Multiple sequence alignment - TraesCS7B01G032600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G032600 chr7B 100.000 2479 0 0 1 2479 32546135 32548613 0.000000e+00 4578.0
1 TraesCS7B01G032600 chr7D 93.881 1046 35 12 579 1596 83373548 83374592 0.000000e+00 1550.0
2 TraesCS7B01G032600 chr7D 89.625 694 28 14 1668 2340 83374628 83375298 0.000000e+00 843.0
3 TraesCS7B01G032600 chr7D 95.556 135 5 1 2340 2474 83376831 83376964 5.370000e-52 215.0
4 TraesCS7B01G032600 chr7A 90.366 1038 53 22 581 1596 85086494 85087506 0.000000e+00 1319.0
5 TraesCS7B01G032600 chr7A 92.361 576 28 8 1727 2288 85087584 85088157 0.000000e+00 806.0
6 TraesCS7B01G032600 chr7A 92.157 204 10 3 2275 2474 85088309 85088510 1.450000e-72 283.0
7 TraesCS7B01G032600 chr2B 95.675 578 23 2 1 578 12965428 12966003 0.000000e+00 928.0
8 TraesCS7B01G032600 chr2B 95.304 575 24 3 1 574 64337016 64336444 0.000000e+00 909.0
9 TraesCS7B01G032600 chr2B 85.000 80 10 2 1202 1280 6767130 6767052 2.040000e-11 80.5
10 TraesCS7B01G032600 chr2B 85.000 80 10 2 1202 1280 6815066 6814988 2.040000e-11 80.5
11 TraesCS7B01G032600 chr2B 85.000 80 10 2 1202 1280 6902529 6902451 2.040000e-11 80.5
12 TraesCS7B01G032600 chr1D 95.222 586 24 4 1 584 473537485 473536902 0.000000e+00 924.0
13 TraesCS7B01G032600 chr2A 95.304 575 24 3 1 574 733695091 733695663 0.000000e+00 909.0
14 TraesCS7B01G032600 chrUn 94.983 578 27 2 1 578 55786815 55786240 0.000000e+00 905.0
15 TraesCS7B01G032600 chrUn 94.983 578 27 2 1 578 302514942 302515517 0.000000e+00 905.0
16 TraesCS7B01G032600 chr4A 94.991 579 26 3 1 578 159497225 159496649 0.000000e+00 905.0
17 TraesCS7B01G032600 chr5B 94.819 579 27 3 1 579 308390854 308391429 0.000000e+00 900.0
18 TraesCS7B01G032600 chr3B 94.521 584 29 3 1 583 797016446 797015865 0.000000e+00 898.0
19 TraesCS7B01G032600 chr1B 86.667 75 8 2 1207 1280 42577627 42577700 5.680000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G032600 chr7B 32546135 32548613 2478 False 4578.000000 4578 100.000000 1 2479 1 chr7B.!!$F1 2478
1 TraesCS7B01G032600 chr7D 83373548 83376964 3416 False 869.333333 1550 93.020667 579 2474 3 chr7D.!!$F1 1895
2 TraesCS7B01G032600 chr7A 85086494 85088510 2016 False 802.666667 1319 91.628000 581 2474 3 chr7A.!!$F1 1893
3 TraesCS7B01G032600 chr2B 12965428 12966003 575 False 928.000000 928 95.675000 1 578 1 chr2B.!!$F1 577
4 TraesCS7B01G032600 chr2B 64336444 64337016 572 True 909.000000 909 95.304000 1 574 1 chr2B.!!$R4 573
5 TraesCS7B01G032600 chr1D 473536902 473537485 583 True 924.000000 924 95.222000 1 584 1 chr1D.!!$R1 583
6 TraesCS7B01G032600 chr2A 733695091 733695663 572 False 909.000000 909 95.304000 1 574 1 chr2A.!!$F1 573
7 TraesCS7B01G032600 chrUn 55786240 55786815 575 True 905.000000 905 94.983000 1 578 1 chrUn.!!$R1 577
8 TraesCS7B01G032600 chrUn 302514942 302515517 575 False 905.000000 905 94.983000 1 578 1 chrUn.!!$F1 577
