Multiple sequence alignment - TraesCS7B01G033900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G033900 chr7B 100.000 4093 0 0 1 4093 33546428 33550520 0.000000e+00 7559.0
1 TraesCS7B01G033900 chr7B 82.783 575 61 20 1026 1581 83559966 83560521 2.860000e-131 479.0
2 TraesCS7B01G033900 chr7A 91.631 3047 190 26 271 3287 85421328 85424339 0.000000e+00 4154.0
3 TraesCS7B01G033900 chr7A 88.807 813 48 16 3315 4093 85424336 85425139 0.000000e+00 957.0
4 TraesCS7B01G033900 chr7D 93.370 2383 115 27 661 3017 83799551 83801916 0.000000e+00 3485.0
5 TraesCS7B01G033900 chr7D 90.538 1078 61 14 3017 4088 83802019 83803061 0.000000e+00 1387.0
6 TraesCS7B01G033900 chr1A 85.612 556 51 14 1044 1581 175601944 175602488 1.290000e-154 556.0
7 TraesCS7B01G033900 chr3A 85.252 556 55 14 1044 1581 408567098 408567644 7.740000e-152 547.0
8 TraesCS7B01G033900 chr1B 83.993 556 53 16 1044 1581 687610407 687609870 6.110000e-138 501.0
9 TraesCS7B01G033900 chr1B 97.297 37 1 0 3916 3952 73136676 73136640 3.420000e-06 63.9
10 TraesCS7B01G033900 chr1B 97.297 37 1 0 3916 3952 73369636 73369600 3.420000e-06 63.9
11 TraesCS7B01G033900 chr1B 97.222 36 1 0 3917 3952 73283452 73283417 1.230000e-05 62.1
12 TraesCS7B01G033900 chr3B 83.130 575 57 18 1025 1581 27125902 27125350 4.760000e-134 488.0
13 TraesCS7B01G033900 chr2A 77.419 341 34 18 3778 4093 497459547 497459225 3.270000e-36 163.0
14 TraesCS7B01G033900 chr2A 76.833 341 36 18 3778 4093 497472799 497472477 7.090000e-33 152.0
15 TraesCS7B01G033900 chrUn 97.297 37 1 0 3916 3952 355781816 355781852 3.420000e-06 63.9
16 TraesCS7B01G033900 chrUn 97.297 37 1 0 3916 3952 355871615 355871579 3.420000e-06 63.9
17 TraesCS7B01G033900 chrUn 97.297 37 1 0 3916 3952 471832328 471832364 3.420000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G033900 chr7B 33546428 33550520 4092 False 7559.0 7559 100.000 1 4093 1 chr7B.!!$F1 4092
1 TraesCS7B01G033900 chr7B 83559966 83560521 555 False 479.0 479 82.783 1026 1581 1 chr7B.!!$F2 555
2 TraesCS7B01G033900 chr7A 85421328 85425139 3811 False 2555.5 4154 90.219 271 4093 2 chr7A.!!$F1 3822
3 TraesCS7B01G033900 chr7D 83799551 83803061 3510 False 2436.0 3485 91.954 661 4088 2 chr7D.!!$F1 3427
4 TraesCS7B01G033900 chr1A 175601944 175602488 544 False 556.0 556 85.612 1044 1581 1 chr1A.!!$F1 537
5 TraesCS7B01G033900 chr3A 408567098 408567644 546 False 547.0 547 85.252 1044 1581 1 chr3A.!!$F1 537
6 TraesCS7B01G033900 chr1B 687609870 687610407 537 True 501.0 501 83.993 1044 1581 1 chr1B.!!$R4 537
7 TraesCS7B01G033900 chr3B 27125350 27125902 552 True 488.0 488 83.130 1025 1581 1 chr3B.!!$R1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.029577 TAGTGTATGGGGCCATGGGA 60.030 55.000 15.13 0.0 37.82 4.37 F
193 194 0.251341 GTATGGGGCCATGGGATGTC 60.251 60.000 15.13 0.0 37.82 3.06 F
467 468 0.323178 AAAGGAGGTGCAGAGCATGG 60.323 55.000 0.00 0.0 41.91 3.66 F
550 552 0.737715 TGCACGCAACCAAACAAACC 60.738 50.000 0.00 0.0 0.00 3.27 F
787 797 0.787787 CGAATCAAACGAACCGCAGA 59.212 50.000 0.00 0.0 0.00 4.26 F
1726 1770 1.445582 GTACACGGCCCTTGTCTCG 60.446 63.158 7.93 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2144 1.098050 GACCCAACTGCCAAGCATAG 58.902 55.000 0.00 0.0 38.13 2.23 R
2106 2152 1.227853 AAGACGTGACCCAACTGCC 60.228 57.895 0.00 0.0 0.00 4.85 R
2209 2255 4.152223 CGAATTTGGAAAACCAGGAAATGC 59.848 41.667 0.00 0.0 0.00 3.56 R
2232 2278 4.979815 CGGAAAACATACCAGGAAAAACAC 59.020 41.667 0.00 0.0 0.00 3.32 R
2561 2607 5.168569 ACGTTGTATGTGACTATTGTCCAG 58.831 41.667 4.82 0.0 42.28 3.86 R
3174 3325 0.036010 CCTCTGAATTGCCACCGACT 60.036 55.000 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.364972 GCATTAGGCATGGGTAGGTT 57.635 50.000 0.00 0.00 43.97 3.50
26 27 1.956477 GCATTAGGCATGGGTAGGTTG 59.044 52.381 0.00 0.00 43.97 3.77
27 28 2.686715 GCATTAGGCATGGGTAGGTTGT 60.687 50.000 0.00 0.00 43.97 3.32
28 29 3.631250 CATTAGGCATGGGTAGGTTGTT 58.369 45.455 0.00 0.00 0.00 2.83
29 30 4.787551 CATTAGGCATGGGTAGGTTGTTA 58.212 43.478 0.00 0.00 0.00 2.41
30 31 4.497291 TTAGGCATGGGTAGGTTGTTAG 57.503 45.455 0.00 0.00 0.00 2.34
31 32 2.557869 AGGCATGGGTAGGTTGTTAGA 58.442 47.619 0.00 0.00 0.00 2.10
32 33 2.505819 AGGCATGGGTAGGTTGTTAGAG 59.494 50.000 0.00 0.00 0.00 2.43
33 34 2.504175 GGCATGGGTAGGTTGTTAGAGA 59.496 50.000 0.00 0.00 0.00 3.10
34 35 3.532542 GCATGGGTAGGTTGTTAGAGAC 58.467 50.000 0.00 0.00 0.00 3.36
35 36 3.197983 GCATGGGTAGGTTGTTAGAGACT 59.802 47.826 0.00 0.00 0.00 3.24
36 37 4.323562 GCATGGGTAGGTTGTTAGAGACTT 60.324 45.833 0.00 0.00 0.00 3.01
37 38 4.884668 TGGGTAGGTTGTTAGAGACTTG 57.115 45.455 0.00 0.00 0.00 3.16
38 39 4.228824 TGGGTAGGTTGTTAGAGACTTGT 58.771 43.478 0.00 0.00 0.00 3.16
39 40 4.039973 TGGGTAGGTTGTTAGAGACTTGTG 59.960 45.833 0.00 0.00 0.00 3.33
40 41 4.282703 GGGTAGGTTGTTAGAGACTTGTGA 59.717 45.833 0.00 0.00 0.00 3.58
41 42 5.046520 GGGTAGGTTGTTAGAGACTTGTGAT 60.047 44.000 0.00 0.00 0.00 3.06
42 43 6.465084 GGTAGGTTGTTAGAGACTTGTGATT 58.535 40.000 0.00 0.00 0.00 2.57
43 44 7.310237 GGGTAGGTTGTTAGAGACTTGTGATTA 60.310 40.741 0.00 0.00 0.00 1.75
44 45 8.258708 GGTAGGTTGTTAGAGACTTGTGATTAT 58.741 37.037 0.00 0.00 0.00 1.28
45 46 9.654663 GTAGGTTGTTAGAGACTTGTGATTATT 57.345 33.333 0.00 0.00 0.00 1.40
46 47 8.779354 AGGTTGTTAGAGACTTGTGATTATTC 57.221 34.615 0.00 0.00 0.00 1.75
47 48 8.598041 AGGTTGTTAGAGACTTGTGATTATTCT 58.402 33.333 0.00 0.00 0.00 2.40
48 49 9.220767 GGTTGTTAGAGACTTGTGATTATTCTT 57.779 33.333 0.00 0.00 0.00 2.52
55 56 9.868277 AGAGACTTGTGATTATTCTTTCTACAG 57.132 33.333 0.00 0.00 0.00 2.74
56 57 9.646427 GAGACTTGTGATTATTCTTTCTACAGT 57.354 33.333 0.00 0.00 0.00 3.55
100 101 5.798434 TCAGTATTGTCGTAAACTGATGTCG 59.202 40.000 0.10 0.00 42.46 4.35
101 102 5.004440 CAGTATTGTCGTAAACTGATGTCGG 59.996 44.000 0.00 0.00 41.47 4.79
102 103 3.374220 TTGTCGTAAACTGATGTCGGT 57.626 42.857 0.00 0.00 36.96 4.69
103 104 3.374220 TGTCGTAAACTGATGTCGGTT 57.626 42.857 1.43 1.43 46.62 4.44
104 105 4.502171 TGTCGTAAACTGATGTCGGTTA 57.498 40.909 7.59 0.00 44.10 2.85
105 106 5.063180 TGTCGTAAACTGATGTCGGTTAT 57.937 39.130 7.59 2.30 44.10 1.89
106 107 4.860352 TGTCGTAAACTGATGTCGGTTATG 59.140 41.667 7.59 2.68 44.10 1.90
