Multiple sequence alignment - TraesCS7B01G034000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G034000 chr7B 100.000 2705 0 0 1 2705 33596553 33599257 0.000000e+00 4996.0
1 TraesCS7B01G034000 chr7B 93.770 305 12 3 421 725 687661758 687661461 4.110000e-123 451.0
2 TraesCS7B01G034000 chr7A 90.541 1406 77 29 713 2078 85437123 85438512 0.000000e+00 1808.0
3 TraesCS7B01G034000 chr7A 90.116 344 25 5 2154 2494 85438515 85438852 3.200000e-119 438.0
4 TraesCS7B01G034000 chr7A 89.840 187 11 3 2519 2705 85438841 85439019 1.620000e-57 233.0
5 TraesCS7B01G034000 chr7D 94.141 1007 35 11 726 1722 83868025 83869017 0.000000e+00 1511.0
6 TraesCS7B01G034000 chr7D 92.500 360 18 6 1736 2088 83869263 83869620 8.640000e-140 507.0
7 TraesCS7B01G034000 chr7D 87.395 357 25 10 2157 2494 83869634 83869989 2.520000e-105 392.0
8 TraesCS7B01G034000 chr7D 91.071 224 12 5 46 265 439874741 439874522 2.040000e-76 296.0
9 TraesCS7B01G034000 chr7D 90.043 231 15 7 39 265 162766277 162766051 2.630000e-75 292.0
10 TraesCS7B01G034000 chr7D 89.030 237 15 9 33 265 4582878 4582649 1.590000e-72 283.0
11 TraesCS7B01G034000 chr7D 90.805 87 6 2 264 350 83867948 83868032 6.120000e-22 115.0
12 TraesCS7B01G034000 chr7D 97.826 46 1 0 2114 2159 632399971 632399926 2.230000e-11 80.5
13 TraesCS7B01G034000 chr7D 91.071 56 4 1 2111 2165 454088691 454088636 1.040000e-09 75.0
14 TraesCS7B01G034000 chr1A 94.464 289 13 2 415 703 571547753 571547468 2.470000e-120 442.0
15 TraesCS7B01G034000 chr1A 92.308 52 2 2 2112 2161 590819627 590819576 3.740000e-09 73.1
16 TraesCS7B01G034000 chr5B 88.767 365 32 7 342 703 225730194 225730552 3.200000e-119 438.0
17 TraesCS7B01G034000 chr5B 89.783 323 19 3 420 730 417309694 417310014 4.200000e-108 401.0
18 TraesCS7B01G034000 chr5B 93.878 49 3 0 2110 2158 541943898 541943850 1.040000e-09 75.0
19 TraesCS7B01G034000 chr5B 90.566 53 5 0 2114 2166 712411475 712411423 1.340000e-08 71.3
20 TraesCS7B01G034000 chr6B 89.045 356 31 6 351 703 658181202 658180852 4.140000e-118 435.0
21 TraesCS7B01G034000 chr6B 93.772 289 15 2 415 703 42313236 42312951 5.350000e-117 431.0
22 TraesCS7B01G034000 chr6B 89.030 237 15 6 33 265 151215839 151215610 1.590000e-72 283.0
23 TraesCS7B01G034000 chr6B 91.071 56 4 1 2112 2166 287602201 287602146 1.040000e-09 75.0
24 TraesCS7B01G034000 chr2A 94.097 288 14 3 415 702 731260950 731261234 4.140000e-118 435.0
25 TraesCS7B01G034000 chr2A 97.778 45 1 0 2114 2158 778787558 778787514 8.030000e-11 78.7
26 TraesCS7B01G034000 chr6A 88.430 363 34 6 344 703 523216660 523217017 5.350000e-117 431.0
27 TraesCS7B01G034000 chr6A 94.000 50 2 1 2111 2159 97081365 97081316 1.040000e-09 75.0
28 TraesCS7B01G034000 chr6A 89.474 57 4 2 2102 2158 37448851 37448905 1.340000e-08 71.3
29 TraesCS7B01G034000 chr4B 87.368 380 36 8 351 725 622132639 622132267 2.490000e-115 425.0
30 TraesCS7B01G034000 chr4B 88.703 239 17 7 33 265 119336738 119336504 1.590000e-72 283.0
31 TraesCS7B01G034000 chr4B 95.833 48 1 1 2112 2158 101712112 101712065 2.890000e-10 76.8
32 TraesCS7B01G034000 chr3B 87.328 363 32 8 368 725 101438448 101438095 1.170000e-108 403.0
33 TraesCS7B01G034000 chr3B 96.078 51 2 0 2109 2159 228209657 228209607 1.730000e-12 84.2
34 TraesCS7B01G034000 chr3B 94.231 52 2 1 2112 2162 265853309 265853360 8.030000e-11 78.7
35 TraesCS7B01G034000 chr1B 86.850 327 29 3 415 729 626764153 626764477 1.190000e-93 353.0
36 TraesCS7B01G034000 chr2B 85.948 306 28 4 436 728 507913005 507913308 2.020000e-81 313.0
37 TraesCS7B01G034000 chr2B 83.578 341 34 10 415 739 25261003 25261337 1.570000e-77 300.0
38 TraesCS7B01G034000 chr2B 89.451 237 14 6 33 265 95792984 95792755 3.410000e-74 289.0
39 TraesCS7B01G034000 chr2B 83.168 101 3 4 648 735 237974336 237974435 2.230000e-11 80.5
40 TraesCS7B01G034000 chr2D 91.403 221 13 4 47 265 391287708 391287492 5.660000e-77 298.0
41 TraesCS7B01G034000 chr2D 89.700 233 17 5 36 265 620551562 620551790 9.470000e-75 291.0
42 TraesCS7B01G034000 chr4A 91.111 225 10 7 46 265 94978931 94978712 2.040000e-76 296.0
43 TraesCS7B01G034000 chr4A 88.333 60 7 0 2115 2174 739593182 739593123 3.740000e-09 73.1
44 TraesCS7B01G034000 chr6D 92.727 55 2 2 2106 2159 156761441 156761494 8.030000e-11 78.7
45 TraesCS7B01G034000 chr6D 93.878 49 2 1 2112 2159 59623222 59623174 3.740000e-09 73.1
46 TraesCS7B01G034000 chr6D 95.556 45 2 0 2115 2159 163130291 163130335 3.740000e-09 73.1
47 TraesCS7B01G034000 chr6D 93.750 48 2 1 2112 2158 78083126 78083079 1.340000e-08 71.3
48 TraesCS7B01G034000 chr6D 93.750 48 2 1 2112 2158 185190042 185190089 1.340000e-08 71.3
49 TraesCS7B01G034000 chr6D 93.750 48 2 1 2112 2158 309072551 309072504 1.340000e-08 71.3
50 TraesCS7B01G034000 chr6D 95.455 44 2 0 2115 2158 334072681 334072638 1.340000e-08 71.3
51 TraesCS7B01G034000 chr6D 97.561 41 1 0 2118 2158 346980492 346980452 1.340000e-08 71.3
52 TraesCS7B01G034000 chr6D 93.750 48 2 1 2112 2158 353105796 353105843 1.340000e-08 71.3
53 TraesCS7B01G034000 chr6D 95.455 44 2 0 2115 2158 370847746 370847703 1.340000e-08 71.3
54 TraesCS7B01G034000 chr6D 92.000 50 4 0 2112 2161 443846603 443846652 1.340000e-08 71.3
55 TraesCS7B01G034000 chr1D 91.228 57 5 0 2102 2158 114350906 114350962 8.030000e-11 78.7
56 TraesCS7B01G034000 chr1D 93.878 49 2 1 2112 2159 216728433 216728481 3.740000e-09 73.1
57 TraesCS7B01G034000 chr5A 94.000 50 3 0 2118 2167 330196347 330196298 2.890000e-10 76.8
58 TraesCS7B01G034000 chr4D 95.833 48 1 1 2112 2158 218516236 218516283 2.890000e-10 76.8
59 TraesCS7B01G034000 chr4D 97.674 43 1 0 2116 2158 416070675 416070633 1.040000e-09 75.0
60 TraesCS7B01G034000 chr4D 92.308 52 2 2 2112 2162 295025769 295025719 3.740000e-09 73.1
61 TraesCS7B01G034000 chr4D 93.878 49 2 1 2112 2159 333063320 333063272 3.740000e-09 73.1
62 TraesCS7B01G034000 chr3D 95.745 47 1 1 2108 2153 27668433 27668387 1.040000e-09 75.0
63 TraesCS7B01G034000 chr3D 92.308 52 3 1 2112 2162 384726672 384726621 3.740000e-09 73.1
64 TraesCS7B01G034000 chrUn 97.619 42 1 0 2118 2159 76787394 76787435 3.740000e-09 73.1
65 TraesCS7B01G034000 chrUn 95.122 41 2 0 2119 2159 22763126 22763086 6.250000e-07 65.8
66 TraesCS7B01G034000 chrUn 91.667 48 3 1 2112 2158 22763153 22763200 6.250000e-07 65.8
67 TraesCS7B01G034000 chrUn 93.182 44 3 0 2115 2158 49143799 49143756 6.250000e-07 65.8
68 TraesCS7B01G034000 chrUn 93.333 45 2 1 2118 2162 94219292 94219335 6.250000e-07 65.8
69 TraesCS7B01G034000 chrUn 91.667 48 3 1 2112 2158 378270605 378270652 6.250000e-07 65.8
70 TraesCS7B01G034000 chrUn 91.667 48 3 1 2112 2158 447954309 447954262 6.250000e-07 65.8
71 TraesCS7B01G034000 chrUn 97.297 37 0 1 2112 2147 320620116 320620080 8.090000e-06 62.1
72 TraesCS7B01G034000 chrUn 92.683 41 3 0 2118 2158 6548674 6548634 2.910000e-05 60.2
73 TraesCS7B01G034000 chr5D 93.878 49 2 1 2112 2159 431293776 431293824 3.740000e-09 73.1
74 TraesCS7B01G034000 chr5D 93.878 49 2 1 2111 2158 500118331 500118379 3.740000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G034000 chr7B 33596553 33599257 2704 False 4996.000000 4996 100.000000 1 2705 1 chr7B.!!$F1 2704
1 TraesCS7B01G034000 chr7A 85437123 85439019 1896 False 826.333333 1808 90.165667 713 2705 3 chr7A.!!$F1 1992
2 TraesCS7B01G034000 chr7D 83867948 83869989 2041 False 631.250000 1511 91.210250 264 2494 4 chr7D.!!$F1 2230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 529 0.031449 TTTTTCGGGCCTTGCTTTCG 59.969 50.0 0.84 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1762 0.563173 ATTCGATCTCTGGGGAGGGA 59.437 55.0 0.0 0.0 39.86 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.509605 TTGTATGTTGATCGAGTTGAACG 57.490 39.130 0.00 0.00 0.00 3.95
23 24 4.552355 TGTATGTTGATCGAGTTGAACGT 58.448 39.130 0.00 0.00 0.00 3.99
24 25 5.701855 TGTATGTTGATCGAGTTGAACGTA 58.298 37.500 0.00 0.00 0.00 3.57
25 26 6.327154 TGTATGTTGATCGAGTTGAACGTAT 58.673 36.000 0.00 0.00 0.00 3.06
26 27 5.702622 ATGTTGATCGAGTTGAACGTATG 57.297 39.130 0.00 0.00 0.00 2.39
27 28 3.924073 TGTTGATCGAGTTGAACGTATGG 59.076 43.478 0.00 0.00 0.00 2.74
28 29 3.159353 TGATCGAGTTGAACGTATGGG 57.841 47.619 0.00 0.00 0.00 4.00
29 30 2.159156 TGATCGAGTTGAACGTATGGGG 60.159 50.000 0.00 0.00 0.00 4.96
30 31 0.108520 TCGAGTTGAACGTATGGGGC 60.109 55.000 0.00 0.00 0.00 5.80
31 32 0.390603 CGAGTTGAACGTATGGGGCA 60.391 55.000 0.00 0.00 0.00 5.36
32 33 1.084289 GAGTTGAACGTATGGGGCAC 58.916 55.000 0.00 0.00 0.00 5.01
33 34 0.690762 AGTTGAACGTATGGGGCACT 59.309 50.000 0.00 0.00 0.00 4.40
34 35 1.903860 AGTTGAACGTATGGGGCACTA 59.096 47.619 0.00 0.00 0.00 2.74
35 36 2.093658 AGTTGAACGTATGGGGCACTAG 60.094 50.000 0.00 0.00 0.00 2.57
36 37 0.177141 TGAACGTATGGGGCACTAGC 59.823 55.000 0.00 0.00 41.10 3.42
46 47 4.874977 GCACTAGCCGCCGTCTCC 62.875 72.222 0.00 0.00 33.58 3.71
47 48 3.141488 CACTAGCCGCCGTCTCCT 61.141 66.667 0.00 0.00 0.00 3.69
48 49 2.829458 ACTAGCCGCCGTCTCCTC 60.829 66.667 0.00 0.00 0.00 3.71
49 50 3.597728 CTAGCCGCCGTCTCCTCC 61.598 72.222 0.00 0.00 0.00 4.30