9 TraesCS7B01G032600 chr4A 159496649 159497225 576 True 905.000000 905 94.991000 1 578 1 chr4A.!!$R1 577
10 TraesCS7B01G032600 chr5B 308390854 308391429 575 False 900.000000 900 94.819000 1 579 1 chr5B.!!$F1 578
11 TraesCS7B01G032600 chr3B 797015865 797016446 581 True 898.000000 898 94.521000 1 583 1 chr3B.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 692 0.248702 GAGGCTAGCGGAGAGAAACG 60.249 60.0 9.0 0.0 0.0 3.6 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 1679 0.096281 CCGTTGACACACACACACAC 59.904 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 5.423015 GTCAGTCATCCAAATAGCTTCTGA 58.577 41.667 0.00 0.00 0.00 3.27
129 130 4.864247 GCTAATGTATTTGGCAACTGGTTG 59.136 41.667 0.00 8.89 41.20 3.77
144 145 2.963101 CTGGTTGCATGGGATTGATCAT 59.037 45.455 0.00 0.00 0.00 2.45
147 148 4.141205 TGGTTGCATGGGATTGATCATAGA 60.141 41.667 0.00 0.00 0.00 1.98
258 260 6.552445 ACTTCTCTGTTGCAGGTTATCTAT 57.448 37.500 0.00 0.00 31.51 1.98
567 569 7.521871 TTAAGTAATAAAACGCCCCTTTTCA 57.478 32.000 0.00 0.00 0.00 2.69
568 570 6.408107 AAGTAATAAAACGCCCCTTTTCAA 57.592 33.333 0.00 0.00 0.00 2.69
569 571 6.408107 AGTAATAAAACGCCCCTTTTCAAA 57.592 33.333 0.00 0.00 0.00 2.69
570 572 6.818233 AGTAATAAAACGCCCCTTTTCAAAA 58.182 32.000 0.00 0.00 0.00 2.44
571 573 7.273712 AGTAATAAAACGCCCCTTTTCAAAAA 58.726 30.769 0.00 0.00 0.00 1.94
669 671 5.419760 ACGAGTTAGTTTCTGGAAAAAGC 57.580 39.130 0.00 0.00 31.33 3.51
690 692 0.248702 GAGGCTAGCGGAGAGAAACG 60.249 60.000 9.00 0.00 0.00 3.60
691 693 1.227002 GGCTAGCGGAGAGAAACGG 60.227 63.158 9.00 0.00 0.00 4.44
692 694 1.664321 GGCTAGCGGAGAGAAACGGA 61.664 60.000 9.00 0.00 0.00 4.69
791 813 5.835113 AATAAAGCAATGGAGCACGTTAT 57.165 34.783 0.00 0.00 36.85 1.89
870 892 1.583495 CGATCCGATTCGATCCCCGA 61.583 60.000 7.83 0.00 46.94 5.14
904 926 0.956633 TCGGGGTGATAGCGATACAC 59.043 55.000 5.27 5.27 0.00 2.90
994 1020 4.584518 CCTGCACTGCACCACCCA 62.585 66.667 0.00 0.00 33.79 4.51
1050 1084 1.273324 ACCCTCTCGGTTCTTCCATCT 60.273 52.381 0.00 0.00 45.36 2.90
1057 1091 2.637872 TCGGTTCTTCCATCTCCTGTTT 59.362 45.455 0.00 0.00 35.57 2.83
1457 1491 2.030981 GGTGCGTAGTTAGCTAGCTAGG 60.031 54.545 24.66 24.66 35.28 3.02
1587 1634 7.383572 CGCTCATCTGCATATTTCTACTAGTTT 59.616 37.037 0.00 0.00 0.00 2.66
1588 1635 8.494347 GCTCATCTGCATATTTCTACTAGTTTG 58.506 37.037 0.00 0.00 0.00 2.93
1589 1636 9.539825 CTCATCTGCATATTTCTACTAGTTTGT 57.460 33.333 0.00 0.00 0.00 2.83
1590 1637 9.317936 TCATCTGCATATTTCTACTAGTTTGTG 57.682 33.333 0.00 0.00 0.00 3.33
1591 1638 9.102757 CATCTGCATATTTCTACTAGTTTGTGT 57.897 33.333 0.00 0.00 0.00 3.72
1592 1639 8.479313 TCTGCATATTTCTACTAGTTTGTGTG 57.521 34.615 0.00 0.00 0.00 3.82
1593 1640 8.094548 TCTGCATATTTCTACTAGTTTGTGTGT 58.905 33.333 0.00 0.00 0.00 3.72
1594 1641 8.028540 TGCATATTTCTACTAGTTTGTGTGTG 57.971 34.615 0.00 0.00 0.00 3.82