107 108 4.266976 GTCGTAAACTGATGTCGGTTATGG 59.733 45.833 7.59 1.32 44.10 2.74
108 109 3.554324 CGTAAACTGATGTCGGTTATGGG 59.446 47.826 7.59 0.00 44.10 4.00
109 110 2.038387 AACTGATGTCGGTTATGGGC 57.962 50.000 5.45 0.00 43.14 5.36
110 111 0.908910 ACTGATGTCGGTTATGGGCA 59.091 50.000 0.00 0.00 29.59 5.36
111 112 1.490490 ACTGATGTCGGTTATGGGCAT 59.510 47.619 0.00 0.00 29.59 4.40
112 113 1.875514 CTGATGTCGGTTATGGGCATG 59.124 52.381 0.00 0.00 0.00 4.06
113 114 1.238439 GATGTCGGTTATGGGCATGG 58.762 55.000 0.00 0.00 0.00 3.66
114 115 0.550914 ATGTCGGTTATGGGCATGGT 59.449 50.000 0.00 0.00 0.00 3.55
115 116 0.107410 TGTCGGTTATGGGCATGGTC 60.107 55.000 0.00 0.00 0.00 4.02
116 117 0.180406 GTCGGTTATGGGCATGGTCT 59.820 55.000 0.00 0.00 0.00 3.85
117 118 1.414919 GTCGGTTATGGGCATGGTCTA 59.585 52.381 0.00 0.00 0.00 2.59
118 119 1.414919 TCGGTTATGGGCATGGTCTAC 59.585 52.381 0.00 0.00 0.00 2.59
119 120 1.542547 CGGTTATGGGCATGGTCTACC 60.543 57.143 0.00 0.00 0.00 3.18
120 121 1.202891 GGTTATGGGCATGGTCTACCC 60.203 57.143 0.00 0.00 44.52 3.69
121 122 1.145571 TTATGGGCATGGTCTACCCC 58.854 55.000 3.19 0.26 43.54 4.95
122 123 0.770557 TATGGGCATGGTCTACCCCC 60.771 60.000 5.29 5.29 43.54 5.40
136 137 3.354678 CCCCCAAGACTTGCGTTG 58.645 61.111 9.85 0.00 0.00 4.10
137 138 1.528309 CCCCCAAGACTTGCGTTGT 60.528 57.895 9.85 0.00 0.00 3.32
138 139 1.106944 CCCCCAAGACTTGCGTTGTT 61.107 55.000 9.85 0.00 0.00 2.83
139 140 0.744281 CCCCAAGACTTGCGTTGTTT 59.256 50.000 9.85 0.00 0.00 2.83
140 141 1.269051 CCCCAAGACTTGCGTTGTTTC 60.269 52.381 9.85 0.00 0.00 2.78
141 142 1.596954 CCCAAGACTTGCGTTGTTTCG 60.597 52.381 9.85 0.00 0.00 3.46
142 143 1.329292 CCAAGACTTGCGTTGTTTCGA 59.671 47.619 9.85 0.00 0.00 3.71
143 144 2.032030 CCAAGACTTGCGTTGTTTCGAT 60.032 45.455 9.85 0.00 0.00 3.59
144 145 2.949714 AGACTTGCGTTGTTTCGATG 57.050 45.000 0.00 0.00 0.00 3.84
145 146 2.479837 AGACTTGCGTTGTTTCGATGA 58.520 42.857 0.00 0.00 0.00 2.92
146 147 2.476619 AGACTTGCGTTGTTTCGATGAG 59.523 45.455 0.00 0.00 0.00 2.90
147 148 1.531149 ACTTGCGTTGTTTCGATGAGG 59.469 47.619 0.00 0.00 0.00 3.86
148 149 0.871722 TTGCGTTGTTTCGATGAGGG 59.128 50.000 0.00 0.00 0.00 4.30
149 150 0.953471 TGCGTTGTTTCGATGAGGGG 60.953 55.000 0.00 0.00 0.00 4.79
150 151 0.953960 GCGTTGTTTCGATGAGGGGT 60.954 55.000 0.00 0.00 0.00 4.95
151 152 1.519408 CGTTGTTTCGATGAGGGGTT 58.481 50.000 0.00 0.00 0.00 4.11
152 153 1.463444 CGTTGTTTCGATGAGGGGTTC 59.537 52.381 0.00 0.00 0.00 3.62
153 154 2.500229 GTTGTTTCGATGAGGGGTTCA 58.500 47.619 0.00 0.00 40.85 3.18
154 155 2.882137 GTTGTTTCGATGAGGGGTTCAA 59.118 45.455 0.00 0.00 39.77 2.69
155 156 2.500229 TGTTTCGATGAGGGGTTCAAC 58.500 47.619 0.00 0.00 39.77 3.18
156 157 1.810755 GTTTCGATGAGGGGTTCAACC 59.189 52.381 0.00 0.00 39.77 3.77
166 167 3.765968 GGTTCAACCCCCTCATGTT 57.234 52.632 0.00 0.00 30.04 2.71
167 168 2.891191 GGTTCAACCCCCTCATGTTA 57.109 50.000 0.00 0.00 30.04 2.41
168 169 2.723273 GGTTCAACCCCCTCATGTTAG 58.277 52.381 0.00 0.00 30.04 2.34
169 170 2.307686 GGTTCAACCCCCTCATGTTAGA 59.692 50.000 0.00 0.00 30.04 2.10
170 171 3.053619 GGTTCAACCCCCTCATGTTAGAT 60.054 47.826 0.00 0.00 30.04 1.98
171 172 4.165372 GGTTCAACCCCCTCATGTTAGATA 59.835 45.833 0.00 0.00 30.04 1.98
172 173 5.368989 GTTCAACCCCCTCATGTTAGATAG 58.631 45.833 0.00 0.00 0.00 2.08
173 174 4.631234 TCAACCCCCTCATGTTAGATAGT 58.369 43.478 0.00 0.00 0.00 2.12
174 175 4.408921 TCAACCCCCTCATGTTAGATAGTG 59.591 45.833 0.00 0.00 0.00 2.74
175 176 4.008916 ACCCCCTCATGTTAGATAGTGT 57.991 45.455 0.00 0.00 0.00 3.55
176 177 5.152306 ACCCCCTCATGTTAGATAGTGTA 57.848 43.478 0.00 0.00 0.00 2.90
177 178 5.727630 ACCCCCTCATGTTAGATAGTGTAT 58.272 41.667 0.00 0.00 0.00 2.29
178 179 5.544176 ACCCCCTCATGTTAGATAGTGTATG 59.456 44.000 0.00 0.00 0.00 2.39
179 180 5.046304 CCCCCTCATGTTAGATAGTGTATGG 60.046 48.000 0.00 0.00 0.00 2.74
180 181 5.046304 CCCCTCATGTTAGATAGTGTATGGG 60.046 48.000 0.00 0.00 0.00 4.00
181 182 5.046304 CCCTCATGTTAGATAGTGTATGGGG 60.046 48.000 0.00 0.00 36.23 4.96
182 183 5.482908 CTCATGTTAGATAGTGTATGGGGC 58.517 45.833 0.00 0.00 0.00 5.80
183 184 4.286032 TCATGTTAGATAGTGTATGGGGCC 59.714 45.833 0.00 0.00 0.00 5.80
184 185 3.659841 TGTTAGATAGTGTATGGGGCCA 58.340 45.455 4.39 0.00 0.00 5.36
185 186 4.239495 TGTTAGATAGTGTATGGGGCCAT 58.761 43.478 4.39 0.00 40.19 4.40
186 187 4.041567 TGTTAGATAGTGTATGGGGCCATG 59.958 45.833 4.39 0.00 37.82 3.66
187 188 1.988107 AGATAGTGTATGGGGCCATGG 59.012 52.381 7.63 7.63 37.82 3.66
188 189 1.004745 GATAGTGTATGGGGCCATGGG 59.995 57.143 15.13 0.00 37.82 4.00
189 190 0.029577 TAGTGTATGGGGCCATGGGA 60.030 55.000 15.13 0.00 37.82 4.37
190 191 0.702356 AGTGTATGGGGCCATGGGAT 60.702 55.000 15.13 0.00 37.82 3.85
191 192 0.540365 GTGTATGGGGCCATGGGATG 60.540 60.000 15.13 0.00 37.82 3.51
192 193 0.998398 TGTATGGGGCCATGGGATGT 60.998 55.000 15.13 0.00 37.82 3.06
193 194 0.251341 GTATGGGGCCATGGGATGTC 60.251 60.000 15.13 0.00 37.82 3.06
194 195 1.778017 TATGGGGCCATGGGATGTCG 61.778 60.000 15.13 0.00 37.82 4.35
195 196 3.809013 GGGGCCATGGGATGTCGT 61.809 66.667 15.13 0.00 0.00 4.34
196 197 2.516930 GGGCCATGGGATGTCGTG 60.517 66.667 15.13 0.00 0.00 4.35
197 198 3.211963 GGCCATGGGATGTCGTGC 61.212 66.667 15.13 0.00 0.00 5.34
198 199 2.438254 GCCATGGGATGTCGTGCA 60.438 61.111 15.13 0.00 0.00 4.57
199 200 2.764314 GCCATGGGATGTCGTGCAC 61.764 63.158 15.13 6.82 0.00 4.57
200 201 1.377072 CCATGGGATGTCGTGCACA 60.377 57.895 18.64 0.81 40.18 4.57
201 202 0.959867 CCATGGGATGTCGTGCACAA 60.960 55.000 18.64 0.00 38.97 3.33
202 203 0.880441 CATGGGATGTCGTGCACAAA 59.120 50.000 18.64 0.46 38.97 2.83
203 204 1.135603 CATGGGATGTCGTGCACAAAG 60.136 52.381 18.64 0.04 38.97 2.77
204 205 1.210155 GGGATGTCGTGCACAAAGC 59.790 57.895 18.64 3.81 38.97 3.51
216 217 3.591196 GCACAAAGCACCCAATAATGA 57.409 42.857 0.00 0.00 44.79 2.57
217 218 3.924144 GCACAAAGCACCCAATAATGAA 58.076 40.909 0.00 0.00 44.79 2.57
218 219 3.679502 GCACAAAGCACCCAATAATGAAC 59.320 43.478 0.00 0.00 44.79 3.18
219 220 4.561326 GCACAAAGCACCCAATAATGAACT 60.561 41.667 0.00 0.00 44.79 3.01
220 221 5.540911 CACAAAGCACCCAATAATGAACTT 58.459 37.500 0.00 0.00 0.00 2.66
221 222 6.686630 CACAAAGCACCCAATAATGAACTTA 58.313 36.000 0.00 0.00 0.00 2.24