50 51 4.124943 TAGCCGCCGTCTCCTCCT 62.125 66.667 0.00 0.00 0.00 3.69
53 54 4.824515 CCGCCGTCTCCTCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
54 55 3.213402 CGCCGTCTCCTCCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
55 56 2.835895 GCCGTCTCCTCCTCCTCC 60.836 72.222 0.00 0.00 0.00 4.30
56 57 2.684104 CCGTCTCCTCCTCCTCCA 59.316 66.667 0.00 0.00 0.00 3.86
57 58 1.000486 CCGTCTCCTCCTCCTCCAA 60.000 63.158 0.00 0.00 0.00 3.53
58 59 0.614979 CCGTCTCCTCCTCCTCCAAA 60.615 60.000 0.00 0.00 0.00 3.28
59 60 1.267121 CGTCTCCTCCTCCTCCAAAA 58.733 55.000 0.00 0.00 0.00 2.44
60 61 1.623811 CGTCTCCTCCTCCTCCAAAAA 59.376 52.381 0.00 0.00 0.00 1.94
77 78 2.381752 AAAAGCTAGGGTTTGTGCCT 57.618 45.000 0.00 0.00 33.41 4.75
78 79 1.911057 AAAGCTAGGGTTTGTGCCTC 58.089 50.000 0.00 0.00 31.83 4.70
79 80 1.068121 AAGCTAGGGTTTGTGCCTCT 58.932 50.000 0.00 0.00 0.00 3.69
80 81 0.615850 AGCTAGGGTTTGTGCCTCTC 59.384 55.000 0.00 0.00 0.00 3.20
81 82 0.741221 GCTAGGGTTTGTGCCTCTCG 60.741 60.000 0.00 0.00 0.00 4.04
82 83 0.741221 CTAGGGTTTGTGCCTCTCGC 60.741 60.000 0.00 0.00 38.31 5.03
83 84 2.180159 TAGGGTTTGTGCCTCTCGCC 62.180 60.000 0.00 0.00 36.24 5.54
84 85 3.423154 GGTTTGTGCCTCTCGCCG 61.423 66.667 0.00 0.00 36.24 6.46
85 86 3.423154 GTTTGTGCCTCTCGCCGG 61.423 66.667 0.00 0.00 36.24 6.13
111 112 4.821589 CAGGCCCGCCTCGTCTTC 62.822 72.222 4.92 0.00 46.28 2.87
115 116 4.796231 CCCGCCTCGTCTTCGGTG 62.796 72.222 0.00 0.00 41.46 4.94
116 117 4.796231 CCGCCTCGTCTTCGGTGG 62.796 72.222 0.00 0.00 43.85 4.61
119 120 4.452733 CCTCGTCTTCGGTGGCCC 62.453 72.222 0.00 0.00 37.69 5.80
120 121 3.382832 CTCGTCTTCGGTGGCCCT 61.383 66.667 0.00 0.00 37.69 5.19
121 122 2.036098 TCGTCTTCGGTGGCCCTA 59.964 61.111 0.00 0.00 37.69 3.53
122 123 2.005960 CTCGTCTTCGGTGGCCCTAG 62.006 65.000 0.00 0.00 37.69 3.02
123 124 2.901042 GTCTTCGGTGGCCCTAGG 59.099 66.667 0.06 0.06 0.00 3.02
124 125 2.365105 TCTTCGGTGGCCCTAGGG 60.365 66.667 24.89 24.89 38.57 3.53
142 143 4.511246 CCATGGGGCGCAGTGGAT 62.511 66.667 20.56 0.00 33.53 3.41
143 144 2.903855 CATGGGGCGCAGTGGATC 60.904 66.667 10.83 0.00 0.00 3.36
144 145 4.195334 ATGGGGCGCAGTGGATCC 62.195 66.667 10.83 4.20 0.00 3.36
146 147 4.864334 GGGGCGCAGTGGATCCTG 62.864 72.222 14.23 4.84 35.49 3.86
147 148 4.864334 GGGCGCAGTGGATCCTGG 62.864 72.222 14.23 3.38 32.92 4.45
149 150 4.783621 GCGCAGTGGATCCTGGCA 62.784 66.667 14.23 0.00 32.37 4.92
150 151 2.046023 CGCAGTGGATCCTGGCAA 60.046 61.111 14.23 0.00 32.92 4.52
151 152 2.110967 CGCAGTGGATCCTGGCAAG 61.111 63.158 14.23 0.00 32.92 4.01
152 153 1.751927 GCAGTGGATCCTGGCAAGG 60.752 63.158 14.23 0.00 46.06 3.61
153 154 1.077212 CAGTGGATCCTGGCAAGGG 60.077 63.158 14.23 0.00 44.62 3.95
154 155 2.440980 GTGGATCCTGGCAAGGGC 60.441 66.667 14.23 0.00 44.62 5.19
176 177 3.075186 GGGGGCTCCGTTGTTAGT 58.925 61.111 0.00 0.00 0.00 2.24
177 178 1.377612 GGGGGCTCCGTTGTTAGTT 59.622 57.895 0.00 0.00 0.00 2.24
178 179 0.958876 GGGGGCTCCGTTGTTAGTTG 60.959 60.000 0.00 0.00 0.00 3.16
179 180 0.250597 GGGGCTCCGTTGTTAGTTGT 60.251 55.000 0.00 0.00 0.00 3.32
180 181 1.601166 GGGCTCCGTTGTTAGTTGTT 58.399 50.000 0.00 0.00 0.00 2.83
181 182 1.951602 GGGCTCCGTTGTTAGTTGTTT 59.048 47.619 0.00 0.00 0.00 2.83
182 183 2.031420 GGGCTCCGTTGTTAGTTGTTTC 60.031 50.000 0.00 0.00 0.00 2.78
183 184 2.876550 GGCTCCGTTGTTAGTTGTTTCT 59.123 45.455 0.00 0.00 0.00 2.52
184 185 3.314357 GGCTCCGTTGTTAGTTGTTTCTT 59.686 43.478 0.00 0.00 0.00 2.52
185 186 4.201980 GGCTCCGTTGTTAGTTGTTTCTTT 60.202 41.667 0.00 0.00 0.00 2.52
186 187 4.733405 GCTCCGTTGTTAGTTGTTTCTTTG 59.267 41.667 0.00 0.00 0.00 2.77
187 188 5.448089 GCTCCGTTGTTAGTTGTTTCTTTGA 60.448 40.000 0.00 0.00 0.00 2.69
188 189 6.114221 TCCGTTGTTAGTTGTTTCTTTGAG 57.886 37.500 0.00 0.00 0.00 3.02
189 190 5.644636 TCCGTTGTTAGTTGTTTCTTTGAGT 59.355 36.000 0.00 0.00 0.00 3.41
190 191 6.149807 TCCGTTGTTAGTTGTTTCTTTGAGTT 59.850 34.615 0.00 0.00 0.00 3.01
191 192 6.804783 CCGTTGTTAGTTGTTTCTTTGAGTTT 59.195 34.615 0.00 0.00 0.00 2.66
192 193 7.327518 CCGTTGTTAGTTGTTTCTTTGAGTTTT 59.672 33.333 0.00 0.00 0.00 2.43
193 194 8.153411 CGTTGTTAGTTGTTTCTTTGAGTTTTG 58.847 33.333 0.00 0.00 0.00 2.44
194 195 8.974408 GTTGTTAGTTGTTTCTTTGAGTTTTGT 58.026 29.630 0.00 0.00 0.00 2.83
195 196 9.535878 TTGTTAGTTGTTTCTTTGAGTTTTGTT 57.464 25.926 0.00 0.00 0.00 2.83
198 199 9.849166 TTAGTTGTTTCTTTGAGTTTTGTTAGG 57.151 29.630 0.00 0.00 0.00 2.69
199 200 7.320399 AGTTGTTTCTTTGAGTTTTGTTAGGG 58.680 34.615 0.00 0.00 0.00 3.53
200 201 6.844097 TGTTTCTTTGAGTTTTGTTAGGGT 57.156 33.333 0.00 0.00 0.00 4.34
201 202 7.234661 TGTTTCTTTGAGTTTTGTTAGGGTT 57.765 32.000 0.00 0.00 0.00 4.11
202 203 7.672240 TGTTTCTTTGAGTTTTGTTAGGGTTT 58.328 30.769 0.00 0.00 0.00 3.27
203 204 7.600752 TGTTTCTTTGAGTTTTGTTAGGGTTTG 59.399 33.333 0.00 0.00 0.00 2.93
204 205 6.844097 TCTTTGAGTTTTGTTAGGGTTTGT 57.156 33.333 0.00 0.00 0.00 2.83
205 206 6.626302 TCTTTGAGTTTTGTTAGGGTTTGTG 58.374 36.000 0.00 0.00 0.00 3.33
206 207 5.986501 TTGAGTTTTGTTAGGGTTTGTGT 57.013 34.783 0.00 0.00 0.00 3.72
207 208 5.570234 TGAGTTTTGTTAGGGTTTGTGTC 57.430 39.130 0.00 0.00 0.00 3.67
208 209 4.399934 TGAGTTTTGTTAGGGTTTGTGTCC 59.600 41.667 0.00 0.00 0.00 4.02
209 210 4.606210 AGTTTTGTTAGGGTTTGTGTCCT 58.394 39.130 0.00 0.00 37.18 3.85
210 211 5.757988 AGTTTTGTTAGGGTTTGTGTCCTA 58.242 37.500 0.00 0.00 34.75 2.94
211 212 5.591472 AGTTTTGTTAGGGTTTGTGTCCTAC 59.409 40.000 0.00 0.00 35.56 3.18
212 213 5.376756 TTTGTTAGGGTTTGTGTCCTACT 57.623 39.130 0.00 0.00 35.56 2.57
213 214 4.612264 TGTTAGGGTTTGTGTCCTACTC 57.388 45.455 0.00 0.00 35.56 2.59
214 215 3.968649 TGTTAGGGTTTGTGTCCTACTCA 59.031 43.478 0.00 0.00 35.56 3.41
215 216 4.039973 TGTTAGGGTTTGTGTCCTACTCAG 59.960 45.833 0.00 0.00 35.56 3.35
216 217 1.978580 AGGGTTTGTGTCCTACTCAGG 59.021 52.381 0.00 0.00 44.17 3.86
227 228 3.768468 CCTACTCAGGAAAGACGAGAC 57.232 52.381 0.00 0.00 45.91 3.36
228 229 2.096174 CCTACTCAGGAAAGACGAGACG 59.904 54.545 0.00 0.00 45.91 4.18
229 230 0.882474 ACTCAGGAAAGACGAGACGG 59.118 55.000 0.00 0.00 0.00 4.79
230 231 0.456995 CTCAGGAAAGACGAGACGGC 60.457 60.000 0.00 0.00 33.59 5.68
231 232 1.801913 CAGGAAAGACGAGACGGCG 60.802 63.158 4.80 4.80 41.28 6.46
232 233 2.506438 GGAAAGACGAGACGGCGG 60.506 66.667 13.24 0.00 41.28 6.13
233 234 3.179939 GAAAGACGAGACGGCGGC 61.180 66.667 13.24 8.92 41.28 6.53
250 251 3.854669 CGGCGGCTCCCTGAAGAT 61.855 66.667 7.61 0.00 0.00 2.40
251 252 2.203126 GGCGGCTCCCTGAAGATG 60.203 66.667 0.00 0.00 0.00 2.90
252 253 2.203126 GCGGCTCCCTGAAGATGG 60.203 66.667 0.00 0.00 0.00 3.51
253 254 2.735772 GCGGCTCCCTGAAGATGGA 61.736 63.158 0.00 0.00 0.00 3.41
254 255 1.907739 CGGCTCCCTGAAGATGGAA 59.092 57.895 0.00 0.00 0.00 3.53
255 256 0.471617 CGGCTCCCTGAAGATGGAAT 59.528 55.000 0.00 0.00 0.00 3.01
256 257 1.694150 CGGCTCCCTGAAGATGGAATA 59.306 52.381 0.00 0.00 0.00 1.75
257 258 2.104792 CGGCTCCCTGAAGATGGAATAA 59.895 50.000 0.00 0.00 0.00 1.40
258 259 3.433598 CGGCTCCCTGAAGATGGAATAAA 60.434 47.826 0.00 0.00 0.00 1.40
259 260 4.140536 GGCTCCCTGAAGATGGAATAAAG 58.859 47.826 0.00 0.00 0.00 1.85
260 261 4.140536 GCTCCCTGAAGATGGAATAAAGG 58.859 47.826 0.00 0.00 0.00 3.11
261 262 4.385754 GCTCCCTGAAGATGGAATAAAGGT 60.386 45.833 0.00 0.00 0.00 3.50
262 263 5.372373 CTCCCTGAAGATGGAATAAAGGTC 58.628 45.833 0.00 0.00 0.00 3.85
263 264 5.039645 TCCCTGAAGATGGAATAAAGGTCT 58.960 41.667 0.00 0.00 0.00 3.85
264 265 5.131142 TCCCTGAAGATGGAATAAAGGTCTC 59.869 44.000 0.00 0.00 0.00 3.36
265 266 5.131809 CCCTGAAGATGGAATAAAGGTCTCT 59.868 44.000 0.00 0.00 0.00 3.10
266 267 6.327626 CCCTGAAGATGGAATAAAGGTCTCTA 59.672 42.308 0.00 0.00 0.00 2.43
267 268 7.017056 CCCTGAAGATGGAATAAAGGTCTCTAT 59.983 40.741 0.00 0.00 0.00 1.98
268 269 8.435982 CCTGAAGATGGAATAAAGGTCTCTATT 58.564 37.037 0.00 0.00 0.00 1.73
269 270 9.487790 CTGAAGATGGAATAAAGGTCTCTATTC 57.512 37.037 0.00 0.00 34.92 1.75
274 275 4.750598 GGAATAAAGGTCTCTATTCGGTGC 59.249 45.833 0.00 0.00 36.01 5.01
279 280 1.022735 GTCTCTATTCGGTGCGAGGA 58.977 55.000 0.00 0.00 37.14 3.71
285 286 1.330655 ATTCGGTGCGAGGAGTGGAT 61.331 55.000 0.00 0.00 37.14 3.41
293 294 5.394224 CGGTGCGAGGAGTGGATAATAATAT 60.394 44.000 0.00 0.00 0.00 1.28
294 295 5.812642 GGTGCGAGGAGTGGATAATAATATG 59.187 44.000 0.00 0.00 0.00 1.78
347 348 2.190313 GCCCCATGCATCGTCTGA 59.810 61.111 0.00 0.00 40.77 3.27
348 349 1.451927 GCCCCATGCATCGTCTGAA 60.452 57.895 0.00 0.00 40.77 3.02
349 350 1.718757 GCCCCATGCATCGTCTGAAC 61.719 60.000 0.00 0.00 40.77 3.18
350 351 0.107508 CCCCATGCATCGTCTGAACT 60.108 55.000 0.00 0.00 0.00 3.01
351 352 1.138859 CCCCATGCATCGTCTGAACTA 59.861 52.381 0.00 0.00 0.00 2.24
352 353 2.419990 CCCCATGCATCGTCTGAACTAA 60.420 50.000 0.00 0.00 0.00 2.24
353 354 3.270027 CCCATGCATCGTCTGAACTAAA 58.730 45.455 0.00 0.00 0.00 1.85
354 355 3.063997 CCCATGCATCGTCTGAACTAAAC 59.936 47.826 0.00 0.00 0.00 2.01
355 356 3.242091 CCATGCATCGTCTGAACTAAACG 60.242 47.826 0.00 0.00 37.74 3.60
356 357 1.724623 TGCATCGTCTGAACTAAACGC 59.275 47.619 0.00 0.00 36.40 4.84
357 358 1.266404 GCATCGTCTGAACTAAACGCG 60.266 52.381 3.53 3.53 36.40 6.01