1595 1642 7.659799 TGCATATTTCTACTAGTTTGTGTGTGT 59.340 33.333 0.00 0.00 0.00 3.72
1596 1643 7.957484 GCATATTTCTACTAGTTTGTGTGTGTG 59.043 37.037 0.00 0.00 0.00 3.82
1597 1644 8.988934 CATATTTCTACTAGTTTGTGTGTGTGT 58.011 33.333 0.00 0.00 0.00 3.72
1598 1645 6.656314 TTTCTACTAGTTTGTGTGTGTGTG 57.344 37.500 0.00 0.00 0.00 3.82
1599 1646 5.333299 TCTACTAGTTTGTGTGTGTGTGT 57.667 39.130 0.00 0.00 0.00 3.72
1600 1647 5.106442 TCTACTAGTTTGTGTGTGTGTGTG 58.894 41.667 0.00 0.00 0.00 3.82
1601 1648 3.670625 ACTAGTTTGTGTGTGTGTGTGT 58.329 40.909 0.00 0.00 0.00 3.72
1602 1649 2.987413 AGTTTGTGTGTGTGTGTGTG 57.013 45.000 0.00 0.00 0.00 3.82
1603 1650 2.226330 AGTTTGTGTGTGTGTGTGTGT 58.774 42.857 0.00 0.00 0.00 3.72
1604 1651 2.031245 AGTTTGTGTGTGTGTGTGTGTG 60.031 45.455 0.00 0.00 0.00 3.82
1605 1652 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
1606 1653 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1607 1654 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1608 1655 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1609 1656 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1610 1657 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1611 1658 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
1612 1659 0.957888 TGTGTGTGTGTGTGTGTGGG 60.958 55.000 0.00 0.00 0.00 4.61
1613 1660 0.958382 GTGTGTGTGTGTGTGTGGGT 60.958 55.000 0.00 0.00 0.00 4.51
1614 1661 0.957888 TGTGTGTGTGTGTGTGGGTG 60.958 55.000 0.00 0.00 0.00 4.61
1615 1662 0.958382 GTGTGTGTGTGTGTGGGTGT 60.958 55.000 0.00 0.00 0.00 4.16
1616 1663 0.957888 TGTGTGTGTGTGTGGGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
1617 1664 0.958382 GTGTGTGTGTGTGGGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
1618 1665 0.957888 TGTGTGTGTGTGGGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
1619 1666 0.958382 GTGTGTGTGTGGGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
1620 1667 0.957888 TGTGTGTGTGGGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
1621 1668 0.958382 GTGTGTGTGGGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
1622 1669 0.957888 TGTGTGTGGGTGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
1623 1670 0.958382 GTGTGTGGGTGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
1624 1671 0.957888 TGTGTGGGTGTGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
1625 1672 0.958382 GTGTGGGTGTGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
1626 1673 0.957888 TGTGGGTGTGTGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
1627 1674 0.958382 GTGGGTGTGTGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
1628 1675 0.957888 TGGGTGTGTGTGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
1629 1676 0.958382 GGGTGTGTGTGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
1630 1677 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
