Multiple sequence alignment - TraesCS7B01G033700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G033700 chr7B 100.000 2774 0 0 1 2774 33530247 33527474 0.000000e+00 5123.0
1 TraesCS7B01G033700 chr7B 82.765 557 57 18 983 1538 33415301 33414783 7.000000e-126 460.0
2 TraesCS7B01G033700 chr7B 82.090 402 56 8 1518 1914 33414768 33414378 2.060000e-86 329.0
3 TraesCS7B01G033700 chr7B 85.185 135 17 3 1646 1777 92014634 92014500 4.820000e-28 135.0
4 TraesCS7B01G033700 chr7A 88.534 846 52 17 1523 2339 85412550 85411721 0.000000e+00 983.0
5 TraesCS7B01G033700 chr7A 88.051 544 52 6 983 1525 85348028 85347497 1.400000e-177 632.0
6 TraesCS7B01G033700 chr7A 87.523 545 31 15 718 1259 85413303 85412793 1.840000e-166 595.0
7 TraesCS7B01G033700 chr7A 86.667 405 41 7 1518 1914 85347465 85347066 1.180000e-118 436.0
8 TraesCS7B01G033700 chr7A 88.146 329 29 2 2456 2774 85411672 85411344 1.560000e-102 383.0
9 TraesCS7B01G033700 chr7A 82.270 423 32 22 330 720 85413840 85413429 2.660000e-85 326.0
10 TraesCS7B01G033700 chr7A 84.000 175 21 1 2580 2754 85365616 85365449 7.950000e-36 161.0
11 TraesCS7B01G033700 chr7A 92.473 93 7 0 1647 1739 129704239 129704147 1.730000e-27 134.0
12 TraesCS7B01G033700 chr7D 86.676 713 46 25 662 1364 83755935 83755262 0.000000e+00 745.0
13 TraesCS7B01G033700 chr7D 84.063 822 67 31 581 1361 83664410 83663612 0.000000e+00 734.0
14 TraesCS7B01G033700 chr7D 91.709 398 26 5 1518 1914 83755108 83754717 1.880000e-151 545.0
15 TraesCS7B01G033700 chr7D 83.990 406 43 9 1521 1914 83663491 83663096 1.210000e-98 370.0
16 TraesCS7B01G033700 chr7D 88.889 216 21 2 121 336 83756530 83756318 2.120000e-66 263.0
17 TraesCS7B01G033700 chr7D 90.588 170 9 3 1969 2137 83749331 83749168 4.650000e-53 219.0
18 TraesCS7B01G033700 chr7D 80.240 334 30 17 331 628 83756274 83755941 4.650000e-53 219.0
19 TraesCS7B01G033700 chr7D 90.000 90 8 1 1651 1739 130924005 130923916 6.280000e-22 115.0
20 TraesCS7B01G033700 chr7D 86.667 60 2 3 8 67 478577150 478577203 8.300000e-06 62.1
21 TraesCS7B01G033700 chr1D 86.420 81 7 3 32 112 97911838 97911762 4.920000e-13 86.1
22 TraesCS7B01G033700 chr1D 91.837 49 3 1 2411 2458 490029640 490029592 1.780000e-07 67.6
23 TraesCS7B01G033700 chr3D 84.146 82 9 3 32 112 11420986 11420908 2.960000e-10 76.8
24 TraesCS7B01G033700 chr6D 91.071 56 3 2 62 117 24691977 24691924 1.070000e-09 75.0
25 TraesCS7B01G033700 chr6D 90.909 55 3 2 62 116 373362769 373362717 3.830000e-09 73.1
26 TraesCS7B01G033700 chr5B 83.333 84 10 3 32 112 271941921 271942003 1.070000e-09 75.0
27 TraesCS7B01G033700 chr2B 95.652 46 2 0 2411 2456 83196269 83196224 1.070000e-09 75.0
28 TraesCS7B01G033700 chr2B 93.878 49 2 1 2411 2458 585713595 585713547 3.830000e-09 73.1
29 TraesCS7B01G033700 chr3A 95.556 45 2 0 2411 2455 597543631 597543587 3.830000e-09 73.1
30 TraesCS7B01G033700 chr2D 95.556 45 2 0 2411 2455 650957738 650957694 3.830000e-09 73.1
31 TraesCS7B01G033700 chr2D 85.135 74 5 3 44 112 116641942 116641870 1.380000e-08 71.3
32 TraesCS7B01G033700 chr2D 86.364 66 7 2 2392 2455 119282442 119282377 1.380000e-08 71.3
33 TraesCS7B01G033700 chr1B 95.556 45 2 0 2411 2455 470541500 470541544 3.830000e-09 73.1
34 TraesCS7B01G033700 chr1B 91.837 49 4 0 2407 2455 352526611 352526659 4.960000e-08 69.4
35 TraesCS7B01G033700 chr5D 87.500 64 5 3 62 124 539823272 539823211 1.380000e-08 71.3
36 TraesCS7B01G033700 chr5D 79.130 115 9 9 3 112 202069002 202069106 6.410000e-07 65.8
37 TraesCS7B01G033700 chr3B 81.522 92 12 3 32 120 187353222 187353311 1.380000e-08 71.3
38 TraesCS7B01G033700 chr3B 85.294 68 5 4 3 67 111672691 111672626 6.410000e-07 65.8
39 TraesCS7B01G033700 chr5A 92.000 50 3 1 2411 2459 484847673 484847722 4.960000e-08 69.4
40 TraesCS7B01G033700 chr5A 86.792 53 1 2 15 67 219261115 219261069 1.000000e-03 54.7
41 TraesCS7B01G033700 chr1A 83.582 67 5 3 3 67 517098542 517098480 1.070000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G033700 chr7B 33527474 33530247 2773 True 5123.00 5123 100.00000 1 2774 1 chr7B.!!$R1 2773
1 TraesCS7B01G033700 chr7B 33414378 33415301 923 True 394.50 460 82.42750 983 1914 2 chr7B.!!$R3 931
2 TraesCS7B01G033700 chr7A 85411344 85413840 2496 True 571.75 983 86.61825 330 2774 4 chr7A.!!$R4 2444
3 TraesCS7B01G033700 chr7A 85347066 85348028 962 True 534.00 632 87.35900 983 1914 2 chr7A.!!$R3 931
4 TraesCS7B01G033700 chr7D 83663096 83664410 1314 True 552.00 734 84.02650 581 1914 2 chr7D.!!$R3 1333
5 TraesCS7B01G033700 chr7D 83754717 83756530 1813 True 443.00 745 86.87850 121 1914 4 chr7D.!!$R4 1793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 298 0.10212 CAAAGTTGCCTGCCGTTGAA 59.898 50.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2442 0.030101 ATGACCGGTGTTTGTTTGCG 59.97 50.0 14.63 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.791029 TGTGAACTACATATGGATGTACATGT 58.209 34.615 14.43 7.94 44.77 3.21
35 36 8.919145 TGTGAACTACATATGGATGTACATGTA 58.081 33.333 14.43 8.72 44.77 2.29
36 37 9.193133 GTGAACTACATATGGATGTACATGTAC 57.807 37.037 25.99 25.99 44.77 2.90
37 38 8.919145 TGAACTACATATGGATGTACATGTACA 58.081 33.333 34.35 34.35 44.77 2.90
55 56 9.371136 ACATGTACACAGACATATTTTAGAGTG 57.629 33.333 0.00 0.00 37.99 3.51
56 57 9.371136 CATGTACACAGACATATTTTAGAGTGT 57.629 33.333 0.00 0.00 37.99 3.55
61 62 9.944376 ACACAGACATATTTTAGAGTGTACATT 57.056 29.630 0.00 0.00 37.22 2.71
108 109 8.959705 AAAGACTTATATTTAGGAACGAAGGG 57.040 34.615 0.00 0.00 0.00 3.95
109 110 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
110 111 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
111 112 7.564292 AGACTTATATTTAGGAACGAAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
112 113 8.087303 ACTTATATTTAGGAACGAAGGGAGTT 57.913 34.615 0.00 0.00 34.07 3.01
113 114 7.985752 ACTTATATTTAGGAACGAAGGGAGTTG 59.014 37.037 0.00 0.00 31.14 3.16
114 115 4.635699 ATTTAGGAACGAAGGGAGTTGT 57.364 40.909 0.00 0.00 31.14 3.32
115 116 5.750352 ATTTAGGAACGAAGGGAGTTGTA 57.250 39.130 0.00 0.00 31.14 2.41
116 117 4.796038 TTAGGAACGAAGGGAGTTGTAG 57.204 45.455 0.00 0.00 31.14 2.74