358 359 1.320555 CATCGTCTGAACTAAACGCGG 59.679 52.381 12.47 0.00 36.40 6.46
359 360 0.387622 TCGTCTGAACTAAACGCGGG 60.388 55.000 12.47 0.00 36.40 6.13
360 361 1.785951 GTCTGAACTAAACGCGGGC 59.214 57.895 12.47 0.00 0.00 6.13
361 362 0.947180 GTCTGAACTAAACGCGGGCA 60.947 55.000 12.47 0.00 0.00 5.36
362 363 0.036765 TCTGAACTAAACGCGGGCAT 60.037 50.000 12.47 0.00 0.00 4.40
363 364 0.096976 CTGAACTAAACGCGGGCATG 59.903 55.000 12.47 0.00 0.00 4.06
364 365 1.302383 TGAACTAAACGCGGGCATGG 61.302 55.000 12.47 0.00 0.00 3.66
365 366 1.988834 GAACTAAACGCGGGCATGGG 61.989 60.000 12.47 0.00 0.00 4.00
366 367 3.887868 CTAAACGCGGGCATGGGC 61.888 66.667 12.47 0.00 40.13 5.36
367 368 4.724501 TAAACGCGGGCATGGGCA 62.725 61.111 12.47 0.00 43.71 5.36
383 384 4.050934 CAGCCCGGCCCGAAAAAC 62.051 66.667 3.71 0.00 0.00 2.43
422 423 4.760047 CTTGACACTCGGCCCGGG 62.760 72.222 19.09 19.09 0.00 5.73
437 438 4.021925 GGGCTCGGGCTTGACACT 62.022 66.667 7.48 0.00 38.73 3.55
438 439 2.435059 GGCTCGGGCTTGACACTC 60.435 66.667 7.48 0.00 38.73 3.51
439 440 2.811317 GCTCGGGCTTGACACTCG 60.811 66.667 0.00 0.00 35.22 4.18
440 441 2.125912 CTCGGGCTTGACACTCGG 60.126 66.667 0.00 0.00 0.00 4.63
441 442 4.373116 TCGGGCTTGACACTCGGC 62.373 66.667 0.00 0.00 0.00 5.54
446 447 4.760047 CTTGACACTCGGCCCGGG 62.760 72.222 19.09 19.09 0.00 5.73
460 461 2.983592 CGGGCTCGGGCTTTGTTT 60.984 61.111 7.48 0.00 38.73 2.83
461 462 2.561037 CGGGCTCGGGCTTTGTTTT 61.561 57.895 7.48 0.00 38.73 2.43
462 463 1.006220 GGGCTCGGGCTTTGTTTTG 60.006 57.895 7.48 0.00 38.73 2.44
463 464 1.664649 GGCTCGGGCTTTGTTTTGC 60.665 57.895 7.48 0.00 38.73 3.68
464 465 1.067250 GCTCGGGCTTTGTTTTGCA 59.933 52.632 0.00 0.00 35.22 4.08
465 466 0.940991 GCTCGGGCTTTGTTTTGCAG 60.941 55.000 0.00 0.00 35.22 4.41
466 467 0.940991 CTCGGGCTTTGTTTTGCAGC 60.941 55.000 0.00 0.00 0.00 5.25
467 468 2.302230 CGGGCTTTGTTTTGCAGCG 61.302 57.895 0.00 0.00 0.00 5.18
468 469 2.597713 GGGCTTTGTTTTGCAGCGC 61.598 57.895 0.00 0.00 0.00 5.92
469 470 2.540953 GCTTTGTTTTGCAGCGCG 59.459 55.556 0.00 0.00 0.00 6.86
470 471 1.943693 GCTTTGTTTTGCAGCGCGA 60.944 52.632 12.10 0.00 0.00 5.87
471 472 1.869242 GCTTTGTTTTGCAGCGCGAG 61.869 55.000 12.10 1.41 0.00 5.03
472 473 0.316937 CTTTGTTTTGCAGCGCGAGA 60.317 50.000 12.10 0.00 0.00 4.04
473 474 0.099613 TTTGTTTTGCAGCGCGAGAA 59.900 45.000 12.10 0.00 0.00 2.87
474 475 0.316937 TTGTTTTGCAGCGCGAGAAG 60.317 50.000 12.10 0.00 0.00 2.85
475 476 1.279840 GTTTTGCAGCGCGAGAAGT 59.720 52.632 12.10 0.00 0.00 3.01
476 477 0.511221 GTTTTGCAGCGCGAGAAGTA 59.489 50.000 12.10 0.00 0.00 2.24
477 478 0.790207 TTTTGCAGCGCGAGAAGTAG 59.210 50.000 12.10 0.00 0.00 2.57
478 479 0.319555 TTTGCAGCGCGAGAAGTAGT 60.320 50.000 12.10 0.00 0.00 2.73
479 480 0.319555 TTGCAGCGCGAGAAGTAGTT 60.320 50.000 12.10 0.00 0.00 2.24
480 481 0.732880 TGCAGCGCGAGAAGTAGTTC 60.733 55.000 12.10 1.75 0.00 3.01
481 482 1.734359 GCAGCGCGAGAAGTAGTTCG 61.734 60.000 12.10 0.00 37.79 3.95
482 483 1.134530 CAGCGCGAGAAGTAGTTCGG 61.135 60.000 12.10 2.83 37.79 4.30
483 484 4.379221 CGCGAGAAGTAGTTCGGG 57.621 61.111 0.00 0.00 42.01 5.14
484 485 1.872679 CGCGAGAAGTAGTTCGGGC 60.873 63.158 0.00 14.83 41.62 6.13
485 486 1.518792 GCGAGAAGTAGTTCGGGCC 60.519 63.158 14.20 0.00 37.79 5.80
486 487 1.226603 CGAGAAGTAGTTCGGGCCG 60.227 63.158 22.51 22.51 37.79 6.13
487 488 1.141234 GAGAAGTAGTTCGGGCCGG 59.859 63.158 27.98 7.65 37.79 6.13
488 489 2.186125 GAAGTAGTTCGGGCCGGG 59.814 66.667 27.98 0.00 0.00 5.73
489 490 4.091939 AAGTAGTTCGGGCCGGGC 62.092 66.667 27.98 22.00 0.00 6.13
491 492 4.525949 GTAGTTCGGGCCGGGCTC 62.526 72.222 28.80 15.19 0.00 4.70
502 503 3.775654 CGGGCTCGGGCTTCTCTT 61.776 66.667 7.48 0.00 38.73 2.85
503 504 2.671682 GGGCTCGGGCTTCTCTTT 59.328 61.111 7.48 0.00 38.73 2.52
504 505 1.002011 GGGCTCGGGCTTCTCTTTT 60.002 57.895 7.48 0.00 38.73 2.27
505 506 0.609406 GGGCTCGGGCTTCTCTTTTT 60.609 55.000 7.48 0.00 38.73 1.94
506 507 0.805614 GGCTCGGGCTTCTCTTTTTC 59.194 55.000 7.48 0.00 38.73 2.29
507 508 1.611936 GGCTCGGGCTTCTCTTTTTCT 60.612 52.381 7.48 0.00 38.73 2.52
508 509 2.354805 GGCTCGGGCTTCTCTTTTTCTA 60.355 50.000 7.48 0.00 38.73 2.10
509 510 3.536570 GCTCGGGCTTCTCTTTTTCTAT 58.463 45.455 0.00 0.00 35.22 1.98
510 511 3.942115 GCTCGGGCTTCTCTTTTTCTATT 59.058 43.478 0.00 0.00 35.22 1.73
511 512 4.396478 GCTCGGGCTTCTCTTTTTCTATTT 59.604 41.667 0.00 0.00 35.22 1.40
512 513 5.106118 GCTCGGGCTTCTCTTTTTCTATTTT 60.106 40.000 0.00 0.00 35.22 1.82
513 514 6.570571 GCTCGGGCTTCTCTTTTTCTATTTTT 60.571 38.462 0.00 0.00 35.22 1.94
514 515 6.909909 TCGGGCTTCTCTTTTTCTATTTTTC 58.090 36.000 0.00 0.00 0.00 2.29
515 516 5.795441 CGGGCTTCTCTTTTTCTATTTTTCG 59.205 40.000 0.00 0.00 0.00 3.46
516 517 6.093404 GGGCTTCTCTTTTTCTATTTTTCGG 58.907 40.000 0.00 0.00 0.00 4.30
517 518 6.093404 GGCTTCTCTTTTTCTATTTTTCGGG 58.907 40.000 0.00 0.00 0.00 5.14
518 519 5.573282 GCTTCTCTTTTTCTATTTTTCGGGC 59.427 40.000 0.00 0.00 0.00 6.13
519 520 5.638596 TCTCTTTTTCTATTTTTCGGGCC 57.361 39.130 0.00 0.00 0.00 5.80
520 521 5.321927 TCTCTTTTTCTATTTTTCGGGCCT 58.678 37.500 0.84 0.00 0.00 5.19
521 522 5.773176 TCTCTTTTTCTATTTTTCGGGCCTT 59.227 36.000 0.84 0.00 0.00 4.35
522 523 5.778862 TCTTTTTCTATTTTTCGGGCCTTG 58.221 37.500 0.84 0.00 0.00 3.61
523 524 3.586100 TTTCTATTTTTCGGGCCTTGC 57.414 42.857 0.84 0.00 0.00 4.01
524 525 2.507407 TCTATTTTTCGGGCCTTGCT 57.493 45.000 0.84 0.00 0.00 3.91
525 526 2.802719 TCTATTTTTCGGGCCTTGCTT 58.197 42.857 0.84 0.00 0.00 3.91
526 527 3.161866 TCTATTTTTCGGGCCTTGCTTT 58.838 40.909 0.84 0.00 0.00 3.51
527 528 2.455674 ATTTTTCGGGCCTTGCTTTC 57.544 45.000 0.84 0.00 0.00 2.62
528 529 0.031449 TTTTTCGGGCCTTGCTTTCG 59.969 50.000 0.84 0.00 0.00 3.46
529 530 1.801309 TTTTCGGGCCTTGCTTTCGG 61.801 55.000 0.84 0.00 0.00 4.30
530 531 4.715523 TCGGGCCTTGCTTTCGGG 62.716 66.667 0.84 0.00 0.00 5.14
533 534 2.991540 GGCCTTGCTTTCGGGCTT 60.992 61.111 0.00 0.00 44.70 4.35
534 535 2.568612 GCCTTGCTTTCGGGCTTC 59.431 61.111 0.00 0.00 42.31 3.86
535 536 2.870372 CCTTGCTTTCGGGCTTCG 59.130 61.111 0.00 0.00 40.90 3.79
536 537 2.690778 CCTTGCTTTCGGGCTTCGG 61.691 63.158 0.75 0.00 39.77 4.30
537 538 2.671619 TTGCTTTCGGGCTTCGGG 60.672 61.111 0.75 0.00 39.77 5.14
555 556 3.419759 CCGGGCTTGCACGTACAC 61.420 66.667 16.16 0.00 0.00 2.90
556 557 3.773630 CGGGCTTGCACGTACACG 61.774 66.667 9.28 0.00 46.33 4.49
580 581 2.330041 AAAAACAGCGTTCGGGCG 59.670 55.556 0.00 0.00 38.18 6.13
581 582 3.189010 AAAAACAGCGTTCGGGCGG 62.189 57.895 2.20 0.00 38.18 6.13
601 602 2.359975 CTTTCGGGCTTCGGGCTT 60.360 61.111 1.83 0.00 41.46 4.35
602 603 2.671619 TTTCGGGCTTCGGGCTTG 60.672 61.111 1.83 0.00 41.46 4.01
603 604 3.185299 TTTCGGGCTTCGGGCTTGA 62.185 57.895 1.83 0.00 41.46 3.02
604 605 2.478335 TTTCGGGCTTCGGGCTTGAT 62.478 55.000 1.83 0.00 41.46 2.57
605 606 2.438434 CGGGCTTCGGGCTTGATT 60.438 61.111 1.83 0.00 41.46 2.57
606 607 2.046285 CGGGCTTCGGGCTTGATTT 61.046 57.895 1.83 0.00 41.46 2.17
607 608 1.809869 GGGCTTCGGGCTTGATTTC 59.190 57.895 1.83 0.00 41.46 2.17
608 609 1.429423 GGCTTCGGGCTTGATTTCG 59.571 57.895 1.83 0.00 41.46 3.46
609 610 1.429423 GCTTCGGGCTTGATTTCGG 59.571 57.895 0.00 0.00 38.06 4.30
610 611 1.993369 GCTTCGGGCTTGATTTCGGG 61.993 60.000 0.00 0.00 38.06 5.14
611 612 0.676782 CTTCGGGCTTGATTTCGGGT 60.677 55.000 0.00 0.00 0.00 5.28
612 613 0.675522 TTCGGGCTTGATTTCGGGTC 60.676 55.000 0.00 0.00 0.00 4.46
613 614 2.461110 CGGGCTTGATTTCGGGTCG 61.461 63.158 0.00 0.00 0.00 4.79
614 615 2.112815 GGGCTTGATTTCGGGTCGG 61.113 63.158 0.00 0.00 0.00 4.79
615 616 2.112815 GGCTTGATTTCGGGTCGGG 61.113 63.158 0.00 0.00 0.00 5.14
616 617 2.761195 GCTTGATTTCGGGTCGGGC 61.761 63.158 0.00 0.00 0.00 6.13
617 618 1.078426 CTTGATTTCGGGTCGGGCT 60.078 57.895 0.00 0.00 0.00 5.19
618 619 1.078708 TTGATTTCGGGTCGGGCTC 60.079 57.895 0.00 0.00 0.00 4.70
619 620 1.832719 TTGATTTCGGGTCGGGCTCA 61.833 55.000 0.00 0.00 0.00 4.26
620 621 1.521681 GATTTCGGGTCGGGCTCAG 60.522 63.158 0.00 0.00 0.00 3.35
621 622 2.925162 GATTTCGGGTCGGGCTCAGG 62.925 65.000 0.00 0.00 0.00 3.86
625 626 4.785453 GGGTCGGGCTCAGGCTTG 62.785 72.222 0.00 0.00 38.73 4.01
626 627 3.706373 GGTCGGGCTCAGGCTTGA 61.706 66.667 0.00 0.00 38.73 3.02
627 628 2.586792 GTCGGGCTCAGGCTTGAT 59.413 61.111 0.00 0.00 38.73 2.57
628 629 1.078143 GTCGGGCTCAGGCTTGATT 60.078 57.895 0.00 0.00 38.73 2.57
629 630 0.678048 GTCGGGCTCAGGCTTGATTT 60.678 55.000 0.00 0.00 38.73 2.17
630 631 0.392998 TCGGGCTCAGGCTTGATTTC 60.393 55.000 0.00 0.00 38.73 2.17
631 632 0.677731 CGGGCTCAGGCTTGATTTCA 60.678 55.000 0.00 0.00 38.73 2.69
632 633 1.101331 GGGCTCAGGCTTGATTTCAG 58.899 55.000 0.00 0.00 38.73 3.02
633 634 1.101331 GGCTCAGGCTTGATTTCAGG 58.899 55.000 0.00 0.00 38.73 3.86
634 635 1.101331 GCTCAGGCTTGATTTCAGGG 58.899 55.000 0.00 0.00 35.22 4.45
635 636 1.340405 GCTCAGGCTTGATTTCAGGGA 60.340 52.381 0.00 0.00 35.22 4.20
636 637 2.641305 CTCAGGCTTGATTTCAGGGAG 58.359 52.381 0.00 0.00 31.68 4.30
637 638 1.988107 TCAGGCTTGATTTCAGGGAGT 59.012 47.619 0.00 0.00 0.00 3.85
