Multiple sequence alignment - TraesCS7B01G031900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G031900 chr7B 100.000 6012 0 0 1 6012 32102268 32096257 0.000000e+00 11103.0
1 TraesCS7B01G031900 chr7A 88.812 3450 191 73 683 4085 84749212 84745911 0.000000e+00 4052.0
2 TraesCS7B01G031900 chr7A 90.452 1173 83 11 4147 5317 84745691 84744546 0.000000e+00 1519.0
3 TraesCS7B01G031900 chr7A 87.017 362 40 7 5654 6012 84743902 84743545 9.390000e-108 401.0
4 TraesCS7B01G031900 chr7A 88.701 177 17 2 380 554 6316835 6316660 4.720000e-51 213.0
5 TraesCS7B01G031900 chr7A 82.857 245 27 6 5358 5599 84744148 84743916 7.900000e-49 206.0
6 TraesCS7B01G031900 chr7A 93.407 91 5 1 36 125 84750026 84749936 3.780000e-27 134.0
7 TraesCS7B01G031900 chr7A 97.826 46 1 0 1 46 84750095 84750050 4.990000e-11 80.5
8 TraesCS7B01G031900 chr7D 93.967 1094 60 5 2130 3221 82862325 82861236 0.000000e+00 1650.0
9 TraesCS7B01G031900 chr7D 88.529 1421 58 27 692 2071 82863804 82862448 0.000000e+00 1624.0
10 TraesCS7B01G031900 chr7D 93.801 984 51 7 3696 4676 82860661 82859685 0.000000e+00 1471.0
11 TraesCS7B01G031900 chr7D 88.346 901 77 14 4674 5567 82859651 82858772 0.000000e+00 1057.0
12 TraesCS7B01G031900 chr7D 85.440 364 46 5 5654 6012 82857895 82857534 7.360000e-99 372.0
13 TraesCS7B01G031900 chr7D 85.050 301 28 9 3221 3521 82861178 82860895 2.120000e-74 291.0
14 TraesCS7B01G031900 chr7D 97.500 40 1 0 2089 2128 82862448 82862409 1.080000e-07 69.4
15 TraesCS7B01G031900 chr1D 90.643 171 14 1 382 550 81276521 81276351 6.060000e-55 226.0
16 TraesCS7B01G031900 chr1D 87.701 187 19 4 366 550 393753269 393753453 1.310000e-51 215.0
17 TraesCS7B01G031900 chr6D 90.533 169 14 1 384 550 453001382 453001214 7.840000e-54 222.0
18 TraesCS7B01G031900 chr6D 83.871 62 7 3 5829 5888 462535386 462535326 8.420000e-04 56.5
19 TraesCS7B01G031900 chr4B 90.173 173 14 2 384 554 363655196 363655367 7.840000e-54 222.0
20 TraesCS7B01G031900 chr2B 89.655 174 15 2 378 549 47421610 47421782 1.010000e-52 219.0
21 TraesCS7B01G031900 chr2D 87.634 186 21 1 375 558 161907025 161906840 1.310000e-51 215.0
22 TraesCS7B01G031900 chr3B 87.568 185 19 4 363 546 115783723 115783542 1.700000e-50 211.0
23 TraesCS7B01G031900 chr3B 92.308 65 4 1 5818 5881 305537570 305537506 2.310000e-14 91.6
24 TraesCS7B01G031900 chr3B 83.562 73 8 4 5819 5888 685256699 685256628 1.400000e-06 65.8
25 TraesCS7B01G031900 chr4D 86.070 201 21 5 353 547 74373094 74373293 6.110000e-50 209.0
26 TraesCS7B01G031900 chr1A 86.364 66 6 3 5829 5892 557480124 557480060 1.080000e-07 69.4
27 TraesCS7B01G031900 chr3A 83.333 72 9 3 5819 5889 686255472 686255541 5.030000e-06 63.9
28 TraesCS7B01G031900 chrUn 85.484 62 6 3 5829 5888 95223188 95223248 1.810000e-05 62.1
