.615 3.19 6.28 42.18 2.17
1680 5449 9.289782 ACAATTAAAGAGACTGTCTATTTTGCT 57.710 29.630 28.73 14.91 38.64 3.91
1714 5483 6.737720 ATCACTATCCATTGCTGTCTCTTA 57.262 37.500 0.00 0.00 0.00 2.10
1758 5529 4.034858 CGATTAATGTGCTCAGTTGCTCAT 59.965 41.667 0.00 0.00 45.35 2.90
1772 5543 2.012902 GCTCATGCATGCCCCTGAAC 62.013 60.000 22.25 7.38 39.41 3.18
1776 5547 0.757935 ATGCATGCCCCTGAACCATC 60.758 55.000 16.68 0.00 0.00 3.51
1779 5550 1.559368 CATGCCCCTGAACCATCAAA 58.441 50.000 0.00 0.00 34.49 2.69
1781 5552 2.323999 TGCCCCTGAACCATCAAATT 57.676 45.000 0.00 0.00 34.49 1.82
1819 5590 1.262683 GCGCTGAGCCATTCATCTAAC 59.737 52.381 0.00 0.00 40.81 2.34
1839 5613 8.810652 TCTAACAAAACCATCAAATAACTTGC 57.189 30.769 0.00 0.00 34.76 4.01
1842 5616 5.466393 ACAAAACCATCAAATAACTTGCTGC 59.534 36.000 0.00 0.00 34.76 5.25
1846 5620 6.588719 ACCATCAAATAACTTGCTGCTTTA 57.411 33.333 0.00 0.00 34.76 1.85
1852 5626 7.895759 TCAAATAACTTGCTGCTTTAAAGGAT 58.104 30.769 16.78 0.71 34.76 3.24
2174 5951 6.324512 TCAATGCTATTGTTTATGCCCTTGAT 59.675 34.615 8.19 0.00 0.00 2.57
2403 6182 4.022589 GCAGCATAATGTATTGCCAGTGAT 60.023 41.667 0.00 0.00 0.00 3.06
2457 6236 2.424793 ACTGAAGGGGTTTACCTCCAA 58.575 47.619 0.00 0.00 40.87 3.53
2488 6267 5.690865 AGACATCTGTGTAACCTTTTCCAA 58.309 37.500 0.00 0.00 39.09 3.53
2744 6528 5.587289 TCAGGAGGAAAAACAAATTGTTCG 58.413 37.500 12.11 0.00 40.14 3.95
2860 6644 6.350445 CCTTTTAGTATGAGCACTTTTGGCAT 60.350 38.462 0.00 0.00 0.00 4.40
2938 6722 7.266400 ACCTGCTAGTAATACTTGAACTAAGC 58.734 38.462 6.07 4.39 40.16 3.09
2941 6725 6.383147 TGCTAGTAATACTTGAACTAAGCCCT 59.617 38.462 6.07 0.00 40.16 5.19
2951 6735 5.767816 TGAACTAAGCCCTTCTTTGAAAC 57.232 39.130 0.00 0.00 36.25 2.78
3225 7010 7.553334 AGTTTCCTCATTGCGAACTATAGTAA 58.447 34.615 5.65 0.00 0.00 2.24
3602 7412 4.548669 AGTCATCTCCTACTACTTTCCCC 58.451 47.826 0.00 0.00 0.00 4.81
3635 7445 7.870826 TGATCCTTGTGTTATTACAACAGTTG 58.129 34.615 12.03 12.03 35.75 3.16
3679 7489 7.823149 ACCGTTTTACTTGCTAGTGTAATAG 57.177 36.000 11.27 3.84 35.78 1.73
3727 7610 5.070001 TGTATTGTGCAGGAAGTAGCTTTT 58.930 37.500 0.00 0.00 0.00 2.27
3750 7633 3.406764 ACCTTGAGCAAAAGCTACTCTG 58.593 45.455 0.00 0.00 0.00 3.35
3877 7760 9.569122 AGACCTCTACTTAACAAAATGCTTAAA 57.431 29.630 0.00 0.00 0.00 1.52
3931 7814 6.173339 TCCTCAAGTTCAGATAACCACAATC 58.827 40.000 0.00 0.00 0.00 2.67
3943 7826 4.823790 AACCACAATCGTGAGTTAAACC 57.176 40.909 0.00 0.00 46.80 3.27
3944 7827 3.811083 ACCACAATCGTGAGTTAAACCA 58.189 40.909 0.00 0.00 46.80 3.67
3951 7834 6.264518 ACAATCGTGAGTTAAACCATTTCCTT 59.735 34.615 0.00 0.00 0.00 3.36
4118 8001 2.642311 TCCTATTGAACCCAGAGCACAA 59.358 45.455 0.00 0.00 0.00 3.33
4315 8198 7.500559 GCCAGTACTCAAGATAATTTTCTCCAT 59.499 37.037 0.00 0.00 0.00 3.41
4324 8207 7.105241 AGATAATTTTCTCCATTGGACTTGC 57.895 36.000 0.00 0.00 0.00 4.01
4408 8291 5.426689 AGAGTTAGGCATTTGATCTCACA 57.573 39.130 0.00 0.00 0.00 3.58
4409 8292 5.999044 AGAGTTAGGCATTTGATCTCACAT 58.001 37.500 0.00 0.00 0.00 3.21
4488 8371 3.960102 TCTCAAGGCCTTGTTTGATGTTT 59.040 39.130 37.97 1.97 41.16 2.83
4489 8372 4.037923 TCTCAAGGCCTTGTTTGATGTTTC 59.962 41.667 37.97 0.00 41.16 2.78
4520 8403 5.466127 AATGGTTACCATGGGATGTTACT 57.534 39.130 18.48 0.00 44.40 2.24
4597 8480 2.574006 AACATGACTGCTGACATGGT 57.426 45.000 28.89 24.04 45.71 3.55
5024 8907 6.376299 TCGTAGCTCAGTTTACTGGAGAATTA 59.624 38.462 9.82 0.08 43.91 1.40
5077 8960 6.042093 TCAATTATCTGTCCACCTGATCTACC 59.958 42.308 0.00 0.00 34.08 3.18
5213 9096 9.671279 TTGAATGAGCAAATGATCTCTTACTTA 57.329 29.630 0.00 0.00 0.00 2.24
5323 9206 4.021229 TCTGCTCATTGGAATGCTGAAAT 58.979 39.130 0.00 0.00 36.36 2.17
5360 9243 7.658575 GGTTACCTTAACATGACACAAGACTTA 59.341 37.037 0.00 0.00 40.39 2.24
5389 9272 5.191722 TGGAGCTGGTTATTGAGGTTTATCT 59.808 40.000 0.00 0.00 0.00 1.98
5855 9764 4.039488 TCAAAGAAAATCCAGCTGCACAAT 59.961 37.500 8.66 0.00 0.00 2.71
5937 9880 5.682471 GCAGCAAGCTGGACTTAGTCTATTA 60.682 44.000 22.20 0.00 43.77 0.98