1631 1678 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1632 1679 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1636 1683 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1701 1765 9.802039 ATATTTGTGAACTAGGTGGAGTTTTTA 57.198 29.630 0.00 0.00 39.79 1.52
1717 1785 6.535150 GGAGTTTTTATTTGCCTTTATGAGCC 59.465 38.462 0.00 0.00 0.00 4.70
1730 1798 9.542462 TGCCTTTATGAGCCGAATTATATATAC 57.458 33.333 0.00 0.00 0.00 1.47
1761 1829 4.160814 TGATTTGCTGAGATTTTCCCATGG 59.839 41.667 4.14 4.14 0.00 3.66
1801 1869 4.412207 GTCAGACAAGTTTTGTGTCCAAC 58.588 43.478 0.00 0.00 45.39 3.77
1808 1876 3.345414 AGTTTTGTGTCCAACGGTGTTA 58.655 40.909 0.00 0.00 0.00 2.41
1842 1912 7.470009 GCCCCTTGATATAATGTACCAAACTTG 60.470 40.741 0.00 0.00 0.00 3.16
2096 2184 7.094805 TGTGAACTATACAAGATGTGAAAAGGC 60.095 37.037 0.00 0.00 0.00 4.35
2105 2193 7.765307 ACAAGATGTGAAAAGGCAGTATTATG 58.235 34.615 0.00 0.00 0.00 1.90
2118 2208 4.681942 GCAGTATTATGTCACACCGATCTC 59.318 45.833 0.00 0.00 0.00 2.75
2306 2567 0.976641 AGTAGTGTGCAAGCTAGGCA 59.023 50.000 8.77 8.77 39.32 4.75
2340 2605 9.996554 ATGGATACGATATGATACTTTTCACAA 57.003 29.630 0.00 0.00 42.51 3.33
2459 4257 2.543653 GGTTGGAGTGTGCATGTGAAAC 60.544 50.000 0.00 0.00 37.35 2.78
2474 4272 3.520381 GTGAAACAACCCACTGCAGTGA 61.520 50.000 41.50 19.99 42.41 3.41
2475 4273 5.330842 GTGAAACAACCCACTGCAGTGAG 62.331 52.174 41.50 33.67 42.41 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 5.070580 GCAACACTATAGGGAGGATACAAGT 59.929 44.000 9.55 0.00 41.41 3.16
129 130 8.457261 GTTCTAAATCTATGATCAATCCCATGC 58.543 37.037 0.00 0.00 0.00 4.06
144 145 6.381420 CCACCCTGAGAAGAGTTCTAAATCTA 59.619 42.308 0.00 0.00 40.87 1.98
147 148 4.226168 CCCACCCTGAGAAGAGTTCTAAAT 59.774 45.833 0.00 0.00 40.87 1.40
258 260 2.092753 ACGAAGAGTCCCGGTACATCTA 60.093 50.000 0.00 0.00 0.00 1.98
338 340 1.144057 CTCGCCGTAGCCTCCAATT 59.856 57.895 0.00 0.00 34.57 2.32
408 410 4.443394 GTCCGTATAACGCTTAATGTGGAG 59.557 45.833 0.00 0.00 40.91 3.86
418 420 3.881688 ACATGTAGAGTCCGTATAACGCT 59.118 43.478 0.00 0.00 40.91 5.07
489 491 5.720371 AACTAATATGCACACAGCCAAAA 57.280 34.783 0.00 0.00 44.83 2.44
505 507 3.039011 ACCCGACCTCTGCATAACTAAT 58.961 45.455 0.00 0.00 0.00 1.73
575 577 8.629158 ACAATTTATGTTACGCCAATATGTCAT 58.371 29.630 0.00 0.00 40.06 3.06
576 578 7.990917 ACAATTTATGTTACGCCAATATGTCA 58.009 30.769 0.00 0.00 40.06 3.58
669 671 1.107114 TTTCTCTCCGCTAGCCTCTG 58.893 55.000 9.66 0.00 0.00 3.35
690 692 1.305219 TATGCAACCTGCTGCGTTCC 61.305 55.000 0.00 0.00 45.74 3.62
691 693 0.734889 ATATGCAACCTGCTGCGTTC 59.265 50.000 0.00 0.00 45.74 3.95
692 694 0.452987 CATATGCAACCTGCTGCGTT 59.547 50.000 0.00 0.00 45.74 4.84
767 789 4.096732 ACGTGCTCCATTGCTTTATTTC 57.903 40.909 0.00 0.00 0.00 2.17
791 813 4.605640 TGGATACGATCAATGATGAGCA 57.394 40.909 0.00 0.00 42.11 4.26
795 817 6.359480 CATCCATGGATACGATCAATGATG 57.641 41.667 26.87 7.81 42.23 3.07