29 TraesCS7B01G031900 chrUn 100.000 28 0 0 348 375 371076269 371076296 1.100000e-02 52.8
30 TraesCS7B01G031900 chr1B 84.375 64 6 4 5829 5889 429278254 429278192 6.510000e-05 60.2
31 TraesCS7B01G031900 chr4A 100.000 28 0 0 348 375 733438400 733438373 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G031900 chr7B 32096257 32102268 6011 True 11103.000000 11103 100.000000 1 6012 1 chr7B.!!$R1 6011
1 TraesCS7B01G031900 chr7A 84743545 84750095 6550 True 1065.416667 4052 90.061833 1 6012 6 chr7A.!!$R2 6011
2 TraesCS7B01G031900 chr7D 82857534 82863804 6270 True 933.485714 1650 90.376143 692 6012 7 chr7D.!!$R1 5320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 385 0.107017 CTCGGACGGAGGGGTAGTAA 60.107 60.0 2.13 0.0 39.22 2.24 F
1034 1415 0.179234 TCGCTCTCTGACTCGATCCT 59.821 55.0 0.00 0.0 0.00 3.24 F
1040 1421 0.183971 TCTGACTCGATCCTCCTCCC 59.816 60.0 0.00 0.0 0.00 4.30 F
1041 1422 0.184933 CTGACTCGATCCTCCTCCCT 59.815 60.0 0.00 0.0 0.00 4.20 F
1042 1423 0.183971 TGACTCGATCCTCCTCCCTC 59.816 60.0 0.00 0.0 0.00 4.30 F
1043 1424 0.538746 GACTCGATCCTCCTCCCTCC 60.539 65.0 0.00 0.0 0.00 4.30 F
1165 1550 0.612732 CCATCCAAAGCCAGCTTCCA 60.613 55.0 5.17 0.0 34.84 3.53 F
1466 1855 0.802222 CCATGTCTACGACGCAGGTG 60.802 60.0 0.00 0.0 34.95 4.00 F
2179 2692 0.875059 CTTCGGTTCAGGGAGCAAAC 59.125 55.0 0.00 0.0 0.00 2.93 F
3638 4303 0.323999 TTCGTCCCTGCCTAGCTACA 60.324 55.0 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1664 1.288752 CCACCACCAAATTCCGTGC 59.711 57.895 0.38 0.00 0.00 5.34 R
2542 3057 1.419762 ACCCCAAACTGGAAATTTGCC 59.580 47.619 7.27 3.75 40.96 4.52 R
2799 3314 1.467920 GCTCAATCCACCCCTTGAAG 58.532 55.000 0.00 0.00 31.40 3.02 R
2979 3494 2.722094 ACTTCCGCCTGCAAATTGATA 58.278 42.857 0.00 0.00 0.00 2.15 R
3072 3587 5.829391 TGCCATGAATTCATATACAAGCAGT 59.171 36.000 20.32 0.00 34.26 4.40 R
3174 3689 7.549134 CAGCACTCAATGTAGGAATACTAAACA 59.451 37.037 0.00 0.00 32.37 2.83 R
3211 3726 5.709631 TCAGTACATTGGCTCAAATAAAGCA 59.290 36.000 0.00 0.00 41.66 3.91 R
3448 4022 2.057140 AGGCATGCATACCAGATACCA 58.943 47.619 21.36 0.00 0.00 3.25 R
4300 5126 0.874607 ACACGTCGCTCTTGGTTGTC 60.875 55.000 0.00 0.00 0.00 3.18 R
5492 6720 0.107643 GGCCTACTCAAGATCCAGCC 59.892 60.000 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 84 3.930229 TCAATAACGATGCACCAGTACAC 59.070 43.478 0.00 0.00 0.00 2.90
89 124 5.410746 GGCTTAACTGTAGTTTAGACCCAAC 59.589 44.000 13.25 0.00 36.87 3.77
101 136 3.367646 AGACCCAACGAGTAGATCTCA 57.632 47.619 0.00 0.00 42.88 3.27
102 137 3.698289 AGACCCAACGAGTAGATCTCAA 58.302 45.455 0.00 0.00 42.88 3.02
103 138 3.444388 AGACCCAACGAGTAGATCTCAAC 59.556 47.826 0.00 0.00 42.88 3.18
125 161 7.281549 TCAACTTGAAACTTAAACTCACCTACC 59.718 37.037 0.00 0.00 0.00 3.18
126 162 6.896883 ACTTGAAACTTAAACTCACCTACCT 58.103 36.000 0.00 0.00 0.00 3.08