5938 9881 5.751028 CAGCAAGCTGGACTTAGTCTATTAC 59.249 44.000 14.10 0.00 40.17 1.89
5939 9882 5.659079 AGCAAGCTGGACTTAGTCTATTACT 59.341 40.000 12.41 1.76 42.62 2.24
5940 9883 5.980715 GCAAGCTGGACTTAGTCTATTACTC 59.019 44.000 12.41 0.00 39.80 2.59
5941 9884 6.183360 GCAAGCTGGACTTAGTCTATTACTCT 60.183 42.308 12.41 0.00 39.80 3.24
5942 9885 7.013464 GCAAGCTGGACTTAGTCTATTACTCTA 59.987 40.741 12.41 0.00 39.80 2.43
5943 9886 9.073475 CAAGCTGGACTTAGTCTATTACTCTAT 57.927 37.037 12.41 0.00 39.80 1.98
5944 9887 9.649316 AAGCTGGACTTAGTCTATTACTCTATT 57.351 33.333 12.41 0.00 39.80 1.73
5960 9903 5.675538 ACTCTATTTACATCTGTGCCTTCC 58.324 41.667 0.00 0.00 0.00 3.46
6018 9961 3.857052 TGTTGGACATCTTACATCGACC 58.143 45.455 0.00 0.00 0.00 4.79
6091 10034 4.825634 AGGGCATCATCTTCATATGTGTTG 59.174 41.667 1.90 0.80 0.00 3.33
6271 10218 0.829990 TCTGGCTCAACACTGTCACA 59.170 50.000 0.00 0.00 0.00 3.58
6305 10252 1.812922 CGGCTCATCAGTGACTGCC 60.813 63.158 17.87 17.87 40.50 4.85
6358 10305 1.593196 CGGCGATTAATCACCCACAT 58.407 50.000 15.35 0.00 0.00 3.21
6388 10335 2.431260 GCTGCAACCACGGCAATG 60.431 61.111 0.00 0.00 41.39 2.82
6571 10518 4.927782 GTGGCGCCTGTGGTGTCA 62.928 66.667 29.70 0.00 46.04 3.58
6697 10644 0.908180 ACTCAGGTAACGGGAAGGGG 60.908 60.000 0.00 0.00 46.39 4.79
6700 10647 1.540617 AGGTAACGGGAAGGGGCTT 60.541 57.895 0.00 0.00 46.39 4.35
6815 10762 4.279671 AGAGATAGTAGCTTCAACCCATCG 59.720 45.833 0.00 0.00 0.00 3.84
6923 10873 4.761739 CCTAACAAGAAGTGATGCCAAGAA 59.238 41.667 0.00 0.00 0.00 2.52
6952 10902 1.959042 CTTTACGCCATCATCCAGCT 58.041 50.000 0.00 0.00 0.00 4.24
6960 10910 0.605860 CATCATCCAGCTAGCAGGGC 60.606 60.000 24.45 0.00 0.00 5.19
6993 10951 0.674895 GTCTCCAACCTGCTTCGCAT 60.675 55.000 0.00 0.00 38.13 4.73
7030 10988 0.746923 TCAGCATCATCAGCACCAGC 60.747 55.000 0.00 0.00 42.56 4.85
7087 11045 5.172934 TCAAATTCAGCATCATTTTCCAGC 58.827 37.500 0.00 0.00 0.00 4.85
7102 11060 3.896648 TCCAGCGACTTCACATTTTTC 57.103 42.857 0.00 0.00 0.00 2.29
7116 11074 3.983344 ACATTTTTCGCATGCTTCACTTC 59.017 39.130 17.13 0.00 0.00 3.01
7143 11102 7.858052 ATTATTGCTGAGTTTGTTTTTCTCG 57.142 32.000 0.00 0.00 0.00 4.04
7249 11243 7.755591 TCCAGAATTTTTGAGAGATCATTTCG 58.244 34.615 0.00 0.00 0.00 3.46
7261 11255 6.664515 AGAGATCATTTCGACGAGATAGTTC 58.335 40.000 0.00 0.00 0.00 3.01
7510 11504 1.149101 AACTTGACCACATCCAGGGT 58.851 50.000 0.00 0.00 40.96 4.34
7528 11522 5.419542 CAGGGTCCATACATCATATAACGG 58.580 45.833 0.00 0.00 0.00 4.44
7529 11523 4.081087 AGGGTCCATACATCATATAACGGC 60.081 45.833 0.00 0.00 0.00 5.68
7573 11567 3.582714 GCAGAAAGCTAAGCATTTGGT 57.417 42.857 0.00 0.00 41.15 3.67
7602 11617 5.479124 AGTAGGAACGAAAAGCTAGGAAA 57.521 39.130 0.00 0.00 0.00 3.13
7702 11725 0.820871 AGAGGATCCACTCGCAGAAC 59.179 55.000 15.82 0.00 42.31 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.953825 GATTTTAACAAGTGACTACATACGAAG 57.046 33.333 0.00 0.00 0.00 3.79
19 20 9.355215 AGAGATTTTAACAAGTGACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
48 49 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
50 51 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
51 52 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
53 54 7.985752 AGTACTTCCTCCGTTCCTAAATATTTG 59.014 37.037 11.05 1.40 0.00 2.32
55 56 7.672122 AGTACTTCCTCCGTTCCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
56 57 8.003629 ACTAGTACTTCCTCCGTTCCTAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
57 58 7.349598 ACTAGTACTTCCTCCGTTCCTAAATA 58.650 38.462 0.00 0.00 0.00 1.40
58 59 6.193504 ACTAGTACTTCCTCCGTTCCTAAAT 58.806 40.000 0.00 0.00 0.00 1.40
59 60 5.574188 ACTAGTACTTCCTCCGTTCCTAAA 58.426 41.667 0.00 0.00 0.00 1.85
60 61 5.184892 ACTAGTACTTCCTCCGTTCCTAA 57.815 43.478 0.00 0.00 0.00 2.69
61 62 4.851639 ACTAGTACTTCCTCCGTTCCTA 57.148 45.455 0.00 0.00 0.00 2.94
63 64 4.518590 GGATACTAGTACTTCCTCCGTTCC 59.481 50.000 13.30 5.88 0.00 3.62