117 118 2.885616 AGGAACGAAGGGAGTTGTAGA 58.114 47.619 0.00 0.00 31.14 2.59
118 119 2.826725 AGGAACGAAGGGAGTTGTAGAG 59.173 50.000 0.00 0.00 31.14 2.43
119 120 2.824341 GGAACGAAGGGAGTTGTAGAGA 59.176 50.000 0.00 0.00 31.14 3.10
126 127 6.127675 ACGAAGGGAGTTGTAGAGACTAATTC 60.128 42.308 0.00 0.00 0.00 2.17
128 129 7.363094 CGAAGGGAGTTGTAGAGACTAATTCTT 60.363 40.741 0.00 0.00 33.22 2.52
135 136 8.598041 AGTTGTAGAGACTAATTCTTGGATTGT 58.402 33.333 0.00 0.00 33.22 2.71
137 138 8.134202 TGTAGAGACTAATTCTTGGATTGTGA 57.866 34.615 0.00 0.00 33.22 3.58
140 141 6.541641 AGAGACTAATTCTTGGATTGTGATGC 59.458 38.462 0.00 0.00 33.22 3.91
141 142 6.182627 AGACTAATTCTTGGATTGTGATGCA 58.817 36.000 0.00 0.00 0.00 3.96
144 145 8.523915 ACTAATTCTTGGATTGTGATGCAATA 57.476 30.769 0.00 0.00 46.90 1.90
151 152 4.411869 TGGATTGTGATGCAATAGGAGGTA 59.588 41.667 0.00 0.00 46.90 3.08
154 155 4.356405 TGTGATGCAATAGGAGGTATGG 57.644 45.455 0.00 0.00 0.00 2.74
160 161 5.227569 TGCAATAGGAGGTATGGTATGTG 57.772 43.478 0.00 0.00 0.00 3.21
161 162 4.658435 TGCAATAGGAGGTATGGTATGTGT 59.342 41.667 0.00 0.00 0.00 3.72
209 210 0.830648 CTTTCCGGAGATAGGGCACA 59.169 55.000 3.34 0.00 0.00 4.57
236 237 1.490693 CGCGGTGGTGATCATGCTAC 61.491 60.000 0.00 0.00 0.00 3.58
271 272 8.630054 AATTACTGATGTAGCCAAAAGTTACA 57.370 30.769 0.00 0.00 44.96 2.41
274 275 6.970484 ACTGATGTAGCCAAAAGTTACAAAG 58.030 36.000 0.00 0.00 44.19 2.77
283 284 7.608153 AGCCAAAAGTTACAAAGTTACAAAGT 58.392 30.769 0.00 0.00 0.00 2.66
286 287 8.166066 CCAAAAGTTACAAAGTTACAAAGTTGC 58.834 33.333 0.00 0.00 0.00 4.17
291 292 3.123050 CAAAGTTACAAAGTTGCCTGCC 58.877 45.455 0.00 0.00 0.00 4.85
297 298 0.102120 CAAAGTTGCCTGCCGTTGAA 59.898 50.000 0.00 0.00 0.00 2.69
305 306 2.084546 GCCTGCCGTTGAAGTAGAAAT 58.915 47.619 0.00 0.00 0.00 2.17
307 308 3.057526 GCCTGCCGTTGAAGTAGAAATTT 60.058 43.478 0.00 0.00 0.00 1.82
405 458 1.671379 GTGTGGGGACGGAGAAAGC 60.671 63.158 0.00 0.00 0.00 3.51
408 461 1.072505 TGGGGACGGAGAAAGCAAC 59.927 57.895 0.00 0.00 0.00 4.17
427 480 3.287312 ACGTGAACGAAACGATAGGAA 57.713 42.857 10.26 0.00 43.68 3.36
452 505 1.209127 CGTCAAACCGGCACCATTC 59.791 57.895 0.00 0.00 0.00 2.67
453 506 1.584495 GTCAAACCGGCACCATTCC 59.416 57.895 0.00 0.00 0.00 3.01
468 521 5.971202 GCACCATTCCGAGTAACAAATTATG 59.029 40.000 0.00 0.00 0.00 1.90
472 537 7.996644 ACCATTCCGAGTAACAAATTATGGTAT 59.003 33.333 0.00 0.00 40.88 2.73
473 538 8.289618 CCATTCCGAGTAACAAATTATGGTATG 58.710 37.037 0.00 0.00 32.74 2.39
474 539 9.051679 CATTCCGAGTAACAAATTATGGTATGA 57.948 33.333 0.00 0.00 32.74 2.15
475 540 9.793259 ATTCCGAGTAACAAATTATGGTATGAT 57.207 29.630 0.00 0.00 32.74 2.45
489 554 9.911788 ATTATGGTATGATAAAGCCTATTGGAG 57.088 33.333 0.00 0.00 34.57 3.86
490 555 6.763715 TGGTATGATAAAGCCTATTGGAGT 57.236 37.500 0.00 0.00 34.57 3.85
491 556 7.865530 TGGTATGATAAAGCCTATTGGAGTA 57.134 36.000 0.00 0.00 34.57 2.59
492 557 8.449423 TGGTATGATAAAGCCTATTGGAGTAT 57.551 34.615 0.00 0.00 34.57 2.12
493 558 8.321353 TGGTATGATAAAGCCTATTGGAGTATG 58.679 37.037 0.00 0.00 34.57 2.39
494 559 7.281100 GGTATGATAAAGCCTATTGGAGTATGC 59.719 40.741 0.00 0.00 34.57 3.14
524 604 0.879090 GGGACCAACTTAAGCAACCG 59.121 55.000 1.29 0.00 0.00 4.44
525 605 0.879090 GGACCAACTTAAGCAACCGG 59.121 55.000 0.00 0.00 0.00 5.28
526 606 0.240145 GACCAACTTAAGCAACCGGC 59.760 55.000 0.00 0.00 45.30 6.13
543 647 1.299089 GCACTGCAAACCAACCGAC 60.299 57.895 0.00 0.00 0.00 4.79
545 649 1.450669 ACTGCAAACCAACCGACGT 60.451 52.632 0.00 0.00 0.00 4.34
578 682 7.837863 TGTGTAGAGAAGAGTAATTAACCCTG 58.162 38.462 0.00 0.00 0.00 4.45
611 715 2.115291 GGGAATGTTCTCGCAGGCC 61.115 63.158 0.00 0.00 0.00 5.19
633 740 3.423154 GGTGAAGCAACCGAGCCG 61.423 66.667 0.00 0.00 34.23 5.52
644 751 4.636435 CGAGCCGGTTTGGGGTGT 62.636 66.667 1.90 0.00 38.07 4.16
646 753 4.596585 AGCCGGTTTGGGGTGTGG 62.597 66.667 1.90 0.00 36.20 4.17
707 833 2.090658 CACAGAGCTTTTGTACGCGTAG 59.909 50.000 21.25 10.70 0.00 3.51
711 837 2.593257 AGCTTTTGTACGCGTAGAGAC 58.407 47.619 21.25 11.40 0.00 3.36
757 1011 4.280174 AGACAGCATCAATCAACAAAGCTT 59.720 37.500 0.00 0.00 0.00 3.74
798 1059 3.318017 GCGCCTATTGTACTCCTACATG 58.682 50.000 0.00 0.00 32.70 3.21
799 1060 3.861131 GCGCCTATTGTACTCCTACATGG 60.861 52.174 0.00 0.00 32.70 3.66
800 1061 3.665190 GCCTATTGTACTCCTACATGGC 58.335 50.000 0.00 0.00 37.16 4.40
801 1062 3.325135 GCCTATTGTACTCCTACATGGCT 59.675 47.826 0.00 0.00 39.05 4.75
802 1063 4.527038 GCCTATTGTACTCCTACATGGCTA 59.473 45.833 0.00 0.00 39.05 3.93
803 1064 5.187967 GCCTATTGTACTCCTACATGGCTAT 59.812 44.000 0.00 0.00 39.05 2.97
804 1065 6.380274 GCCTATTGTACTCCTACATGGCTATA 59.620 42.308 0.00 0.00 39.05 1.31
805 1066 7.070074 GCCTATTGTACTCCTACATGGCTATAT 59.930 40.741 0.00 0.00 39.05 0.86
810 1071 9.984590 TTGTACTCCTACATGGCTATATATACA 57.015 33.333 0.00 0.00 32.70 2.29
848 1123 1.272203 TGACTCCTCACTCCTCACTCC 60.272 57.143 0.00 0.00 0.00 3.85
853 1128 0.679640 CTCACTCCTCACTCCTCGCT 60.680 60.000 0.00 0.00 0.00 4.93
950 1232 0.887836 GGTCAAAACCAGACCGGGAC 60.888 60.000 6.32 0.00 45.35 4.46
969 1251 2.357396 CAGGTGCTGTGCGCTGTA 60.357 61.111 9.73 0.00 39.23 2.74
970 1252 2.357517 AGGTGCTGTGCGCTGTAC 60.358 61.111 15.28 15.28 39.23 2.90
972 1254 3.036084 GTGCTGTGCGCTGTACGT 61.036 61.111 9.73 0.00 46.11 3.57
973 1255 3.035503 TGCTGTGCGCTGTACGTG 61.036 61.111 9.73 0.00 46.11 4.49
1304 1593 0.867746 TACTACACGTCGTCGCAAGT 59.132 50.000 0.99 5.95 41.18 3.16
1376 1665 1.303282 CGGAGGGGGAAAGGGAAAG 59.697 63.158 0.00 0.00 0.00 2.62
1377 1666 1.697910 GGAGGGGGAAAGGGAAAGG 59.302 63.158 0.00 0.00 0.00 3.11
1378 1667 1.000486 GAGGGGGAAAGGGAAAGGC 60.000 63.158 0.00 0.00 0.00 4.35
1379 1668 1.468202 AGGGGGAAAGGGAAAGGCT 60.468 57.895 0.00 0.00 0.00 4.58
1380 1669 1.305297 GGGGGAAAGGGAAAGGCTG 60.305 63.158 0.00 0.00 0.00 4.85
1381 1670 1.305297 GGGGAAAGGGAAAGGCTGG 60.305 63.158 0.00 0.00 0.00 4.85
1382 1671 1.984570 GGGAAAGGGAAAGGCTGGC 60.985 63.158 0.00 0.00 0.00 4.85
1408 1697 4.129737 CCGTGGCTCCGTCGACAT 62.130 66.667 17.16 0.00 0.00 3.06