127 163 8.026396 ACTTGAAACTTAAACTCACCTACCTA 57.974 34.615 0.00 0.00 0.00 3.08
128 164 7.930325 ACTTGAAACTTAAACTCACCTACCTAC 59.070 37.037 0.00 0.00 0.00 3.18
129 165 7.607615 TGAAACTTAAACTCACCTACCTACT 57.392 36.000 0.00 0.00 0.00 2.57
130 166 8.710749 TGAAACTTAAACTCACCTACCTACTA 57.289 34.615 0.00 0.00 0.00 1.82
131 167 8.579863 TGAAACTTAAACTCACCTACCTACTAC 58.420 37.037 0.00 0.00 0.00 2.73
132 168 8.718158 AAACTTAAACTCACCTACCTACTACT 57.282 34.615 0.00 0.00 0.00 2.57
133 169 7.936496 ACTTAAACTCACCTACCTACTACTC 57.064 40.000 0.00 0.00 0.00 2.59
134 170 6.889177 ACTTAAACTCACCTACCTACTACTCC 59.111 42.308 0.00 0.00 0.00 3.85
136 172 5.469210 AACTCACCTACCTACTACTCCAT 57.531 43.478 0.00 0.00 0.00 3.41
137 173 5.051409 ACTCACCTACCTACTACTCCATC 57.949 47.826 0.00 0.00 0.00 3.51
138 174 4.141205 ACTCACCTACCTACTACTCCATCC 60.141 50.000 0.00 0.00 0.00 3.51
139 175 3.147629 CACCTACCTACTACTCCATCCG 58.852 54.545 0.00 0.00 0.00 4.18
140 176 2.782341 ACCTACCTACTACTCCATCCGT 59.218 50.000 0.00 0.00 0.00 4.69
141 177 3.203934 ACCTACCTACTACTCCATCCGTT 59.796 47.826 0.00 0.00 0.00 4.44
142 178 3.819902 CCTACCTACTACTCCATCCGTTC 59.180 52.174 0.00 0.00 0.00 3.95
143 179 2.664015 ACCTACTACTCCATCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
144 180 1.962100 CCTACTACTCCATCCGTTCCC 59.038 57.143 0.00 0.00 0.00 3.97
146 182 1.777941 ACTACTCCATCCGTTCCCTC 58.222 55.000 0.00 0.00 0.00 4.30
147 183 1.041437 CTACTCCATCCGTTCCCTCC 58.959 60.000 0.00 0.00 0.00 4.30
149 185 3.447025 CTCCATCCGTTCCCTCCGC 62.447 68.421 0.00 0.00 0.00 5.54
150 186 4.547367 CCATCCGTTCCCTCCGCC 62.547 72.222 0.00 0.00 0.00 6.13
174 210 5.589050 CCCCCTAAAAAGAAAGACTAATCCG 59.411 44.000 0.00 0.00 0.00 4.18
175 211 5.589050 CCCCTAAAAAGAAAGACTAATCCGG 59.411 44.000 0.00 0.00 0.00 5.14
176 212 5.066117 CCCTAAAAAGAAAGACTAATCCGGC 59.934 44.000 0.00 0.00 0.00 6.13
177 213 5.880887 CCTAAAAAGAAAGACTAATCCGGCT 59.119 40.000 0.00 0.00 0.00 5.52
179 215 6.986904 AAAAAGAAAGACTAATCCGGCTAG 57.013 37.500 0.00 2.33 0.00 3.42
180 216 5.934402 AAAGAAAGACTAATCCGGCTAGA 57.066 39.130 15.14 0.00 0.00 2.43
181 217 4.922471 AGAAAGACTAATCCGGCTAGAC 57.078 45.455 15.14 10.04 0.00 2.59
184 220 5.766174 AGAAAGACTAATCCGGCTAGACTAG 59.234 44.000 15.14 5.03 0.00 2.57
185 221 4.710313 AGACTAATCCGGCTAGACTAGT 57.290 45.455 15.14 0.00 0.00 2.57
186 222 5.822132 AGACTAATCCGGCTAGACTAGTA 57.178 43.478 15.14 0.00 0.00 1.82
187 223 5.550290 AGACTAATCCGGCTAGACTAGTAC 58.450 45.833 15.14 4.17 0.00 2.73
188 224 5.071519 AGACTAATCCGGCTAGACTAGTACA 59.928 44.000 15.14 0.00 0.00 2.90
189 225 5.307204 ACTAATCCGGCTAGACTAGTACAG 58.693 45.833 15.14 0.00 0.00 2.74
190 226 3.860968 ATCCGGCTAGACTAGTACAGT 57.139 47.619 11.15 0.00 41.47 3.55