222 223 7.151308 CACAAAGCACCCAATAATGAACTTAA 58.849 34.615 0.00 0.00 0.00 1.85
223 224 7.818930 CACAAAGCACCCAATAATGAACTTAAT 59.181 33.333 0.00 0.00 0.00 1.40
224 225 8.374743 ACAAAGCACCCAATAATGAACTTAATT 58.625 29.630 0.00 0.00 0.00 1.40
225 226 9.868277 CAAAGCACCCAATAATGAACTTAATTA 57.132 29.630 0.00 0.00 0.00 1.40
248 249 6.949578 AATATGCTTATGTGTTTTGTGTGC 57.050 33.333 0.00 0.00 0.00 4.57
249 250 3.790152 TGCTTATGTGTTTTGTGTGCA 57.210 38.095 0.00 0.00 0.00 4.57
250 251 4.319139 TGCTTATGTGTTTTGTGTGCAT 57.681 36.364 0.00 0.00 0.00 3.96
251 252 4.049869 TGCTTATGTGTTTTGTGTGCATG 58.950 39.130 0.00 0.00 0.00 4.06
252 253 4.050553 GCTTATGTGTTTTGTGTGCATGT 58.949 39.130 0.00 0.00 0.00 3.21
253 254 4.507388 GCTTATGTGTTTTGTGTGCATGTT 59.493 37.500 0.00 0.00 0.00 2.71
254 255 5.556758 GCTTATGTGTTTTGTGTGCATGTTG 60.557 40.000 0.00 0.00 0.00 3.33
255 256 3.309961 TGTGTTTTGTGTGCATGTTGT 57.690 38.095 0.00 0.00 0.00 3.32
256 257 3.657634 TGTGTTTTGTGTGCATGTTGTT 58.342 36.364 0.00 0.00 0.00 2.83
257 258 4.809673 TGTGTTTTGTGTGCATGTTGTTA 58.190 34.783 0.00 0.00 0.00 2.41
258 259 4.861462 TGTGTTTTGTGTGCATGTTGTTAG 59.139 37.500 0.00 0.00 0.00 2.34
259 260 4.862018 GTGTTTTGTGTGCATGTTGTTAGT 59.138 37.500 0.00 0.00 0.00 2.24
260 261 4.861462 TGTTTTGTGTGCATGTTGTTAGTG 59.139 37.500 0.00 0.00 0.00 2.74
261 262 2.772568 TGTGTGCATGTTGTTAGTGC 57.227 45.000 0.00 0.00 39.26 4.40
262 263 2.296792 TGTGTGCATGTTGTTAGTGCT 58.703 42.857 0.00 0.00 39.52 4.40
263 264 2.687425 TGTGTGCATGTTGTTAGTGCTT 59.313 40.909 0.00 0.00 39.52 3.91
264 265 3.130164 TGTGTGCATGTTGTTAGTGCTTT 59.870 39.130 0.00 0.00 39.52 3.51
265 266 4.111916 GTGTGCATGTTGTTAGTGCTTTT 58.888 39.130 0.00 0.00 39.52 2.27
266 267 4.026640 GTGTGCATGTTGTTAGTGCTTTTG 60.027 41.667 0.00 0.00 39.52 2.44
267 268 4.142293 TGTGCATGTTGTTAGTGCTTTTGA 60.142 37.500 0.00 0.00 39.52 2.69
268 269 4.803088 GTGCATGTTGTTAGTGCTTTTGAA 59.197 37.500 0.00 0.00 39.52 2.69
269 270 5.290643 GTGCATGTTGTTAGTGCTTTTGAAA 59.709 36.000 0.00 0.00 39.52 2.69
270 271 6.018832 GTGCATGTTGTTAGTGCTTTTGAAAT 60.019 34.615 0.00 0.00 39.52 2.17
271 272 6.018913 TGCATGTTGTTAGTGCTTTTGAAATG 60.019 34.615 0.00 0.00 39.52 2.32
272 273 6.200665 GCATGTTGTTAGTGCTTTTGAAATGA 59.799 34.615 0.00 0.00 36.02 2.57
273 274 7.095523 GCATGTTGTTAGTGCTTTTGAAATGAT 60.096 33.333 0.00 0.00 36.02 2.45
274 275 7.928908 TGTTGTTAGTGCTTTTGAAATGATC 57.071 32.000 0.00 0.00 0.00 2.92
275 276 6.636447 TGTTGTTAGTGCTTTTGAAATGATCG 59.364 34.615 0.00 0.00 0.00 3.69
276 277 6.312399 TGTTAGTGCTTTTGAAATGATCGT 57.688 33.333 0.00 0.00 0.00 3.73
277 278 6.142139 TGTTAGTGCTTTTGAAATGATCGTG 58.858 36.000 0.00 0.00 0.00 4.35
278 279 3.568538 AGTGCTTTTGAAATGATCGTGC 58.431 40.909 0.00 0.00 0.00 5.34
279 280 2.339400 GTGCTTTTGAAATGATCGTGCG 59.661 45.455 0.00 0.00 0.00 5.34
280 281 2.031245 TGCTTTTGAAATGATCGTGCGT 60.031 40.909 0.00 0.00 0.00 5.24
281 282 2.339400 GCTTTTGAAATGATCGTGCGTG 59.661 45.455 0.00 0.00 0.00 5.34
282 283 3.809234 CTTTTGAAATGATCGTGCGTGA 58.191 40.909 0.00 0.00 0.00 4.35
283 284 4.406069 CTTTTGAAATGATCGTGCGTGAT 58.594 39.130 0.00 0.00 0.00 3.06
284 285 3.388149 TTGAAATGATCGTGCGTGATG 57.612 42.857 0.00 0.00 0.00 3.07
285 286 1.062440 TGAAATGATCGTGCGTGATGC 59.938 47.619 0.00 0.00 46.70 3.91
300 301 4.633126 GCGTGATGCATAGGATGATAATGT 59.367 41.667 0.00 0.00 45.45 2.71
301 302 5.122869 GCGTGATGCATAGGATGATAATGTT 59.877 40.000 0.00 0.00 45.45 2.71
302 303 6.540205 CGTGATGCATAGGATGATAATGTTG 58.460 40.000 0.00 0.00 0.00 3.33
310 311 8.355169 GCATAGGATGATAATGTTGTCATGTTT 58.645 33.333 9.31 0.00 38.83 2.83
324 325 6.228273 TGTCATGTTTAAAAGAGAAGAGCG 57.772 37.500 0.00 0.00 0.00 5.03
325 326 5.179368 TGTCATGTTTAAAAGAGAAGAGCGG 59.821 40.000 0.00 0.00 0.00 5.52
328 329 5.668558 TGTTTAAAAGAGAAGAGCGGAAC 57.331 39.130 0.00 0.00 0.00 3.62
331 332 2.464157 AAAGAGAAGAGCGGAACAGG 57.536 50.000 0.00 0.00 0.00 4.00
333 334 1.633774 AGAGAAGAGCGGAACAGGAA 58.366 50.000 0.00 0.00 0.00 3.36
334 335 1.971357 AGAGAAGAGCGGAACAGGAAA 59.029 47.619 0.00 0.00 0.00 3.13
335 336 2.028567 AGAGAAGAGCGGAACAGGAAAG 60.029 50.000 0.00 0.00 0.00 2.62
351 352 5.070313 ACAGGAAAGTTGCACATAACCAAAT 59.930 36.000 0.00 0.00 0.00 2.32
354 355 6.266558 AGGAAAGTTGCACATAACCAAATACA 59.733 34.615 0.00 0.00 0.00 2.29
356 357 7.063308 GGAAAGTTGCACATAACCAAATACATG 59.937 37.037 0.00 0.00 0.00 3.21
363 364 7.170489 TGCACATAACCAAATACATGTGTTTTG 59.830 33.333 16.91 19.16 46.37 2.44
367 368 6.783892 AACCAAATACATGTGTTTTGCATC 57.216 33.333 16.91 0.00 31.25 3.91
373 374 2.029649 ACATGTGTTTTGCATCTGCTCC 60.030 45.455 0.00 0.00 42.66 4.70
378 379 0.612732 TTTTGCATCTGCTCCCCCTG 60.613 55.000 3.53 0.00 42.66 4.45
382 383 0.323725 GCATCTGCTCCCCCTGAAAA 60.324 55.000 0.00 0.00 38.21 2.29
383 384 1.687368 GCATCTGCTCCCCCTGAAAAT 60.687 52.381 0.00 0.00 38.21 1.82
402 403 3.771577 ATACATAGGCAGGCAGGTAAC 57.228 47.619 0.00 0.00 0.00 2.50
404 405 0.532862 CATAGGCAGGCAGGTAACCG 60.533 60.000 0.00 0.00 37.17 4.44
409 410 0.887387 GCAGGCAGGTAACCGAACAA 60.887 55.000 0.00 0.00 37.17 2.83
413 414 1.951602 GGCAGGTAACCGAACAAAAGT 59.048 47.619 0.00 0.00 37.17 2.66
418 419 5.390567 GCAGGTAACCGAACAAAAGTCATAG 60.391 44.000 0.00 0.00 37.17 2.23
435 436 4.959723 TCATAGAAATGACCATCGATGCA 58.040 39.130 20.25 13.58 37.20 3.96
442 443 3.817709 TGACCATCGATGCAATACAGA 57.182 42.857 20.25 0.00 0.00 3.41
444 445 2.802816 GACCATCGATGCAATACAGACC 59.197 50.000 20.25 0.00 0.00 3.85
451 452 4.571984 TCGATGCAATACAGACCATCAAAG 59.428 41.667 0.00 0.00 35.08 2.77
458 459 1.271597 ACAGACCATCAAAGGAGGTGC 60.272 52.381 0.00 0.00 35.36 5.01
460 461 1.004044 AGACCATCAAAGGAGGTGCAG 59.996 52.381 0.00 0.00 35.36 4.41
461 462 1.003580 GACCATCAAAGGAGGTGCAGA 59.996 52.381 0.00 0.00 35.36 4.26
462 463 1.004044 ACCATCAAAGGAGGTGCAGAG 59.996 52.381 0.00 0.00 33.57 3.35
463 464 1.093159 CATCAAAGGAGGTGCAGAGC 58.907 55.000 0.00 0.00 0.00 4.09
464 465 0.694771 ATCAAAGGAGGTGCAGAGCA 59.305 50.000 0.00 0.00 35.60 4.26
465 466 0.694771 TCAAAGGAGGTGCAGAGCAT 59.305 50.000 0.00 0.00 41.91 3.79
467 468 0.323178 AAAGGAGGTGCAGAGCATGG 60.323 55.000 0.00 0.00 41.91 3.66
468 469 2.827642 GGAGGTGCAGAGCATGGC 60.828 66.667 0.00 0.00 41.91 4.40
469 470 2.827642 GAGGTGCAGAGCATGGCC 60.828 66.667 0.00 0.00 41.91 5.36