64 65 4.518590 GGGATACTAGTACTTCCTCCGTTC 59.481 50.000 18.03 4.05 0.00 3.95
65 66 4.468713 GGGATACTAGTACTTCCTCCGTT 58.531 47.826 18.03 0.00 0.00 4.44
68 69 4.097551 ACGGGATACTAGTACTTCCTCC 57.902 50.000 18.03 14.19 0.00 4.30
70 71 4.413520 TGGTACGGGATACTAGTACTTCCT 59.586 45.833 18.03 6.17 44.29 3.36
71 72 4.718961 TGGTACGGGATACTAGTACTTCC 58.281 47.826 12.45 12.45 44.29 3.46
72 73 5.825151 AGTTGGTACGGGATACTAGTACTTC 59.175 44.000 4.31 0.00 44.29 3.01
73 74 5.760131 AGTTGGTACGGGATACTAGTACTT 58.240 41.667 4.31 0.00 44.29 2.24
74 75 5.379706 AGTTGGTACGGGATACTAGTACT 57.620 43.478 4.31 0.00 44.29 2.73
75 76 5.734503 GCAAGTTGGTACGGGATACTAGTAC 60.735 48.000 4.31 5.91 44.20 2.73
78 79 3.492137 GGCAAGTTGGTACGGGATACTAG 60.492 52.174 4.75 0.00 33.87 2.57
95 96 6.985188 TCTTTGCTTATTAGTAGTGGCAAG 57.015 37.500 0.00 0.00 40.05 4.01
100 101 8.116753 CCGTTTGATCTTTGCTTATTAGTAGTG 58.883 37.037 0.00 0.00 0.00 2.74
114 115 1.068541 GCCGCTTTCCGTTTGATCTTT 60.069 47.619 0.00 0.00 34.38 2.52
131 132 0.317160 TTAGTATCATCCAGCGGCCG 59.683 55.000 24.05 24.05 0.00 6.13
147 148 5.296035 AGAACTTTTTGTCCAGGACGTTTAG 59.704 40.000 15.24 11.63 34.95 1.85
148 149 5.187687 AGAACTTTTTGTCCAGGACGTTTA 58.812 37.500 15.24 0.00 34.95 2.01
149 150 4.014406 AGAACTTTTTGTCCAGGACGTTT 58.986 39.130 15.24 1.43 34.95 3.60
150 151 3.617284 AGAACTTTTTGTCCAGGACGTT 58.383 40.909 15.24 11.79 34.95 3.99
154 160 4.881850 GTGAGAAGAACTTTTTGTCCAGGA 59.118 41.667 0.00 0.00 0.00 3.86
197 203 2.757124 ATCATTCTGGTCGGGGCCC 61.757 63.158 15.76 15.76 0.00 5.80
263 286 1.096416 TTCGAAGGCCGTGTGTTTTT 58.904 45.000 0.00 0.00 39.75 1.94
264 287 0.379316 GTTCGAAGGCCGTGTGTTTT 59.621 50.000 0.00 0.00 39.75 2.43
265 288 1.441732 GGTTCGAAGGCCGTGTGTTT 61.442 55.000 0.00 0.00 39.75 2.83
266 289 1.890510 GGTTCGAAGGCCGTGTGTT 60.891 57.895 0.00 0.00 39.75 3.32
267 290 2.280592 GGTTCGAAGGCCGTGTGT 60.281 61.111 0.00 0.00 39.75 3.72
333 356 3.541713 CAGCCTACGCCTCCCCTC 61.542 72.222 0.00 0.00 34.57 4.30
450 610 2.665185 AGCAAGCCAACCGACGTC 60.665 61.111 5.18 5.18 0.00 4.34
511 4205 2.123164 TTATACCCGCTCGCCCCT 60.123 61.111 0.00 0.00 0.00 4.79
515 4209 0.389948 CCCATCTTATACCCGCTCGC 60.390 60.000 0.00 0.00 0.00 5.03
517 4211 1.349067 ACCCCATCTTATACCCGCTC 58.651 55.000 0.00 0.00 0.00 5.03
518 4212 1.420138 CAACCCCATCTTATACCCGCT 59.580 52.381 0.00 0.00 0.00 5.52
519 4213 1.892209 CAACCCCATCTTATACCCGC 58.108 55.000 0.00 0.00 0.00 6.13
735 4434 3.331478 AGCAGAGTTCAATCAGGTCAG 57.669 47.619 0.00 0.00 0.00 3.51
738 4437 3.683847 GCCATAGCAGAGTTCAATCAGGT 60.684 47.826 0.00 0.00 39.53 4.00
755 4454 7.040892 GCATCTTAGTTTCAGAATCATGCCATA 60.041 37.037 0.00 0.00 0.00 2.74
758 4457 5.066893 TGCATCTTAGTTTCAGAATCATGCC 59.933 40.000 9.90 0.00 0.00 4.40
759 4458 6.127810 TGCATCTTAGTTTCAGAATCATGC 57.872 37.500 7.07 7.07 0.00 4.06
799 4501 3.754955 TCGCTCAAGAGTATACACGTTG 58.245 45.455 5.50 5.70 0.00 4.10
800 4502 3.731264 GCTCGCTCAAGAGTATACACGTT 60.731 47.826 5.50 0.00 40.26 3.99
803 4511 2.733517 GGCTCGCTCAAGAGTATACAC 58.266 52.381 5.50 0.00 40.26 2.90
805 4513 1.334243 ACGGCTCGCTCAAGAGTATAC 59.666 52.381 0.00 0.00 40.26 1.47
812 4522 3.175240 CACGACGGCTCGCTCAAG 61.175 66.667 0.00 0.00 44.33 3.02
830 4540 2.559998 TTTTCCGACCGTACGTATCC 57.440 50.000 15.21 0.00 0.00 2.59
844 4554 1.545841 AGATGGGAAGCGGTTTTTCC 58.454 50.000 0.00 4.90 42.73 3.13
850 4560 0.899720 TCGTTTAGATGGGAAGCGGT 59.100 50.000 0.00 0.00 32.20 5.68
852 4562 3.727970 GCTTTTCGTTTAGATGGGAAGCG 60.728 47.826 0.00 0.00 32.53 4.68
853 4563 3.427638 GGCTTTTCGTTTAGATGGGAAGC 60.428 47.826 0.00 0.00 37.96 3.86
854 4564 3.181510 CGGCTTTTCGTTTAGATGGGAAG 60.182 47.826 0.00 0.00 0.00 3.46
856 4566 2.352388 CGGCTTTTCGTTTAGATGGGA 58.648 47.619 0.00 0.00 0.00 4.37
880 4590 2.731691 CTACGCCAACACAGCAGGGT 62.732 60.000 0.00 0.00 0.00 4.34
932 4646 2.829720 GGAATTTGGGGTTAGTTGGTCC 59.170 50.000 0.00 0.00 0.00 4.46
941 4655 2.120312 ACGTTTTGGGAATTTGGGGTT 58.880 42.857 0.00 0.00 0.00 4.11