191 227 4.970860 ATCCGGCTAGACTAGTACAGTA 57.029 45.455 11.15 0.00 37.72 2.74
192 228 4.970860 TCCGGCTAGACTAGTACAGTAT 57.029 45.455 11.15 0.00 37.72 2.12
193 229 4.639334 TCCGGCTAGACTAGTACAGTATG 58.361 47.826 11.15 0.00 46.00 2.39
228 264 7.956420 TTTATAGAAGAAAACTTCGTGAGCA 57.044 32.000 0.00 0.00 38.31 4.26
229 265 8.547967 TTTATAGAAGAAAACTTCGTGAGCAT 57.452 30.769 0.00 0.00 38.31 3.79
230 266 4.999751 AGAAGAAAACTTCGTGAGCATC 57.000 40.909 0.00 0.00 38.31 3.91
231 267 4.380531 AGAAGAAAACTTCGTGAGCATCA 58.619 39.130 0.00 0.00 39.69 3.07
258 294 2.910688 AAGCCGAGACTTGAACTTGA 57.089 45.000 0.00 0.00 0.00 3.02
259 295 3.409026 AAGCCGAGACTTGAACTTGAT 57.591 42.857 0.00 0.00 0.00 2.57
260 296 2.693069 AGCCGAGACTTGAACTTGATG 58.307 47.619 0.00 0.00 0.00 3.07
261 297 1.734465 GCCGAGACTTGAACTTGATGG 59.266 52.381 0.00 0.00 0.00 3.51
262 298 2.350522 CCGAGACTTGAACTTGATGGG 58.649 52.381 0.00 0.00 0.00 4.00
263 299 1.734465 CGAGACTTGAACTTGATGGGC 59.266 52.381 0.00 0.00 0.00 5.36
264 300 2.613977 CGAGACTTGAACTTGATGGGCT 60.614 50.000 0.00 0.00 0.00 5.19
265 301 2.746362 GAGACTTGAACTTGATGGGCTG 59.254 50.000 0.00 0.00 0.00 4.85
266 302 1.815003 GACTTGAACTTGATGGGCTGG 59.185 52.381 0.00 0.00 0.00 4.85
267 303 0.529378 CTTGAACTTGATGGGCTGGC 59.471 55.000 0.00 0.00 0.00 4.85
268 304 0.112995 TTGAACTTGATGGGCTGGCT 59.887 50.000 0.00 0.00 0.00 4.75
269 305 0.609957 TGAACTTGATGGGCTGGCTG 60.610 55.000 0.00 0.00 0.00 4.85
270 306 1.941999 GAACTTGATGGGCTGGCTGC 61.942 60.000 7.96 7.96 41.94 5.25
271 307 3.515286 CTTGATGGGCTGGCTGCG 61.515 66.667 10.35 0.00 44.05 5.18
272 308 3.982316 CTTGATGGGCTGGCTGCGA 62.982 63.158 10.35 0.00 44.05 5.10
273 309 3.565961 TTGATGGGCTGGCTGCGAA 62.566 57.895 10.35 1.23 44.05 4.70
274 310 3.512516 GATGGGCTGGCTGCGAAC 61.513 66.667 10.35 4.08 44.05 3.95
275 311 3.984193 GATGGGCTGGCTGCGAACT 62.984 63.158 10.35 0.00 44.05 3.01
276 312 3.984193 ATGGGCTGGCTGCGAACTC 62.984 63.158 10.35 0.00 44.05 3.01
288 324 3.119096 GAACTCCCGCGGCTTGTC 61.119 66.667 22.85 10.59 0.00 3.18
289 325 3.876589 GAACTCCCGCGGCTTGTCA 62.877 63.158 22.85 0.00 0.00 3.58
290 326 3.469863 AACTCCCGCGGCTTGTCAA 62.470 57.895 22.85 0.00 0.00 3.18
291 327 3.423154 CTCCCGCGGCTTGTCAAC 61.423 66.667 22.85 0.00 0.00 3.18
292 328 3.883744 CTCCCGCGGCTTGTCAACT 62.884 63.158 22.85 0.00 0.00 3.16
293 329 3.726517 CCCGCGGCTTGTCAACTG 61.727 66.667 22.85 0.00 0.00 3.16
294 330 2.664851 CCGCGGCTTGTCAACTGA 60.665 61.111 14.67 0.00 0.00 3.41
295 331 2.671177 CCGCGGCTTGTCAACTGAG 61.671 63.158 14.67 0.00 0.00 3.35
296 332 1.664649 CGCGGCTTGTCAACTGAGA 60.665 57.895 0.00 0.00 0.00 3.27
297 333 1.016130 CGCGGCTTGTCAACTGAGAT 61.016 55.000 0.00 0.00 0.00 2.75
298 334 1.735700 CGCGGCTTGTCAACTGAGATA 60.736 52.381 0.00 0.00 0.00 1.98