1410 1699 1.138036 CGTGGCTCCGTCGACATTA 59.862 57.895 17.16 0.00 0.00 1.90
1415 1704 0.524816 GCTCCGTCGACATTAAGCGA 60.525 55.000 17.16 0.00 0.00 4.93
1446 1786 2.432628 GCAGCAGCGGAAGTACGT 60.433 61.111 0.00 0.00 35.98 3.57
1447 1787 2.027625 GCAGCAGCGGAAGTACGTT 61.028 57.895 0.00 0.00 35.98 3.99
1448 1788 1.956620 GCAGCAGCGGAAGTACGTTC 61.957 60.000 0.00 0.00 35.98 3.95
1449 1789 0.666274 CAGCAGCGGAAGTACGTTCA 60.666 55.000 0.00 0.00 36.82 3.18
1450 1790 0.388649 AGCAGCGGAAGTACGTTCAG 60.389 55.000 0.00 0.00 36.82 3.02
1452 1792 3.070060 GCGGAAGTACGTTCAGCG 58.930 61.111 0.00 6.79 44.80 5.18
1453 1793 2.442188 GCGGAAGTACGTTCAGCGG 61.442 63.158 0.00 0.00 44.80 5.52
1454 1794 2.442188 CGGAAGTACGTTCAGCGGC 61.442 63.158 0.00 0.00 46.52 6.53
1455 1795 1.080025 GGAAGTACGTTCAGCGGCT 60.080 57.895 0.00 0.00 46.52 5.52
1456 1796 0.669625 GGAAGTACGTTCAGCGGCTT 60.670 55.000 0.00 0.00 46.52 4.35
1457 1797 0.714439 GAAGTACGTTCAGCGGCTTC 59.286 55.000 0.00 5.15 46.52 3.86
1458 1798 0.317479 AAGTACGTTCAGCGGCTTCT 59.683 50.000 0.00 0.00 46.52 2.85
1459 1799 0.388649 AGTACGTTCAGCGGCTTCTG 60.389 55.000 0.00 0.00 46.52 3.02
1460 1800 0.666577 GTACGTTCAGCGGCTTCTGT 60.667 55.000 0.00 0.00 46.52 3.41
1461 1801 0.666274 TACGTTCAGCGGCTTCTGTG 60.666 55.000 0.00 0.00 46.52 3.66
1462 1802 1.956170 CGTTCAGCGGCTTCTGTGT 60.956 57.895 0.00 0.00 35.63 3.72
1463 1803 1.862806 GTTCAGCGGCTTCTGTGTC 59.137 57.895 0.00 0.00 35.63 3.67
1464 1804 0.880278 GTTCAGCGGCTTCTGTGTCA 60.880 55.000 0.00 0.00 35.63 3.58
1465 1805 0.601046 TTCAGCGGCTTCTGTGTCAG 60.601 55.000 0.00 0.00 35.63 3.51
1466 1806 2.031516 CAGCGGCTTCTGTGTCAGG 61.032 63.158 0.00 0.00 31.51 3.86
1467 1807 2.743928 GCGGCTTCTGTGTCAGGG 60.744 66.667 0.00 0.00 31.51 4.45
1468 1808 3.059982 CGGCTTCTGTGTCAGGGA 58.940 61.111 0.00 0.00 31.51 4.20
1469 1809 1.079543 CGGCTTCTGTGTCAGGGAG 60.080 63.158 0.00 0.00 31.51 4.30
1470 1810 1.376553 GGCTTCTGTGTCAGGGAGC 60.377 63.158 13.38 13.38 38.94 4.70
1471 1811 1.739562 GCTTCTGTGTCAGGGAGCG 60.740 63.158 9.04 0.00 33.92 5.03
1472 1812 1.668294 CTTCTGTGTCAGGGAGCGT 59.332 57.895 0.00 0.00 31.51 5.07
1473 1813 0.389166 CTTCTGTGTCAGGGAGCGTC 60.389 60.000 0.00 0.00 31.51 5.19
1474 1814 1.112916 TTCTGTGTCAGGGAGCGTCA 61.113 55.000 0.00 0.00 31.51 4.35
1475 1815 1.112916 TCTGTGTCAGGGAGCGTCAA 61.113 55.000 0.00 0.00 31.51 3.18
1496 1836 0.108424 GCAGAAGCAGAGACACGGAT 60.108 55.000 0.00 0.00 41.58 4.18
1501 1841 1.142748 GCAGAGACACGGATGGAGG 59.857 63.158 0.00 0.00 0.00 4.30
1506 1846 2.970639 ACACGGATGGAGGTGTCG 59.029 61.111 0.00 0.00 43.50 4.35
1512 1852 1.115467 GGATGGAGGTGTCGAGATGT 58.885 55.000 0.00 0.00 0.00 3.06
1527 1909 3.254024 ATGTTTGGGAGACGCGCCT 62.254 57.895 5.73 0.00 0.00 5.52
1739 2124 2.283298 CATCAAGTCCATCCTCAACCG 58.717 52.381 0.00 0.00 0.00 4.44
1819 2211 3.200593 GCGGCTGCTCTGATGGTG 61.201 66.667 11.21 0.00 38.39 4.17
1820 2212 2.580815 CGGCTGCTCTGATGGTGA 59.419 61.111 0.00 0.00 0.00 4.02
1822 2214 1.158484 CGGCTGCTCTGATGGTGATG 61.158 60.000 0.00 0.00 0.00 3.07
1833 2225 2.288948 TGATGGTGATGGCTTTTGTTGC 60.289 45.455 0.00 0.00 0.00 4.17
1846 2238 0.602638 TTGTTGCTGGCGTGGTCTAG 60.603 55.000 0.00 0.00 0.00 2.43
1915 2318 4.450082 GTTGGAGACACAACCTTTTTGT 57.550 40.909 0.00 0.00 43.72 2.83
1916 2319 5.570234 GTTGGAGACACAACCTTTTTGTA 57.430 39.130 0.00 0.00 43.72 2.41
1917 2320 5.956642 GTTGGAGACACAACCTTTTTGTAA 58.043 37.500 0.00 0.00 43.72 2.41
1918 2321 5.828299 TGGAGACACAACCTTTTTGTAAG 57.172 39.130 0.00 0.00 33.40 2.34
1919 2322 4.097286 TGGAGACACAACCTTTTTGTAAGC 59.903 41.667 0.00 0.00 33.40 3.09
1922 2345 6.280855 AGACACAACCTTTTTGTAAGCTTT 57.719 33.333 3.20 0.00 0.00 3.51
1944 2367 2.519377 TTTCGAACTCAGAGGCGAAA 57.481 45.000 26.33 26.33 46.46 3.46
1991 2415 1.845809 GACAGTTGCTGAGCGGGTTG 61.846 60.000 0.00 0.00 35.18 3.77
1994 2418 0.250901 AGTTGCTGAGCGGGTTGATT 60.251 50.000 0.00 0.00 0.00 2.57
2003 2428 1.808343 AGCGGGTTGATTACGAAAACC 59.192 47.619 0.00 0.00 42.21 3.27
2008 2433 2.481185 GGTTGATTACGAAAACCGAGCA 59.519 45.455 0.00 0.00 41.76 4.26
2010 2435 4.529446 GTTGATTACGAAAACCGAGCAAA 58.471 39.130 0.00 0.00 41.76 3.68
2017 2442 2.650297 CGAAAACCGAGCAAAAATCGTC 59.350 45.455 0.00 0.00 41.76 4.20
2024 2449 2.380660 GAGCAAAAATCGTCGCAAACA 58.619 42.857 0.00 0.00 0.00 2.83
2033 2458 1.430228 GTCGCAAACAAACACCGGT 59.570 52.632 0.00 0.00 0.00 5.28
2075 2500 3.637273 ACCACCGTCCCTGGCTTC 61.637 66.667 0.00 0.00 31.13 3.86
2105 2530 2.279120 CTCGCCGGAGCTGATCAC 60.279 66.667 5.05 0.00 36.60 3.06
2133 2558 1.367665 GCGCACACACAAACGAGAC 60.368 57.895 0.30 0.00 0.00 3.36
2168 2593 2.480593 GCACAACGTTGCGACTTTC 58.519 52.632 27.61 1.69 31.51 2.62
2171 2596 0.655733 ACAACGTTGCGACTTTCCTG 59.344 50.000 27.61 0.68 0.00 3.86
2183 2608 4.762809 CGACTTTCCTGTTTCTTTCTTCG 58.237 43.478 0.00 0.00 0.00 3.79
2190 2615 4.036380 TCCTGTTTCTTTCTTCGCCTTTTC 59.964 41.667 0.00 0.00 0.00 2.29
2191 2616 4.036852 CCTGTTTCTTTCTTCGCCTTTTCT 59.963 41.667 0.00 0.00 0.00 2.52
2203 2628 1.883926 GCCTTTTCTTTCGGCCTACAA 59.116 47.619 0.00 0.00 37.86 2.41
2229 2654 3.282157 CAGCGGCCCATGATTCCG 61.282 66.667 13.49 13.49 45.46 4.30
2256 2681 1.136305 GCTTCGTGCCATCCTACTACA 59.864 52.381 0.00 0.00 35.15 2.74
2257 2682 2.799917 GCTTCGTGCCATCCTACTACAG 60.800 54.545 0.00 0.00 35.15 2.74
2258 2683 2.139323 TCGTGCCATCCTACTACAGT 57.861 50.000 0.00 0.00 0.00 3.55
2259 2684 3.286329 TCGTGCCATCCTACTACAGTA 57.714 47.619 0.00 0.00 0.00 2.74
2260 2685 3.828921 TCGTGCCATCCTACTACAGTAT 58.171 45.455 0.00 0.00 0.00 2.12
2267 2692 6.321945 TGCCATCCTACTACAGTATTACGAAA 59.678 38.462 0.00 0.00 0.00 3.46
2269 2694 7.368833 CCATCCTACTACAGTATTACGAAAGG 58.631 42.308 0.00 0.00 0.00 3.11
2273 2698 6.319658 CCTACTACAGTATTACGAAAGGACCA 59.680 42.308 0.00 0.00 0.00 4.02
2290 2715 0.234884 CCAAGTTCGCCACGAGAAAC 59.765 55.000 0.00 0.00 37.14 2.78
2322 2747 3.958798 AGGTGAGCCTACGAGCTAATAAA 59.041 43.478 0.00 0.00 45.15 1.40
2323 2748 4.404715 AGGTGAGCCTACGAGCTAATAAAA 59.595 41.667 0.00 0.00 45.15 1.52
2345 2770 6.442513 AAACTAGATAACTGAAATGCTGCC 57.557 37.500 0.00 0.00 0.00 4.85