470 471 3.336568 AGGTGCAGAGCATGGCCT 61.337 61.111 3.32 0.00 41.91 5.19
471 472 2.362120 GGTGCAGAGCATGGCCTT 60.362 61.111 3.32 0.00 41.91 4.35
473 474 1.676635 GTGCAGAGCATGGCCTTGA 60.677 57.895 22.21 0.00 41.91 3.02
474 475 1.378119 TGCAGAGCATGGCCTTGAG 60.378 57.895 22.21 9.16 31.71 3.02
475 476 2.119655 GCAGAGCATGGCCTTGAGG 61.120 63.158 22.21 8.51 38.53 3.86
491 492 4.821805 CCTTGAGGCTGTTTTTCTTAGTCA 59.178 41.667 0.00 0.00 0.00 3.41
503 504 0.895530 CTTAGTCAGGCTGAACCGGA 59.104 55.000 20.62 3.10 46.52 5.14
529 531 8.035394 ACCATAGATACATTACGCCTAGAATTG 58.965 37.037 0.00 0.00 0.00 2.32
535 537 4.273480 ACATTACGCCTAGAATTGATGCAC 59.727 41.667 0.00 0.00 0.00 4.57
545 547 1.782044 ATTGATGCACGCAACCAAAC 58.218 45.000 12.18 0.00 0.00 2.93
549 551 1.257675 GATGCACGCAACCAAACAAAC 59.742 47.619 0.00 0.00 0.00 2.93
550 552 0.737715 TGCACGCAACCAAACAAACC 60.738 50.000 0.00 0.00 0.00 3.27
583 587 5.772393 TCTAAAGTGATGGCCTTTCCTAA 57.228 39.130 3.32 0.00 34.20 2.69
590 594 2.286365 TGGCCTTTCCTAACCAACAG 57.714 50.000 3.32 0.00 35.26 3.16
591 595 1.497286 TGGCCTTTCCTAACCAACAGT 59.503 47.619 3.32 0.00 35.26 3.55
595 599 4.332828 GCCTTTCCTAACCAACAGTACAT 58.667 43.478 0.00 0.00 0.00 2.29
604 608 6.761714 CCTAACCAACAGTACATTACTCATCC 59.238 42.308 0.00 0.00 36.76 3.51
614 618 9.613957 CAGTACATTACTCATCCGTAAGATTAG 57.386 37.037 0.00 0.00 36.76 1.73
619 623 9.130312 CATTACTCATCCGTAAGATTAGCTAAC 57.870 37.037 8.70 3.23 43.02 2.34
624 628 5.511234 TCCGTAAGATTAGCTAACACTCC 57.489 43.478 8.70 5.48 43.02 3.85
625 629 4.951715 TCCGTAAGATTAGCTAACACTCCA 59.048 41.667 8.70 1.36 43.02 3.86
629 635 8.088981 CCGTAAGATTAGCTAACACTCCATAAT 58.911 37.037 8.70 0.00 43.02 1.28
640 646 5.878406 ACACTCCATAATCTAGGACTTGG 57.122 43.478 0.00 0.00 0.00 3.61
655 661 1.873591 ACTTGGAGCGTTGATGTGAAC 59.126 47.619 0.00 0.00 0.00 3.18
656 662 2.146342 CTTGGAGCGTTGATGTGAACT 58.854 47.619 0.00 0.00 0.00 3.01
657 663 2.254546 TGGAGCGTTGATGTGAACTT 57.745 45.000 0.00 0.00 0.00 2.66
711 717 6.927294 ATGAAAATCCTAGTTTTAGCGAGG 57.073 37.500 0.00 0.00 31.80 4.63
720 727 8.701908 TCCTAGTTTTAGCGAGGAATATAGAA 57.298 34.615 0.00 0.00 37.34 2.10
725 732 8.265764 AGTTTTAGCGAGGAATATAGAAAACCT 58.734 33.333 0.00 0.00 36.61 3.50
729 736 7.321745 AGCGAGGAATATAGAAAACCTTTTG 57.678 36.000 0.00 0.00 0.00 2.44
738 745 4.137116 AGAAAACCTTTTGAACTTGCCC 57.863 40.909 0.00 0.00 0.00 5.36
742 749 1.762370 ACCTTTTGAACTTGCCCCAAG 59.238 47.619 3.57 3.57 45.85 3.61
746 756 4.444733 CCTTTTGAACTTGCCCCAAGAAAT 60.445 41.667 11.56 0.00 43.42 2.17
751 761 4.347583 TGAACTTGCCCCAAGAAATTTCAT 59.652 37.500 19.99 5.47 43.42 2.57
784 794 1.060122 CCTACGAATCAAACGAACCGC 59.940 52.381 0.00 0.00 34.70 5.68
787 797 0.787787 CGAATCAAACGAACCGCAGA 59.212 50.000 0.00 0.00 0.00 4.26
825 835 5.126779 GTCCAAACCCTCTGAAATATCCTC 58.873 45.833 0.00 0.00 0.00 3.71
868 878 3.894427 TGGGTTCTTTGTATGCACAACAT 59.106 39.130 4.66 0.00 44.28 2.71
900 910 2.223502 CGGCAGAGCGTCTTGATTACTA 60.224 50.000 0.00 0.00 0.00 1.82
901 911 3.117046 GGCAGAGCGTCTTGATTACTAC 58.883 50.000 0.00 0.00 0.00 2.73
902 912 3.181485 GGCAGAGCGTCTTGATTACTACT 60.181 47.826 0.00 0.00 0.00 2.57
971 981 2.008752 GAGCTTCTTCTCCTCACTGC 57.991 55.000 0.00 0.00 0.00 4.40
979 989 1.739562 CTCCTCACTGCTCGTTGCC 60.740 63.158 1.30 0.00 42.00 4.52
1101 1112 4.332543 TTCCCCACGCTCCCCTCT 62.333 66.667 0.00 0.00 0.00 3.69
1111 1122 3.430497 TCCCCTCTCCCTCCTCCG 61.430 72.222 0.00 0.00 0.00 4.63
1259 1276 2.683933 GCGGGAGGAGGAACAGGA 60.684 66.667 0.00 0.00 0.00 3.86
1501 1541 4.785453 CCCCGCTTCACAGCTCCC 62.785 72.222 0.00 0.00 44.85 4.30
1503 1543 4.020617 CCGCTTCACAGCTCCCCA 62.021 66.667 0.00 0.00 44.85 4.96
1529 1573 2.579787 CGCGGGCTCTGTCTAACG 60.580 66.667 0.00 0.00 0.00 3.18
1726 1770 1.445582 GTACACGGCCCTTGTCTCG 60.446 63.158 7.93 0.00 0.00 4.04
1982 2026 7.672983 AGGTAATCGGCAATAAGAACATATG 57.327 36.000 0.00 0.00 0.00 1.78
2032 2077 9.950496 AGGTGCTATTTCCTTACATATCTATTG 57.050 33.333 0.00 0.00 0.00 1.90
2050 2095 7.558161 TCTATTGAATATGTCCTGCAAACTG 57.442 36.000 0.00 0.00 0.00 3.16
2051 2096 7.112122 TCTATTGAATATGTCCTGCAAACTGT 58.888 34.615 0.00 0.00 0.00 3.55
2052 2097 6.594788 ATTGAATATGTCCTGCAAACTGTT 57.405 33.333 0.00 0.00 0.00 3.16
2053 2098 6.403866 TTGAATATGTCCTGCAAACTGTTT 57.596 33.333 0.00 0.00 0.00 2.83
2056 2101 5.789643 ATATGTCCTGCAAACTGTTTTGT 57.210 34.783 2.41 0.00 43.62 2.83
2061 2106 6.039616 TGTCCTGCAAACTGTTTTGTTAATC 58.960 36.000 2.41 0.00 43.62 1.75
2077 2122 7.543947 TTGTTAATCATCAGTGATGCACTAG 57.456 36.000 25.53 4.03 43.43 2.57
2120 2166 2.908073 GCTTGGCAGTTGGGTCACG 61.908 63.158 0.00 0.00 0.00 4.35
2133 2179 4.545208 TGGGTCACGTCTTCAAATATCA 57.455 40.909 0.00 0.00 0.00 2.15
2134 2180 5.097742 TGGGTCACGTCTTCAAATATCAT 57.902 39.130 0.00 0.00 0.00 2.45
2135 2181 5.116180 TGGGTCACGTCTTCAAATATCATC 58.884 41.667 0.00 0.00 0.00 2.92
2136 2182 5.104941 TGGGTCACGTCTTCAAATATCATCT 60.105 40.000 0.00 0.00 0.00 2.90
2137 2183 6.097696 TGGGTCACGTCTTCAAATATCATCTA 59.902 38.462 0.00 0.00 0.00 1.98
2209 2255 6.128227 CCAAGTTTATTGTTGCCATCCAAATG 60.128 38.462 0.00 0.00 34.68 2.32
2218 2264 2.093394 TGCCATCCAAATGCATTTCCTG 60.093 45.455 21.70 17.10 0.00 3.86
2275 2321 5.335127 TCCGTCACGAAGTATTAAGCTAAC 58.665 41.667 0.00 0.00 41.61 2.34
2276 2322 5.097529 CCGTCACGAAGTATTAAGCTAACA 58.902 41.667 0.00 0.00 41.61 2.41
2293 2339 5.010922 AGCTAACAAGGTTTCATCATTTGCA 59.989 36.000 0.00 0.00 0.00 4.08
2504 2550 9.700831 ATTTTACTTGATTCCTATGGTAAAGCT 57.299 29.630 0.00 0.00 33.01 3.74
2561 2607 9.413048 GAGTACATGCAGAAGTATTACTATTCC 57.587 37.037 0.00 0.00 0.00 3.01
2753 2799 8.819643 AAATAGAGACAGTGTTAAGAGTTGTC 57.180 34.615 0.00 8.39 38.68 3.18
2998 3044 6.315642 CGATCTACAGACAACAAGTAGGTCTA 59.684 42.308 9.56 0.00 41.55 2.59
3074 3223 3.349927 CAAGAAGATGGAATGACCTGCA 58.650 45.455 0.00 0.00 39.86 4.41
3089 3238 2.679837 ACCTGCATAAAAGCATCACTCG 59.320 45.455 0.00 0.00 44.68 4.18
3134 3283 7.495279 AGCATCAGTCATATTCTTCTCTTTGAC 59.505 37.037 0.00 0.00 34.99 3.18
3346 3497 0.756294 TTGCGACTGAAGGGAAGTGA 59.244 50.000 0.00 0.00 0.00 3.41
3411 3562 8.999431 AGTTTCGTGACAATCAAATACAACTAT 58.001 29.630 0.00 0.00 0.00 2.12