638 639 3.181329 TCAGGCTTGATTTCAGGGAGTA 58.819 45.455 0.00 0.00 0.00 2.59
639 640 3.782523 TCAGGCTTGATTTCAGGGAGTAT 59.217 43.478 0.00 0.00 0.00 2.12
640 641 4.228210 TCAGGCTTGATTTCAGGGAGTATT 59.772 41.667 0.00 0.00 0.00 1.89
641 642 4.952335 CAGGCTTGATTTCAGGGAGTATTT 59.048 41.667 0.00 0.00 0.00 1.40
642 643 5.067023 CAGGCTTGATTTCAGGGAGTATTTC 59.933 44.000 0.00 0.00 0.00 2.17
643 644 4.035675 GGCTTGATTTCAGGGAGTATTTCG 59.964 45.833 0.00 0.00 0.00 3.46
644 645 4.035675 GCTTGATTTCAGGGAGTATTTCGG 59.964 45.833 0.00 0.00 0.00 4.30
645 646 4.150897 TGATTTCAGGGAGTATTTCGGG 57.849 45.455 0.00 0.00 0.00 5.14
646 647 2.413310 TTTCAGGGAGTATTTCGGGC 57.587 50.000 0.00 0.00 0.00 6.13
647 648 1.580059 TTCAGGGAGTATTTCGGGCT 58.420 50.000 0.00 0.00 0.00 5.19
648 649 1.580059 TCAGGGAGTATTTCGGGCTT 58.420 50.000 0.00 0.00 0.00 4.35
649 650 1.485066 TCAGGGAGTATTTCGGGCTTC 59.515 52.381 0.00 0.00 0.00 3.86
650 651 0.464452 AGGGAGTATTTCGGGCTTCG 59.536 55.000 0.00 0.00 40.90 3.79
651 652 0.532196 GGGAGTATTTCGGGCTTCGG 60.532 60.000 0.75 0.00 39.77 4.30
652 653 0.462789 GGAGTATTTCGGGCTTCGGA 59.537 55.000 0.75 0.00 39.77 4.55
653 654 1.568606 GAGTATTTCGGGCTTCGGAC 58.431 55.000 0.75 0.00 39.77 4.79
654 655 1.136500 GAGTATTTCGGGCTTCGGACT 59.864 52.381 0.75 0.00 39.77 3.85
655 656 1.134788 AGTATTTCGGGCTTCGGACTG 60.135 52.381 0.75 0.00 39.77 3.51
656 657 0.177141 TATTTCGGGCTTCGGACTGG 59.823 55.000 0.75 0.00 39.77 4.00
657 658 2.536997 ATTTCGGGCTTCGGACTGGG 62.537 60.000 0.75 0.00 39.77 4.45
660 661 4.475135 GGGCTTCGGACTGGGCTC 62.475 72.222 0.00 0.00 0.00 4.70
661 662 4.821589 GGCTTCGGACTGGGCTCG 62.822 72.222 0.00 0.00 0.00 5.03
662 663 4.821589 GCTTCGGACTGGGCTCGG 62.822 72.222 0.00 0.00 0.00 4.63
663 664 4.148825 CTTCGGACTGGGCTCGGG 62.149 72.222 0.00 0.00 0.00 5.14
667 668 4.785453 GGACTGGGCTCGGGCTTG 62.785 72.222 7.48 0.00 38.73 4.01
668 669 3.706373 GACTGGGCTCGGGCTTGA 61.706 66.667 7.48 0.00 38.73 3.02
669 670 3.672295 GACTGGGCTCGGGCTTGAG 62.672 68.421 7.48 2.91 39.05 3.02
670 671 3.393970 CTGGGCTCGGGCTTGAGA 61.394 66.667 7.48 0.00 38.28 3.27
671 672 2.927856 TGGGCTCGGGCTTGAGAA 60.928 61.111 7.48 0.00 38.28 2.87
672 673 2.351276 GGGCTCGGGCTTGAGAAA 59.649 61.111 7.48 0.00 38.28 2.52
673 674 1.077429 GGGCTCGGGCTTGAGAAAT 60.077 57.895 7.48 0.00 38.28 2.17
674 675 1.379642 GGGCTCGGGCTTGAGAAATG 61.380 60.000 7.48 0.00 38.28 2.32
675 676 0.392998 GGCTCGGGCTTGAGAAATGA 60.393 55.000 7.48 0.00 38.28 2.57
676 677 1.453155 GCTCGGGCTTGAGAAATGAA 58.547 50.000 0.00 0.00 38.28 2.57
677 678 1.399791 GCTCGGGCTTGAGAAATGAAG 59.600 52.381 0.00 0.00 38.28 3.02
678 679 2.012673 CTCGGGCTTGAGAAATGAAGG 58.987 52.381 1.75 0.00 38.28 3.46
679 680 1.351017 TCGGGCTTGAGAAATGAAGGT 59.649 47.619 0.00 0.00 0.00 3.50
680 681 1.740025 CGGGCTTGAGAAATGAAGGTC 59.260 52.381 0.00 0.00 0.00 3.85
681 682 1.740025 GGGCTTGAGAAATGAAGGTCG 59.260 52.381 0.00 0.00 0.00 4.79
682 683 1.740025 GGCTTGAGAAATGAAGGTCGG 59.260 52.381 0.00 0.00 0.00 4.79
683 684 1.740025 GCTTGAGAAATGAAGGTCGGG 59.260 52.381 0.00 0.00 0.00 5.14
684 685 1.740025 CTTGAGAAATGAAGGTCGGGC 59.260 52.381 0.00 0.00 0.00 6.13
685 686 0.984230 TGAGAAATGAAGGTCGGGCT 59.016 50.000 0.00 0.00 0.00 5.19
686 687 1.351017 TGAGAAATGAAGGTCGGGCTT 59.649 47.619 0.00 0.00 0.00 4.35
687 688 2.224769 TGAGAAATGAAGGTCGGGCTTT 60.225 45.455 0.00 0.00 0.00 3.51
688 689 2.820197 GAGAAATGAAGGTCGGGCTTTT 59.180 45.455 0.00 0.00 0.00 2.27
689 690 4.007659 GAGAAATGAAGGTCGGGCTTTTA 58.992 43.478 0.00 0.00 0.00 1.52
690 691 3.756963 AGAAATGAAGGTCGGGCTTTTAC 59.243 43.478 0.00 0.00 0.00 2.01
691 692 2.871096 ATGAAGGTCGGGCTTTTACA 57.129 45.000 0.00 0.00 0.00 2.41
692 693 2.642154 TGAAGGTCGGGCTTTTACAA 57.358 45.000 0.00 0.00 0.00 2.41
693 694 2.500229 TGAAGGTCGGGCTTTTACAAG 58.500 47.619 0.00 0.00 0.00 3.16
701 702 3.284336 CTTTTACAAGCCCGGCCC 58.716 61.111 5.55 0.00 0.00 5.80
702 703 2.673687 TTTTACAAGCCCGGCCCG 60.674 61.111 5.55 0.00 0.00 6.13
721 722 4.636435 CCCGACGTTTGCCCAGGT 62.636 66.667 0.00 0.00 0.00 4.00
722 723 2.593436 CCGACGTTTGCCCAGGTT 60.593 61.111 0.00 0.00 0.00 3.50
724 725 0.885596 CCGACGTTTGCCCAGGTTTA 60.886 55.000 0.00 0.00 0.00 2.01
728 729 1.142262 ACGTTTGCCCAGGTTTAGTCT 59.858 47.619 0.00 0.00 0.00 3.24
729 730 1.535462 CGTTTGCCCAGGTTTAGTCTG 59.465 52.381 0.00 0.00 0.00 3.51
755 756 3.949754 CACCCACGATCTACTACTACCAA 59.050 47.826 0.00 0.00 0.00 3.67
810 815 3.710722 CCGCTGCCCTCTTCCACT 61.711 66.667 0.00 0.00 0.00 4.00
892 906 2.029380 TCATATATTAGCCGCTGCGTGT 60.029 45.455 21.59 9.89 44.33 4.49
938 952 2.902846 CCCGCGGACAAACCAACA 60.903 61.111 30.73 0.00 38.90 3.33
940 954 2.052590 CGCGGACAAACCAACACG 60.053 61.111 0.00 0.00 38.90 4.49
941 955 2.353030 GCGGACAAACCAACACGC 60.353 61.111 0.00 0.00 40.19 5.34
1120 1136 0.809385 CGGCGAGAAGTCCAAGAGTA 59.191 55.000 0.00 0.00 0.00 2.59
1121 1137 1.201647 CGGCGAGAAGTCCAAGAGTAA 59.798 52.381 0.00 0.00 0.00 2.24
1122 1138 2.608268 GGCGAGAAGTCCAAGAGTAAC 58.392 52.381 0.00 0.00 0.00 2.50
1123 1139 2.029290 GGCGAGAAGTCCAAGAGTAACA 60.029 50.000 0.00 0.00 0.00 2.41
1131 1150 0.872388 CCAAGAGTAACAACCACGGC 59.128 55.000 0.00 0.00 0.00 5.68
1172 1194 4.144727 GGCGGAGGAGAGGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
1221 1243 1.141881 CCTGGGGATCGTGTTCTCG 59.858 63.158 0.00 0.00 0.00 4.04
1470 1492 2.284151 GAGGGGGAGGAGGAGGAC 59.716 72.222 0.00 0.00 0.00 3.85
1473 1495 2.442458 GGGGAGGAGGAGGACGAC 60.442 72.222 0.00 0.00 0.00 4.34
1726 1754 1.847968 CACCCCCACTCCACCTTCT 60.848 63.158 0.00 0.00 0.00 2.85
1728 1756 1.134438 ACCCCCACTCCACCTTCTTC 61.134 60.000 0.00 0.00 0.00 2.87
1734 1762 2.903135 CCACTCCACCTTCTTCTTCTCT 59.097 50.000 0.00 0.00 0.00 3.10
1750 2010 0.539438 CTCTCCCTCCCCAGAGATCG 60.539 65.000 0.00 0.00 43.39 3.69
1753 2013 0.563173 TCCCTCCCCAGAGATCGAAT 59.437 55.000 0.00 0.00 43.39 3.34
1806 2066 1.728971 CGTTGTTGGTGATCTGCTCTC 59.271 52.381 0.00 0.00 0.00 3.20
1953 2223 3.819368 TGCTGATCAACTTGGTTTCTCA 58.181 40.909 0.00 0.00 0.00 3.27
1978 2248 3.062763 CCTCTGCTGTGTTACTGACAAG 58.937 50.000 0.00 0.00 40.65 3.16
1979 2249 2.478134 CTCTGCTGTGTTACTGACAAGC 59.522 50.000 0.00 0.00 40.65 4.01
2030 2301 1.028905 CTTGGTCGGCTGGTGAAAAA 58.971 50.000 0.00 0.00 0.00 1.94
2031 2302 1.613437 CTTGGTCGGCTGGTGAAAAAT 59.387 47.619 0.00 0.00 0.00 1.82
2032 2303 1.698506 TGGTCGGCTGGTGAAAAATT 58.301 45.000 0.00 0.00 0.00 1.82
2045 2316 7.094634 GCTGGTGAAAAATTAAGATCTCACTCA 60.095 37.037 0.00 0.00 34.85 3.41
2050 2325 8.795513 TGAAAAATTAAGATCTCACTCAATGCA 58.204 29.630 0.00 0.00 0.00 3.96
2055 2330 8.618702 ATTAAGATCTCACTCAATGCATAAGG 57.381 34.615 0.00 0.00 0.00 2.69
2065 2340 3.639538 CAATGCATAAGGATTGCTCTGC 58.360 45.455 0.00 5.94 44.72 4.26
2084 2359 1.001048 GCTGCTGTGCTTGTGAAATGA 60.001 47.619 0.00 0.00 0.00 2.57
2088 2363 3.057806 TGCTGTGCTTGTGAAATGATCAG 60.058 43.478 0.09 0.00 39.19 2.90
2091 2366 3.884693 TGTGCTTGTGAAATGATCAGTGT 59.115 39.130 0.09 0.00 39.19 3.55
2094 2369 5.400485 GTGCTTGTGAAATGATCAGTGTTTC 59.600 40.000 11.66 11.66 39.19 2.78
2095 2370 5.300034 TGCTTGTGAAATGATCAGTGTTTCT 59.700 36.000 17.05 0.00 39.19 2.52
2098 2373 7.306399 GCTTGTGAAATGATCAGTGTTTCTTTG 60.306 37.037 17.05 8.91 39.19 2.77
2099 2374 5.978919 TGTGAAATGATCAGTGTTTCTTTGC 59.021 36.000 17.05 8.60 39.19 3.68
2101 2376 5.978919 TGAAATGATCAGTGTTTCTTTGCAC 59.021 36.000 17.05 0.00 33.99 4.57
2102 2377 5.779529 AATGATCAGTGTTTCTTTGCACT 57.220 34.783 0.09 0.00 45.69 4.40
2103 2378 5.779529 ATGATCAGTGTTTCTTTGCACTT 57.220 34.783 0.09 0.00 43.27 3.16
2104 2379 4.923893 TGATCAGTGTTTCTTTGCACTTG 58.076 39.130 0.00 0.00 43.27 3.16
2105 2380 4.398988 TGATCAGTGTTTCTTTGCACTTGT 59.601 37.500 0.00 0.00 43.27 3.16
2106 2381 4.782019 TCAGTGTTTCTTTGCACTTGTT 57.218 36.364 0.00 0.00 43.27 2.83
2107 2382 5.888691 TCAGTGTTTCTTTGCACTTGTTA 57.111 34.783 0.00 0.00 43.27 2.41
2108 2383 6.260870 TCAGTGTTTCTTTGCACTTGTTAA 57.739 33.333 0.00 0.00 43.27 2.01
2109 2384 6.862209 TCAGTGTTTCTTTGCACTTGTTAAT 58.138 32.000 0.00 0.00 43.27 1.40
2110 2385 7.319646 TCAGTGTTTCTTTGCACTTGTTAATT 58.680 30.769 0.00 0.00 43.27 1.40
2111 2386 8.462811 TCAGTGTTTCTTTGCACTTGTTAATTA 58.537 29.630 0.00 0.00 43.27 1.40
2112 2387 8.531530 CAGTGTTTCTTTGCACTTGTTAATTAC 58.468 33.333 0.00 0.00 43.27 1.89
2113 2388 8.466798 AGTGTTTCTTTGCACTTGTTAATTACT 58.533 29.630 0.00 0.00 42.61 2.24
2114 2389 8.743099 GTGTTTCTTTGCACTTGTTAATTACTC 58.257 33.333 0.00 0.00 33.22 2.59
2115 2390 8.462811 TGTTTCTTTGCACTTGTTAATTACTCA 58.537 29.630 0.00 0.00 0.00 3.41
2116 2391 8.743099 GTTTCTTTGCACTTGTTAATTACTCAC 58.257 33.333 0.00 0.00 0.00 3.51
2117 2392 7.801716 TCTTTGCACTTGTTAATTACTCACT 57.198 32.000 0.00 0.00 0.00 3.41
2118 2393 8.896320 TCTTTGCACTTGTTAATTACTCACTA 57.104 30.769 0.00 0.00 0.00 2.74
2119 2394 8.988934 TCTTTGCACTTGTTAATTACTCACTAG 58.011 33.333 0.00 0.00 0.00 2.57
2120 2395 8.671384 TTTGCACTTGTTAATTACTCACTAGT 57.329 30.769 0.00 0.00 39.91 2.57
2121 2396 7.652300 TGCACTTGTTAATTACTCACTAGTG 57.348 36.000 17.17 17.17 43.14 2.74