2346 2771 4.122776 ACTAGATAACTGAAATGCTGCCG 58.877 43.478 0.00 0.00 0.00 5.69
2347 2772 2.991250 AGATAACTGAAATGCTGCCGT 58.009 42.857 0.00 0.00 0.00 5.68
2348 2773 3.347216 AGATAACTGAAATGCTGCCGTT 58.653 40.909 0.00 0.00 0.00 4.44
2350 2775 0.318955 AACTGAAATGCTGCCGTTGC 60.319 50.000 0.00 0.00 38.26 4.17
2351 2776 1.444895 CTGAAATGCTGCCGTTGCC 60.445 57.895 0.00 0.00 36.33 4.52
2352 2777 2.504681 GAAATGCTGCCGTTGCCG 60.505 61.111 0.00 0.00 36.33 5.69
2353 2778 3.267597 GAAATGCTGCCGTTGCCGT 62.268 57.895 0.00 0.00 36.33 5.68
2354 2779 3.556543 AAATGCTGCCGTTGCCGTG 62.557 57.895 0.00 0.00 36.33 4.94
2358 2783 3.716006 CTGCCGTTGCCGTGACAG 61.716 66.667 0.00 0.00 36.33 3.51
2361 2786 4.988598 CCGTTGCCGTGACAGCCT 62.989 66.667 0.00 0.00 0.00 4.58
2362 2787 2.048597 CGTTGCCGTGACAGCCTA 60.049 61.111 0.00 0.00 0.00 3.93
2363 2788 1.666553 CGTTGCCGTGACAGCCTAA 60.667 57.895 0.00 0.00 0.00 2.69
2364 2789 1.225376 CGTTGCCGTGACAGCCTAAA 61.225 55.000 0.00 0.00 0.00 1.85
2365 2790 0.948678 GTTGCCGTGACAGCCTAAAA 59.051 50.000 0.00 0.00 0.00 1.52
2366 2791 1.069227 GTTGCCGTGACAGCCTAAAAG 60.069 52.381 0.00 0.00 0.00 2.27
2367 2792 0.107831 TGCCGTGACAGCCTAAAAGT 59.892 50.000 0.00 0.00 0.00 2.66
2368 2793 0.517316 GCCGTGACAGCCTAAAAGTG 59.483 55.000 0.00 0.00 0.00 3.16
2369 2794 0.517316 CCGTGACAGCCTAAAAGTGC 59.483 55.000 0.00 0.00 0.00 4.40
2370 2795 1.512926 CGTGACAGCCTAAAAGTGCT 58.487 50.000 0.00 0.00 38.67 4.40
2375 2800 3.677963 AGCCTAAAAGTGCTGCCAT 57.322 47.368 0.00 0.00 36.23 4.40
2376 2801 1.180029 AGCCTAAAAGTGCTGCCATG 58.820 50.000 0.00 0.00 36.23 3.66
2377 2802 0.174162 GCCTAAAAGTGCTGCCATGG 59.826 55.000 7.63 7.63 0.00 3.66
2378 2803 1.549203 CCTAAAAGTGCTGCCATGGT 58.451 50.000 14.67 0.00 0.00 3.55
2379 2804 2.722094 CCTAAAAGTGCTGCCATGGTA 58.278 47.619 14.67 8.24 0.00 3.25
2380 2805 3.088532 CCTAAAAGTGCTGCCATGGTAA 58.911 45.455 14.67 0.91 0.00 2.85
2381 2806 3.509575 CCTAAAAGTGCTGCCATGGTAAA 59.490 43.478 14.67 0.00 0.00 2.01
2382 2807 4.021544 CCTAAAAGTGCTGCCATGGTAAAA 60.022 41.667 14.67 0.00 0.00 1.52
2383 2808 3.385193 AAAGTGCTGCCATGGTAAAAC 57.615 42.857 14.67 9.87 0.00 2.43
2384 2809 1.256812 AGTGCTGCCATGGTAAAACC 58.743 50.000 14.67 0.00 39.22 3.27
2385 2810 0.109319 GTGCTGCCATGGTAAAACCG 60.109 55.000 14.67 0.00 42.58 4.44
2386 2811 1.247419 TGCTGCCATGGTAAAACCGG 61.247 55.000 14.67 0.00 42.58 5.28
2387 2812 1.510844 CTGCCATGGTAAAACCGGC 59.489 57.895 14.67 7.76 42.79 6.13
2388 2813 1.944234 CTGCCATGGTAAAACCGGCC 61.944 60.000 14.67 0.00 42.10 6.13
2389 2814 1.680989 GCCATGGTAAAACCGGCCT 60.681 57.895 14.67 0.00 42.58 5.19
2390 2815 1.663379 GCCATGGTAAAACCGGCCTC 61.663 60.000 14.67 0.00 42.58 4.70
2391 2816 0.034477 CCATGGTAAAACCGGCCTCT 60.034 55.000 0.00 0.00 42.58 3.69
2392 2817 1.094785 CATGGTAAAACCGGCCTCTG 58.905 55.000 0.00 0.00 42.58 3.35
2393 2818 0.679960 ATGGTAAAACCGGCCTCTGC 60.680 55.000 0.00 0.00 42.58 4.26
2394 2819 1.002502 GGTAAAACCGGCCTCTGCT 60.003 57.895 0.00 0.00 37.74 4.24
2395 2820 1.305930 GGTAAAACCGGCCTCTGCTG 61.306 60.000 0.00 0.00 43.89 4.41
2401 2826 4.963878 CGGCCTCTGCTGGTTTAT 57.036 55.556 0.00 0.00 40.37 1.40
2402 2827 2.695314 CGGCCTCTGCTGGTTTATC 58.305 57.895 0.00 0.00 40.37 1.75
2403 2828 0.179000 CGGCCTCTGCTGGTTTATCT 59.821 55.000 0.00 0.00 40.37 1.98
2404 2829 1.407437 CGGCCTCTGCTGGTTTATCTT 60.407 52.381 0.00 0.00 40.37 2.40
2405 2830 2.158957 CGGCCTCTGCTGGTTTATCTTA 60.159 50.000 0.00 0.00 40.37 2.10
2406 2831 3.681594 CGGCCTCTGCTGGTTTATCTTAA 60.682 47.826 0.00 0.00 40.37 1.85
2407 2832 3.628032 GGCCTCTGCTGGTTTATCTTAAC 59.372 47.826 0.00 0.00 37.74 2.01
2408 2833 4.261801 GCCTCTGCTGGTTTATCTTAACA 58.738 43.478 0.00 0.00 33.53 2.41
2419 2844 5.417894 GGTTTATCTTAACAAACTCCCCCTG 59.582 44.000 0.00 0.00 35.45 4.45
2420 2845 5.853572 TTATCTTAACAAACTCCCCCTGT 57.146 39.130 0.00 0.00 0.00 4.00
2421 2846 4.741928 ATCTTAACAAACTCCCCCTGTT 57.258 40.909 0.00 0.00 37.13 3.16
2422 2847 4.529716 TCTTAACAAACTCCCCCTGTTT 57.470 40.909 0.00 0.00 38.04 2.83
2426 2851 3.108847 ACAAACTCCCCCTGTTTCAAA 57.891 42.857 0.00 0.00 35.71 2.69
2429 2854 5.212745 ACAAACTCCCCCTGTTTCAAAATA 58.787 37.500 0.00 0.00 35.71 1.40
2430 2855 5.304357 ACAAACTCCCCCTGTTTCAAAATAG 59.696 40.000 0.00 0.00 35.71 1.73
2431 2856 5.333566 AACTCCCCCTGTTTCAAAATAGA 57.666 39.130 1.29 0.00 29.67 1.98
2432 2857 5.536497 ACTCCCCCTGTTTCAAAATAGAT 57.464 39.130 1.29 0.00 29.67 1.98
2435 2860 5.261216 TCCCCCTGTTTCAAAATAGATGAC 58.739 41.667 1.29 0.00 29.67 3.06
2436 2861 4.402474 CCCCCTGTTTCAAAATAGATGACC 59.598 45.833 1.29 0.00 29.67 4.02
2437 2862 4.402474 CCCCTGTTTCAAAATAGATGACCC 59.598 45.833 1.29 0.00 29.67 4.46
2438 2863 5.016173 CCCTGTTTCAAAATAGATGACCCA 58.984 41.667 1.29 0.00 29.67 4.51
2439 2864 5.480073 CCCTGTTTCAAAATAGATGACCCAA 59.520 40.000 1.29 0.00 29.67 4.12
2440 2865 6.389906 CCTGTTTCAAAATAGATGACCCAAC 58.610 40.000 1.29 0.00 29.67 3.77
2441 2866 6.209391 CCTGTTTCAAAATAGATGACCCAACT 59.791 38.462 1.29 0.00 29.67 3.16
2442 2867 7.255942 CCTGTTTCAAAATAGATGACCCAACTT 60.256 37.037 1.29 0.00 29.67 2.66
2443 2868 8.017418 TGTTTCAAAATAGATGACCCAACTTT 57.983 30.769 0.00 0.00 0.00 2.66
2444 2869 7.925483 TGTTTCAAAATAGATGACCCAACTTTG 59.075 33.333 0.00 0.00 0.00 2.77
2445 2870 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
2446 2871 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
2447 2872 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
2448 2873 7.175990 TCAAAATAGATGACCCAACTTTGTACC 59.824 37.037 0.00 0.00 0.00 3.34
2449 2874 5.772393 ATAGATGACCCAACTTTGTACCA 57.228 39.130 0.00 0.00 0.00 3.25
2450 2875 4.447138 AGATGACCCAACTTTGTACCAA 57.553 40.909 0.00 0.00 0.00 3.67
2451 2876 4.142038 AGATGACCCAACTTTGTACCAAC 58.858 43.478 0.00 0.00 0.00 3.77
2452 2877 3.655615 TGACCCAACTTTGTACCAACT 57.344 42.857 0.00 0.00 0.00 3.16
2453 2878 3.970842 TGACCCAACTTTGTACCAACTT 58.029 40.909 0.00 0.00 0.00 2.66
2454 2879 4.345854 TGACCCAACTTTGTACCAACTTT 58.654 39.130 0.00 0.00 0.00 2.66
2459 2884 6.381707 ACCCAACTTTGTACCAACTTTTACAT 59.618 34.615 0.00 0.00 0.00 2.29