3533 3686 3.055819 ACGCAAAGATGGAGAGAAGCTTA 60.056 43.478 0.00 0.00 0.00 3.09
3575 3731 9.787435 ATCAAATGTTGTAGTGTTCTACCTTTA 57.213 29.630 3.47 0.00 44.08 1.85
3592 3748 9.695155 TCTACCTTTAAATTTCTAGGAAATGGG 57.305 33.333 19.90 6.40 0.00 4.00
3611 3767 4.929479 TGGGCTAGTTGATTGTTTGGTAT 58.071 39.130 0.00 0.00 0.00 2.73
3771 3932 2.636647 TGTGTGTGGAGCAATCTTCA 57.363 45.000 0.00 0.00 0.00 3.02
3773 3934 3.489355 TGTGTGTGGAGCAATCTTCATT 58.511 40.909 0.00 0.00 28.87 2.57
3774 3935 3.890756 TGTGTGTGGAGCAATCTTCATTT 59.109 39.130 0.00 0.00 28.87 2.32
3775 3936 4.341806 TGTGTGTGGAGCAATCTTCATTTT 59.658 37.500 0.00 0.00 28.87 1.82
3858 4046 1.834263 GAGATGACCAGGGCTTGTAGT 59.166 52.381 0.00 0.00 0.00 2.73
3872 4060 5.163395 GGGCTTGTAGTAGCTCTGAGTTAAT 60.163 44.000 6.53 6.63 38.64 1.40
3876 4064 7.974501 GCTTGTAGTAGCTCTGAGTTAATTGTA 59.025 37.037 6.80 0.00 38.15 2.41
3898 4086 8.027524 TGTAGATATCCTCAGCTTTGAGAAAT 57.972 34.615 4.59 1.51 38.13 2.17
3954 4143 2.808543 CAGGTTTTCTGTGTCTAGTGCC 59.191 50.000 0.00 0.00 38.64 5.01
3957 4146 3.821033 GGTTTTCTGTGTCTAGTGCCATT 59.179 43.478 0.00 0.00 0.00 3.16
3958 4147 4.083271 GGTTTTCTGTGTCTAGTGCCATTC 60.083 45.833 0.00 0.00 0.00 2.67
3960 4149 4.558226 TTCTGTGTCTAGTGCCATTCAT 57.442 40.909 0.00 0.00 0.00 2.57
3961 4150 4.128925 TCTGTGTCTAGTGCCATTCATC 57.871 45.455 0.00 0.00 0.00 2.92
3964 4153 4.847198 TGTGTCTAGTGCCATTCATCAAT 58.153 39.130 0.00 0.00 0.00 2.57
3965 4154 5.255687 TGTGTCTAGTGCCATTCATCAATT 58.744 37.500 0.00 0.00 0.00 2.32
3966 4155 6.413892 TGTGTCTAGTGCCATTCATCAATTA 58.586 36.000 0.00 0.00 0.00 1.40
3967 4156 6.883756 TGTGTCTAGTGCCATTCATCAATTAA 59.116 34.615 0.00 0.00 0.00 1.40
3969 4158 8.243426 GTGTCTAGTGCCATTCATCAATTAAAA 58.757 33.333 0.00 0.00 0.00 1.52
3970 4159 8.461222 TGTCTAGTGCCATTCATCAATTAAAAG 58.539 33.333 0.00 0.00 0.00 2.27
3971 4160 7.917505 GTCTAGTGCCATTCATCAATTAAAAGG 59.082 37.037 0.00 0.00 0.00 3.11
3972 4161 5.981174 AGTGCCATTCATCAATTAAAAGGG 58.019 37.500 0.00 0.00 0.00 3.95
4001 4190 9.747898 ATTGGTATTTTCCATACTTTGTCAGTA 57.252 29.630 0.00 0.00 42.49 2.74
4005 4194 8.947115 GTATTTTCCATACTTTGTCAGTAGCTT 58.053 33.333 0.00 0.00 41.54 3.74
4017 4206 0.545309 AGTAGCTTGAGGCCCTGTGA 60.545 55.000 0.00 0.00 43.05 3.58
4033 4222 4.398319 CCTGTGACCTGTTTATTTCCTGT 58.602 43.478 0.00 0.00 0.00 4.00
4053 4242 7.338710 TCCTGTAGAATATTTTCACTTCCAGG 58.661 38.462 0.00 0.00 33.82 4.45
4088 4277 2.453983 TGCTTAAACCAATTGCAGCC 57.546 45.000 0.00 0.00 30.99 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.956477 CAACCTACCCATGCCTAATGC 59.044 52.381 0.00 0.00 41.77 3.56
7 8 3.297134 ACAACCTACCCATGCCTAATG 57.703 47.619 0.00 0.00 35.89 1.90
8 9 4.724798 TCTAACAACCTACCCATGCCTAAT 59.275 41.667 0.00 0.00 0.00 1.73
9 10 4.105577 TCTAACAACCTACCCATGCCTAA 58.894 43.478 0.00 0.00 0.00 2.69
11 12 2.505819 CTCTAACAACCTACCCATGCCT 59.494 50.000 0.00 0.00 0.00 4.75
12 13 2.504175 TCTCTAACAACCTACCCATGCC 59.496 50.000 0.00 0.00 0.00 4.40
13 14 3.197983 AGTCTCTAACAACCTACCCATGC 59.802 47.826 0.00 0.00 0.00 4.06
14 15 5.178797 CAAGTCTCTAACAACCTACCCATG 58.821 45.833 0.00 0.00 0.00 3.66
15 16 4.844655 ACAAGTCTCTAACAACCTACCCAT 59.155 41.667 0.00 0.00 0.00 4.00
16 17 4.039973 CACAAGTCTCTAACAACCTACCCA 59.960 45.833 0.00 0.00 0.00 4.51
17 18 4.282703 TCACAAGTCTCTAACAACCTACCC 59.717 45.833 0.00 0.00 0.00 3.69
18 19 5.464030 TCACAAGTCTCTAACAACCTACC 57.536 43.478 0.00 0.00 0.00 3.18
19 20 9.654663 AATAATCACAAGTCTCTAACAACCTAC 57.345 33.333 0.00 0.00 0.00 3.18
20 21 9.871238 GAATAATCACAAGTCTCTAACAACCTA 57.129 33.333 0.00 0.00 0.00 3.08
21 22 8.598041 AGAATAATCACAAGTCTCTAACAACCT 58.402 33.333 0.00 0.00 0.00 3.50
22 23 8.779354 AGAATAATCACAAGTCTCTAACAACC 57.221 34.615 0.00 0.00 0.00 3.77
29 30 9.868277 CTGTAGAAAGAATAATCACAAGTCTCT 57.132 33.333 0.00 0.00 0.00 3.10
30 31 9.646427 ACTGTAGAAAGAATAATCACAAGTCTC 57.354 33.333 0.00 0.00 0.00 3.36
69 70 9.701098 TCAGTTTACGACAATACTGATTAAACT 57.299 29.630 0.00 0.00 41.34 2.66
77 78 5.004440 CCGACATCAGTTTACGACAATACTG 59.996 44.000 0.00 0.00 39.41 2.74
78 79 5.100259 CCGACATCAGTTTACGACAATACT 58.900 41.667 0.00 0.00 0.00 2.12
79 80 4.860907 ACCGACATCAGTTTACGACAATAC 59.139 41.667 0.00 0.00 0.00 1.89
80 81 5.063180 ACCGACATCAGTTTACGACAATA 57.937 39.130 0.00 0.00 0.00 1.90
81 82 3.921677 ACCGACATCAGTTTACGACAAT 58.078 40.909 0.00 0.00 0.00 2.71
82 83 3.374220 ACCGACATCAGTTTACGACAA 57.626 42.857 0.00 0.00 0.00 3.18
83 84 3.374220 AACCGACATCAGTTTACGACA 57.626 42.857 0.00 0.00 0.00 4.35
84 85 4.266976 CCATAACCGACATCAGTTTACGAC 59.733 45.833 0.00 0.00 0.00 4.34
85 86 4.426416 CCATAACCGACATCAGTTTACGA 58.574 43.478 0.00 0.00 0.00 3.43
86 87 3.554324 CCCATAACCGACATCAGTTTACG 59.446 47.826 0.00 0.00 0.00 3.18
87 88 3.311596 GCCCATAACCGACATCAGTTTAC 59.688 47.826 0.00 0.00 0.00 2.01
88 89 3.055021 TGCCCATAACCGACATCAGTTTA 60.055 43.478 0.00 0.00 0.00 2.01
89 90 2.290641 TGCCCATAACCGACATCAGTTT 60.291 45.455 0.00 0.00 0.00 2.66
90 91 1.280710 TGCCCATAACCGACATCAGTT 59.719 47.619 0.00 0.00 0.00 3.16
91 92 0.908910 TGCCCATAACCGACATCAGT 59.091 50.000 0.00 0.00 0.00 3.41
92 93 1.875514 CATGCCCATAACCGACATCAG 59.124 52.381 0.00 0.00 0.00 2.90
93 94 1.476652 CCATGCCCATAACCGACATCA 60.477 52.381 0.00 0.00 0.00 3.07
94 95 1.238439 CCATGCCCATAACCGACATC 58.762 55.000 0.00 0.00 0.00 3.06
95 96 0.550914 ACCATGCCCATAACCGACAT 59.449 50.000 0.00 0.00 0.00 3.06
96 97 0.107410 GACCATGCCCATAACCGACA 60.107 55.000 0.00 0.00 0.00 4.35
97 98 0.180406 AGACCATGCCCATAACCGAC 59.820 55.000 0.00 0.00 0.00 4.79
98 99 1.414919 GTAGACCATGCCCATAACCGA 59.585 52.381 0.00 0.00 0.00 4.69
99 100 1.542547 GGTAGACCATGCCCATAACCG 60.543 57.143 0.00 0.00 35.64 4.44
100 101 2.271944 GGTAGACCATGCCCATAACC 57.728 55.000 0.00 0.00 35.64 2.85
129 130 0.871722 CCCTCATCGAAACAACGCAA 59.128 50.000 0.00 0.00 0.00 4.85
130 131 0.953471 CCCCTCATCGAAACAACGCA 60.953 55.000 0.00 0.00 0.00 5.24
131 132 0.953960 ACCCCTCATCGAAACAACGC 60.954 55.000 0.00 0.00 0.00 4.84
132 133 1.463444 GAACCCCTCATCGAAACAACG 59.537 52.381 0.00 0.00 0.00 4.10
133 134 2.500229 TGAACCCCTCATCGAAACAAC 58.500 47.619 0.00 0.00 0.00 3.32
134 135 2.882137 GTTGAACCCCTCATCGAAACAA 59.118 45.455 0.00 0.00 32.78 2.83