299 335 1.661112 GCGGCTTGTCAACTGAGATAC 59.339 52.381 0.00 0.00 0.00 2.24
300 336 1.920574 CGGCTTGTCAACTGAGATACG 59.079 52.381 0.00 0.00 0.00 3.06
301 337 1.661112 GGCTTGTCAACTGAGATACGC 59.339 52.381 0.00 0.00 0.00 4.42
302 338 2.611518 GCTTGTCAACTGAGATACGCT 58.388 47.619 0.00 0.00 0.00 5.07
303 339 2.600867 GCTTGTCAACTGAGATACGCTC 59.399 50.000 0.00 0.00 44.21 5.03
314 350 3.449632 GAGATACGCTCAGTTTTCCTCC 58.550 50.000 0.00 0.00 43.38 4.30
315 351 2.168728 AGATACGCTCAGTTTTCCTCCC 59.831 50.000 0.00 0.00 0.00 4.30
316 352 1.640917 TACGCTCAGTTTTCCTCCCT 58.359 50.000 0.00 0.00 0.00 4.20
317 353 0.765510 ACGCTCAGTTTTCCTCCCTT 59.234 50.000 0.00 0.00 0.00 3.95
318 354 1.143073 ACGCTCAGTTTTCCTCCCTTT 59.857 47.619 0.00 0.00 0.00 3.11
319 355 1.537202 CGCTCAGTTTTCCTCCCTTTG 59.463 52.381 0.00 0.00 0.00 2.77
320 356 2.587522 GCTCAGTTTTCCTCCCTTTGT 58.412 47.619 0.00 0.00 0.00 2.83
321 357 2.959030 GCTCAGTTTTCCTCCCTTTGTT 59.041 45.455 0.00 0.00 0.00 2.83
322 358 3.004839 GCTCAGTTTTCCTCCCTTTGTTC 59.995 47.826 0.00 0.00 0.00 3.18
323 359 4.207165 CTCAGTTTTCCTCCCTTTGTTCA 58.793 43.478 0.00 0.00 0.00 3.18
324 360 4.605183 TCAGTTTTCCTCCCTTTGTTCAA 58.395 39.130 0.00 0.00 0.00 2.69
325 361 4.644685 TCAGTTTTCCTCCCTTTGTTCAAG 59.355 41.667 0.00 0.00 0.00 3.02
326 362 4.402474 CAGTTTTCCTCCCTTTGTTCAAGT 59.598 41.667 0.00 0.00 0.00 3.16
327 363 5.023452 AGTTTTCCTCCCTTTGTTCAAGTT 58.977 37.500 0.00 0.00 0.00 2.66
328 364 5.483937 AGTTTTCCTCCCTTTGTTCAAGTTT 59.516 36.000 0.00 0.00 0.00 2.66
329 365 6.013725 AGTTTTCCTCCCTTTGTTCAAGTTTT 60.014 34.615 0.00 0.00 0.00 2.43
330 366 5.592104 TTCCTCCCTTTGTTCAAGTTTTC 57.408 39.130 0.00 0.00 0.00 2.29
331 367 4.867086 TCCTCCCTTTGTTCAAGTTTTCT 58.133 39.130 0.00 0.00 0.00 2.52
332 368 4.887655 TCCTCCCTTTGTTCAAGTTTTCTC 59.112 41.667 0.00 0.00 0.00 2.87
333 369 4.261197 CCTCCCTTTGTTCAAGTTTTCTCG 60.261 45.833 0.00 0.00 0.00 4.04
334 370 3.630312 TCCCTTTGTTCAAGTTTTCTCGG 59.370 43.478 0.00 0.00 0.00 4.63
335 371 3.630312 CCCTTTGTTCAAGTTTTCTCGGA 59.370 43.478 0.00 0.00 0.00 4.55
336 372 4.497507 CCCTTTGTTCAAGTTTTCTCGGAC 60.498 45.833 0.00 0.00 0.00 4.79
337 373 3.936902 TTGTTCAAGTTTTCTCGGACG 57.063 42.857 0.00 0.00 0.00 4.79
338 374 2.206750 TGTTCAAGTTTTCTCGGACGG 58.793 47.619 0.00 0.00 0.00 4.79
339 375 2.159071 TGTTCAAGTTTTCTCGGACGGA 60.159 45.455 0.00 0.00 0.00 4.69
340 376 2.433868 TCAAGTTTTCTCGGACGGAG 57.566 50.000 3.68 3.68 44.58 4.63
341 377 1.000506 TCAAGTTTTCTCGGACGGAGG 59.999 52.381 9.88 0.00 43.34 4.30
342 378 0.320697 AAGTTTTCTCGGACGGAGGG 59.679 55.000 9.88 0.00 43.34 4.30
343 379 1.079336 GTTTTCTCGGACGGAGGGG 60.079 63.158 9.88 0.00 43.34 4.79
344 380 1.534717 TTTTCTCGGACGGAGGGGT 60.535 57.895 9.88 0.00 43.34 4.95
345 381 0.251742 TTTTCTCGGACGGAGGGGTA 60.252 55.000 9.88 0.00 43.34 3.69