2467 2892 7.260387 TGTACCAACTTTTACATGAGGGATA 57.740 36.000 0.00 0.00 0.00 2.59
2470 2895 9.185680 GTACCAACTTTTACATGAGGGATAAAT 57.814 33.333 0.00 0.00 0.00 1.40
2480 2905 7.579940 ACATGAGGGATAAATGATATCCTGT 57.420 36.000 12.81 7.55 42.34 4.00
2506 2933 0.526211 GTTCGGCCAGGGCTAAAAAG 59.474 55.000 12.03 0.00 41.60 2.27
2522 2949 3.459232 AAAAGCTCTGTTCTTTTGGGC 57.541 42.857 0.00 0.00 40.88 5.36
2535 2962 2.448582 TTGGGCCTCACCAACGACT 61.449 57.895 4.53 0.00 45.19 4.18
2538 2965 1.669440 GGCCTCACCAACGACTACA 59.331 57.895 0.00 0.00 38.86 2.74
2548 2975 5.235616 TCACCAACGACTACAAGATTCAAAC 59.764 40.000 0.00 0.00 0.00 2.93
2555 2982 9.825972 AACGACTACAAGATTCAAACATTTATG 57.174 29.630 0.00 0.00 0.00 1.90
2560 2987 9.630098 CTACAAGATTCAAACATTTATGCAGTT 57.370 29.630 0.00 0.00 0.00 3.16
2563 2990 7.801547 AGATTCAAACATTTATGCAGTTTCG 57.198 32.000 0.00 0.00 33.54 3.46
2566 2993 4.520874 TCAAACATTTATGCAGTTTCGGGA 59.479 37.500 0.00 0.00 33.54 5.14
2624 3059 2.290641 TGGTTGATGTATGTGGGTGGTC 60.291 50.000 0.00 0.00 0.00 4.02
2625 3060 2.365582 GTTGATGTATGTGGGTGGTCC 58.634 52.381 0.00 0.00 0.00 4.46
2691 3126 0.465097 ATCTTTCGCCATGCTCAGGG 60.465 55.000 0.00 0.00 34.91 4.45
2694 3129 0.960364 TTTCGCCATGCTCAGGGTTC 60.960 55.000 2.39 0.00 34.16 3.62
2718 3153 5.987019 ATACTTGGCTAAACCTATTCCCA 57.013 39.130 0.00 0.00 40.22 4.37
2728 3163 1.133668 ACCTATTCCCAAGCATGCCTC 60.134 52.381 15.66 0.00 0.00 4.70
2735 3170 1.202627 CCCAAGCATGCCTCTCTCTAC 60.203 57.143 15.66 0.00 0.00 2.59
2741 3176 5.467035 AGCATGCCTCTCTCTACTATTTC 57.533 43.478 15.66 0.00 0.00 2.17
2768 3203 4.694037 AGGTGTCGTATTTTTCTAAGTGCC 59.306 41.667 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.325198 TGTACATCCATATGTAGTTCACATTTC 57.675 33.333 1.24 0.00 46.01 2.17
6 7 9.851686 ATGTACATCCATATGTAGTTCACATTT 57.148 29.630 1.41 0.00 46.01 2.32
7 8 9.276590 CATGTACATCCATATGTAGTTCACATT 57.723 33.333 5.07 0.00 46.01 2.71
8 9 8.432013 ACATGTACATCCATATGTAGTTCACAT 58.568 33.333 5.07 1.81 46.68 3.21
9 10 7.791029 ACATGTACATCCATATGTAGTTCACA 58.209 34.615 5.07 0.00 46.68 3.58
10 11 9.193133 GTACATGTACATCCATATGTAGTTCAC 57.807 37.037 27.37 0.00 46.68 3.18
11 12 8.919145 TGTACATGTACATCCATATGTAGTTCA 58.081 33.333 30.31 5.79 46.68 3.18
12 13 9.193133 GTGTACATGTACATCCATATGTAGTTC 57.807 37.037 34.66 16.90 46.68 3.01
13 14 8.700973 TGTGTACATGTACATCCATATGTAGTT 58.299 33.333 34.66 0.00 46.68 2.24
14 15 8.245195 TGTGTACATGTACATCCATATGTAGT 57.755 34.615 34.66 0.16 46.68 2.73
15 16 8.576442 TCTGTGTACATGTACATCCATATGTAG 58.424 37.037 34.66 21.41 46.68 2.74
16 17 8.357402 GTCTGTGTACATGTACATCCATATGTA 58.643 37.037 34.66 10.94 46.36 2.29
17 18 7.147742 TGTCTGTGTACATGTACATCCATATGT 60.148 37.037 34.66 4.01 46.36 2.29
18 19 7.209475 TGTCTGTGTACATGTACATCCATATG 58.791 38.462 34.66 19.51 46.36 1.78
19 20 7.360113 TGTCTGTGTACATGTACATCCATAT 57.640 36.000 34.66 0.00 46.36 1.78
20 21 6.783708 TGTCTGTGTACATGTACATCCATA 57.216 37.500 34.66 21.09 46.36 2.74
21 22 5.675684 TGTCTGTGTACATGTACATCCAT 57.324 39.130 34.66 0.00 46.36 3.41
22 23 5.675684 ATGTCTGTGTACATGTACATCCA 57.324 39.130 34.66 27.46 46.36 3.41
23 24 8.662781 AAATATGTCTGTGTACATGTACATCC 57.337 34.615 34.66 24.93 46.36 3.51
29 30 9.371136 CACTCTAAAATATGTCTGTGTACATGT 57.629 33.333 2.69 2.69 40.29 3.21
30 31 9.371136 ACACTCTAAAATATGTCTGTGTACATG 57.629 33.333 0.00 0.00 40.29 3.21
35 36 9.944376 AATGTACACTCTAAAATATGTCTGTGT 57.056 29.630 0.00 0.00 40.02 3.72
82 83 9.392259 CCCTTCGTTCCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
83 84 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
84 85 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
85 86 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
86 87 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
87 88 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
88 89 7.985752 ACAACTCCCTTCGTTCCTAAATATAAG 59.014 37.037 0.00 0.00 0.00 1.73
89 90 7.854337 ACAACTCCCTTCGTTCCTAAATATAA 58.146 34.615 0.00 0.00 0.00 0.98
90 91 7.427989 ACAACTCCCTTCGTTCCTAAATATA 57.572 36.000 0.00 0.00 0.00 0.86
91 92 6.309389 ACAACTCCCTTCGTTCCTAAATAT 57.691 37.500 0.00 0.00 0.00 1.28
92 93 5.750352 ACAACTCCCTTCGTTCCTAAATA 57.250 39.130 0.00 0.00 0.00 1.40
93 94 4.635699 ACAACTCCCTTCGTTCCTAAAT 57.364 40.909 0.00 0.00 0.00 1.40
94 95 4.834496 TCTACAACTCCCTTCGTTCCTAAA 59.166 41.667 0.00 0.00 0.00 1.85
95 96 4.410099 TCTACAACTCCCTTCGTTCCTAA 58.590 43.478 0.00 0.00 0.00 2.69
96 97 4.015084 CTCTACAACTCCCTTCGTTCCTA 58.985 47.826 0.00 0.00 0.00 2.94
97 98 2.826725 CTCTACAACTCCCTTCGTTCCT 59.173 50.000 0.00 0.00 0.00 3.36
98 99 2.824341 TCTCTACAACTCCCTTCGTTCC 59.176 50.000 0.00 0.00 0.00 3.62
99 100 3.506844 AGTCTCTACAACTCCCTTCGTTC 59.493 47.826 0.00 0.00 0.00 3.95
100 101 3.498334 AGTCTCTACAACTCCCTTCGTT 58.502 45.455 0.00 0.00 0.00 3.85
101 102 3.157750 AGTCTCTACAACTCCCTTCGT 57.842 47.619 0.00 0.00 0.00 3.85
102 103 5.838531 ATTAGTCTCTACAACTCCCTTCG 57.161 43.478 0.00 0.00 0.00 3.79
103 104 7.412853 AGAATTAGTCTCTACAACTCCCTTC 57.587 40.000 0.00 0.00 0.00 3.46
104 105 7.310734 CCAAGAATTAGTCTCTACAACTCCCTT 60.311 40.741 0.00 0.00 34.56 3.95
105 106 6.155393 CCAAGAATTAGTCTCTACAACTCCCT 59.845 42.308 0.00 0.00 34.56 4.20
106 107 6.154706 TCCAAGAATTAGTCTCTACAACTCCC 59.845 42.308 0.00 0.00 34.56 4.30
107 108 7.171630 TCCAAGAATTAGTCTCTACAACTCC 57.828 40.000 0.00 0.00 34.56 3.85
108 109 9.092876 CAATCCAAGAATTAGTCTCTACAACTC 57.907 37.037 0.00 0.00 34.56 3.01
109 110 8.598041 ACAATCCAAGAATTAGTCTCTACAACT 58.402 33.333 0.00 0.00 34.56 3.16
110 111 8.660373 CACAATCCAAGAATTAGTCTCTACAAC 58.340 37.037 0.00 0.00 34.56 3.32
111 112 8.593679 TCACAATCCAAGAATTAGTCTCTACAA 58.406 33.333 0.00 0.00 34.56 2.41
112 113 8.134202 TCACAATCCAAGAATTAGTCTCTACA 57.866 34.615 0.00 0.00 34.56 2.74
113 114 9.039870 CATCACAATCCAAGAATTAGTCTCTAC 57.960 37.037 0.00 0.00 34.56 2.59
114 115 7.712639 GCATCACAATCCAAGAATTAGTCTCTA 59.287 37.037 0.00 0.00 34.56 2.43
115 116 6.541641 GCATCACAATCCAAGAATTAGTCTCT 59.458 38.462 0.00 0.00 34.56 3.10