942 4656 1.796017 ACGTTTTGGGAATTTGGGGT 58.204 45.000 0.00 0.00 0.00 4.95
943 4657 2.367241 AGAACGTTTTGGGAATTTGGGG 59.633 45.455 0.46 0.00 0.00 4.96
944 4658 3.554129 GGAGAACGTTTTGGGAATTTGGG 60.554 47.826 0.46 0.00 0.00 4.12
945 4659 3.554129 GGGAGAACGTTTTGGGAATTTGG 60.554 47.826 0.46 0.00 0.00 3.28
946 4660 3.320826 AGGGAGAACGTTTTGGGAATTTG 59.679 43.478 0.46 0.00 0.00 2.32
949 4663 2.971901 AGGGAGAACGTTTTGGGAAT 57.028 45.000 0.46 0.00 0.00 3.01
951 4665 2.578786 GAAAGGGAGAACGTTTTGGGA 58.421 47.619 0.46 0.00 37.30 4.37
1209 4923 2.359230 AAGCCGAGGCACTTGAGC 60.359 61.111 17.18 0.00 44.22 4.26
1275 4989 3.758931 GAAATGGGTGCGGGTGCC 61.759 66.667 0.00 0.00 41.78 5.01
1276 4990 4.114997 CGAAATGGGTGCGGGTGC 62.115 66.667 0.00 0.00 43.20 5.01
1278 4992 2.359478 GACGAAATGGGTGCGGGT 60.359 61.111 0.00 0.00 0.00 5.28
1279 4993 2.359354 TGACGAAATGGGTGCGGG 60.359 61.111 0.00 0.00 0.00 6.13
1280 4994 1.234615 AACTGACGAAATGGGTGCGG 61.235 55.000 0.00 0.00 0.00 5.69
1281 4995 0.110238 CAACTGACGAAATGGGTGCG 60.110 55.000 0.00 0.00 0.00 5.34
1282 4996 1.234821 TCAACTGACGAAATGGGTGC 58.765 50.000 0.00 0.00 0.00 5.01
1283 4997 3.253188 ACATTCAACTGACGAAATGGGTG 59.747 43.478 0.00 0.00 0.00 4.61
1284 4998 3.253188 CACATTCAACTGACGAAATGGGT 59.747 43.478 0.00 0.00 0.00 4.51
1288 5002 3.565482 ACAGCACATTCAACTGACGAAAT 59.435 39.130 0.00 0.00 35.38 2.17
1289 5003 2.942376 ACAGCACATTCAACTGACGAAA 59.058 40.909 0.00 0.00 35.38 3.46
1290 5004 2.560504 ACAGCACATTCAACTGACGAA 58.439 42.857 0.00 0.00 35.38 3.85
1293 5007 2.349817 CCGAACAGCACATTCAACTGAC 60.350 50.000 0.00 0.00 35.38 3.51
1294 5008 1.872952 CCGAACAGCACATTCAACTGA 59.127 47.619 0.00 0.00 35.38 3.41
1295 5009 1.069022 CCCGAACAGCACATTCAACTG 60.069 52.381 0.00 0.00 37.45 3.16
1296 5010 1.238439 CCCGAACAGCACATTCAACT 58.762 50.000 0.00 0.00 0.00 3.16
1298 5012 1.606668 GAACCCGAACAGCACATTCAA 59.393 47.619 0.00 0.00 0.00 2.69
1300 5014 1.197721 CAGAACCCGAACAGCACATTC 59.802 52.381 0.00 0.00 0.00 2.67
1301 5015 1.238439 CAGAACCCGAACAGCACATT 58.762 50.000 0.00 0.00 0.00 2.71
1314 5028 4.176752 CCCTAGCCCGGCAGAACC 62.177 72.222 13.15 0.00 0.00 3.62
1318 5032 4.489771 CCAACCCTAGCCCGGCAG 62.490 72.222 13.15 7.02 0.00 4.85
1323 5037 0.394488 GCTTCTTCCAACCCTAGCCC 60.394 60.000 0.00 0.00 0.00 5.19
1324 5038 0.394488 GGCTTCTTCCAACCCTAGCC 60.394 60.000 0.00 0.00 41.08 3.93
1326 5040 0.902531 TCGGCTTCTTCCAACCCTAG 59.097 55.000 0.00 0.00 0.00 3.02
1327 5041 0.902531 CTCGGCTTCTTCCAACCCTA 59.097 55.000 0.00 0.00 0.00 3.53
1329 5043 1.377333 CCTCGGCTTCTTCCAACCC 60.377 63.158 0.00 0.00 0.00 4.11
1331 5045 1.549170 TCTACCTCGGCTTCTTCCAAC 59.451 52.381 0.00 0.00 0.00 3.77
1332 5046 1.933021 TCTACCTCGGCTTCTTCCAA 58.067 50.000 0.00 0.00 0.00 3.53
1333 5047 1.933021 TTCTACCTCGGCTTCTTCCA 58.067 50.000 0.00 0.00 0.00 3.53
1334 5048 2.827652 CATTCTACCTCGGCTTCTTCC 58.172 52.381 0.00 0.00 0.00 3.46
1335 5049 2.205911 GCATTCTACCTCGGCTTCTTC 58.794 52.381 0.00 0.00 0.00 2.87
1336 5050 1.555075 TGCATTCTACCTCGGCTTCTT 59.445 47.619 0.00 0.00 0.00 2.52
1337 5051 1.137872 CTGCATTCTACCTCGGCTTCT 59.862 52.381 0.00 0.00 0.00 2.85
1339 5053 1.195115 TCTGCATTCTACCTCGGCTT 58.805 50.000 0.00 0.00 0.00 4.35
1340 5054 1.418334 ATCTGCATTCTACCTCGGCT 58.582 50.000 0.00 0.00 0.00 5.52
1342 5056 2.353208 GGCTATCTGCATTCTACCTCGG 60.353 54.545 0.00 0.00 45.15 4.63
1343 5057 2.353208 GGGCTATCTGCATTCTACCTCG 60.353 54.545 0.00 0.00 45.15 4.63
1344 5058 2.353208 CGGGCTATCTGCATTCTACCTC 60.353 54.545 0.00 0.00 45.15 3.85
1345 5059 1.620819 CGGGCTATCTGCATTCTACCT 59.379 52.381 0.00 0.00 45.15 3.08
1347 5061 3.005897 TCTTCGGGCTATCTGCATTCTAC 59.994 47.826 0.00 0.00 45.15 2.59
1348 5062 3.230976 TCTTCGGGCTATCTGCATTCTA 58.769 45.455 0.00 0.00 45.15 2.10
1349 5063 2.042464 TCTTCGGGCTATCTGCATTCT 58.958 47.619 0.00 0.00 45.15 2.40
1351 5065 2.611473 CGATCTTCGGGCTATCTGCATT 60.611 50.000 0.00 0.00 45.15 3.56