2122 2397 7.214381 TGCACTTGTTAATTACTCACTAGTGT 58.786 34.615 21.99 6.99 42.61 3.55
2123 2398 8.361889 TGCACTTGTTAATTACTCACTAGTGTA 58.638 33.333 21.99 17.27 42.61 2.90
2124 2399 9.199982 GCACTTGTTAATTACTCACTAGTGTAA 57.800 33.333 21.99 14.38 42.61 2.41
2148 2423 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2149 2424 5.717078 AACGCTCTTATATTATGGGACGA 57.283 39.130 0.00 0.00 0.00 4.20
2150 2425 5.717078 ACGCTCTTATATTATGGGACGAA 57.283 39.130 0.00 0.00 0.00 3.85
2151 2426 5.710984 ACGCTCTTATATTATGGGACGAAG 58.289 41.667 0.00 0.00 0.00 3.79
2152 2427 5.103000 CGCTCTTATATTATGGGACGAAGG 58.897 45.833 0.00 0.00 0.00 3.46
2153 2428 5.105877 CGCTCTTATATTATGGGACGAAGGA 60.106 44.000 0.00 0.00 0.00 3.36
2154 2429 6.571731 CGCTCTTATATTATGGGACGAAGGAA 60.572 42.308 0.00 0.00 0.00 3.36
2155 2430 6.814146 GCTCTTATATTATGGGACGAAGGAAG 59.186 42.308 0.00 0.00 0.00 3.46
2165 2440 2.614481 GGACGAAGGAAGTATGTGCCAA 60.614 50.000 0.00 0.00 0.00 4.52
2227 2506 3.063510 TGTCCATGAAGAAAGCCAGAG 57.936 47.619 0.00 0.00 0.00 3.35
2237 2516 4.545208 AGAAAGCCAGAGAGAAAGTACC 57.455 45.455 0.00 0.00 0.00 3.34
2238 2517 4.164204 AGAAAGCCAGAGAGAAAGTACCT 58.836 43.478 0.00 0.00 0.00 3.08
2239 2518 5.334421 AGAAAGCCAGAGAGAAAGTACCTA 58.666 41.667 0.00 0.00 0.00 3.08
2240 2519 5.961421 AGAAAGCCAGAGAGAAAGTACCTAT 59.039 40.000 0.00 0.00 0.00 2.57
2290 2584 2.159517 GCCATCTTACGCTGTCAAAAGG 60.160 50.000 0.00 0.00 0.00 3.11
2295 2589 5.821516 TCTTACGCTGTCAAAAGGAAAAA 57.178 34.783 0.00 0.00 0.00 1.94
2320 2614 4.152647 ACATCTGGAGACTGAGTTGTGTA 58.847 43.478 0.00 0.00 41.91 2.90
2321 2615 4.021894 ACATCTGGAGACTGAGTTGTGTAC 60.022 45.833 0.00 0.00 41.91 2.90
2375 2673 4.764679 ACAAATCAATGTGCACATACGT 57.235 36.364 31.55 14.65 35.10 3.57
2392 2690 3.107642 ACGTAGTTGAGTGGGTCTTTG 57.892 47.619 0.00 0.00 37.78 2.77
2494 2792 4.786425 AGAAAATCTTGAGATGTAGGCCC 58.214 43.478 0.00 0.00 34.49 5.80
2495 2793 4.228210 AGAAAATCTTGAGATGTAGGCCCA 59.772 41.667 0.00 0.00 34.49 5.36
2496 2794 4.803329 AAATCTTGAGATGTAGGCCCAT 57.197 40.909 0.00 0.00 34.49 4.00
2497 2795 4.803329 AATCTTGAGATGTAGGCCCATT 57.197 40.909 0.00 0.00 34.49 3.16
2498 2796 4.803329 ATCTTGAGATGTAGGCCCATTT 57.197 40.909 0.00 0.00 32.68 2.32
2499 2797 4.591321 TCTTGAGATGTAGGCCCATTTT 57.409 40.909 0.00 0.00 0.00 1.82
2500 2798 4.934356 TCTTGAGATGTAGGCCCATTTTT 58.066 39.130 0.00 0.00 0.00 1.94
2575 2873 2.036733 ACGTCTTGACCGGAGAAAATCA 59.963 45.455 9.46 0.00 0.00 2.57
2586 2884 7.175816 TGACCGGAGAAAATCACATCAAAATAA 59.824 33.333 9.46 0.00 0.00 1.40
2606 2904 0.248458 CCACCTGCGTGTGAAAACAC 60.248 55.000 6.97 0.00 38.55 3.32
2618 2916 0.924777 GAAAACACCGGCCGTTTTTG 59.075 50.000 26.96 17.18 44.42 2.44
2621 2919 1.313812 AACACCGGCCGTTTTTGTCA 61.314 50.000 26.12 0.00 0.00 3.58
2624 2922 0.820074 ACCGGCCGTTTTTGTCATCA 60.820 50.000 26.12 0.00 0.00 3.07
2629 2927 3.064682 CGGCCGTTTTTGTCATCATCATA 59.935 43.478 19.50 0.00 0.00 2.15
2632 2930 5.295787 GGCCGTTTTTGTCATCATCATAGTA 59.704 40.000 0.00 0.00 0.00 1.82
2633 2931 6.422223 GCCGTTTTTGTCATCATCATAGTAG 58.578 40.000 0.00 0.00 0.00 2.57
2634 2932 6.037172 GCCGTTTTTGTCATCATCATAGTAGT 59.963 38.462 0.00 0.00 0.00 2.73
2635 2933 7.621991 CCGTTTTTGTCATCATCATAGTAGTC 58.378 38.462 0.00 0.00 0.00 2.59
2636 2934 7.492669 CCGTTTTTGTCATCATCATAGTAGTCT 59.507 37.037 0.00 0.00 0.00 3.24
2637 2935 8.323854 CGTTTTTGTCATCATCATAGTAGTCTG 58.676 37.037 0.00 0.00 0.00 3.51
2638 2936 9.371136 GTTTTTGTCATCATCATAGTAGTCTGA 57.629 33.333 0.00 0.00 0.00 3.27
2639 2937 9.591792 TTTTTGTCATCATCATAGTAGTCTGAG 57.408 33.333 0.00 0.00 0.00 3.35
2649 2947 7.663043 TCATAGTAGTCTGAGACTCTGAGTA 57.337 40.000 19.83 18.16 42.40 2.59
2696 2994 2.050077 GCCGTTGAAGCAAGCACC 60.050 61.111 0.00 0.00 0.00 5.01
2697 2995 2.844451 GCCGTTGAAGCAAGCACCA 61.844 57.895 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.552355 ACGTTCAACTCGATCAACATACA 58.448 39.130 0.00 0.00 0.00 2.29
2 3 6.291637 CCATACGTTCAACTCGATCAACATAC 60.292 42.308 0.00 0.00 0.00 2.39
4 5 4.566759 CCATACGTTCAACTCGATCAACAT 59.433 41.667 0.00 0.00 0.00 2.71
5 6 3.924073 CCATACGTTCAACTCGATCAACA 59.076 43.478 0.00 0.00 0.00 3.33
6 7 3.306166 CCCATACGTTCAACTCGATCAAC 59.694 47.826 0.00 0.00 0.00 3.18
7 8 3.517602 CCCATACGTTCAACTCGATCAA 58.482 45.455 0.00 0.00 0.00 2.57
8 9 2.159156 CCCCATACGTTCAACTCGATCA 60.159 50.000 0.00 0.00 0.00 2.92
9 10 2.470821 CCCCATACGTTCAACTCGATC 58.529 52.381 0.00 0.00 0.00 3.69
10 11 1.472728 GCCCCATACGTTCAACTCGAT 60.473 52.381 0.00 0.00 0.00 3.59
11 12 0.108520 GCCCCATACGTTCAACTCGA 60.109 55.000 0.00 0.00 0.00 4.04
12 13 0.390603 TGCCCCATACGTTCAACTCG 60.391 55.000 0.00 0.00 0.00 4.18
13 14 1.084289 GTGCCCCATACGTTCAACTC 58.916 55.000 0.00 0.00 0.00 3.01
14 15 0.690762 AGTGCCCCATACGTTCAACT 59.309 50.000 0.00 0.00 0.00 3.16
15 16 2.277084 CTAGTGCCCCATACGTTCAAC 58.723 52.381 0.00 0.00 0.00 3.18
16 17 1.406341 GCTAGTGCCCCATACGTTCAA 60.406 52.381 0.00 0.00 0.00 2.69
17 18 0.177141 GCTAGTGCCCCATACGTTCA 59.823 55.000 0.00 0.00 0.00 3.18
18 19 2.987752 GCTAGTGCCCCATACGTTC 58.012 57.895 0.00 0.00 0.00 3.95
29 30 4.874977 GGAGACGGCGGCTAGTGC 62.875 72.222 18.91 1.87 38.76 4.40
30 31 3.127352 GAGGAGACGGCGGCTAGTG 62.127 68.421 18.91 0.00 0.00 2.74
31 32 2.829458 GAGGAGACGGCGGCTAGT 60.829 66.667 18.91 5.35 0.00 2.57
32 33 3.597728 GGAGGAGACGGCGGCTAG 61.598 72.222 18.91 0.00 0.00 3.42
33 34 4.124943 AGGAGGAGACGGCGGCTA 62.125 66.667 18.91 0.00 0.00 3.93
36 37 4.824515 AGGAGGAGGAGACGGCGG 62.825 72.222 13.24 0.00 0.00 6.13
37 38 3.213402 GAGGAGGAGGAGACGGCG 61.213 72.222 4.80 4.80 0.00 6.46
38 39 2.835895 GGAGGAGGAGGAGACGGC 60.836 72.222 0.00 0.00 0.00 5.68
39 40 0.614979 TTTGGAGGAGGAGGAGACGG 60.615 60.000 0.00 0.00 0.00 4.79
40 41 1.267121 TTTTGGAGGAGGAGGAGACG 58.733 55.000 0.00 0.00 0.00 4.18
57 58 2.628178 GAGGCACAAACCCTAGCTTTTT 59.372 45.455 0.00 0.00 31.41 1.94
58 59 2.158460 AGAGGCACAAACCCTAGCTTTT 60.158 45.455 0.00 0.00 31.41 2.27
59 60 1.425448 AGAGGCACAAACCCTAGCTTT 59.575 47.619 0.00 0.00 31.41 3.51
60 61 1.003696 GAGAGGCACAAACCCTAGCTT 59.996 52.381 0.00 0.00 31.41 3.74
61 62 0.615850 GAGAGGCACAAACCCTAGCT 59.384 55.000 0.00 0.00 31.41 3.32
62 63 0.741221 CGAGAGGCACAAACCCTAGC 60.741 60.000 0.00 0.00 31.41 3.42
63 64 0.741221 GCGAGAGGCACAAACCCTAG 60.741 60.000 0.00 0.00 42.87 3.02
64 65 1.295423 GCGAGAGGCACAAACCCTA 59.705 57.895 0.00 0.00 42.87 3.53
65 66 2.032681 GCGAGAGGCACAAACCCT 59.967 61.111 0.00 0.00 42.87 4.34
102 103 4.452733 GGGCCACCGAAGACGAGG 62.453 72.222 4.39 0.00 42.66 4.63
103 104 2.005960 CTAGGGCCACCGAAGACGAG 62.006 65.000 6.18 0.00 43.47 4.18
104 105 2.036098 TAGGGCCACCGAAGACGA 59.964 61.111 6.18 0.00 43.47 4.20
105 106 2.494918 CTAGGGCCACCGAAGACG 59.505 66.667 6.18 0.00 43.47 4.18
106 107 2.732619 CCCTAGGGCCACCGAAGAC 61.733 68.421 16.90 0.00 43.47 3.01
107 108 2.365105 CCCTAGGGCCACCGAAGA 60.365 66.667 16.90 0.00 43.47 2.87
125 126 4.511246 ATCCACTGCGCCCCATGG 62.511 66.667 4.18 4.14 0.00 3.66
126 127 2.903855 GATCCACTGCGCCCCATG 60.904 66.667 4.18 0.00 0.00 3.66
127 128 4.195334 GGATCCACTGCGCCCCAT 62.195 66.667 6.95 0.00 0.00 4.00
129 130 4.864334 CAGGATCCACTGCGCCCC 62.864 72.222 15.82 0.00 0.00 5.80
130 131 4.864334 CCAGGATCCACTGCGCCC 62.864 72.222 15.82 0.00 37.16 6.13
132 133 4.783621 TGCCAGGATCCACTGCGC 62.784 66.667 15.82 0.00 37.16 6.09
133 134 2.046023 TTGCCAGGATCCACTGCG 60.046 61.111 15.82 0.20 37.16 5.18
134 135 1.751927 CCTTGCCAGGATCCACTGC 60.752 63.158 15.82 13.51 44.19 4.40
135 136 1.077212 CCCTTGCCAGGATCCACTG 60.077 63.158 15.82 4.05 44.19 3.66
136 137 2.988839 GCCCTTGCCAGGATCCACT 61.989 63.158 15.82 0.00 44.19 4.00
137 138 2.440980 GCCCTTGCCAGGATCCAC 60.441 66.667 15.82 3.31 44.19 4.02
159 160 0.958876 CAACTAACAACGGAGCCCCC 60.959 60.000 0.00 0.00 0.00 5.40
160 161 0.250597 ACAACTAACAACGGAGCCCC 60.251 55.000 0.00 0.00 0.00 5.80
161 162 1.601166 AACAACTAACAACGGAGCCC 58.399 50.000 0.00 0.00 0.00 5.19
162 163 2.876550 AGAAACAACTAACAACGGAGCC 59.123 45.455 0.00 0.00 0.00 4.70
163 164 4.547406 AAGAAACAACTAACAACGGAGC 57.453 40.909 0.00 0.00 0.00 4.70
164 165 6.114221 TCAAAGAAACAACTAACAACGGAG 57.886 37.500 0.00 0.00 0.00 4.63
165 166 5.644636 ACTCAAAGAAACAACTAACAACGGA 59.355 36.000 0.00 0.00 0.00 4.69
166 167 5.875930 ACTCAAAGAAACAACTAACAACGG 58.124 37.500 0.00 0.00 0.00 4.44
167 168 7.790861 AAACTCAAAGAAACAACTAACAACG 57.209 32.000 0.00 0.00 0.00 4.10
168 169 8.974408 ACAAAACTCAAAGAAACAACTAACAAC 58.026 29.630 0.00 0.00 0.00 3.32
169 170 9.535878 AACAAAACTCAAAGAAACAACTAACAA 57.464 25.926 0.00 0.00 0.00 2.83
172 173 9.849166 CCTAACAAAACTCAAAGAAACAACTAA 57.151 29.630 0.00 0.00 0.00 2.24
173 174 8.463607 CCCTAACAAAACTCAAAGAAACAACTA 58.536 33.333 0.00 0.00 0.00 2.24
174 175 7.039293 ACCCTAACAAAACTCAAAGAAACAACT 60.039 33.333 0.00 0.00 0.00 3.16
175 176 7.094631 ACCCTAACAAAACTCAAAGAAACAAC 58.905 34.615 0.00 0.00 0.00 3.32
176 177 7.234661 ACCCTAACAAAACTCAAAGAAACAA 57.765 32.000 0.00 0.00 0.00 2.83
177 178 6.844097 ACCCTAACAAAACTCAAAGAAACA 57.156 33.333 0.00 0.00 0.00 2.83