116 117 6.317140 TGCATCACAATCCAAGAATTAGTCTC 59.683 38.462 0.00 0.00 34.56 3.36
117 118 6.182627 TGCATCACAATCCAAGAATTAGTCT 58.817 36.000 0.00 0.00 38.69 3.24
118 119 6.441093 TGCATCACAATCCAAGAATTAGTC 57.559 37.500 0.00 0.00 0.00 2.59
119 120 6.839124 TTGCATCACAATCCAAGAATTAGT 57.161 33.333 0.00 0.00 31.73 2.24
126 127 4.277672 CCTCCTATTGCATCACAATCCAAG 59.722 45.833 0.00 0.00 46.28 3.61
128 129 3.202818 ACCTCCTATTGCATCACAATCCA 59.797 43.478 0.00 0.00 46.28 3.41
135 136 5.547666 ACATACCATACCTCCTATTGCATCA 59.452 40.000 0.00 0.00 0.00 3.07
137 138 5.310594 ACACATACCATACCTCCTATTGCAT 59.689 40.000 0.00 0.00 0.00 3.96
140 141 8.208224 TGTTTACACATACCATACCTCCTATTG 58.792 37.037 0.00 0.00 0.00 1.90
141 142 8.326765 TGTTTACACATACCATACCTCCTATT 57.673 34.615 0.00 0.00 0.00 1.73
144 145 6.824958 ATGTTTACACATACCATACCTCCT 57.175 37.500 0.00 0.00 42.24 3.69
175 176 8.662781 TCTCCGGAAAGATACAATAAGAATTG 57.337 34.615 5.23 0.00 46.66 2.32
186 187 2.897969 TGCCCTATCTCCGGAAAGATAC 59.102 50.000 5.23 0.00 37.24 2.24
209 210 0.605319 ATCACCACCGCGTTTGACAT 60.605 50.000 4.92 0.00 0.00 3.06
236 237 8.461222 TGGCTACATCAGTAATTCATTTCAAAG 58.539 33.333 0.00 0.00 0.00 2.77
250 251 6.546034 ACTTTGTAACTTTTGGCTACATCAGT 59.454 34.615 0.00 0.00 0.00 3.41
283 284 0.394938 TCTACTTCAACGGCAGGCAA 59.605 50.000 0.00 0.00 0.00 4.52
286 287 4.215399 TGAAATTTCTACTTCAACGGCAGG 59.785 41.667 18.64 0.00 0.00 4.85
291 292 6.954944 TGAACCTGAAATTTCTACTTCAACG 58.045 36.000 18.64 0.00 31.41 4.10
297 298 7.349598 AGCCATATGAACCTGAAATTTCTACT 58.650 34.615 18.64 1.58 0.00 2.57
305 306 5.415701 GTGAAAGAGCCATATGAACCTGAAA 59.584 40.000 3.65 0.00 0.00 2.69
307 308 4.225942 AGTGAAAGAGCCATATGAACCTGA 59.774 41.667 3.65 0.00 0.00 3.86
405 458 2.981805 TCCTATCGTTTCGTTCACGTTG 59.018 45.455 0.00 0.00 38.81 4.10
408 461 3.059044 CAGTTCCTATCGTTTCGTTCACG 59.941 47.826 0.00 0.00 39.08 4.35
427 480 2.325082 GCCGGTTTGACGCATCAGT 61.325 57.895 1.90 0.00 35.83 3.41
468 521 7.281100 GCATACTCCAATAGGCTTTATCATACC 59.719 40.741 0.00 0.00 33.74 2.73
472 537 6.439636 AGCATACTCCAATAGGCTTTATCA 57.560 37.500 0.00 0.00 39.04 2.15
515 595 1.103987 TTTGCAGTGCCGGTTGCTTA 61.104 50.000 22.20 11.77 40.87 3.09
516 596 2.422231 TTTGCAGTGCCGGTTGCTT 61.422 52.632 22.20 0.00 40.87 3.91
517 597 2.832661 TTTGCAGTGCCGGTTGCT 60.833 55.556 22.20 8.58 40.87 3.91
520 600 2.055042 TTGGTTTGCAGTGCCGGTT 61.055 52.632 13.72 0.00 0.00 4.44
523 603 2.027460 GGTTGGTTTGCAGTGCCG 59.973 61.111 13.72 0.00 0.00 5.69
524 604 2.027460 CGGTTGGTTTGCAGTGCC 59.973 61.111 13.72 0.00 0.00 5.01
525 605 1.299089 GTCGGTTGGTTTGCAGTGC 60.299 57.895 8.58 8.58 0.00 4.40
526 606 1.010125 CGTCGGTTGGTTTGCAGTG 60.010 57.895 0.00 0.00 0.00 3.66
527 607 1.433837 GACGTCGGTTGGTTTGCAGT 61.434 55.000 0.00 0.00 0.00 4.40
528 608 1.278637 GACGTCGGTTGGTTTGCAG 59.721 57.895 0.00 0.00 0.00 4.41
529 609 2.181521 GGACGTCGGTTGGTTTGCA 61.182 57.895 9.92 0.00 0.00 4.08
530 610 2.635338 GGACGTCGGTTGGTTTGC 59.365 61.111 9.92 0.00 0.00 3.68
543 647 1.226974 CTCTACACATGGCCGGACG 60.227 63.158 5.05 0.00 0.00 4.79
545 649 0.824109 CTTCTCTACACATGGCCGGA 59.176 55.000 5.05 0.00 0.00 5.14
578 682 0.105408 TTCCCCGCGGATTAACTAGC 59.895 55.000 30.73 0.00 38.24 3.42
611 715 3.726517 CGGTTGCTTCACCCAGCG 61.727 66.667 0.00 0.00 43.37 5.18
633 740 0.973632 GATTTCCCACACCCCAAACC 59.026 55.000 0.00 0.00 0.00 3.27
646 753 3.799281 TCATGAAAATGGGCGATTTCC 57.201 42.857 7.96 0.00 35.23 3.13
647 754 4.997565 TCTTCATGAAAATGGGCGATTTC 58.002 39.130 9.88 4.87 32.76 2.17
707 833 2.424956 ACCATAAACTACGTCCCGTCTC 59.575 50.000 0.00 0.00 41.54 3.36
711 837 3.515330 AGAACCATAAACTACGTCCCG 57.485 47.619 0.00 0.00 0.00 5.14
734 988 3.825014 AGCTTTGTTGATTGATGCTGTCT 59.175 39.130 0.00 0.00 0.00 3.41
784 1041 9.984590 TGTATATATAGCCATGTAGGAGTACAA 57.015 33.333 0.00 0.00 42.54 2.41
848 1123 2.080693 AGTGACTCAGTAGACAGCGAG 58.919 52.381 0.00 0.00 0.00 5.03
853 1128 3.790089 TGAGGAGTGACTCAGTAGACA 57.210 47.619 15.33 2.28 42.26 3.41
933 1208 1.070105 CGTCCCGGTCTGGTTTTGA 59.930 57.895 0.00 0.00 35.15 2.69
936 1214 3.530910 CTGCGTCCCGGTCTGGTTT 62.531 63.158 0.00 0.00 35.15 3.27
963 1245 1.466167 AGTACAGGTACACGTACAGCG 59.534 52.381 20.07 0.12 40.37 5.18
967 1249 6.668323 TCTTTTACAGTACAGGTACACGTAC 58.332 40.000 11.78 13.47 38.48 3.67
968 1250 6.875948 TCTTTTACAGTACAGGTACACGTA 57.124 37.500 11.78 9.31 38.48 3.57
969 1251 5.772825 TCTTTTACAGTACAGGTACACGT 57.227 39.130 11.78 10.16 38.48 4.49
970 1252 6.864685 TGAATCTTTTACAGTACAGGTACACG 59.135 38.462 11.78 5.20 38.48 4.49
972 1254 8.038944 GGATGAATCTTTTACAGTACAGGTACA 58.961 37.037 11.78 0.00 38.48 2.90
973 1255 7.494952 GGGATGAATCTTTTACAGTACAGGTAC 59.505 40.741 1.33 1.33 36.35 3.34
1121 1404 3.144120 CTCCTCCGCCTGGACATCG 62.144 68.421 0.00 0.00 40.17 3.84
1128 1411 4.154347 GTGAGCCTCCTCCGCCTG 62.154 72.222 0.00 0.00 37.29 4.85
1259 1542 4.662961 CGTGGTGGAGCTGCGACA 62.663 66.667 0.00 0.00 0.00 4.35
1304 1593 1.525175 GACCTCCTCTCCTCCCTCTA 58.475 60.000 0.00 0.00 0.00 2.43
1361 1650 1.468202 AGCCTTTCCCTTTCCCCCT 60.468 57.895 0.00 0.00 0.00 4.79
1365 1654 2.343426 CGCCAGCCTTTCCCTTTCC 61.343 63.158 0.00 0.00 0.00 3.13
1408 1697 1.134431 TGCTGCATCAGGATCGCTTAA 60.134 47.619 0.00 0.00 31.21 1.85
1410 1699 0.814410 CTGCTGCATCAGGATCGCTT 60.814 55.000 9.75 0.00 30.16 4.68
1434 1774 1.443872 CGCTGAACGTACTTCCGCT 60.444 57.895 14.51 0.00 37.05 5.52
1435 1775 2.442188 CCGCTGAACGTACTTCCGC 61.442 63.158 0.00 9.69 41.42 5.54
1436 1776 2.442188 GCCGCTGAACGTACTTCCG 61.442 63.158 0.00 0.00 41.42 4.30
1437 1777 0.669625 AAGCCGCTGAACGTACTTCC 60.670 55.000 0.00 0.00 41.42 3.46
1438 1778 0.714439 GAAGCCGCTGAACGTACTTC 59.286 55.000 0.00 0.00 42.27 3.01
1439 1779 0.317479 AGAAGCCGCTGAACGTACTT 59.683 50.000 0.00 0.00 41.42 2.24
1440 1780 0.388649 CAGAAGCCGCTGAACGTACT 60.389 55.000 0.00 0.00 41.42 2.73
1441 1781 0.666577 ACAGAAGCCGCTGAACGTAC 60.667 55.000 10.10 0.00 41.42 3.67
1442 1782 0.666274 CACAGAAGCCGCTGAACGTA 60.666 55.000 10.10 0.00 41.42 3.57
1443 1783 1.956170 CACAGAAGCCGCTGAACGT 60.956 57.895 10.10 0.00 41.42 3.99