135 136 2.500229 GTTGAACCCCTCATCGAAACA 58.500 47.619 0.00 0.00 32.78 2.83
136 137 1.810755 GGTTGAACCCCTCATCGAAAC 59.189 52.381 2.08 0.00 32.78 2.78
137 138 2.194201 GGTTGAACCCCTCATCGAAA 57.806 50.000 2.08 0.00 32.78 3.46
138 139 3.948735 GGTTGAACCCCTCATCGAA 57.051 52.632 2.08 0.00 32.78 3.71
148 149 2.307686 TCTAACATGAGGGGGTTGAACC 59.692 50.000 5.62 5.62 37.60 3.62
149 150 3.713826 TCTAACATGAGGGGGTTGAAC 57.286 47.619 0.00 0.00 0.00 3.18
150 151 5.036916 ACTATCTAACATGAGGGGGTTGAA 58.963 41.667 0.00 0.00 0.00 2.69
151 152 4.408921 CACTATCTAACATGAGGGGGTTGA 59.591 45.833 0.00 0.00 0.00 3.18
152 153 4.164221 ACACTATCTAACATGAGGGGGTTG 59.836 45.833 0.00 0.00 0.00 3.77
153 154 4.371681 ACACTATCTAACATGAGGGGGTT 58.628 43.478 0.00 0.00 0.00 4.11
154 155 4.008916 ACACTATCTAACATGAGGGGGT 57.991 45.455 0.00 0.00 0.00 4.95
155 156 5.046304 CCATACACTATCTAACATGAGGGGG 60.046 48.000 0.00 0.00 0.00 5.40
156 157 5.046304 CCCATACACTATCTAACATGAGGGG 60.046 48.000 0.00 0.00 0.00 4.79
157 158 5.046304 CCCCATACACTATCTAACATGAGGG 60.046 48.000 0.00 0.00 0.00 4.30
158 159 5.569630 GCCCCATACACTATCTAACATGAGG 60.570 48.000 0.00 0.00 0.00 3.86
159 160 5.482908 GCCCCATACACTATCTAACATGAG 58.517 45.833 0.00 0.00 0.00 2.90
160 161 4.286032 GGCCCCATACACTATCTAACATGA 59.714 45.833 0.00 0.00 0.00 3.07
161 162 4.041567 TGGCCCCATACACTATCTAACATG 59.958 45.833 0.00 0.00 0.00 3.21
162 163 4.239495 TGGCCCCATACACTATCTAACAT 58.761 43.478 0.00 0.00 0.00 2.71
163 164 3.659841 TGGCCCCATACACTATCTAACA 58.340 45.455 0.00 0.00 0.00 2.41
164 165 4.565652 CCATGGCCCCATACACTATCTAAC 60.566 50.000 0.00 0.00 34.91 2.34
165 166 3.587061 CCATGGCCCCATACACTATCTAA 59.413 47.826 0.00 0.00 34.91 2.10
166 167 3.181329 CCATGGCCCCATACACTATCTA 58.819 50.000 0.00 0.00 34.91 1.98
167 168 1.988107 CCATGGCCCCATACACTATCT 59.012 52.381 0.00 0.00 34.91 1.98
168 169 1.004745 CCCATGGCCCCATACACTATC 59.995 57.143 6.09 0.00 34.91 2.08
169 170 1.075601 CCCATGGCCCCATACACTAT 58.924 55.000 6.09 0.00 34.91 2.12
170 171 0.029577 TCCCATGGCCCCATACACTA 60.030 55.000 6.09 0.00 34.91 2.74
171 172 0.702356 ATCCCATGGCCCCATACACT 60.702 55.000 6.09 0.00 34.91 3.55
172 173 0.540365 CATCCCATGGCCCCATACAC 60.540 60.000 6.09 0.00 34.91 2.90
173 174 0.998398 ACATCCCATGGCCCCATACA 60.998 55.000 6.09 0.00 34.91 2.29
174 175 0.251341 GACATCCCATGGCCCCATAC 60.251 60.000 6.09 0.00 34.91 2.39
175 176 1.778017 CGACATCCCATGGCCCCATA 61.778 60.000 6.09 0.00 33.66 2.74
176 177 2.937650 GACATCCCATGGCCCCAT 59.062 61.111 6.09 0.00 37.08 4.00
177 178 3.807839 CGACATCCCATGGCCCCA 61.808 66.667 6.09 0.00 33.66 4.96
178 179 3.809013 ACGACATCCCATGGCCCC 61.809 66.667 6.09 0.00 33.66 5.80
179 180 2.516930 CACGACATCCCATGGCCC 60.517 66.667 6.09 0.00 33.66 5.80
180 181 3.211963 GCACGACATCCCATGGCC 61.212 66.667 6.09 0.00 33.66 5.36
181 182 2.438254 TGCACGACATCCCATGGC 60.438 61.111 6.09 0.00 33.97 4.40
182 183 0.959867 TTGTGCACGACATCCCATGG 60.960 55.000 13.13 4.14 33.40 3.66
183 184 0.880441 TTTGTGCACGACATCCCATG 59.120 50.000 13.13 0.00 33.40 3.66
184 185 1.167851 CTTTGTGCACGACATCCCAT 58.832 50.000 13.13 0.00 33.40 4.00
185 186 1.514678 GCTTTGTGCACGACATCCCA 61.515 55.000 13.13 0.00 42.31 4.37
186 187 1.210155 GCTTTGTGCACGACATCCC 59.790 57.895 13.13 0.00 42.31 3.85
187 188 4.847255 GCTTTGTGCACGACATCC 57.153 55.556 13.13 0.00 42.31 3.51
196 197 3.591196 TCATTATTGGGTGCTTTGTGC 57.409 42.857 0.00 0.00 43.25 4.57
197 198 5.138125 AGTTCATTATTGGGTGCTTTGTG 57.862 39.130 0.00 0.00 0.00 3.33
198 199 5.806654 AAGTTCATTATTGGGTGCTTTGT 57.193 34.783 0.00 0.00 0.00 2.83
199 200 8.776376 AATTAAGTTCATTATTGGGTGCTTTG 57.224 30.769 0.00 0.00 0.00 2.77
222 223 9.086336 GCACACAAAACACATAAGCATATTAAT 57.914 29.630 0.00 0.00 0.00 1.40
223 224 8.084684 TGCACACAAAACACATAAGCATATTAA 58.915 29.630 0.00 0.00 0.00 1.40
224 225 7.597386 TGCACACAAAACACATAAGCATATTA 58.403 30.769 0.00 0.00 0.00 0.98
225 226 6.453943 TGCACACAAAACACATAAGCATATT 58.546 32.000 0.00 0.00 0.00 1.28
226 227 6.023357 TGCACACAAAACACATAAGCATAT 57.977 33.333 0.00 0.00 0.00 1.78
227 228 5.444663 TGCACACAAAACACATAAGCATA 57.555 34.783 0.00 0.00 0.00 3.14
228 229 4.319139 TGCACACAAAACACATAAGCAT 57.681 36.364 0.00 0.00 0.00 3.79
229 230 3.790152 TGCACACAAAACACATAAGCA 57.210 38.095 0.00 0.00 0.00 3.91
230 231 4.050553 ACATGCACACAAAACACATAAGC 58.949 39.130 0.00 0.00 0.00 3.09
231 232 5.519566 ACAACATGCACACAAAACACATAAG 59.480 36.000 0.00 0.00 0.00 1.73
232 233 5.414360 ACAACATGCACACAAAACACATAA 58.586 33.333 0.00 0.00 0.00 1.90
233 234 5.003692 ACAACATGCACACAAAACACATA 57.996 34.783 0.00 0.00 0.00 2.29
234 235 3.859443 ACAACATGCACACAAAACACAT 58.141 36.364 0.00 0.00 0.00 3.21
235 236 3.309961 ACAACATGCACACAAAACACA 57.690 38.095 0.00 0.00 0.00 3.72
236 237 4.862018 ACTAACAACATGCACACAAAACAC 59.138 37.500 0.00 0.00 0.00 3.32
237 238 4.861462 CACTAACAACATGCACACAAAACA 59.139 37.500 0.00 0.00 0.00 2.83
238 239 4.259770 GCACTAACAACATGCACACAAAAC 60.260 41.667 0.00 0.00 39.23 2.43
239 240 3.862267 GCACTAACAACATGCACACAAAA 59.138 39.130 0.00 0.00 39.23 2.44
240 241 3.130164 AGCACTAACAACATGCACACAAA 59.870 39.130 0.00 0.00 41.97 2.83
241 242 2.687425 AGCACTAACAACATGCACACAA 59.313 40.909 0.00 0.00 41.97 3.33
242 243 2.296792 AGCACTAACAACATGCACACA 58.703 42.857 0.00 0.00 41.97 3.72
243 244 3.354089 AAGCACTAACAACATGCACAC 57.646 42.857 0.00 0.00 41.97 3.82
244 245 4.111198 CAAAAGCACTAACAACATGCACA 58.889 39.130 0.00 0.00 41.97 4.57
245 246 4.358851 TCAAAAGCACTAACAACATGCAC 58.641 39.130 0.00 0.00 41.97 4.57
246 247 4.645762 TCAAAAGCACTAACAACATGCA 57.354 36.364 0.00 0.00 41.97 3.96
247 248 5.964887 TTTCAAAAGCACTAACAACATGC 57.035 34.783 0.00 0.00 39.74 4.06
248 249 7.697352 TCATTTCAAAAGCACTAACAACATG 57.303 32.000 0.00 0.00 0.00 3.21
249 250 7.326789 CGATCATTTCAAAAGCACTAACAACAT 59.673 33.333 0.00 0.00 0.00 2.71
250 251 6.636447 CGATCATTTCAAAAGCACTAACAACA 59.364 34.615 0.00 0.00 0.00 3.33
251 252 6.636850 ACGATCATTTCAAAAGCACTAACAAC 59.363 34.615 0.00 0.00 0.00 3.32
252 253 6.636447 CACGATCATTTCAAAAGCACTAACAA 59.364 34.615 0.00 0.00 0.00 2.83
253 254 6.142139 CACGATCATTTCAAAAGCACTAACA 58.858 36.000 0.00 0.00 0.00 2.41
254 255 5.059710 GCACGATCATTTCAAAAGCACTAAC 59.940 40.000 0.00 0.00 0.00 2.34