1352 5066 1.067283 CGATCTTCGGGCTATCTGCAT 60.067 52.381 0.00 0.00 45.15 3.96
1353 5067 0.315251 CGATCTTCGGGCTATCTGCA 59.685 55.000 0.00 0.00 45.15 4.41
1354 5068 0.598562 TCGATCTTCGGGCTATCTGC 59.401 55.000 0.00 0.00 40.88 4.26
1357 5071 5.061920 ACTAAATCGATCTTCGGGCTATC 57.938 43.478 0.00 0.00 40.88 2.08
1358 5072 5.221461 ACAACTAAATCGATCTTCGGGCTAT 60.221 40.000 0.00 0.00 40.88 2.97
1359 5073 4.098960 ACAACTAAATCGATCTTCGGGCTA 59.901 41.667 0.00 0.00 40.88 3.93
1360 5074 3.118738 ACAACTAAATCGATCTTCGGGCT 60.119 43.478 0.00 0.00 40.88 5.19
1362 5076 4.430007 TGACAACTAAATCGATCTTCGGG 58.570 43.478 0.00 0.00 40.88 5.14
1363 5077 5.230306 GTCTGACAACTAAATCGATCTTCGG 59.770 44.000 0.00 0.00 40.88 4.30
1365 5079 9.522804 AATAGTCTGACAACTAAATCGATCTTC 57.477 33.333 10.88 0.00 35.47 2.87
1367 5081 8.470805 ACAATAGTCTGACAACTAAATCGATCT 58.529 33.333 10.88 0.00 35.47 2.75
1368 5082 8.535592 CACAATAGTCTGACAACTAAATCGATC 58.464 37.037 10.88 0.00 35.47 3.69
1369 5083 7.010552 GCACAATAGTCTGACAACTAAATCGAT 59.989 37.037 10.88 0.00 35.47 3.59
1370 5084 6.310467 GCACAATAGTCTGACAACTAAATCGA 59.690 38.462 10.88 0.00 35.47 3.59
1372 5086 6.090898 ACGCACAATAGTCTGACAACTAAATC 59.909 38.462 10.88 0.00 35.47 2.17
1375 5089 4.878439 ACGCACAATAGTCTGACAACTAA 58.122 39.130 10.88 0.00 35.47 2.24
1377 5091 3.386768 ACGCACAATAGTCTGACAACT 57.613 42.857 10.88 0.00 0.00 3.16
1379 5093 3.462982 ACAACGCACAATAGTCTGACAA 58.537 40.909 10.88 0.00 0.00 3.18
1381 5095 3.493129 TGAACAACGCACAATAGTCTGAC 59.507 43.478 0.00 0.00 0.00 3.51
1382 5096 3.723260 TGAACAACGCACAATAGTCTGA 58.277 40.909 0.00 0.00 0.00 3.27
1383 5097 3.494626 ACTGAACAACGCACAATAGTCTG 59.505 43.478 0.00 0.00 0.00 3.51
1384 5098 3.728845 ACTGAACAACGCACAATAGTCT 58.271 40.909 0.00 0.00 0.00 3.24
1385 5099 3.120649 GGACTGAACAACGCACAATAGTC 60.121 47.826 0.00 0.00 34.19 2.59
1386 5100 2.806244 GGACTGAACAACGCACAATAGT 59.194 45.455 0.00 0.00 0.00 2.12
1387 5101 2.805671 TGGACTGAACAACGCACAATAG 59.194 45.455 0.00 0.00 0.00 1.73
1388 5102 2.805671 CTGGACTGAACAACGCACAATA 59.194 45.455 0.00 0.00 0.00 1.90
1389 5103 1.603802 CTGGACTGAACAACGCACAAT 59.396 47.619 0.00 0.00 0.00 2.71
1390 5104 1.013596 CTGGACTGAACAACGCACAA 58.986 50.000 0.00 0.00 0.00 3.33
1391 5105 1.436195 GCTGGACTGAACAACGCACA 61.436 55.000 0.00 0.00 0.00 4.57
1392 5106 1.279840 GCTGGACTGAACAACGCAC 59.720 57.895 0.00 0.00 0.00 5.34
1394 5108 0.593128 AATGCTGGACTGAACAACGC 59.407 50.000 0.00 0.00 0.00 4.84
1395 5109 1.664016 GCAATGCTGGACTGAACAACG 60.664 52.381 0.00 0.00 0.00 4.10
1396 5110 1.336240 GGCAATGCTGGACTGAACAAC 60.336 52.381 4.82 0.00 0.00 3.32
1397 5111 0.961019 GGCAATGCTGGACTGAACAA 59.039 50.000 4.82 0.00 0.00 2.83
1398 5112 0.895100 GGGCAATGCTGGACTGAACA 60.895 55.000 4.82 0.00 0.00 3.18
1399 5113 0.610232 AGGGCAATGCTGGACTGAAC 60.610 55.000 4.82 0.00 0.00 3.18
1400 5114 0.112995 AAGGGCAATGCTGGACTGAA 59.887 50.000 4.82 0.00 0.00 3.02
1401 5115 0.609957 CAAGGGCAATGCTGGACTGA 60.610 55.000 4.82 0.00 0.00 3.41
1402 5116 1.601419 CCAAGGGCAATGCTGGACTG 61.601 60.000 4.82 0.00 0.00 3.51
1403 5117 1.304713 CCAAGGGCAATGCTGGACT 60.305 57.895 4.82 0.00 0.00 3.85
1404 5118 2.353610 CCCAAGGGCAATGCTGGAC 61.354 63.158 12.82 0.00 0.00 4.02
1405 5119 2.037687 CCCAAGGGCAATGCTGGA 59.962 61.111 12.82 0.00 0.00 3.86
1406 5120 3.078836 CCCCAAGGGCAATGCTGG 61.079 66.667 4.82 5.01 35.35 4.85
1416 5130 1.745489 GCGAGTGTTAGCCCCAAGG 60.745 63.158 0.00 0.00 0.00 3.61
1417 5131 0.535335 TAGCGAGTGTTAGCCCCAAG 59.465 55.000 0.00 0.00 0.00 3.61
1418 5132 1.134521 CATAGCGAGTGTTAGCCCCAA 60.135 52.381 0.00 0.00 0.00 4.12
1419 5133 0.464036 CATAGCGAGTGTTAGCCCCA 59.536 55.000 0.00 0.00 0.00 4.96
1420 5134 0.464452 ACATAGCGAGTGTTAGCCCC 59.536 55.000 0.00 0.00 0.00 5.80
1421 5135 1.854227 GACATAGCGAGTGTTAGCCC 58.146 55.000 0.00 0.00 0.00 5.19
1422 5136 1.202268 ACGACATAGCGAGTGTTAGCC 60.202 52.381 0.00 0.00 34.83 3.93
1423 5137 2.190325 ACGACATAGCGAGTGTTAGC 57.810 50.000 0.00 0.00 34.83 3.09