1444 1784 1.891060 GACACAGAAGCCGCTGAACG 61.891 60.000 10.10 1.80 39.20 3.95
1445 1785 0.880278 TGACACAGAAGCCGCTGAAC 60.880 55.000 10.10 2.62 39.20 3.18
1446 1786 0.601046 CTGACACAGAAGCCGCTGAA 60.601 55.000 10.10 0.00 39.20 3.02
1447 1787 1.005748 CTGACACAGAAGCCGCTGA 60.006 57.895 10.10 0.00 39.20 4.26
1448 1788 2.031516 CCTGACACAGAAGCCGCTG 61.032 63.158 0.00 2.14 41.63 5.18
1449 1789 2.345244 CCTGACACAGAAGCCGCT 59.655 61.111 0.00 0.00 32.44 5.52
1450 1790 2.743928 CCCTGACACAGAAGCCGC 60.744 66.667 0.00 0.00 32.44 6.53
1451 1791 1.079543 CTCCCTGACACAGAAGCCG 60.080 63.158 0.00 0.00 32.44 5.52
1452 1792 1.376553 GCTCCCTGACACAGAAGCC 60.377 63.158 11.92 0.00 32.44 4.35
1453 1793 1.739562 CGCTCCCTGACACAGAAGC 60.740 63.158 12.55 12.55 32.44 3.86
1454 1794 0.389166 GACGCTCCCTGACACAGAAG 60.389 60.000 0.00 0.00 32.44 2.85
1455 1795 1.112916 TGACGCTCCCTGACACAGAA 61.113 55.000 0.00 0.00 32.44 3.02
1456 1796 1.112916 TTGACGCTCCCTGACACAGA 61.113 55.000 0.00 0.00 32.44 3.41
1457 1797 0.668706 CTTGACGCTCCCTGACACAG 60.669 60.000 0.00 0.00 0.00 3.66
1458 1798 1.367471 CTTGACGCTCCCTGACACA 59.633 57.895 0.00 0.00 0.00 3.72
1459 1799 1.374758 CCTTGACGCTCCCTGACAC 60.375 63.158 0.00 0.00 0.00 3.67
1460 1800 3.059982 CCTTGACGCTCCCTGACA 58.940 61.111 0.00 0.00 0.00 3.58
1461 1801 2.435059 GCCTTGACGCTCCCTGAC 60.435 66.667 0.00 0.00 0.00 3.51
1462 1802 2.922503 TGCCTTGACGCTCCCTGA 60.923 61.111 0.00 0.00 0.00 3.86
1463 1803 2.435586 CTGCCTTGACGCTCCCTG 60.436 66.667 0.00 0.00 0.00 4.45
1464 1804 2.177594 CTTCTGCCTTGACGCTCCCT 62.178 60.000 0.00 0.00 0.00 4.20
1465 1805 1.743252 CTTCTGCCTTGACGCTCCC 60.743 63.158 0.00 0.00 0.00 4.30
1466 1806 2.394563 GCTTCTGCCTTGACGCTCC 61.395 63.158 0.00 0.00 0.00 4.70
1467 1807 1.633852 CTGCTTCTGCCTTGACGCTC 61.634 60.000 0.00 0.00 38.71 5.03
1468 1808 1.670406 CTGCTTCTGCCTTGACGCT 60.670 57.895 0.00 0.00 38.71 5.07
1469 1809 1.633852 CTCTGCTTCTGCCTTGACGC 61.634 60.000 0.00 0.00 38.71 5.19
1470 1810 0.037882 TCTCTGCTTCTGCCTTGACG 60.038 55.000 0.00 0.00 38.71 4.35
1471 1811 1.270518 TGTCTCTGCTTCTGCCTTGAC 60.271 52.381 0.00 0.00 38.71 3.18
1472 1812 1.051008 TGTCTCTGCTTCTGCCTTGA 58.949 50.000 0.00 0.00 38.71 3.02
1473 1813 1.155042 GTGTCTCTGCTTCTGCCTTG 58.845 55.000 0.00 0.00 38.71 3.61
1474 1814 0.320247 CGTGTCTCTGCTTCTGCCTT 60.320 55.000 0.00 0.00 38.71 4.35
1475 1815 1.291588 CGTGTCTCTGCTTCTGCCT 59.708 57.895 0.00 0.00 38.71 4.75
1496 1836 1.001974 CCAAACATCTCGACACCTCCA 59.998 52.381 0.00 0.00 0.00 3.86
1501 1841 2.338500 GTCTCCCAAACATCTCGACAC 58.662 52.381 0.00 0.00 0.00 3.67
1506 1846 1.696832 GCGCGTCTCCCAAACATCTC 61.697 60.000 8.43 0.00 0.00 2.75
1558 1940 2.125673 CGTCGTAGCACCCTTGGG 60.126 66.667 3.77 3.77 0.00 4.12
1819 2211 1.010419 CGCCAGCAACAAAAGCCATC 61.010 55.000 0.00 0.00 0.00 3.51
1820 2212 1.005867 CGCCAGCAACAAAAGCCAT 60.006 52.632 0.00 0.00 0.00 4.40
1822 2214 1.950630 CACGCCAGCAACAAAAGCC 60.951 57.895 0.00 0.00 0.00 4.35
1833 2225 3.587797 TTTTCTACTAGACCACGCCAG 57.412 47.619 0.00 0.00 0.00 4.85
1867 2259 0.721718 GGGAAGCACAGATCGAAACG 59.278 55.000 0.00 0.00 0.00 3.60
1926 2349 1.935300 GCTTTCGCCTCTGAGTTCGAA 60.935 52.381 20.46 20.46 38.88 3.71
1991 2415 5.002189 CGATTTTTGCTCGGTTTTCGTAATC 59.998 40.000 0.00 0.00 40.32 1.75
1994 2418 3.248125 ACGATTTTTGCTCGGTTTTCGTA 59.752 39.130 0.00 0.00 40.37 3.43
2003 2428 1.378807 GTTTGCGACGATTTTTGCTCG 59.621 47.619 0.00 0.00 41.77 5.03
2008 2433 3.304826 GGTGTTTGTTTGCGACGATTTTT 59.695 39.130 0.00 0.00 0.00 1.94
2010 2435 2.456010 GGTGTTTGTTTGCGACGATTT 58.544 42.857 0.00 0.00 0.00 2.17
2017 2442 0.030101 ATGACCGGTGTTTGTTTGCG 59.970 50.000 14.63 0.00 0.00 4.85
2024 2449 3.348647 TCATCATGATGACCGGTGTTT 57.651 42.857 30.27 0.00 42.42 2.83
2033 2458 3.613030 CCACTGGTTGTCATCATGATGA 58.387 45.455 30.27 30.27 44.83 2.92
2067 2492 2.380410 CGTTCCGTTCGAAGCCAGG 61.380 63.158 0.00 0.00 0.00 4.45
2075 2500 3.533691 GCGAGCTCGTTCCGTTCG 61.534 66.667 34.46 9.89 42.22 3.95
2168 2593 3.990318 AAAGGCGAAGAAAGAAACAGG 57.010 42.857 0.00 0.00 0.00 4.00
2171 2596 5.171516 CGAAAGAAAAGGCGAAGAAAGAAAC 59.828 40.000 0.00 0.00 0.00 2.78
2229 2654 0.878086 GATGGCACGAAGCTCTAGGC 60.878 60.000 0.00 0.00 44.79 3.93
2256 2681 5.166398 CGAACTTGGTCCTTTCGTAATACT 58.834 41.667 10.84 0.00 37.84 2.12
2257 2682 4.201656 GCGAACTTGGTCCTTTCGTAATAC 60.202 45.833 16.95 2.97 43.20 1.89
2258 2683 3.928375 GCGAACTTGGTCCTTTCGTAATA 59.072 43.478 16.95 0.00 43.20 0.98
2259 2684 2.740447 GCGAACTTGGTCCTTTCGTAAT 59.260 45.455 16.95 0.00 43.20 1.89
2260 2685 2.137523 GCGAACTTGGTCCTTTCGTAA 58.862 47.619 16.95 0.00 43.20 3.18
2267 2692 2.030562 CGTGGCGAACTTGGTCCT 59.969 61.111 0.00 0.00 0.00 3.85
2269 2694 0.599204 TTCTCGTGGCGAACTTGGTC 60.599 55.000 0.00 0.00 34.74 4.02
2273 2698 1.828331 GCGTTTCTCGTGGCGAACTT 61.828 55.000 0.00 0.00 42.13 2.66
2322 2747 5.065218 CGGCAGCATTTCAGTTATCTAGTTT 59.935 40.000 0.00 0.00 0.00 2.66
2323 2748 4.572389 CGGCAGCATTTCAGTTATCTAGTT 59.428 41.667 0.00 0.00 0.00 2.24
2346 2771 0.948678 TTTTAGGCTGTCACGGCAAC 59.051 50.000 11.68 0.00 37.51 4.17
2347 2772 1.234821 CTTTTAGGCTGTCACGGCAA 58.765 50.000 11.68 0.00 37.51 4.52
2348 2773 0.107831 ACTTTTAGGCTGTCACGGCA 59.892 50.000 11.68 0.00 37.51 5.69
2350 2775 0.517316 GCACTTTTAGGCTGTCACGG 59.483 55.000 0.00 0.00 0.00 4.94
2351 2776 1.512926 AGCACTTTTAGGCTGTCACG 58.487 50.000 0.00 0.00 39.30 4.35
2357 2782 1.180029 CATGGCAGCACTTTTAGGCT 58.820 50.000 0.00 0.00 42.06 4.58
2358 2783 0.174162 CCATGGCAGCACTTTTAGGC 59.826 55.000 0.00 0.00 0.00 3.93
2359 2784 1.549203 ACCATGGCAGCACTTTTAGG 58.451 50.000 13.04 0.00 0.00 2.69
2360 2785 4.782019 TTTACCATGGCAGCACTTTTAG 57.218 40.909 13.04 0.00 0.00 1.85
2361 2786 4.262249 GGTTTTACCATGGCAGCACTTTTA 60.262 41.667 13.04 0.00 38.42 1.52
2362 2787 3.494223 GGTTTTACCATGGCAGCACTTTT 60.494 43.478 13.04 0.00 38.42 2.27
2363 2788 2.037121 GGTTTTACCATGGCAGCACTTT 59.963 45.455 13.04 0.00 38.42 2.66
2364 2789 1.618343 GGTTTTACCATGGCAGCACTT 59.382 47.619 13.04 0.00 38.42 3.16
2365 2790 1.256812 GGTTTTACCATGGCAGCACT 58.743 50.000 13.04 0.00 38.42 4.40