870 892 1.827969 CCCCGATTCTGACTTCTGAGT 59.172 52.381 0.00 0.00 39.32 3.41
1050 1084 4.059511 TCGCTAATTCGAAACAAACAGGA 58.940 39.130 0.00 0.00 35.31 3.86
1057 1091 3.183574 CACACACTCGCTAATTCGAAACA 59.816 43.478 0.00 0.00 38.08 2.83
1533 1575 8.651389 ACGTAGACATATACTACTAACCCAGTA 58.349 37.037 13.60 0.00 38.80 2.74
1535 1577 7.976135 ACGTAGACATATACTACTAACCCAG 57.024 40.000 13.60 3.78 38.31 4.45
1587 1634 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1588 1635 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1589 1636 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1590 1637 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1591 1638 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1592 1639 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
1593 1640 0.957888 CCCACACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
1594 1641 0.958382 ACCCACACACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
1595 1642 0.957888 CACCCACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
1596 1643 0.958382 ACACCCACACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
1597 1644 0.957888 CACACCCACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
1598 1645 0.958382 ACACACCCACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
1599 1646 0.957888 CACACACCCACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
1600 1647 0.958382 ACACACACCCACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
1601 1648 0.957888 CACACACACCCACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
1602 1649 0.958382 ACACACACACCCACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
1603 1650 0.957888 CACACACACACCCACACACA 60.958 55.000 0.00 0.00 0.00 3.72
1604 1651 0.958382 ACACACACACACCCACACAC 60.958 55.000 0.00 0.00 0.00 3.82
1605 1652 0.957888 CACACACACACACCCACACA 60.958 55.000 0.00 0.00 0.00 3.72
1606 1653 0.958382 ACACACACACACACCCACAC 60.958 55.000 0.00 0.00 0.00 3.82
1607 1654 0.957888 CACACACACACACACCCACA 60.958 55.000 0.00 0.00 0.00 4.17
1608 1655 0.958382 ACACACACACACACACCCAC 60.958 55.000 0.00 0.00 0.00 4.61
1609 1656 0.957888 CACACACACACACACACCCA 60.958 55.000 0.00 0.00 0.00 4.51
1610 1657 0.958382 ACACACACACACACACACCC 60.958 55.000 0.00 0.00 0.00 4.61
1611 1658 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
1612 1659 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1613 1660 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1614 1661 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1615 1662 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1616 1663 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1617 1664 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1618 1665 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1619 1666 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1620 1667 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1621 