178 179 7.601130 ACAAACCCTAACAAAACTCAAAGAAAC 59.399 33.333 0.00 0.00 0.00 2.78
179 180 7.600752 CACAAACCCTAACAAAACTCAAAGAAA 59.399 33.333 0.00 0.00 0.00 2.52
180 181 7.093992 CACAAACCCTAACAAAACTCAAAGAA 58.906 34.615 0.00 0.00 0.00 2.52
181 182 6.209788 ACACAAACCCTAACAAAACTCAAAGA 59.790 34.615 0.00 0.00 0.00 2.52
182 183 6.394809 ACACAAACCCTAACAAAACTCAAAG 58.605 36.000 0.00 0.00 0.00 2.77
183 184 6.347859 ACACAAACCCTAACAAAACTCAAA 57.652 33.333 0.00 0.00 0.00 2.69
184 185 5.105675 GGACACAAACCCTAACAAAACTCAA 60.106 40.000 0.00 0.00 0.00 3.02
185 186 4.399934 GGACACAAACCCTAACAAAACTCA 59.600 41.667 0.00 0.00 0.00 3.41
186 187 4.643334 AGGACACAAACCCTAACAAAACTC 59.357 41.667 0.00 0.00 0.00 3.01
187 188 4.606210 AGGACACAAACCCTAACAAAACT 58.394 39.130 0.00 0.00 0.00 2.66
188 189 4.994907 AGGACACAAACCCTAACAAAAC 57.005 40.909 0.00 0.00 0.00 2.43
189 190 5.757988 AGTAGGACACAAACCCTAACAAAA 58.242 37.500 0.00 0.00 36.84 2.44
190 191 5.104444 TGAGTAGGACACAAACCCTAACAAA 60.104 40.000 0.00 0.00 36.84 2.83
191 192 4.409574 TGAGTAGGACACAAACCCTAACAA 59.590 41.667 0.00 0.00 36.84 2.83
192 193 3.968649 TGAGTAGGACACAAACCCTAACA 59.031 43.478 0.00 0.00 36.84 2.41
193 194 4.566987 CTGAGTAGGACACAAACCCTAAC 58.433 47.826 0.00 0.00 36.84 2.34
194 195 4.884668 CTGAGTAGGACACAAACCCTAA 57.115 45.455 0.00 0.00 36.84 2.69
207 208 2.096174 CGTCTCGTCTTTCCTGAGTAGG 59.904 54.545 0.00 0.00 46.06 3.18
208 209 2.096174 CCGTCTCGTCTTTCCTGAGTAG 59.904 54.545 0.00 0.00 0.00 2.57
209 210 2.082231 CCGTCTCGTCTTTCCTGAGTA 58.918 52.381 0.00 0.00 0.00 2.59
210 211 0.882474 CCGTCTCGTCTTTCCTGAGT 59.118 55.000 0.00 0.00 0.00 3.41
211 212 0.456995 GCCGTCTCGTCTTTCCTGAG 60.457 60.000 0.00 0.00 0.00 3.35
212 213 1.585006 GCCGTCTCGTCTTTCCTGA 59.415 57.895 0.00 0.00 0.00 3.86
213 214 1.801913 CGCCGTCTCGTCTTTCCTG 60.802 63.158 0.00 0.00 0.00 3.86
214 215 2.567049 CGCCGTCTCGTCTTTCCT 59.433 61.111 0.00 0.00 0.00 3.36
215 216 2.506438 CCGCCGTCTCGTCTTTCC 60.506 66.667 0.00 0.00 0.00 3.13
216 217 3.179939 GCCGCCGTCTCGTCTTTC 61.180 66.667 0.00 0.00 0.00 2.62
233 234 3.854669 ATCTTCAGGGAGCCGCCG 61.855 66.667 0.00 0.00 37.63 6.46
234 235 2.203126 CATCTTCAGGGAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
235 236 2.203126 CCATCTTCAGGGAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
236 237 0.471617 ATTCCATCTTCAGGGAGCCG 59.528 55.000 0.00 0.00 34.02 5.52
237 238 3.864789 TTATTCCATCTTCAGGGAGCC 57.135 47.619 0.00 0.00 34.02 4.70
238 239 4.140536 CCTTTATTCCATCTTCAGGGAGC 58.859 47.826 0.00 0.00 34.02 4.70
239 240 5.131809 AGACCTTTATTCCATCTTCAGGGAG 59.868 44.000 0.00 0.00 34.02 4.30
240 241 5.039645 AGACCTTTATTCCATCTTCAGGGA 58.960 41.667 0.00 0.00 0.00 4.20
241 242 5.131809 AGAGACCTTTATTCCATCTTCAGGG 59.868 44.000 0.00 0.00 0.00 4.45
242 243 6.245890 AGAGACCTTTATTCCATCTTCAGG 57.754 41.667 0.00 0.00 0.00 3.86
243 244 9.487790 GAATAGAGACCTTTATTCCATCTTCAG 57.512 37.037 8.36 0.00 32.60 3.02
244 245 8.144478 CGAATAGAGACCTTTATTCCATCTTCA 58.856 37.037 12.06 0.00 34.35 3.02
245 246 7.600752 CCGAATAGAGACCTTTATTCCATCTTC 59.399 40.741 12.06 0.00 34.35 2.87
246 247 7.071321 ACCGAATAGAGACCTTTATTCCATCTT 59.929 37.037 12.06 0.00 34.35 2.40
247 248 6.555360 ACCGAATAGAGACCTTTATTCCATCT 59.445 38.462 12.06 0.00 34.35 2.90
248 249 6.647067 CACCGAATAGAGACCTTTATTCCATC 59.353 42.308 12.06 0.00 34.35 3.51
249 250 6.525629 CACCGAATAGAGACCTTTATTCCAT 58.474 40.000 12.06 2.06 34.35 3.41
250 251 5.684030 GCACCGAATAGAGACCTTTATTCCA 60.684 44.000 12.06 0.00 34.35 3.53
251 252 4.750598 GCACCGAATAGAGACCTTTATTCC 59.249 45.833 12.06 0.00 34.35 3.01
252 253 4.444720 CGCACCGAATAGAGACCTTTATTC 59.555 45.833 9.15 9.15 34.46 1.75
253 254 4.098960 TCGCACCGAATAGAGACCTTTATT 59.901 41.667 0.00 0.00 31.06 1.40
254 255 3.635373 TCGCACCGAATAGAGACCTTTAT 59.365 43.478 0.00 0.00 31.06 1.40
255 256 3.018856 TCGCACCGAATAGAGACCTTTA 58.981 45.455 0.00 0.00 31.06 1.85
256 257 1.822990 TCGCACCGAATAGAGACCTTT 59.177 47.619 0.00 0.00 31.06 3.11
257 258 1.405821 CTCGCACCGAATAGAGACCTT 59.594 52.381 0.00 0.00 34.74 3.50
258 259 1.025812 CTCGCACCGAATAGAGACCT 58.974 55.000 0.00 0.00 34.74 3.85
259 260 0.030908 CCTCGCACCGAATAGAGACC 59.969 60.000 0.00 0.00 34.74 3.85
260 261 1.002251 CTCCTCGCACCGAATAGAGAC 60.002 57.143 0.00 0.00 34.74 3.36
261 262 1.309950 CTCCTCGCACCGAATAGAGA 58.690 55.000 0.00 0.00 34.74 3.10
262 263 1.025812 ACTCCTCGCACCGAATAGAG 58.974 55.000 7.17 7.17 34.74 2.43
263 264 0.738975 CACTCCTCGCACCGAATAGA 59.261 55.000 0.00 0.00 34.74 1.98
264 265 0.249073 CCACTCCTCGCACCGAATAG 60.249 60.000 0.00 0.00 34.74 1.73
265 266 0.681887 TCCACTCCTCGCACCGAATA 60.682 55.000 0.00 0.00 34.74 1.75
266 267 1.330655 ATCCACTCCTCGCACCGAAT 61.331 55.000 0.00 0.00 34.74 3.34
267 268 0.681887 TATCCACTCCTCGCACCGAA 60.682 55.000 0.00 0.00 34.74 4.30
268 269 0.681887 TTATCCACTCCTCGCACCGA 60.682 55.000 0.00 0.00 0.00 4.69
269 270 0.389391 ATTATCCACTCCTCGCACCG 59.611 55.000 0.00 0.00 0.00 4.94
285 286 9.448438 CATCCCCGAACATTTCTCATATTATTA 57.552 33.333 0.00 0.00 0.00 0.98
293 294 1.004161 TGCATCCCCGAACATTTCTCA 59.996 47.619 0.00 0.00 0.00 3.27
294 295 1.672881 CTGCATCCCCGAACATTTCTC 59.327 52.381 0.00 0.00 0.00 2.87
303 304 2.220586 TTCACACCTGCATCCCCGA 61.221 57.895 0.00 0.00 0.00 5.14
347 348 2.043980 CCCATGCCCGCGTTTAGTT 61.044 57.895 4.92 0.00 0.00 2.24
348 349 2.437716 CCCATGCCCGCGTTTAGT 60.438 61.111 4.92 0.00 0.00 2.24
349 350 3.887868 GCCCATGCCCGCGTTTAG 61.888 66.667 4.92 0.00 0.00 1.85
350 351 4.724501 TGCCCATGCCCGCGTTTA 62.725 61.111 4.92 0.00 36.33 2.01
366 367 4.050934 GTTTTTCGGGCCGGGCTG 62.051 66.667 30.31 30.31 0.00 4.85
405 406 4.760047 CCCGGGCCGAGTGTCAAG 62.760 72.222 30.79 7.64 0.00 3.02
420 421 3.959991 GAGTGTCAAGCCCGAGCCC 62.960 68.421 0.00 0.00 41.25 5.19
421 422 2.435059 GAGTGTCAAGCCCGAGCC 60.435 66.667 0.00 0.00 41.25 4.70
422 423 2.811317 CGAGTGTCAAGCCCGAGC 60.811 66.667 0.00 0.00 40.32 5.03
423 424 2.125912 CCGAGTGTCAAGCCCGAG 60.126 66.667 0.00 0.00 0.00 4.63
424 425 4.373116 GCCGAGTGTCAAGCCCGA 62.373 66.667 0.00 0.00 0.00 5.14
429 430 4.760047 CCCGGGCCGAGTGTCAAG 62.760 72.222 30.79 7.64 0.00 3.02
443 444 2.561037 AAAACAAAGCCCGAGCCCG 61.561 57.895 0.00 0.00 41.25 6.13
444 445 1.006220 CAAAACAAAGCCCGAGCCC 60.006 57.895 0.00 0.00 41.25 5.19
445 446 1.664649 GCAAAACAAAGCCCGAGCC 60.665 57.895 0.00 0.00 41.25 4.70
446 447 0.940991 CTGCAAAACAAAGCCCGAGC 60.941 55.000 0.00 0.00 40.32 5.03
447 448 0.940991 GCTGCAAAACAAAGCCCGAG 60.941 55.000 0.00 0.00 0.00 4.63
448 449 1.067250 GCTGCAAAACAAAGCCCGA 59.933 52.632 0.00 0.00 0.00 5.14
449 450 2.302230 CGCTGCAAAACAAAGCCCG 61.302 57.895 0.00 0.00 33.24 6.13
450 451 2.597713 GCGCTGCAAAACAAAGCCC 61.598 57.895 0.00 0.00 33.24 5.19
451 452 2.930628 GCGCTGCAAAACAAAGCC 59.069 55.556 0.00 0.00 33.24 4.35
452 453 1.869242 CTCGCGCTGCAAAACAAAGC 61.869 55.000 5.56 0.00 0.00 3.51
453 454 0.316937 TCTCGCGCTGCAAAACAAAG 60.317 50.000 5.56 0.00 0.00 2.77
454 455 0.099613 TTCTCGCGCTGCAAAACAAA 59.900 45.000 5.56 0.00 0.00 2.83
455 456 0.316937 CTTCTCGCGCTGCAAAACAA 60.317 50.000 5.56 0.00 0.00 2.83
456 457 1.279539 CTTCTCGCGCTGCAAAACA 59.720 52.632 5.56 0.00 0.00 2.83
457 458 0.511221 TACTTCTCGCGCTGCAAAAC 59.489 50.000 5.56 0.00 0.00 2.43
458 459 0.790207 CTACTTCTCGCGCTGCAAAA 59.210 50.000 5.56 0.00 0.00 2.44
459 460 0.319555 ACTACTTCTCGCGCTGCAAA 60.320 50.000 5.56 0.00 0.00 3.68
460 461 0.319555 AACTACTTCTCGCGCTGCAA 60.320 50.000 5.56 0.00 0.00 4.08
461 462 0.732880 GAACTACTTCTCGCGCTGCA 60.733 55.000 5.56 0.00 0.00 4.41
462 463 1.734359 CGAACTACTTCTCGCGCTGC 61.734 60.000 5.56 0.00 0.00 5.25
463 464 1.134530 CCGAACTACTTCTCGCGCTG 61.135 60.000 5.56 0.00 33.70 5.18
464 465 1.136984 CCGAACTACTTCTCGCGCT 59.863 57.895 5.56 0.00 33.70 5.92
465 466 1.872679 CCCGAACTACTTCTCGCGC 60.873 63.158 0.00 0.00 33.70 6.86
466 467 1.872679 GCCCGAACTACTTCTCGCG 60.873 63.158 0.00 0.00 33.70 5.87
467 468 1.518792 GGCCCGAACTACTTCTCGC 60.519 63.158 0.00 0.00 33.70 5.03
468 469 1.226603 CGGCCCGAACTACTTCTCG 60.227 63.158 0.00 0.00 34.83 4.04
469 470 1.141234 CCGGCCCGAACTACTTCTC 59.859 63.158 3.71 0.00 0.00 2.87
470 471 2.356780 CCCGGCCCGAACTACTTCT 61.357 63.158 3.71 0.00 0.00 2.85
471 472 2.186125 CCCGGCCCGAACTACTTC 59.814 66.667 3.71 0.00 0.00 3.01
472 473 4.091939 GCCCGGCCCGAACTACTT 62.092 66.667 3.71 0.00 0.00 2.24
474 475 4.525949 GAGCCCGGCCCGAACTAC 62.526 72.222 3.71 0.00 0.00 2.73
485 486 2.804828 AAAAGAGAAGCCCGAGCCCG 62.805 60.000 0.00 0.00 41.25 6.13
486 487 0.609406 AAAAAGAGAAGCCCGAGCCC 60.609 55.000 0.00 0.00 41.25 5.19
487 488 0.805614 GAAAAAGAGAAGCCCGAGCC 59.194 55.000 0.00 0.00 41.25 4.70
488 489 1.814793 AGAAAAAGAGAAGCCCGAGC 58.185 50.000 0.00 0.00 40.32 5.03
489 490 6.502136 AAAATAGAAAAAGAGAAGCCCGAG 57.498 37.500 0.00 0.00 0.00 4.63
490 491 6.348213 CGAAAAATAGAAAAAGAGAAGCCCGA 60.348 38.462 0.00 0.00 0.00 5.14
491 492 5.795441 CGAAAAATAGAAAAAGAGAAGCCCG 59.205 40.000 0.00 0.00 0.00 6.13
492 493 6.093404 CCGAAAAATAGAAAAAGAGAAGCCC 58.907 40.000 0.00 0.00 0.00 5.19