255 256 5.153513 GCACGATCATTTCAAAAGCACTAA 58.846 37.500 0.00 0.00 0.00 2.24
256 257 4.668941 CGCACGATCATTTCAAAAGCACTA 60.669 41.667 0.00 0.00 0.00 2.74
257 258 3.568538 GCACGATCATTTCAAAAGCACT 58.431 40.909 0.00 0.00 0.00 4.40
258 259 2.339400 CGCACGATCATTTCAAAAGCAC 59.661 45.455 0.00 0.00 0.00 4.40
259 260 2.031245 ACGCACGATCATTTCAAAAGCA 60.031 40.909 0.00 0.00 0.00 3.91
260 261 2.339400 CACGCACGATCATTTCAAAAGC 59.661 45.455 0.00 0.00 0.00 3.51
261 262 3.809234 TCACGCACGATCATTTCAAAAG 58.191 40.909 0.00 0.00 0.00 2.27
262 263 3.887339 TCACGCACGATCATTTCAAAA 57.113 38.095 0.00 0.00 0.00 2.44
263 264 3.746089 CATCACGCACGATCATTTCAAA 58.254 40.909 0.00 0.00 0.00 2.69
264 265 2.476018 GCATCACGCACGATCATTTCAA 60.476 45.455 0.00 0.00 41.79 2.69
265 266 1.062440 GCATCACGCACGATCATTTCA 59.938 47.619 0.00 0.00 41.79 2.69
266 267 1.734885 GCATCACGCACGATCATTTC 58.265 50.000 0.00 0.00 41.79 2.17
267 268 3.903876 GCATCACGCACGATCATTT 57.096 47.368 0.00 0.00 41.79 2.32
277 278 4.633126 ACATTATCATCCTATGCATCACGC 59.367 41.667 0.19 0.00 42.89 5.34
278 279 6.148315 ACAACATTATCATCCTATGCATCACG 59.852 38.462 0.19 0.00 0.00 4.35
279 280 7.173735 TGACAACATTATCATCCTATGCATCAC 59.826 37.037 0.19 0.00 0.00 3.06
280 281 7.225725 TGACAACATTATCATCCTATGCATCA 58.774 34.615 0.19 0.00 0.00 3.07
281 282 7.677454 TGACAACATTATCATCCTATGCATC 57.323 36.000 0.19 0.00 0.00 3.91
282 283 7.668469 ACATGACAACATTATCATCCTATGCAT 59.332 33.333 3.79 3.79 33.18 3.96
283 284 6.999871 ACATGACAACATTATCATCCTATGCA 59.000 34.615 0.00 0.00 33.18 3.96
284 285 7.444629 ACATGACAACATTATCATCCTATGC 57.555 36.000 0.00 0.00 33.18 3.14
298 299 7.417612 GCTCTTCTCTTTTAAACATGACAACA 58.582 34.615 0.00 0.00 0.00 3.33
300 301 6.293407 CCGCTCTTCTCTTTTAAACATGACAA 60.293 38.462 0.00 0.00 0.00 3.18
301 302 5.179368 CCGCTCTTCTCTTTTAAACATGACA 59.821 40.000 0.00 0.00 0.00 3.58
302 303 5.408604 TCCGCTCTTCTCTTTTAAACATGAC 59.591 40.000 0.00 0.00 0.00 3.06
310 311 3.576982 TCCTGTTCCGCTCTTCTCTTTTA 59.423 43.478 0.00 0.00 0.00 1.52
316 317 1.694696 ACTTTCCTGTTCCGCTCTTCT 59.305 47.619 0.00 0.00 0.00 2.85
319 320 1.884235 CAACTTTCCTGTTCCGCTCT 58.116 50.000 0.00 0.00 0.00 4.09
324 325 4.546570 GTTATGTGCAACTTTCCTGTTCC 58.453 43.478 0.00 0.00 38.04 3.62
325 326 4.037446 TGGTTATGTGCAACTTTCCTGTTC 59.963 41.667 0.00 0.00 38.04 3.18
328 329 4.582701 TTGGTTATGTGCAACTTTCCTG 57.417 40.909 0.00 0.00 38.04 3.86
331 332 7.598493 ACATGTATTTGGTTATGTGCAACTTTC 59.402 33.333 0.00 0.00 38.04 2.62
333 334 6.867816 CACATGTATTTGGTTATGTGCAACTT 59.132 34.615 0.00 0.00 42.43 2.66
334 335 6.389091 CACATGTATTTGGTTATGTGCAACT 58.611 36.000 0.00 0.00 42.43 3.16
335 336 6.630676 CACATGTATTTGGTTATGTGCAAC 57.369 37.500 0.00 0.00 42.43 4.17
351 352 3.191162 GGAGCAGATGCAAAACACATGTA 59.809 43.478 7.68 0.00 45.16 2.29
354 355 1.547372 GGGAGCAGATGCAAAACACAT 59.453 47.619 7.68 0.00 45.16 3.21
356 357 0.244721 GGGGAGCAGATGCAAAACAC 59.755 55.000 7.68 0.00 45.16 3.32
363 364 0.323725 TTTTCAGGGGGAGCAGATGC 60.324 55.000 0.00 0.00 42.49 3.91
367 368 2.806945 TGTATTTTCAGGGGGAGCAG 57.193 50.000 0.00 0.00 0.00 4.24
373 374 3.490348 CCTGCCTATGTATTTTCAGGGG 58.510 50.000 0.00 0.00 37.89 4.79
378 379 3.555966 ACCTGCCTGCCTATGTATTTTC 58.444 45.455 0.00 0.00 0.00 2.29
382 383 2.372172 GGTTACCTGCCTGCCTATGTAT 59.628 50.000 0.00 0.00 0.00 2.29
383 384 1.766496 GGTTACCTGCCTGCCTATGTA 59.234 52.381 0.00 0.00 0.00 2.29
413 414 4.959723 TGCATCGATGGTCATTTCTATGA 58.040 39.130 26.00 0.00 38.45 2.15
418 419 5.237127 TCTGTATTGCATCGATGGTCATTTC 59.763 40.000 26.00 8.59 0.00 2.17
425 426 2.837498 TGGTCTGTATTGCATCGATGG 58.163 47.619 26.00 8.26 0.00 3.51
433 434 3.629398 CCTCCTTTGATGGTCTGTATTGC 59.371 47.826 0.00 0.00 0.00 3.56
434 435 4.637534 CACCTCCTTTGATGGTCTGTATTG 59.362 45.833 0.00 0.00 30.72 1.90
435 436 4.848357 CACCTCCTTTGATGGTCTGTATT 58.152 43.478 0.00 0.00 30.72 1.89
442 443 1.004044 CTCTGCACCTCCTTTGATGGT 59.996 52.381 0.00 0.00 33.87 3.55
444 445 1.093159 GCTCTGCACCTCCTTTGATG 58.907 55.000 0.00 0.00 0.00 3.07
451 452 2.827642 GCCATGCTCTGCACCTCC 60.828 66.667 0.00 0.00 43.04 4.30
458 459 4.237445 CCTCAAGGCCATGCTCTG 57.763 61.111 5.01 0.00 0.00 3.35
468 469 4.821805 TGACTAAGAAAAACAGCCTCAAGG 59.178 41.667 0.00 0.00 38.53 3.61
469 470 5.049129 CCTGACTAAGAAAAACAGCCTCAAG 60.049 44.000 0.00 0.00 0.00 3.02
470 471 4.821805 CCTGACTAAGAAAAACAGCCTCAA 59.178 41.667 0.00 0.00 0.00 3.02
471 472 4.389374 CCTGACTAAGAAAAACAGCCTCA 58.611 43.478 0.00 0.00 0.00 3.86
473 474 3.149981 GCCTGACTAAGAAAAACAGCCT 58.850 45.455 0.00 0.00 0.00 4.58
474 475 3.057946 CAGCCTGACTAAGAAAAACAGCC 60.058 47.826 0.00 0.00 0.00 4.85
475 476 3.815401 TCAGCCTGACTAAGAAAAACAGC 59.185 43.478 0.00 0.00 0.00 4.40
476 477 5.278022 GGTTCAGCCTGACTAAGAAAAACAG 60.278 44.000 0.00 0.00 0.00 3.16
478 479 4.319549 CGGTTCAGCCTGACTAAGAAAAAC 60.320 45.833 0.00 0.00 34.25 2.43
484 485 0.895530 TCCGGTTCAGCCTGACTAAG 59.104 55.000 0.00 0.00 34.25 2.18
491 492 0.325296 TCTATGGTCCGGTTCAGCCT 60.325 55.000 0.00 0.00 34.25 4.58
503 504 7.719871 ATTCTAGGCGTAATGTATCTATGGT 57.280 36.000 0.00 0.00 0.00 3.55
529 531 1.257675 GTTTGTTTGGTTGCGTGCATC 59.742 47.619 0.00 0.00 0.00 3.91
535 537 2.873133 TAAGGGTTTGTTTGGTTGCG 57.127 45.000 0.00 0.00 0.00 4.85
545 547 8.446599 TCACTTTAGAAAGTCTTAAGGGTTTG 57.553 34.615 4.66 0.00 45.65 2.93
549 551 6.094186 GCCATCACTTTAGAAAGTCTTAAGGG 59.906 42.308 4.66 4.85 45.65 3.95
550 552 6.094186 GGCCATCACTTTAGAAAGTCTTAAGG 59.906 42.308 4.66 4.95 45.65 2.69
571 575 1.497286 ACTGTTGGTTAGGAAAGGCCA 59.503 47.619 5.01 0.00 40.02 5.36
573 577 3.746940 TGTACTGTTGGTTAGGAAAGGC 58.253 45.455 0.00 0.00 0.00 4.35
575 579 7.876068 TGAGTAATGTACTGTTGGTTAGGAAAG 59.124 37.037 0.00 0.00 39.59 2.62
583 587 4.222145 ACGGATGAGTAATGTACTGTTGGT 59.778 41.667 0.00 0.00 39.59 3.67
590 594 8.298140 AGCTAATCTTACGGATGAGTAATGTAC 58.702 37.037 0.00 0.00 35.72 2.90
591 595 8.405418 AGCTAATCTTACGGATGAGTAATGTA 57.595 34.615 0.00 0.00 35.72 2.29
595 599 8.133627 GTGTTAGCTAATCTTACGGATGAGTAA 58.866 37.037 9.88 0.00 35.72 2.24
604 608 9.130312 GATTATGGAGTGTTAGCTAATCTTACG 57.870 37.037 9.88 0.00 0.00 3.18
614 618 6.658188 AGTCCTAGATTATGGAGTGTTAGC 57.342 41.667 0.00 0.00 34.94 3.09