1424 5138 3.786576 CAGAACGACATAGCGAGTGTTAG 59.213 47.826 0.00 0.00 34.83 2.34
1425 5139 3.754955 CAGAACGACATAGCGAGTGTTA 58.245 45.455 0.00 0.00 34.83 2.41
1426 5140 2.596452 CAGAACGACATAGCGAGTGTT 58.404 47.619 0.00 0.00 34.83 3.32
1427 5141 1.732732 GCAGAACGACATAGCGAGTGT 60.733 52.381 0.00 0.00 34.83 3.55
1428 5142 0.917259 GCAGAACGACATAGCGAGTG 59.083 55.000 0.00 0.00 34.83 3.51
1429 5143 0.811915 AGCAGAACGACATAGCGAGT 59.188 50.000 0.00 0.00 34.83 4.18
1430 5144 1.849219 GAAGCAGAACGACATAGCGAG 59.151 52.381 0.00 0.00 34.83 5.03
1431 5145 1.794076 CGAAGCAGAACGACATAGCGA 60.794 52.381 0.00 0.00 34.83 4.93
1432 5146 0.567968 CGAAGCAGAACGACATAGCG 59.432 55.000 0.00 0.00 37.29 4.26
1433 5147 1.584308 GACGAAGCAGAACGACATAGC 59.416 52.381 0.00 0.00 0.00 2.97
1434 5148 1.840741 CGACGAAGCAGAACGACATAG 59.159 52.381 0.00 0.00 0.00 2.23
1435 5149 1.465777 TCGACGAAGCAGAACGACATA 59.534 47.619 0.00 0.00 0.00 2.29
1436 5150 0.240145 TCGACGAAGCAGAACGACAT 59.760 50.000 0.00 0.00 0.00 3.06
1437 5151 0.240145 ATCGACGAAGCAGAACGACA 59.760 50.000 0.00 0.00 35.91 4.35
1438 5152 0.635731 CATCGACGAAGCAGAACGAC 59.364 55.000 0.00 0.00 35.91 4.34
1439 5153 0.240145 ACATCGACGAAGCAGAACGA 59.760 50.000 0.00 0.00 37.39 3.85
1440 5154 0.635731 GACATCGACGAAGCAGAACG 59.364 55.000 0.00 0.00 0.00 3.95
1441 5155 0.992802 GGACATCGACGAAGCAGAAC 59.007 55.000 0.00 0.00 0.00 3.01
1442 5156 0.888619 AGGACATCGACGAAGCAGAA 59.111 50.000 0.00 0.00 0.00 3.02
1443 5157 0.888619 AAGGACATCGACGAAGCAGA 59.111 50.000 0.00 0.00 0.00 4.26
1444 5158 0.994995 CAAGGACATCGACGAAGCAG 59.005 55.000 0.00 0.00 0.00 4.24
1445 5159 0.317160 ACAAGGACATCGACGAAGCA 59.683 50.000 0.00 0.00 0.00 3.91
1446 5160 1.390463 GAACAAGGACATCGACGAAGC 59.610 52.381 0.00 0.00 0.00 3.86
1447 5161 1.649171 CGAACAAGGACATCGACGAAG 59.351 52.381 0.00 0.00 38.82 3.79
1448 5162 1.667756 CCGAACAAGGACATCGACGAA 60.668 52.381 0.00 0.00 38.82 3.85
1449 5163 0.109458 CCGAACAAGGACATCGACGA 60.109 55.000 0.00 0.00 38.82 4.20
1450 5164 1.683790 GCCGAACAAGGACATCGACG 61.684 60.000 0.00 0.00 38.82 5.12
1451 5165 0.389948 AGCCGAACAAGGACATCGAC 60.390 55.000 0.00 0.00 38.82 4.20
1452 5166 0.389817 CAGCCGAACAAGGACATCGA 60.390 55.000 0.00 0.00 38.82 3.59
1453 5167 0.670546 ACAGCCGAACAAGGACATCG 60.671 55.000 0.00 0.00 36.39 3.84
1454 5168 2.000447 GTACAGCCGAACAAGGACATC 59.000 52.381 0.00 0.00 0.00 3.06
1455 5169 1.346395 TGTACAGCCGAACAAGGACAT 59.654 47.619 0.00 0.00 0.00 3.06
1456 5170 0.753867 TGTACAGCCGAACAAGGACA 59.246 50.000 0.00 0.00 0.00 4.02
1458 5172 2.037902 TGAATGTACAGCCGAACAAGGA 59.962 45.455 0.33 0.00 0.00 3.36
1464 5178 2.037902 TGGAAGTGAATGTACAGCCGAA 59.962 45.455 0.33 0.00 0.00 4.30
1465 5179 1.621317 TGGAAGTGAATGTACAGCCGA 59.379 47.619 0.33 0.00 0.00 5.54
1481 5195 8.783660 ATACATCTAGTGGAAGAATACTGGAA 57.216 34.615 0.00 0.00 37.83 3.53
1485 5199 8.871629 ATCGATACATCTAGTGGAAGAATACT 57.128 34.615 0.00 0.00 0.00 2.12
1487 5201 9.961264 ACTATCGATACATCTAGTGGAAGAATA 57.039 33.333 0.00 0.00 0.00 1.75
1488 5202 8.871629 ACTATCGATACATCTAGTGGAAGAAT 57.128 34.615 0.00 0.00 0.00 2.40
1489 5203 9.788889 TTACTATCGATACATCTAGTGGAAGAA 57.211 33.333 0.00 0.00 0.00 2.52
1500 5214 6.071840 ACCCAAGAGCTTACTATCGATACATC 60.072 42.308 0.00 0.00 0.00 3.06
1501 5215 5.775701 ACCCAAGAGCTTACTATCGATACAT 59.224 40.000 0.00 0.00 0.00 2.29
1507 5223 4.386867 TTGACCCAAGAGCTTACTATCG 57.613 45.455 0.00 0.00 0.00 2.92
1509 5225 5.191722 TGGATTTGACCCAAGAGCTTACTAT 59.808 40.000 0.00 0.00 0.00 2.12
1512 5228 3.686016 TGGATTTGACCCAAGAGCTTAC 58.314 45.455 0.00 0.00 0.00 2.34
1518 5234 4.750941 AGGAAAATGGATTTGACCCAAGA 58.249 39.130 0.00 0.00 37.22 3.02
1519 5235 5.393027 CGTAGGAAAATGGATTTGACCCAAG 60.393 44.000 0.00 0.00 37.22 3.61
1523 5239 5.823045 AGATCGTAGGAAAATGGATTTGACC 59.177 40.000 0.00 0.00 0.00 4.02
1524 5240 6.927294 AGATCGTAGGAAAATGGATTTGAC 57.073 37.500 0.00 0.00 0.00 3.18