346 382 0.682209 TTTCTCGGACGGAGGGGTAG 60.682 60.000 9.88 0.00 43.34 3.18
347 383 1.856539 TTCTCGGACGGAGGGGTAGT 61.857 60.000 9.88 0.00 43.34 2.73
348 384 0.982852 TCTCGGACGGAGGGGTAGTA 60.983 60.000 9.88 0.00 43.34 1.82
349 385 0.107017 CTCGGACGGAGGGGTAGTAA 60.107 60.000 2.13 0.00 39.22 2.24
350 386 0.552848 TCGGACGGAGGGGTAGTAAT 59.447 55.000 0.00 0.00 0.00 1.89
351 387 0.957362 CGGACGGAGGGGTAGTAATC 59.043 60.000 0.00 0.00 0.00 1.75
352 388 1.478288 CGGACGGAGGGGTAGTAATCT 60.478 57.143 0.00 0.00 0.00 2.40
353 389 2.224621 CGGACGGAGGGGTAGTAATCTA 60.225 54.545 0.00 0.00 0.00 1.98
354 390 3.748668 CGGACGGAGGGGTAGTAATCTAA 60.749 52.174 0.00 0.00 0.00 2.10
355 391 4.218312 GGACGGAGGGGTAGTAATCTAAA 58.782 47.826 0.00 0.00 0.00 1.85
356 392 4.038522 GGACGGAGGGGTAGTAATCTAAAC 59.961 50.000 0.00 0.00 0.00 2.01
357 393 4.613437 ACGGAGGGGTAGTAATCTAAACA 58.387 43.478 0.00 0.00 0.00 2.83
358 394 4.403752 ACGGAGGGGTAGTAATCTAAACAC 59.596 45.833 0.00 0.00 0.00 3.32
359 395 4.648307 CGGAGGGGTAGTAATCTAAACACT 59.352 45.833 0.00 0.00 0.00 3.55
360 396 5.221204 CGGAGGGGTAGTAATCTAAACACTC 60.221 48.000 0.00 0.00 36.22 3.51
361 397 5.898397 GGAGGGGTAGTAATCTAAACACTCT 59.102 44.000 0.00 0.00 36.71 3.24
362 398 6.383436 GGAGGGGTAGTAATCTAAACACTCTT 59.617 42.308 0.00 0.00 36.71 2.85
363 399 7.562821 GGAGGGGTAGTAATCTAAACACTCTTA 59.437 40.741 0.00 0.00 36.71 2.10
364 400 9.145442 GAGGGGTAGTAATCTAAACACTCTTAT 57.855 37.037 0.00 0.00 35.15 1.73
398 434 8.229253 ACATAAAAAGTACTTCCTCCGTTTTT 57.771 30.769 8.95 5.81 33.11 1.94
411 447 9.908152 CTTCCTCCGTTTTTAAATATTTGTCTT 57.092 29.630 11.05 0.00 0.00 3.01
413 449 9.902196 TCCTCCGTTTTTAAATATTTGTCTTTC 57.098 29.630 11.05 0.00 0.00 2.62
414 450 9.908152 CCTCCGTTTTTAAATATTTGTCTTTCT 57.092 29.630 11.05 0.00 0.00 2.52
428 464 8.833231 ATTTGTCTTTCTAGAGATTTCGACAA 57.167 30.769 10.14 10.14 38.08 3.18
430 466 8.833231 TTGTCTTTCTAGAGATTTCGACAAAT 57.167 30.769 11.24 0.00 37.25 2.32
431 467 8.244494 TGTCTTTCTAGAGATTTCGACAAATG 57.756 34.615 0.00 0.00 31.94 2.32
433 469 8.376942 GTCTTTCTAGAGATTTCGACAAATGAC 58.623 37.037 0.00 0.00 31.94 3.06
434 470 8.307483 TCTTTCTAGAGATTTCGACAAATGACT 58.693 33.333 0.00 0.00 31.94 3.41
436 472 8.912787 TTCTAGAGATTTCGACAAATGACTAC 57.087 34.615 0.00 0.00 31.94 2.73
437 473 8.051901 TCTAGAGATTTCGACAAATGACTACA 57.948 34.615 0.00 0.00 31.94 2.74
439 475 9.952188 CTAGAGATTTCGACAAATGACTACATA 57.048 33.333 0.00 0.00 35.50 2.29
440 476 8.635877 AGAGATTTCGACAAATGACTACATAC 57.364 34.615 0.00 0.00 35.50 2.39
442 478 7.255569 AGATTTCGACAAATGACTACATACGA 58.744 34.615 0.00 0.00 35.50 3.43
443 479 7.758076 AGATTTCGACAAATGACTACATACGAA 59.242 33.333 0.00 0.00 36.85 3.85
444 480 6.864560 TTCGACAAATGACTACATACGAAG 57.135 37.500 0.00 0.00 35.53 3.79