493 494 6.093404 CCCGAAAAATAGAAAAAGAGAAGCC 58.907 40.000 0.00 0.00 0.00 4.35
494 495 5.573282 GCCCGAAAAATAGAAAAAGAGAAGC 59.427 40.000 0.00 0.00 0.00 3.86
495 496 6.071896 AGGCCCGAAAAATAGAAAAAGAGAAG 60.072 38.462 0.00 0.00 0.00 2.85
496 497 5.773176 AGGCCCGAAAAATAGAAAAAGAGAA 59.227 36.000 0.00 0.00 0.00 2.87
497 498 5.321927 AGGCCCGAAAAATAGAAAAAGAGA 58.678 37.500 0.00 0.00 0.00 3.10
498 499 5.644977 AGGCCCGAAAAATAGAAAAAGAG 57.355 39.130 0.00 0.00 0.00 2.85
499 500 5.778862 CAAGGCCCGAAAAATAGAAAAAGA 58.221 37.500 0.00 0.00 0.00 2.52
500 501 4.388773 GCAAGGCCCGAAAAATAGAAAAAG 59.611 41.667 0.00 0.00 0.00 2.27
501 502 4.039852 AGCAAGGCCCGAAAAATAGAAAAA 59.960 37.500 0.00 0.00 0.00 1.94
502 503 3.576550 AGCAAGGCCCGAAAAATAGAAAA 59.423 39.130 0.00 0.00 0.00 2.29
503 504 3.161866 AGCAAGGCCCGAAAAATAGAAA 58.838 40.909 0.00 0.00 0.00 2.52
504 505 2.802719 AGCAAGGCCCGAAAAATAGAA 58.197 42.857 0.00 0.00 0.00 2.10
505 506 2.507407 AGCAAGGCCCGAAAAATAGA 57.493 45.000 0.00 0.00 0.00 1.98
506 507 3.511699 GAAAGCAAGGCCCGAAAAATAG 58.488 45.455 0.00 0.00 0.00 1.73
507 508 2.094957 CGAAAGCAAGGCCCGAAAAATA 60.095 45.455 0.00 0.00 0.00 1.40
508 509 1.336795 CGAAAGCAAGGCCCGAAAAAT 60.337 47.619 0.00 0.00 0.00 1.82
509 510 0.031449 CGAAAGCAAGGCCCGAAAAA 59.969 50.000 0.00 0.00 0.00 1.94
510 511 1.657556 CGAAAGCAAGGCCCGAAAA 59.342 52.632 0.00 0.00 0.00 2.29
511 512 2.265182 CCGAAAGCAAGGCCCGAAA 61.265 57.895 0.00 0.00 0.00 3.46
512 513 2.671619 CCGAAAGCAAGGCCCGAA 60.672 61.111 0.00 0.00 0.00 4.30
513 514 4.715523 CCCGAAAGCAAGGCCCGA 62.716 66.667 0.00 0.00 0.00 5.14
518 519 2.690778 CCGAAGCCCGAAAGCAAGG 61.691 63.158 0.00 0.00 41.76 3.61
519 520 2.690778 CCCGAAGCCCGAAAGCAAG 61.691 63.158 0.00 0.00 41.76 4.01
520 521 2.671619 CCCGAAGCCCGAAAGCAA 60.672 61.111 0.00 0.00 41.76 3.91
538 539 3.419759 GTGTACGTGCAAGCCCGG 61.420 66.667 8.25 0.00 0.00 5.73
539 540 3.773630 CGTGTACGTGCAAGCCCG 61.774 66.667 8.25 3.77 34.11 6.13
563 564 2.330041 CGCCCGAACGCTGTTTTT 59.670 55.556 0.00 0.00 0.00 1.94
564 565 3.656045 CCGCCCGAACGCTGTTTT 61.656 61.111 0.00 0.00 0.00 2.43
584 585 2.359975 AAGCCCGAAGCCCGAAAG 60.360 61.111 0.00 0.00 45.47 2.62
585 586 2.478335 ATCAAGCCCGAAGCCCGAAA 62.478 55.000 0.00 0.00 45.47 3.46
586 587 2.478335 AATCAAGCCCGAAGCCCGAA 62.478 55.000 0.00 0.00 45.47 4.30
587 588 2.478335 AAATCAAGCCCGAAGCCCGA 62.478 55.000 0.00 0.00 45.47 5.14
588 589 1.993369 GAAATCAAGCCCGAAGCCCG 61.993 60.000 0.00 0.00 45.47 6.13
589 590 1.809869 GAAATCAAGCCCGAAGCCC 59.190 57.895 0.00 0.00 45.47 5.19
590 591 1.429423 CGAAATCAAGCCCGAAGCC 59.571 57.895 0.00 0.00 45.47 4.35
591 592 1.429423 CCGAAATCAAGCCCGAAGC 59.571 57.895 0.00 0.00 44.25 3.86
592 593 0.676782 ACCCGAAATCAAGCCCGAAG 60.677 55.000 0.00 0.00 0.00 3.79
593 594 0.675522 GACCCGAAATCAAGCCCGAA 60.676 55.000 0.00 0.00 0.00 4.30
594 595 1.078708 GACCCGAAATCAAGCCCGA 60.079 57.895 0.00 0.00 0.00 5.14
595 596 2.461110 CGACCCGAAATCAAGCCCG 61.461 63.158 0.00 0.00 0.00 6.13
596 597 2.112815 CCGACCCGAAATCAAGCCC 61.113 63.158 0.00 0.00 0.00 5.19
597 598 2.112815 CCCGACCCGAAATCAAGCC 61.113 63.158 0.00 0.00 0.00 4.35
598 599 2.761195 GCCCGACCCGAAATCAAGC 61.761 63.158 0.00 0.00 0.00 4.01
599 600 1.078426 AGCCCGACCCGAAATCAAG 60.078 57.895 0.00 0.00 0.00 3.02
600 601 1.078708 GAGCCCGACCCGAAATCAA 60.079 57.895 0.00 0.00 0.00 2.57
601 602 2.238847 CTGAGCCCGACCCGAAATCA 62.239 60.000 0.00 0.00 0.00 2.57
602 603 1.521681 CTGAGCCCGACCCGAAATC 60.522 63.158 0.00 0.00 0.00 2.17
603 604 2.584608 CTGAGCCCGACCCGAAAT 59.415 61.111 0.00 0.00 0.00 2.17
604 605 3.702048 CCTGAGCCCGACCCGAAA 61.702 66.667 0.00 0.00 0.00 3.46
608 609 4.785453 CAAGCCTGAGCCCGACCC 62.785 72.222 0.00 0.00 41.25 4.46
609 610 2.543067 AATCAAGCCTGAGCCCGACC 62.543 60.000 0.00 0.00 41.25 4.79
610 611 0.678048 AAATCAAGCCTGAGCCCGAC 60.678 55.000 0.00 0.00 41.25 4.79
611 612 0.392998 GAAATCAAGCCTGAGCCCGA 60.393 55.000 0.00 0.00 41.25 5.14
612 613 0.677731 TGAAATCAAGCCTGAGCCCG 60.678 55.000 0.00 0.00 41.25 6.13
613 614 1.101331 CTGAAATCAAGCCTGAGCCC 58.899 55.000 0.00 0.00 41.25 5.19
614 615 1.101331 CCTGAAATCAAGCCTGAGCC 58.899 55.000 0.00 0.00 41.25 4.70
615 616 1.101331 CCCTGAAATCAAGCCTGAGC 58.899 55.000 0.00 0.00 34.23 4.26
616 617 2.026449 ACTCCCTGAAATCAAGCCTGAG 60.026 50.000 0.00 0.00 34.23 3.35
617 618 1.988107 ACTCCCTGAAATCAAGCCTGA 59.012 47.619 0.00 0.00 35.56 3.86
618 619 2.503895 ACTCCCTGAAATCAAGCCTG 57.496 50.000 0.00 0.00 0.00 4.85
619 620 4.870021 AATACTCCCTGAAATCAAGCCT 57.130 40.909 0.00 0.00 0.00 4.58
620 621 4.035675 CGAAATACTCCCTGAAATCAAGCC 59.964 45.833 0.00 0.00 0.00 4.35
621 622 4.035675 CCGAAATACTCCCTGAAATCAAGC 59.964 45.833 0.00 0.00 0.00 4.01
622 623 4.576463 CCCGAAATACTCCCTGAAATCAAG 59.424 45.833 0.00 0.00 0.00 3.02
623 624 4.523083 CCCGAAATACTCCCTGAAATCAA 58.477 43.478 0.00 0.00 0.00 2.57
624 625 3.684413 GCCCGAAATACTCCCTGAAATCA 60.684 47.826 0.00 0.00 0.00 2.57
625 626 2.879026 GCCCGAAATACTCCCTGAAATC 59.121 50.000 0.00 0.00 0.00 2.17
626 627 2.509964 AGCCCGAAATACTCCCTGAAAT 59.490 45.455 0.00 0.00 0.00 2.17
627 628 1.913419 AGCCCGAAATACTCCCTGAAA 59.087 47.619 0.00 0.00 0.00 2.69
628 629 1.580059 AGCCCGAAATACTCCCTGAA 58.420 50.000 0.00 0.00 0.00 3.02
629 630 1.485066 GAAGCCCGAAATACTCCCTGA 59.515 52.381 0.00 0.00 0.00 3.86
630 631 1.806623 CGAAGCCCGAAATACTCCCTG 60.807 57.143 0.00 0.00 41.76 4.45
631 632 0.464452 CGAAGCCCGAAATACTCCCT 59.536 55.000 0.00 0.00 41.76 4.20
632 633 0.532196 CCGAAGCCCGAAATACTCCC 60.532 60.000 0.00 0.00 41.76 4.30
633 634 0.462789 TCCGAAGCCCGAAATACTCC 59.537 55.000 0.00 0.00 41.76 3.85
634 635 1.136500 AGTCCGAAGCCCGAAATACTC 59.864 52.381 0.00 0.00 41.76 2.59
635 636 1.134788 CAGTCCGAAGCCCGAAATACT 60.135 52.381 0.00 0.00 41.76 2.12
636 637 1.287425 CAGTCCGAAGCCCGAAATAC 58.713 55.000 0.00 0.00 41.76 1.89
637 638 0.177141 CCAGTCCGAAGCCCGAAATA 59.823 55.000 0.00 0.00 41.76 1.40
638 639 1.078426 CCAGTCCGAAGCCCGAAAT 60.078 57.895 0.00 0.00 41.76 2.17
639 640 2.345991 CCAGTCCGAAGCCCGAAA 59.654 61.111 0.00 0.00 41.76 3.46
640 641 3.702048 CCCAGTCCGAAGCCCGAA 61.702 66.667 0.00 0.00 41.76 4.30
643 644 4.475135 GAGCCCAGTCCGAAGCCC 62.475 72.222 0.00 0.00 0.00 5.19
644 645 4.821589 CGAGCCCAGTCCGAAGCC 62.822 72.222 0.00 0.00 0.00 4.35
645 646 4.821589 CCGAGCCCAGTCCGAAGC 62.822 72.222 0.00 0.00 0.00 3.86
646 647 4.148825 CCCGAGCCCAGTCCGAAG 62.149 72.222 0.00 0.00 0.00 3.79
650 651 4.785453 CAAGCCCGAGCCCAGTCC 62.785 72.222 0.00 0.00 41.25 3.85
651 652 3.672295 CTCAAGCCCGAGCCCAGTC 62.672 68.421 0.00 0.00 41.25 3.51
652 653 3.710722 CTCAAGCCCGAGCCCAGT 61.711 66.667 0.00 0.00 41.25 4.00
653 654 2.469465 TTTCTCAAGCCCGAGCCCAG 62.469 60.000 0.00 0.00 41.25 4.45
654 655 1.852157 ATTTCTCAAGCCCGAGCCCA 61.852 55.000 0.00 0.00 41.25 5.36
655 656 1.077429 ATTTCTCAAGCCCGAGCCC 60.077 57.895 0.00 0.00 41.25 5.19
656 657 0.392998 TCATTTCTCAAGCCCGAGCC 60.393 55.000 0.00 0.00 41.25 4.70
657 658 1.399791 CTTCATTTCTCAAGCCCGAGC 59.600 52.381 0.00 0.00 40.32 5.03
658 659 2.012673 CCTTCATTTCTCAAGCCCGAG 58.987 52.381 0.00 0.00 0.00 4.63
659 660 1.351017 ACCTTCATTTCTCAAGCCCGA 59.649 47.619 0.00 0.00 0.00 5.14
660 661 1.740025 GACCTTCATTTCTCAAGCCCG 59.260 52.381 0.00 0.00 0.00 6.13
661 662 1.740025 CGACCTTCATTTCTCAAGCCC 59.260 52.381 0.00 0.00 0.00 5.19
662 663 1.740025 CCGACCTTCATTTCTCAAGCC 59.260 52.381 0.00 0.00 0.00 4.35
663 664 1.740025 CCCGACCTTCATTTCTCAAGC 59.260 52.381 0.00 0.00 0.00 4.01
664 665 1.740025 GCCCGACCTTCATTTCTCAAG 59.260 52.381 0.00 0.00 0.00 3.02
665 666 1.351017 AGCCCGACCTTCATTTCTCAA 59.649 47.619 0.00 0.00 0.00 3.02
666 667 0.984230 AGCCCGACCTTCATTTCTCA 59.016 50.000 0.00 0.00 0.00 3.27
667 668 2.115343 AAGCCCGACCTTCATTTCTC 57.885 50.000 0.00 0.00 0.00 2.87
668 669 2.586648 AAAGCCCGACCTTCATTTCT 57.413 45.000 0.00 0.00 0.00 2.52
669 670 3.504520 TGTAAAAGCCCGACCTTCATTTC 59.495 43.478 0.00 0.00 0.00 2.17
670 671 3.492337 TGTAAAAGCCCGACCTTCATTT 58.508 40.909 0.00 0.00 0.00 2.32
671 672 3.149005 TGTAAAAGCCCGACCTTCATT 57.851 42.857 0.00 0.00 0.00 2.57
672 673 2.871096 TGTAAAAGCCCGACCTTCAT 57.129 45.000 0.00 0.00 0.00 2.57
673 674 2.500229 CTTGTAAAAGCCCGACCTTCA 58.500 47.619 0.00 0.00 0.00 3.02
674 675 1.199327 GCTTGTAAAAGCCCGACCTTC 59.801 52.381 6.34 0.00 39.81 3.46
675 676 1.244816 GCTTGTAAAAGCCCGACCTT 58.755 50.000 6.34 0.00 39.81 3.50
676 677 2.942641 GCTTGTAAAAGCCCGACCT 58.057 52.632 6.34 0.00 39.81 3.85
683 684 2.571757 GGCCGGGCTTGTAAAAGC 59.428 61.111 22.87 9.32 44.76 3.51
684 685 2.696759 CGGGCCGGGCTTGTAAAAG 61.697 63.158 28.80 5.53 0.00 2.27
685 686 2.673687 CGGGCCGGGCTTGTAAAA 60.674 61.111 28.80 0.00 0.00 1.52
686 687 4.726304 CCGGGCCGGGCTTGTAAA 62.726 66.667 37.27 0.00 44.15 2.01
704 705 4.636435 ACCTGGGCAAACGTCGGG 62.636 66.667 0.00 0.00 0.00 5.14
705 706 0.885596 TAAACCTGGGCAAACGTCGG 60.886 55.000 0.00 0.00 0.00 4.79
706 707 0.515564 CTAAACCTGGGCAAACGTCG 59.484 55.000 0.00 0.00 0.00 5.12
707 708 1.534163 GACTAAACCTGGGCAAACGTC 59.466 52.381 0.00 0.00 0.00 4.34
708 709 1.142262 AGACTAAACCTGGGCAAACGT 59.858 47.619 0.00 0.00 0.00 3.99