1528 5244 5.192927 TGCAAGATCGTAGGAAAATGGATT 58.807 37.500 0.00 0.00 0.00 3.01
1540 5256 2.959030 AGCCTGATACTGCAAGATCGTA 59.041 45.455 0.00 0.00 37.43 3.43
1542 5258 2.133553 CAGCCTGATACTGCAAGATCG 58.866 52.381 0.00 0.00 37.43 3.69
1543 5259 3.129871 GTCAGCCTGATACTGCAAGATC 58.870 50.000 0.00 0.00 37.43 2.75
1548 5264 1.470051 TACGTCAGCCTGATACTGCA 58.530 50.000 0.00 0.00 35.04 4.41
1554 5270 0.179045 GGCCAATACGTCAGCCTGAT 60.179 55.000 0.00 0.00 42.34 2.90
1558 5274 1.173913 AAAAGGCCAATACGTCAGCC 58.826 50.000 5.01 9.38 46.13 4.85
1562 5278 3.926821 TTGGAAAAAGGCCAATACGTC 57.073 42.857 5.01 0.00 40.32 4.34
1593 5361 6.853872 GCTCTGACTTCTAACATATGTAGACG 59.146 42.308 9.21 11.64 0.00 4.18
1595 5363 7.775561 TCAGCTCTGACTTCTAACATATGTAGA 59.224 37.037 9.21 9.44 34.14 2.59
1596 5364 7.935520 TCAGCTCTGACTTCTAACATATGTAG 58.064 38.462 9.21 5.29 34.14 2.74
1605 5373 9.376075 CAAGAAATTATCAGCTCTGACTTCTAA 57.624 33.333 1.15 0.00 43.11 2.10
1613 5381 8.077991 TGTCAAAACAAGAAATTATCAGCTCTG 58.922 33.333 0.00 0.00 30.70 3.35
1614 5382 8.169977 TGTCAAAACAAGAAATTATCAGCTCT 57.830 30.769 0.00 0.00 30.70 4.09
1628 5397 8.638685 AGAAAATCATGAACTGTCAAAACAAG 57.361 30.769 0.00 0.00 37.30 3.16
1725 5495 1.597663 CACATTAATCGGTTCGAGGGC 59.402 52.381 0.00 0.00 39.91 5.19
1758 5529 1.380246 GATGGTTCAGGGGCATGCA 60.380 57.895 21.36 0.00 0.00 3.96
1772 5543 9.520204 CCTGCTTTATACAAAGTAATTTGATGG 57.480 33.333 21.48 6.94 42.71 3.51
1776 5547 6.472163 CGCCCTGCTTTATACAAAGTAATTTG 59.528 38.462 13.78 13.78 42.71 2.32
1779 5550 4.036380 GCGCCCTGCTTTATACAAAGTAAT 59.964 41.667 0.00 0.00 42.71 1.89
1781 5552 2.940410 GCGCCCTGCTTTATACAAAGTA 59.060 45.455 0.00 0.00 42.71 2.24
1803 5574 5.076182 TGGTTTTGTTAGATGAATGGCTCA 58.924 37.500 0.00 0.00 38.81 4.26
1833 5607 4.829492 ACTGATCCTTTAAAGCAGCAAGTT 59.171 37.500 16.63 0.00 0.00 2.66
1836 5610 8.574251 TTATAACTGATCCTTTAAAGCAGCAA 57.426 30.769 16.63 8.84 0.00 3.91
2174 5951 8.573035 GTTGTAGACAAAGAACCAAATGGATTA 58.427 33.333 6.42 0.00 37.63 1.75
2403 6182 7.517614 TGTAAAAAGATGCCAACTATGTTGA 57.482 32.000 11.47 0.00 0.00 3.18
2457 6236 0.767375 ACACAGATGTCTTGCAGGGT 59.233 50.000 0.00 0.00 31.55 4.34
2488 6267 4.130118 CAGTCTTAACACTTGAGCCTGTT 58.870 43.478 0.00 0.00 34.89 3.16
2612 6393 7.167924 TGCCTTTGCAATTATAAGTGATGAA 57.832 32.000 16.69 6.51 46.66 2.57
2632 6413 2.050144 TCTCAAGGAAGAGTGTTGCCT 58.950 47.619 0.00 0.00 36.97 4.75
2938 6722 5.133221 TGAGAAAGAGGTTTCAAAGAAGGG 58.867 41.667 1.03 0.00 44.08 3.95
2941 6725 5.067805 GCCTTGAGAAAGAGGTTTCAAAGAA 59.932 40.000 11.78 0.00 44.08 2.52
2951 6735 3.198635 TCATGGTAGCCTTGAGAAAGAGG 59.801 47.826 0.00 0.00 33.63 3.69
3225 7010 9.436957 CTTACAGTTATAAAGACACAATCTGGT 57.563 33.333 0.00 0.00 37.88 4.00
3377 7162 3.743521 TCAGTGCTACACAGAAAAGCAT 58.256 40.909 0.00 0.00 46.99 3.79
3602 7412 2.995466 ACACAAGGATCATTGCAACG 57.005 45.000 19.47 8.61 33.28 4.10
3635 7445 5.934043 ACGGTACAATAAGAGGTTGGTAAAC 59.066 40.000 0.00 0.00 35.40 2.01
3877 7760 6.313519 TCAGTAAATAATTGCTCAGGGACT 57.686 37.500 0.00 0.00 29.64 3.85
3931 7814 7.198306 ACTTAAGGAAATGGTTTAACTCACG 57.802 36.000 7.53 0.00 0.00 4.35
3995 7878 7.230108 ACCTGCGATTCTGAAAATATCATCATT 59.770 33.333 0.00 0.00 37.44 2.57
4061 7944 6.103205 TCCCCTGATCCATATTTTCTAAAGCT 59.897 38.462 0.00 0.00 0.00 3.74
4274 8157 3.385384 GGCCCAAAAGCAGCCTCC 61.385 66.667 0.00 0.00 43.62 4.30
4315 8198 4.216257 GCTTGTTCTGATTAGCAAGTCCAA 59.784 41.667 0.00 0.00 40.09 3.53
4317 8200 3.127721 GGCTTGTTCTGATTAGCAAGTCC 59.872 47.826 0.00 0.00 40.09 3.85
4324 8207 3.438087 CCACAGTGGCTTGTTCTGATTAG 59.562 47.826 6.67 0.00 33.93 1.73
4408 8291 4.654915 TGGAACACACACATTCTCATCAT 58.345 39.130 0.00 0.00 0.00 2.45
4409 8292 4.084011 TGGAACACACACATTCTCATCA 57.916 40.909 0.00 0.00 0.00 3.07
4488 8371 5.439721 CCATGGTAACCATTTGATCTGAGA 58.560 41.667 2.57 0.00 42.23 3.27
4489 8372 4.581824 CCCATGGTAACCATTTGATCTGAG 59.418 45.833 11.73 0.00 42.23 3.35