1668 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1622 1669 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1623 1670 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1624 1671 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1625 1672 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1626 1673 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1627 1674 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
1628 1675 1.152510 TGACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
1629 1676 1.533299 GTTGACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
1630 1677 1.463363 CGTTGACACACACACACACAC 60.463 52.381 0.00 0.00 0.00 3.82
1631 1678 0.793250 CGTTGACACACACACACACA 59.207 50.000 0.00 0.00 0.00 3.72
1632 1679 0.096281 CCGTTGACACACACACACAC 59.904 55.000 0.00 0.00 0.00 3.82
1636 1683 1.079875 ACGACCGTTGACACACACAC 61.080 55.000 0.00 0.00 0.00 3.82
1730 1798 1.536766 TCTCAGCAAATCAACCAAGCG 59.463 47.619 0.00 0.00 0.00 4.68
1761 1829 7.681903 TGTCTGACGTAAAAGAAAAGAACTTC 58.318 34.615 2.98 0.00 0.00 3.01
1801 1869 1.437160 GGGCCATGCATTAACACCG 59.563 57.895 4.39 0.00 0.00 4.94
1808 1876 2.708037 ATATCAAGGGGCCATGCATT 57.292 45.000 4.39 0.00 0.00 3.56
1866 1936 4.676723 GCGTTACATTTTGCATGGTACCAT 60.677 41.667 22.23 22.23 37.08 3.55
1867 1937 3.366476 GCGTTACATTTTGCATGGTACCA 60.366 43.478 18.99 18.99 0.00 3.25
1869 1939 3.827625 TGCGTTACATTTTGCATGGTAC 58.172 40.909 0.00 0.00 31.31 3.34
1925 2012 7.543947 AATTTTTCTTTTGCCTCTGTTTCAG 57.456 32.000 0.00 0.00 0.00 3.02
2096 2184 4.912187 CGAGATCGGTGTGACATAATACTG 59.088 45.833 0.00 0.00 35.37 2.74
2105 2193 0.179161 CCAGTCGAGATCGGTGTGAC 60.179 60.000 1.91 0.00 40.29 3.67
2118 2208 1.372087 GATGGAGCCAAAGCCAGTCG 61.372 60.000 0.00 0.00 41.25 4.18
2252 2348 9.303116 TGTTGTATATGGATGGTGTTTTACTTT 57.697 29.630 0.00 0.00 0.00 2.66
2253 2349 8.736244 GTGTTGTATATGGATGGTGTTTTACTT 58.264 33.333 0.00 0.00 0.00 2.24
2254 2350 7.065324 CGTGTTGTATATGGATGGTGTTTTACT 59.935 37.037 0.00 0.00 0.00 2.24
2255 2351 7.184106 CGTGTTGTATATGGATGGTGTTTTAC 58.816 38.462 0.00 0.00 0.00 2.01
2256 2352 6.316640 CCGTGTTGTATATGGATGGTGTTTTA 59.683 38.462 0.00 0.00 0.00 1.52
2257 2353 5.124776 CCGTGTTGTATATGGATGGTGTTTT 59.875 40.000 0.00 0.00 0.00 2.43
2306 2567 4.773013 TCATATCGTATCCATGCATGCAT 58.227 39.130 27.46 27.46 37.08 3.96
2340 2605 8.990163 TGTGGAAAGTTCTTACCTCTTTTTAT 57.010 30.769 0.00 0.00 32.59 1.40
2342 2607 7.898014 ATGTGGAAAGTTCTTACCTCTTTTT 57.102 32.000 0.00 0.00 32.59 1.94
2350 4148 5.562890 GCACCTGAATGTGGAAAGTTCTTAC 60.563 44.000 0.00 0.00 36.73 2.34
2351 4149 4.518970 GCACCTGAATGTGGAAAGTTCTTA 59.481 41.667 0.00 0.00 36.73 2.10
2459 4257 0.394192 TCTCTCACTGCAGTGGGTTG 59.606 55.000 38.69 31.38 46.33 3.77
2461 4259 4.627394 TCTCTCACTGCAGTGGGT 57.373 55.556 38.69 8.66 46.33 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.