709 710 1.535462 CAGACTAAACCTGGGCAAACG 59.465 52.381 0.00 0.00 0.00 3.60
710 711 2.858745 TCAGACTAAACCTGGGCAAAC 58.141 47.619 0.00 0.00 32.73 2.93
711 712 3.219281 GTTCAGACTAAACCTGGGCAAA 58.781 45.455 0.00 0.00 32.73 3.68
719 720 2.501261 GTGGGTGGTTCAGACTAAACC 58.499 52.381 0.00 0.00 45.30 3.27
721 722 2.040939 TCGTGGGTGGTTCAGACTAAA 58.959 47.619 0.00 0.00 0.00 1.85
722 723 1.707106 TCGTGGGTGGTTCAGACTAA 58.293 50.000 0.00 0.00 0.00 2.24
724 725 0.608640 GATCGTGGGTGGTTCAGACT 59.391 55.000 0.00 0.00 0.00 3.24
728 729 1.933021 AGTAGATCGTGGGTGGTTCA 58.067 50.000 0.00 0.00 0.00 3.18
729 730 3.022406 AGTAGTAGATCGTGGGTGGTTC 58.978 50.000 0.00 0.00 0.00 3.62
755 756 4.498520 CTGCCCGATCGTGCGACT 62.499 66.667 17.61 0.00 0.00 4.18
810 815 1.893801 GGGAAGAAGAAGAGTCGTGGA 59.106 52.381 0.00 0.00 0.00 4.02
892 906 1.069978 TGTGAATGTGAAGGCAGACGA 59.930 47.619 0.00 0.00 0.00 4.20
982 997 2.507324 GGACGACGCTGGCTCTTC 60.507 66.667 0.00 0.00 0.00 2.87
1111 1127 1.541670 GCCGTGGTTGTTACTCTTGGA 60.542 52.381 0.00 0.00 0.00 3.53
1120 1136 2.515057 TTGCTCGCCGTGGTTGTT 60.515 55.556 0.00 0.00 0.00 2.83
1121 1137 2.933878 TTCTTGCTCGCCGTGGTTGT 62.934 55.000 0.00 0.00 0.00 3.32
1122 1138 2.175184 CTTCTTGCTCGCCGTGGTTG 62.175 60.000 0.00 0.00 0.00 3.77
1123 1139 1.961277 CTTCTTGCTCGCCGTGGTT 60.961 57.895 0.00 0.00 0.00 3.67
1131 1150 2.694760 GGCCTTGGCTTCTTGCTCG 61.695 63.158 11.71 0.00 42.39 5.03
1200 1222 0.252284 AGAACACGATCCCCAGGTCT 60.252 55.000 0.00 0.00 0.00 3.85
1260 1282 2.757917 AGCGACTCCTCCAGCTCC 60.758 66.667 0.00 0.00 34.48 4.70
1453 1475 2.284151 GTCCTCCTCCTCCCCCTC 59.716 72.222 0.00 0.00 0.00 4.30
1454 1476 3.756783 CGTCCTCCTCCTCCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
1455 1477 3.752167 TCGTCCTCCTCCTCCCCC 61.752 72.222 0.00 0.00 0.00 5.40
1456 1478 2.442458 GTCGTCCTCCTCCTCCCC 60.442 72.222 0.00 0.00 0.00 4.81
1457 1479 2.829458 CGTCGTCCTCCTCCTCCC 60.829 72.222 0.00 0.00 0.00 4.30
1458 1480 2.114051 GTCGTCGTCCTCCTCCTCC 61.114 68.421 0.00 0.00 0.00 4.30
1470 1492 4.790962 TCCCCCTCCTCGTCGTCG 62.791 72.222 0.00 0.00 38.55 5.12
1473 1495 4.124943 TCCTCCCCCTCCTCGTCG 62.125 72.222 0.00 0.00 0.00 5.12
1661 1683 1.960994 GCGCTTGAACTCCTCGAAGC 61.961 60.000 0.00 0.00 36.05 3.86
1723 1751 1.437149 TGGGGAGGGAGAGAAGAAGAA 59.563 52.381 0.00 0.00 0.00 2.52
1726 1754 1.007721 CTCTGGGGAGGGAGAGAAGAA 59.992 57.143 0.00 0.00 38.42 2.52
1728 1756 0.633921 TCTCTGGGGAGGGAGAGAAG 59.366 60.000 0.00 0.00 41.41 2.85
1734 1762 0.563173 ATTCGATCTCTGGGGAGGGA 59.437 55.000 0.00 0.00 39.86 4.20
1953 2223 3.194542 GTCAGTAACACAGCAGAGGAGAT 59.805 47.826 0.00 0.00 0.00 2.75
1978 2248 7.482654 TTTACATGCATACTTGATAGAGTGC 57.517 36.000 0.00 0.00 36.52 4.40
2030 2301 8.435187 TCCTTATGCATTGAGTGAGATCTTAAT 58.565 33.333 3.54 0.00 0.00 1.40
2031 2302 7.795047 TCCTTATGCATTGAGTGAGATCTTAA 58.205 34.615 3.54 0.00 0.00 1.85
2032 2303 7.365497 TCCTTATGCATTGAGTGAGATCTTA 57.635 36.000 3.54 0.00 0.00 2.10
2045 2316 3.318275 CAGCAGAGCAATCCTTATGCATT 59.682 43.478 3.54 0.00 46.22 3.56
2050 2325 2.092538 ACAGCAGCAGAGCAATCCTTAT 60.093 45.455 0.00 0.00 36.85 1.73
2055 2330 1.136984 GCACAGCAGCAGAGCAATC 59.863 57.895 2.26 0.00 36.85 2.67
2065 2340 3.057806 TGATCATTTCACAAGCACAGCAG 60.058 43.478 0.00 0.00 0.00 4.24
2084 2359 4.989279 ACAAGTGCAAAGAAACACTGAT 57.011 36.364 0.00 0.00 46.17 2.90
2088 2363 8.628882 AGTAATTAACAAGTGCAAAGAAACAC 57.371 30.769 0.00 0.00 37.05 3.32
2091 2366 8.682710 AGTGAGTAATTAACAAGTGCAAAGAAA 58.317 29.630 0.00 0.00 0.00 2.52
2094 2369 8.774586 ACTAGTGAGTAATTAACAAGTGCAAAG 58.225 33.333 0.00 0.00 32.65 2.77
2095 2370 8.556194 CACTAGTGAGTAATTAACAAGTGCAAA 58.444 33.333 18.45 0.00 33.32 3.68
2098 2373 7.653767 ACACTAGTGAGTAATTAACAAGTGC 57.346 36.000 29.30 0.00 36.21 4.40
2124 2399 6.987992 TCGTCCCATAATATAAGAGCGTTTTT 59.012 34.615 0.00 0.00 0.00 1.94
2125 2400 6.518493 TCGTCCCATAATATAAGAGCGTTTT 58.482 36.000 0.00 0.00 0.00 2.43
2126 2401 6.092955 TCGTCCCATAATATAAGAGCGTTT 57.907 37.500 0.00 0.00 0.00 3.60
2127 2402 5.717078 TCGTCCCATAATATAAGAGCGTT 57.283 39.130 0.00 0.00 0.00 4.84
2128 2403 5.336531 CCTTCGTCCCATAATATAAGAGCGT 60.337 44.000 0.00 0.00 0.00 5.07
2129 2404 5.103000 CCTTCGTCCCATAATATAAGAGCG 58.897 45.833 0.00 0.00 0.00 5.03
2130 2405 6.282199 TCCTTCGTCCCATAATATAAGAGC 57.718 41.667 0.00 0.00 0.00 4.09
2131 2406 7.897864 ACTTCCTTCGTCCCATAATATAAGAG 58.102 38.462 0.00 0.00 0.00 2.85
2132 2407 7.850935 ACTTCCTTCGTCCCATAATATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
2133 2408 9.587772 CATACTTCCTTCGTCCCATAATATAAG 57.412 37.037 0.00 0.00 0.00 1.73
2134 2409 9.096823 ACATACTTCCTTCGTCCCATAATATAA 57.903 33.333 0.00 0.00 0.00 0.98
2135 2410 8.528643 CACATACTTCCTTCGTCCCATAATATA 58.471 37.037 0.00 0.00 0.00 0.86
2136 2411 7.386851 CACATACTTCCTTCGTCCCATAATAT 58.613 38.462 0.00 0.00 0.00 1.28
2137 2412 6.740401 GCACATACTTCCTTCGTCCCATAATA 60.740 42.308 0.00 0.00 0.00 0.98
2138 2413 5.611374 CACATACTTCCTTCGTCCCATAAT 58.389 41.667 0.00 0.00 0.00 1.28
2139 2414 4.682320 GCACATACTTCCTTCGTCCCATAA 60.682 45.833 0.00 0.00 0.00 1.90
2140 2415 3.181469 GCACATACTTCCTTCGTCCCATA 60.181 47.826 0.00 0.00 0.00 2.74
2141 2416 2.420129 GCACATACTTCCTTCGTCCCAT 60.420 50.000 0.00 0.00 0.00 4.00
2142 2417 1.066430 GCACATACTTCCTTCGTCCCA 60.066 52.381 0.00 0.00 0.00 4.37
2143 2418 1.653151 GCACATACTTCCTTCGTCCC 58.347 55.000 0.00 0.00 0.00 4.46
2144 2419 1.066430 TGGCACATACTTCCTTCGTCC 60.066 52.381 0.00 0.00 0.00 4.79
2145 2420 2.380084 TGGCACATACTTCCTTCGTC 57.620 50.000 0.00 0.00 0.00 4.20
2146 2421 2.851263 TTGGCACATACTTCCTTCGT 57.149 45.000 0.00 0.00 39.30 3.85
2147 2422 4.701956 AAATTGGCACATACTTCCTTCG 57.298 40.909 0.00 0.00 39.30 3.79
2227 2506 5.582665 CACAAAGGCAGATAGGTACTTTCTC 59.417 44.000 0.00 0.00 42.98 2.87
2237 2516 4.579869 ACCTTGTACACAAAGGCAGATAG 58.420 43.478 11.33 0.00 35.15 2.08
2238 2517 4.634012 ACCTTGTACACAAAGGCAGATA 57.366 40.909 11.33 0.00 35.15 1.98
2239 2518 3.508845 ACCTTGTACACAAAGGCAGAT 57.491 42.857 11.33 0.00 35.15 2.90
2240 2519 3.244422 CCTACCTTGTACACAAAGGCAGA 60.244 47.826 12.26 0.00 35.15 4.26
2290 2584 7.913674 ACTCAGTCTCCAGATGTAATTTTTC 57.086 36.000 0.00 0.00 0.00 2.29
2295 2589 5.247110 ACACAACTCAGTCTCCAGATGTAAT 59.753 40.000 0.00 0.00 0.00 1.89
2338 2634 7.504922 TTGATTTGTTCAAAAGACAAGAACG 57.495 32.000 2.11 0.00 43.36 3.95
2375 2673 1.073284 GCCCAAAGACCCACTCAACTA 59.927 52.381 0.00 0.00 0.00 2.24
2392 2690 1.216977 GGGTAAAAATGGCACGCCC 59.783 57.895 5.42 0.00 34.56 6.13
2473 2771 4.526970 TGGGCCTACATCTCAAGATTTTC 58.473 43.478 4.53 0.00 31.21 2.29
2497 2795 5.756347 TCTCGAAAAGTCCATTCTCGAAAAA 59.244 36.000 0.00 0.00 38.01 1.94
2498 2796 5.294356 TCTCGAAAAGTCCATTCTCGAAAA 58.706 37.500 0.00 0.00 38.01 2.29
2499 2797 4.878439 TCTCGAAAAGTCCATTCTCGAAA 58.122 39.130 0.00 0.00 38.01 3.46
2500 2798 4.514781 TCTCGAAAAGTCCATTCTCGAA 57.485 40.909 0.00 0.00 38.01 3.71
2501 2799 4.082190 ACATCTCGAAAAGTCCATTCTCGA 60.082 41.667 0.00 0.00 37.06 4.04
2502 2800 4.177026 ACATCTCGAAAAGTCCATTCTCG 58.823 43.478 0.00 0.00 0.00 4.04
2503 2801 5.751028 CCTACATCTCGAAAAGTCCATTCTC 59.249 44.000 0.00 0.00 0.00 2.87
2504 2802 5.665459 CCTACATCTCGAAAAGTCCATTCT 58.335 41.667 0.00 0.00 0.00 2.40
2505 2803 4.271291 GCCTACATCTCGAAAAGTCCATTC 59.729 45.833 0.00 0.00 0.00 2.67
2506 2804 4.192317 GCCTACATCTCGAAAAGTCCATT 58.808 43.478 0.00 0.00 0.00 3.16
2507 2805 3.432326 GGCCTACATCTCGAAAAGTCCAT 60.432 47.826 0.00 0.00 0.00 3.41
2508 2806 2.093658 GGCCTACATCTCGAAAAGTCCA 60.094 50.000 0.00 0.00 0.00 4.02
2509 2807 2.168728 AGGCCTACATCTCGAAAAGTCC 59.831 50.000 1.29 0.00 0.00 3.85
2510 2808 3.190874 CAGGCCTACATCTCGAAAAGTC 58.809 50.000 3.98 0.00 0.00 3.01
2511 2809 2.567615 ACAGGCCTACATCTCGAAAAGT 59.432 45.455 3.98 0.00 0.00 2.66
2512 2810 3.252974 ACAGGCCTACATCTCGAAAAG 57.747 47.619 3.98 0.00 0.00 2.27
2513 2811 3.767673 AGTACAGGCCTACATCTCGAAAA 59.232 43.478 3.98 0.00 0.00 2.29
2514 2812 3.362706 AGTACAGGCCTACATCTCGAAA 58.637 45.455 3.98 0.00 0.00 3.46
2515 2813 3.014304 AGTACAGGCCTACATCTCGAA 57.986 47.619 3.98 0.00 0.00 3.71
2516 2814 2.730934 AGTACAGGCCTACATCTCGA 57.269 50.000 3.98 0.00 0.00 4.04
2517 2815 3.119101 ACAAAGTACAGGCCTACATCTCG 60.119 47.826 3.98 0.00 0.00 4.04
2575 2873 3.057596 CACGCAGGTGGTTATTTTGATGT 60.058 43.478 0.00 0.00 40.58 3.06
2606 2904 0.525761 ATGATGACAAAAACGGCCGG 59.474 50.000 31.76 13.93 0.00 6.13
2618 2916 7.661437 AGAGTCTCAGACTACTATGATGATGAC 59.339 40.741 7.51 0.00 43.53 3.06
2621 2919 7.744733 TCAGAGTCTCAGACTACTATGATGAT 58.255 38.462 7.51 0.00 43.53 2.45
2624 2922 7.136822 ACTCAGAGTCTCAGACTACTATGAT 57.863 40.000 7.51 0.00 43.53 2.45
2629 2927 5.748670 TGTACTCAGAGTCTCAGACTACT 57.251 43.478 7.51 4.14 43.53 2.57
2632 2930 5.381757 AGTTTGTACTCAGAGTCTCAGACT 58.618 41.667 7.17 7.17 46.42 3.24
2633 2931 5.699097 AGTTTGTACTCAGAGTCTCAGAC 57.301 43.478 6.27 12.55 0.00 3.51
2649 2947 2.365617 AGACCAGTGACGATGAGTTTGT 59.634 45.455 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.