619 623 6.095432 CTCCAAGTCCTAGATTATGGAGTG 57.905 45.833 18.74 4.17 45.62 3.51
624 628 4.592485 ACGCTCCAAGTCCTAGATTATG 57.408 45.455 0.00 0.00 0.00 1.90
625 629 4.649674 TCAACGCTCCAAGTCCTAGATTAT 59.350 41.667 0.00 0.00 0.00 1.28
629 635 1.919240 TCAACGCTCCAAGTCCTAGA 58.081 50.000 0.00 0.00 0.00 2.43
710 716 9.140286 GCAAGTTCAAAAGGTTTTCTATATTCC 57.860 33.333 0.00 0.00 0.00 3.01
711 717 9.140286 GGCAAGTTCAAAAGGTTTTCTATATTC 57.860 33.333 0.00 0.00 0.00 1.75
720 727 2.192263 TGGGGCAAGTTCAAAAGGTTT 58.808 42.857 0.00 0.00 0.00 3.27
723 730 2.038659 TCTTGGGGCAAGTTCAAAAGG 58.961 47.619 0.00 0.00 41.66 3.11
725 732 4.769345 ATTTCTTGGGGCAAGTTCAAAA 57.231 36.364 0.00 0.00 41.66 2.44
729 736 4.335400 TGAAATTTCTTGGGGCAAGTTC 57.665 40.909 18.64 0.00 41.66 3.01
738 745 5.726397 TGCAATCCTCATGAAATTTCTTGG 58.274 37.500 25.47 18.29 34.27 3.61
769 779 2.961522 TTCTGCGGTTCGTTTGATTC 57.038 45.000 0.00 0.00 0.00 2.52
809 819 9.061435 GTAATTTTCAGAGGATATTTCAGAGGG 57.939 37.037 0.00 0.00 0.00 4.30
825 835 7.216494 ACCCATTGGTTCAAAGTAATTTTCAG 58.784 34.615 1.20 0.00 44.75 3.02
900 910 1.622725 GGATGGGGTCTCCTGTACAGT 60.623 57.143 21.18 0.00 36.20 3.55
901 911 1.123928 GGATGGGGTCTCCTGTACAG 58.876 60.000 16.34 16.34 36.20 2.74
902 912 0.326238 GGGATGGGGTCTCCTGTACA 60.326 60.000 0.00 0.00 36.20 2.90
956 966 1.621992 ACGAGCAGTGAGGAGAAGAA 58.378 50.000 0.00 0.00 0.00 2.52
979 989 1.142748 GGACTGGATGAGACTGCGG 59.857 63.158 0.00 0.00 0.00 5.69
1101 1112 4.465446 CTGAGGGCGGAGGAGGGA 62.465 72.222 0.00 0.00 0.00 4.20
1529 1573 3.660111 GTCAGTGGGCACGGCAAC 61.660 66.667 0.00 0.00 36.20 4.17
1600 1644 6.403309 GCATGGTGATGAGCTTGATGTATATG 60.403 42.308 1.50 0.00 0.00 1.78
1850 1894 2.738846 CCTTCACCTTGTCGAAGTCATG 59.261 50.000 0.00 0.00 37.52 3.07
1909 1953 5.467705 AGAGTGTTATAAGTCACGGTGTTC 58.532 41.667 8.17 3.26 39.25 3.18
2032 2077 6.215845 ACAAAACAGTTTGCAGGACATATTC 58.784 36.000 0.00 0.00 46.84 1.75
2039 2084 6.214191 TGATTAACAAAACAGTTTGCAGGA 57.786 33.333 0.00 0.00 46.84 3.86
2041 2086 7.436080 ACTGATGATTAACAAAACAGTTTGCAG 59.564 33.333 0.00 0.00 46.84 4.41
2044 2089 9.467258 ATCACTGATGATTAACAAAACAGTTTG 57.533 29.630 0.00 0.00 43.40 2.93
2045 2090 9.467258 CATCACTGATGATTAACAAAACAGTTT 57.533 29.630 13.06 0.00 43.40 2.66
2050 2095 7.086376 AGTGCATCACTGATGATTAACAAAAC 58.914 34.615 21.20 1.95 43.40 2.43
2051 2096 7.218228 AGTGCATCACTGATGATTAACAAAA 57.782 32.000 21.20 0.00 43.40 2.44
2052 2097 6.822667 AGTGCATCACTGATGATTAACAAA 57.177 33.333 21.20 0.00 43.40 2.83
2053 2098 7.330262 TCTAGTGCATCACTGATGATTAACAA 58.670 34.615 21.20 0.00 43.40 2.83
2056 2101 7.729116 TGATCTAGTGCATCACTGATGATTAA 58.271 34.615 21.20 4.32 43.40 1.40
2061 2106 4.930405 GGATGATCTAGTGCATCACTGATG 59.070 45.833 20.87 13.90 45.01 3.07
2098 2144 1.098050 GACCCAACTGCCAAGCATAG 58.902 55.000 0.00 0.00 38.13 2.23
2106 2152 1.227853 AAGACGTGACCCAACTGCC 60.228 57.895 0.00 0.00 0.00 4.85
2172 2218 9.810545 CAACAATAAACTTGGTTTTCCTAAAGA 57.189 29.630 0.99 0.00 41.38 2.52
2209 2255 4.152223 CGAATTTGGAAAACCAGGAAATGC 59.848 41.667 0.00 0.00 0.00 3.56
2218 2264 5.583061 AGGAAAAACACGAATTTGGAAAACC 59.417 36.000 0.00 0.00 0.00 3.27
2232 2278 4.979815 CGGAAAACATACCAGGAAAAACAC 59.020 41.667 0.00 0.00 0.00 3.32
2275 2321 7.388500 ACCTTAAATGCAAATGATGAAACCTTG 59.612 33.333 0.00 0.00 0.00 3.61
2276 2322 7.452562 ACCTTAAATGCAAATGATGAAACCTT 58.547 30.769 0.00 0.00 0.00 3.50
2293 2339 5.574188 ACTCCATCTCAGCAAACCTTAAAT 58.426 37.500 0.00 0.00 0.00 1.40
2504 2550 6.899089 TGCTCCCATCTTCTCATACATTTTA 58.101 36.000 0.00 0.00 0.00 1.52
2561 2607 5.168569 ACGTTGTATGTGACTATTGTCCAG 58.831 41.667 4.82 0.00 42.28 3.86
2753 2799 5.281727 TCCAACGTGATATCTGAATTCTCG 58.718 41.667 7.05 10.90 33.84 4.04
3074 3223 3.119495 GGCAAACCGAGTGATGCTTTTAT 60.119 43.478 11.80 0.00 38.79 1.40
3108 3257 7.495279 GTCAAAGAGAAGAATATGACTGATGCT 59.505 37.037 0.00 0.00 35.49 3.79
3134 3283 2.484264 CACAAGTTTCTCCTTAAGGGCG 59.516 50.000 21.53 12.76 35.41 6.13
3174 3325 0.036010 CCTCTGAATTGCCACCGACT 60.036 55.000 0.00 0.00 0.00 4.18
3346 3497 3.829026 GGGCTTCAAATTCCTCTCTTGTT 59.171 43.478 0.00 0.00 0.00 2.83
3411 3562 0.833949 TGTCACCAGCACACCACTAA 59.166 50.000 0.00 0.00 0.00 2.24
3575 3731 7.182060 TCAACTAGCCCATTTCCTAGAAATTT 58.818 34.615 0.00 0.00 35.96 1.82
3581 3737 5.440610 ACAATCAACTAGCCCATTTCCTAG 58.559 41.667 0.00 0.00 37.61 3.02
3591 3747 6.806739 GTGAAATACCAAACAATCAACTAGCC 59.193 38.462 0.00 0.00 0.00 3.93
3592 3748 7.796958 GTGAAATACCAAACAATCAACTAGC 57.203 36.000 0.00 0.00 0.00 3.42
3611 3767 6.545666 AGTGATGTCAACAATGTTAGGTGAAA 59.454 34.615 0.00 0.00 0.00 2.69
3774 3935 2.860735 CGGACGGCAATTCAAACAAAAA 59.139 40.909 0.00 0.00 0.00 1.94
3775 3936 2.099263 TCGGACGGCAATTCAAACAAAA 59.901 40.909 0.00 0.00 0.00 2.44
3783 3944 0.808755 AAATGGTCGGACGGCAATTC 59.191 50.000 0.00 0.00 0.00 2.17
3858 4046 9.815306 AGGATATCTACAATTAACTCAGAGCTA 57.185 33.333 2.05 0.00 0.00 3.32
3954 4143 8.485392 ACCAATACCCCTTTTAATTGATGAATG 58.515 33.333 0.00 0.00 32.29 2.67
3957 4146 9.722317 AATACCAATACCCCTTTTAATTGATGA 57.278 29.630 0.00 0.00 32.29 2.92
3961 4150 9.607988 GGAAAATACCAATACCCCTTTTAATTG 57.392 33.333 0.00 0.00 0.00 2.32
3964 4153 8.919018 ATGGAAAATACCAATACCCCTTTTAA 57.081 30.769 0.00 0.00 43.47 1.52
3965 4154 9.423964 GTATGGAAAATACCAATACCCCTTTTA 57.576 33.333 0.00 0.00 43.47 1.52
3966 4155 8.126385 AGTATGGAAAATACCAATACCCCTTTT 58.874 33.333 0.00 0.00 43.47 2.27
3967 4156 7.658260 AGTATGGAAAATACCAATACCCCTTT 58.342 34.615 0.00 0.00 43.47 3.11
3969 4158 6.858792 AGTATGGAAAATACCAATACCCCT 57.141 37.500 0.00 0.00 43.47 4.79
3970 4159 7.343574 ACAAAGTATGGAAAATACCAATACCCC 59.656 37.037 0.00 0.00 43.47 4.95
3971 4160 8.301252 ACAAAGTATGGAAAATACCAATACCC 57.699 34.615 0.00 0.00 43.47 3.69
3972 4161 8.962679 TGACAAAGTATGGAAAATACCAATACC 58.037 33.333 0.00 0.00 43.47 2.73
4001 4190 2.753029 GTCACAGGGCCTCAAGCT 59.247 61.111 0.95 0.00 43.05 3.74
4005 4194 1.352622 AAACAGGTCACAGGGCCTCA 61.353 55.000 0.95 0.00 31.73 3.86
4033 4222 6.547141 CCATGCCTGGAAGTGAAAATATTCTA 59.453 38.462 0.97 0.00 46.37 2.10
4074 4263 1.665442 GGACGGCTGCAATTGGTTT 59.335 52.632 7.72 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.