4520 8403 6.375455 GGATCTCCAACTGAAAATCAAAGCTA 59.625 38.462 0.00 0.00 35.64 3.32
4597 8480 6.153170 TGTTGTGGAGTCCATAATAGTTACGA 59.847 38.462 22.53 0.86 37.01 3.43
4917 8800 4.413189 TGGCCTGATTCTTGGATGAGATAA 59.587 41.667 3.32 0.00 0.00 1.75
4986 8869 5.590663 ACTGAGCTACGATTGACAGAGATAA 59.409 40.000 0.00 0.00 0.00 1.75
5024 8907 2.037620 GCTCGGCATCTCCAGGTGAT 62.038 60.000 0.00 0.00 34.01 3.06
5077 8960 1.391485 CGACAGCATGAAAGTTCTCCG 59.609 52.381 0.00 0.00 39.69 4.63
5213 9096 0.975040 TTGCACCACAGCCAACCTTT 60.975 50.000 0.00 0.00 0.00 3.11
5282 9165 3.954904 CAGATATACTCCCAGGGGATACG 59.045 52.174 7.68 0.00 44.24 3.06
5323 9206 4.837860 TGTTAAGGTAACCCTCGGAACTAA 59.162 41.667 0.00 0.00 41.56 2.24
5360 9243 2.503356 CTCAATAACCAGCTCCACCTCT 59.497 50.000 0.00 0.00 0.00 3.69
5389 9272 9.802039 AATAACTGGAGTTTGTACAAAAGGATA 57.198 29.630 22.14 13.06 39.31 2.59
5481 9364 4.262592 GGCTTGGATTGAGGACATGTTTTT 60.263 41.667 0.00 0.00 0.00 1.94
5545 9428 5.163301 ACGTTGCCAAGAACAGATAGGATAT 60.163 40.000 0.00 0.00 0.00 1.63
5628 9511 4.130118 GCAGGATCCTCATTTGTCGTTAT 58.870 43.478 12.69 0.00 0.00 1.89
5660 9543 2.224695 ACCCAAGAAAAGGTTAGGTCCG 60.225 50.000 0.00 0.00 29.94 4.79
5743 9627 4.263727 TGGCATCTTTTTAAGGTAGGCAGA 60.264 41.667 0.00 0.00 0.00 4.26
5821 9730 5.128499 TGGATTTTCTTTGAAAGCAAGACCA 59.872 36.000 11.02 11.02 35.04 4.02
5855 9764 3.389983 ACTTACCTGCTTGTGACTTGGTA 59.610 43.478 0.00 0.00 0.00 3.25
5937 9880 5.675538 GGAAGGCACAGATGTAAATAGAGT 58.324 41.667 0.00 0.00 0.00 3.24
5938 9881 4.747108 CGGAAGGCACAGATGTAAATAGAG 59.253 45.833 0.00 0.00 0.00 2.43
5939 9882 4.161565 ACGGAAGGCACAGATGTAAATAGA 59.838 41.667 0.00 0.00 0.00 1.98
5940 9883 4.442706 ACGGAAGGCACAGATGTAAATAG 58.557 43.478 0.00 0.00 0.00 1.73
5941 9884 4.481368 ACGGAAGGCACAGATGTAAATA 57.519 40.909 0.00 0.00 0.00 1.40
5942 9885 3.350219 ACGGAAGGCACAGATGTAAAT 57.650 42.857 0.00 0.00 0.00 1.40
5943 9886 2.851263 ACGGAAGGCACAGATGTAAA 57.149 45.000 0.00 0.00 0.00 2.01
5944 9887 2.851263 AACGGAAGGCACAGATGTAA 57.149 45.000 0.00 0.00 0.00 2.41
5952 9895 1.398390 CTGAAGCATAACGGAAGGCAC 59.602 52.381 0.00 0.00 0.00 5.01
5960 9903 6.703607 AGATGAGAAATACCTGAAGCATAACG 59.296 38.462 0.00 0.00 0.00 3.18
6271 10218 4.498520 CGGCTCGTCGTCAGGCAT 62.499 66.667 8.02 0.00 36.21 4.40
6358 10305 2.681064 GCAGCTGAAATGGGGCCA 60.681 61.111 20.43 0.00 0.00 5.36
6562 10509 0.485543 TCCCTCTACCTGACACCACA 59.514 55.000 0.00 0.00 0.00 4.17
6571 10518 1.006162 GACCTGACAGTCCCTCTACCT 59.994 57.143 0.93 0.00 0.00 3.08
6685 10632 3.083386 CCAAGCCCCTTCCCGTTA 58.917 61.111 0.00 0.00 0.00 3.18
6697 10644 0.110373 CGTCGGTAACTTTGCCAAGC 60.110 55.000 0.00 0.00 32.57 4.01
6700 10647 1.962306 GGCGTCGGTAACTTTGCCA 60.962 57.895 0.00 0.00 42.14 4.92
6733 10680 0.822121 AAACTTCACCTTCCGCCCAC 60.822 55.000 0.00 0.00 0.00 4.61
6946 10896 3.150335 CTCGCCCTGCTAGCTGGA 61.150 66.667 35.01 18.58 37.23 3.86
6952 10902 4.815108 TCGCTCCTCGCCCTGCTA 62.815 66.667 0.00 0.00 38.27 3.49
6960 10910 3.815569 GAGACGGCATCGCTCCTCG 62.816 68.421 0.00 0.00 40.63 4.63
6993 10951 0.108804 GACGAATGGAGAGCGGACAA 60.109 55.000 0.00 0.00 0.00 3.18
7030 10988 3.007182 AGCATGATGTTTTTCAACCCTGG 59.993 43.478 0.00 0.00 31.02 4.45
7087 11045 2.339400 GCATGCGAAAAATGTGAAGTCG 59.661 45.455 0.00 0.00 34.89 4.18
7102 11060 5.397534 GCAATAATAAGAAGTGAAGCATGCG 59.602 40.000 13.01 0.00 0.00 4.73
7249 11243 5.106078 ACAAGTCAAGAGGAACTATCTCGTC 60.106 44.000 0.00 0.00 41.55 4.20
7261 11255 2.540265 ACTGCTCACAAGTCAAGAGG 57.460 50.000 0.00 0.00 0.00 3.69
7510 11504 5.245075 TCAGTGCCGTTATATGATGTATGGA 59.755 40.000 0.00 0.00 0.00 3.41
7528 11522 4.728608 CGTACTTGTTGAACTTTTCAGTGC 59.271 41.667 0.00 0.00 41.38 4.40
7529 11523 6.102006 TCGTACTTGTTGAACTTTTCAGTG 57.898 37.500 0.00 0.00 41.38 3.66
7602 11617 1.688772 CAGATGCCAGCCAGCTTAAT 58.311 50.000 0.00 0.00 38.32 1.40
7702 11725 1.478510 AGGTGCTACTGAATCGAGTGG 59.521 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.