2366 2791 0.109319 CGGTTTTACCATGGCAGCAC 60.109 55.000 13.04 3.80 38.47 4.40
2367 2792 1.247419 CCGGTTTTACCATGGCAGCA 61.247 55.000 13.04 0.00 38.47 4.41
2368 2793 1.510844 CCGGTTTTACCATGGCAGC 59.489 57.895 13.04 2.20 38.47 5.25
2369 2794 1.510844 GCCGGTTTTACCATGGCAG 59.489 57.895 13.04 0.00 42.27 4.85
2370 2795 1.979693 GGCCGGTTTTACCATGGCA 60.980 57.895 13.04 0.00 43.82 4.92
2371 2796 1.663379 GAGGCCGGTTTTACCATGGC 61.663 60.000 13.04 6.30 42.06 4.40
2372 2797 0.034477 AGAGGCCGGTTTTACCATGG 60.034 55.000 11.19 11.19 38.47 3.66
2373 2798 1.094785 CAGAGGCCGGTTTTACCATG 58.905 55.000 1.90 0.00 38.47 3.66
2374 2799 0.679960 GCAGAGGCCGGTTTTACCAT 60.680 55.000 1.90 0.00 38.47 3.55
2375 2800 1.302993 GCAGAGGCCGGTTTTACCA 60.303 57.895 1.90 0.00 38.47 3.25
2376 2801 1.002502 AGCAGAGGCCGGTTTTACC 60.003 57.895 1.90 0.00 42.56 2.85
2377 2802 1.305930 CCAGCAGAGGCCGGTTTTAC 61.306 60.000 1.90 0.00 42.56 2.01
2378 2803 1.002624 CCAGCAGAGGCCGGTTTTA 60.003 57.895 1.90 0.00 42.56 1.52
2379 2804 2.282462 CCAGCAGAGGCCGGTTTT 60.282 61.111 1.90 0.00 42.56 2.43
2383 2808 0.815615 GATAAACCAGCAGAGGCCGG 60.816 60.000 0.00 0.00 43.58 6.13
2384 2809 0.179000 AGATAAACCAGCAGAGGCCG 59.821 55.000 0.00 0.00 42.56 6.13
2385 2810 2.426842 AAGATAAACCAGCAGAGGCC 57.573 50.000 0.00 0.00 42.56 5.19
2386 2811 4.261801 TGTTAAGATAAACCAGCAGAGGC 58.738 43.478 0.00 0.00 41.61 4.70
2387 2812 6.431234 AGTTTGTTAAGATAAACCAGCAGAGG 59.569 38.462 0.00 0.00 37.52 3.69
2388 2813 7.361286 GGAGTTTGTTAAGATAAACCAGCAGAG 60.361 40.741 0.00 0.00 37.52 3.35
2389 2814 6.430000 GGAGTTTGTTAAGATAAACCAGCAGA 59.570 38.462 0.00 0.00 37.52 4.26
2390 2815 6.349363 GGGAGTTTGTTAAGATAAACCAGCAG 60.349 42.308 0.00 0.00 37.52 4.24
2391 2816 5.475564 GGGAGTTTGTTAAGATAAACCAGCA 59.524 40.000 0.00 0.00 37.52 4.41
2392 2817 5.105877 GGGGAGTTTGTTAAGATAAACCAGC 60.106 44.000 0.00 0.00 37.52 4.85
2393 2818 5.417894 GGGGGAGTTTGTTAAGATAAACCAG 59.582 44.000 0.00 0.00 37.52 4.00
2394 2819 5.075344 AGGGGGAGTTTGTTAAGATAAACCA 59.925 40.000 0.00 0.00 37.52 3.67
2395 2820 5.417894 CAGGGGGAGTTTGTTAAGATAAACC 59.582 44.000 0.00 0.00 37.52 3.27
2396 2821 6.008331 ACAGGGGGAGTTTGTTAAGATAAAC 58.992 40.000 0.00 0.00 37.20 2.01
2397 2822 6.208840 ACAGGGGGAGTTTGTTAAGATAAA 57.791 37.500 0.00 0.00 0.00 1.40
2398 2823 5.853572 ACAGGGGGAGTTTGTTAAGATAA 57.146 39.130 0.00 0.00 0.00 1.75
2399 2824 5.853572 AACAGGGGGAGTTTGTTAAGATA 57.146 39.130 0.00 0.00 33.57 1.98
2400 2825 4.741928 AACAGGGGGAGTTTGTTAAGAT 57.258 40.909 0.00 0.00 33.57 2.40
2401 2826 4.079672 TGAAACAGGGGGAGTTTGTTAAGA 60.080 41.667 0.00 0.00 39.15 2.10
2402 2827 4.211920 TGAAACAGGGGGAGTTTGTTAAG 58.788 43.478 0.00 0.00 39.15 1.85
2403 2828 4.252570 TGAAACAGGGGGAGTTTGTTAA 57.747 40.909 0.00 0.00 39.15 2.01
2404 2829 3.955524 TGAAACAGGGGGAGTTTGTTA 57.044 42.857 0.00 0.00 39.15 2.41
2405 2830 2.838637 TGAAACAGGGGGAGTTTGTT 57.161 45.000 0.00 0.00 39.15 2.83
2406 2831 2.838637 TTGAAACAGGGGGAGTTTGT 57.161 45.000 0.00 0.00 39.15 2.83
2407 2832 4.687901 ATTTTGAAACAGGGGGAGTTTG 57.312 40.909 0.00 0.00 39.15 2.93
2408 2833 5.711698 TCTATTTTGAAACAGGGGGAGTTT 58.288 37.500 0.00 0.00 41.53 2.66
2419 2844 7.926018 ACAAAGTTGGGTCATCTATTTTGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
2420 2845 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
2421 2846 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
2422 2847 7.175990 GGTACAAAGTTGGGTCATCTATTTTGA 59.824 37.037 0.00 0.00 0.00 2.69
2426 2851 6.134535 TGGTACAAAGTTGGGTCATCTATT 57.865 37.500 0.00 0.00 31.92 1.73
2443 2868 5.570205 TCCCTCATGTAAAAGTTGGTACA 57.430 39.130 0.00 2.96 34.84 2.90
2444 2869 8.570068 TTTATCCCTCATGTAAAAGTTGGTAC 57.430 34.615 0.00 0.00 0.00 3.34
2445 2870 9.184523 CATTTATCCCTCATGTAAAAGTTGGTA 57.815 33.333 0.00 0.00 0.00 3.25
2446 2871 7.893302 TCATTTATCCCTCATGTAAAAGTTGGT 59.107 33.333 0.00 0.00 0.00 3.67
2447 2872 8.292444 TCATTTATCCCTCATGTAAAAGTTGG 57.708 34.615 0.00 0.00 0.00 3.77
2453 2878 9.964354 CAGGATATCATTTATCCCTCATGTAAA 57.036 33.333 4.83 0.00 43.43 2.01
2454 2879 9.116080 ACAGGATATCATTTATCCCTCATGTAA 57.884 33.333 4.83 0.00 43.43 2.41
2459 2884 8.551440 CCAATACAGGATATCATTTATCCCTCA 58.449 37.037 4.83 0.00 43.43 3.86
2467 2892 6.486657 CCGAACACCAATACAGGATATCATTT 59.513 38.462 4.83 0.00 0.00 2.32
2470 2895 4.742440 GCCGAACACCAATACAGGATATCA 60.742 45.833 4.83 0.00 0.00 2.15
2480 2905 1.301623 CCCTGGCCGAACACCAATA 59.698 57.895 0.00 0.00 36.56 1.90
2506 2933 0.884514 GAGGCCCAAAAGAACAGAGC 59.115 55.000 0.00 0.00 0.00 4.09
2510 2937 0.260230 TGGTGAGGCCCAAAAGAACA 59.740 50.000 0.00 0.00 36.04 3.18
2512 2939 1.408969 GTTGGTGAGGCCCAAAAGAA 58.591 50.000 0.00 0.00 45.72 2.52
2522 2949 3.594603 ATCTTGTAGTCGTTGGTGAGG 57.405 47.619 0.00 0.00 0.00 3.86
2535 2962 9.979578 AAACTGCATAAATGTTTGAATCTTGTA 57.020 25.926 0.66 0.00 33.36 2.41
2538 2965 7.329226 CCGAAACTGCATAAATGTTTGAATCTT 59.671 33.333 5.81 0.00 34.55 2.40
2548 2975 2.791158 GCGTCCCGAAACTGCATAAATG 60.791 50.000 0.00 0.00 0.00 2.32
2555 2982 1.154225 CAATGCGTCCCGAAACTGC 60.154 57.895 0.00 0.00 0.00 4.40
2560 2987 3.053291 GCCACAATGCGTCCCGAA 61.053 61.111 0.00 0.00 0.00 4.30
2568 2995 4.369182 AGTAGAGTATTACGCCACAATGC 58.631 43.478 0.00 0.00 0.00 3.56
2624 3059 5.220854 CCTGAGCATATGTAAAAACCTTCGG 60.221 44.000 4.29 0.00 0.00 4.30
2625 3060 5.730568 GCCTGAGCATATGTAAAAACCTTCG 60.731 44.000 4.29 0.00 39.53 3.79
2646 3081 2.795110 GCATCCTCTGAGCTCGCCT 61.795 63.158 9.64 0.00 0.00 5.52
2656 3091 1.412079 AGATCTTGCGAGCATCCTCT 58.588 50.000 0.00 0.00 35.90 3.69
2657 3092 2.237393 AAGATCTTGCGAGCATCCTC 57.763 50.000 7.30 0.00 34.66 3.71
2678 3113 1.033746 ATTGAACCCTGAGCATGGCG 61.034 55.000 0.00 0.00 0.00 5.69
2718 3153 5.602145 AGAAATAGTAGAGAGAGGCATGCTT 59.398 40.000 18.92 10.66 0.00 3.91
2728 3163 6.987992 ACGACACCTAGAGAAATAGTAGAGAG 59.012 42.308 0.00 0.00 0.00 3.20
2735 3170 9.804758 AGAAAAATACGACACCTAGAGAAATAG 57.195 33.333 0.00 0.00 0.00 1.73
2741 3176 7.009357 GCACTTAGAAAAATACGACACCTAGAG 59.991 40.741 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.