445 481 4.796830 TCGACAAATGACTACATACGAAGC 59.203 41.667 0.00 0.00 35.50 3.86
446 482 4.561213 CGACAAATGACTACATACGAAGCA 59.439 41.667 0.00 0.00 35.50 3.91
447 483 5.232202 CGACAAATGACTACATACGAAGCAT 59.768 40.000 0.00 0.00 35.50 3.79
448 484 6.416750 CGACAAATGACTACATACGAAGCATA 59.583 38.462 0.00 0.00 35.50 3.14
451 487 9.758651 ACAAATGACTACATACGAAGCATAATA 57.241 29.630 0.00 0.00 35.50 0.98
541 638 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
546 643 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
547 644 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
548 645 4.591321 TTTAGGAACGGAGGGAGTAGTA 57.409 45.455 0.00 0.00 0.00 1.82
550 647 1.637553 AGGAACGGAGGGAGTAGTACA 59.362 52.381 2.52 0.00 0.00 2.90
551 648 1.747924 GGAACGGAGGGAGTAGTACAC 59.252 57.143 2.52 0.00 0.00 2.90
552 649 2.440409 GAACGGAGGGAGTAGTACACA 58.560 52.381 2.52 0.00 0.00 3.72
553 650 2.592102 ACGGAGGGAGTAGTACACAA 57.408 50.000 2.52 0.00 0.00 3.33
554 651 2.444421 ACGGAGGGAGTAGTACACAAG 58.556 52.381 2.52 0.00 0.00 3.16
555 652 1.749634 CGGAGGGAGTAGTACACAAGG 59.250 57.143 2.52 0.00 0.00 3.61
557 654 2.458620 GAGGGAGTAGTACACAAGGCT 58.541 52.381 2.52 0.00 0.00 4.58
558 655 3.626729 GGAGGGAGTAGTACACAAGGCTA 60.627 52.174 2.52 0.00 0.00 3.93
559 656 3.633065 GAGGGAGTAGTACACAAGGCTAG 59.367 52.174 2.52 0.00 0.00 3.42
560 657 2.694109 GGGAGTAGTACACAAGGCTAGG 59.306 54.545 2.52 0.00 0.00 3.02
561 658 3.626729 GGGAGTAGTACACAAGGCTAGGA 60.627 52.174 2.52 0.00 0.00 2.94
562 659 3.633065 GGAGTAGTACACAAGGCTAGGAG 59.367 52.174 2.52 0.00 0.00 3.69
563 660 4.525024 GAGTAGTACACAAGGCTAGGAGA 58.475 47.826 2.52 0.00 0.00 3.71
564 661 5.132043 AGTAGTACACAAGGCTAGGAGAT 57.868 43.478 2.52 0.00 0.00 2.75
565 662 4.890581 AGTAGTACACAAGGCTAGGAGATG 59.109 45.833 2.52 0.00 0.00 2.90
568 665 5.269991 AGTACACAAGGCTAGGAGATGTAA 58.730 41.667 0.00 0.00 0.00 2.41
570 667 5.700402 ACACAAGGCTAGGAGATGTAATT 57.300 39.130 0.00 0.00 0.00 1.40
571 668 6.067217 ACACAAGGCTAGGAGATGTAATTT 57.933 37.500 0.00 0.00 0.00 1.82
572 669 6.485171 ACACAAGGCTAGGAGATGTAATTTT 58.515 36.000 0.00 0.00 0.00 1.82
573 670 6.948309 ACACAAGGCTAGGAGATGTAATTTTT 59.052 34.615 0.00 0.00 0.00 1.94
575 672 8.616076 CACAAGGCTAGGAGATGTAATTTTTAG 58.384 37.037 0.00 0.00 0.00 1.85
576 673 8.548877 ACAAGGCTAGGAGATGTAATTTTTAGA 58.451 33.333 0.00 0.00 0.00 2.10
577 674 9.566432 CAAGGCTAGGAGATGTAATTTTTAGAT 57.434 33.333 0.00 0.00 0.00 1.98
579 676 8.379331 AGGCTAGGAGATGTAATTTTTAGATCC 58.621 37.037 0.00 0.00 0.00 3.36
580 677 8.157476 GGCTAGGAGATGTAATTTTTAGATCCA 58.843 37.037 0.00 0.00 0.00 3.41
581 678 9.561069 GCTAGGAGATGTAATTTTTAGATCCAA 57.439 33.333 0.00 0.00 0.00 3.53
620 717 3.741325 GGATACCCACTGGCCACT 58.259 61.111 0.00 0.00 33.59 4.00
622 719 1.452108 GATACCCACTGGCCACTGC 60.452 63.158 0.00 0.00 33.59 4.40
644 977 2.356667 CACTTGCCCTCCCCTTCC 59.643 66.667 0.00 0.00 0.00 3.46
645 978 2.121506 ACTTGCCCTCCCCTTCCA 60.122 61.111 0.00 0.00 0.00 3.53
646 979 1.544917 ACTTGCCCTCCCCTTCCAT 60.545 57.895 0.00 0.00 0.00 3.41
761 1121 4.323477 TTCGGCCAACCTCCACCG 62.323 66.667 2.24 0.00 46.97 4.94
791 1156 4.904590 CACCGGGGGCCAACACAA 62.905 66.667 6.32 0.00 0.00 3.33
792 1157 4.906537 ACCGGGGGCCAACACAAC 62.907 66.667 6.32 0.00 0.00 3.32
793 1158 4.904590 CCGGGGGCCAACACAACA 62.905 66.667 4.39 0.00 0.00 3.33
794 1159 3.601685 CGGGGGCCAACACAACAC 61.602 66.667 4.39 0.00 0.00 3.32
795 1160 2.443016 GGGGGCCAACACAACACA 60.443 61.111 4.39 0.00 0.00 3.72
796 1161 2.791868 GGGGGCCAACACAACACAC 61.792 63.158 4.39 0.00 0.00 3.82
801 1166 0.383949 GCCAACACAACACACGGATT 59.616 50.000 0.00 0.00 0.00 3.01
1017 1398 1.063006 CACCATCAGCGCCATTTCG 59.937 57.895 2.29 0.00 0.00 3.46
1031 1412 2.223688 CCATTTCGCTCTCTGACTCGAT 60.224 50.000 0.00 0.00 0.00 3.59
1032 1413 2.834574 TTTCGCTCTCTGACTCGATC 57.165 50.000 0.00 0.00 0.00 3.69
1033 1414 1.018148 TTCGCTCTCTGACTCGATCC 58.982 55.000 0.00 0.00 0.00 3.36
1034 1415 0.179234 TCGCTCTCTGACTCGATCCT 59.821 55.000 0.00 0.00 0.00 3.24
1035 1416 0.586319 CGCTCTCTGACTCGATCCTC 59.414 60.000 0.00 0.00 0.00 3.71
1036 1417 0.951558 GCTCTCTGACTCGATCCTCC 59.048 60.000 0.00 0.00 0.00 4.30
1037 1418 1.476833 GCTCTCTGACTCGATCCTCCT 60.477 57.143 0.00 0.00 0.00 3.69
1038 1419 2.494059 CTCTCTGACTCGATCCTCCTC 58.506 57.143 0.00 0.00 0.00 3.71
1039 1420 1.142060 TCTCTGACTCGATCCTCCTCC 59.858 57.143 0.00 0.00 0.00 4.30
1040 1421 0.183971 TCTGACTCGATCCTCCTCCC 59.816 60.000 0.00 0.00 0.00 4.30
1041 1422 0.184933 CTGACTCGATCCTCCTCCCT 59.815 60.000 0.00 0.00 0.00 4.20
1042 1423 0.183971 TGACTCGATCCTCCTCCCTC 59.816 60.000 0.00 0.00 0.00 4.30
1043 1424 0.538746 GACTCGATCCTCCTCCCTCC 60.539 65.000 0.00 0.00 0.00 4.30
1080 1461 0.872388 TCCTTTCGCTTTCGCCTTTC 59.128 50.000 0.00 0.00 35.26 2.62
1081 1462 0.875059 CCTTTCGCTTTCGCCTTTCT 59.125 50.000 0.00 0.00 35.26 2.52
1105 1486 1.970917 GCGTGCGCACTTATCTGCTT 61.971 55.000 35.27 0.00 41.49 3.91
1162 1547 0.962356 CGTCCATCCAAAGCCAGCTT 60.962 55.000 0.00 0.00 37.98 3.74
1165 1550 0.612732 CCATCCAAAGCCAGCTTCCA 60.613 55.000 5.17 0.00 34.84 3.53
1188 1573 2.355481 GAACCGGTCGTGTCGCTT 60.355 61.111 8.04 0.00 0.00 4.68
1312 1701 1.144936 GTCCATGCCTCCTCCTTCG 59.855 63.158 0.00 0.00 0.00 3.79
1466 1855 0.802222 CCATGTCTACGACGCAGGTG 60.802 60.000 0.00 0.00 34.95 4.00
1542 1933 2.305927 TGGGATCTCTTTGTCTGGTTCC 59.694 50.000 0.00 0.00 0.00 3.62
1602 1996 1.529865 CGCCATGATGTGATAGCTGTG 59.470 52.381 0.00 0.00 0.00 3.66
1620 2015 4.032900 GCTGTGGTACTTGATACGATGTTG 59.967 45.833 0.00 0.00 34.22 3.33
1637 2035 0.934496 TTGTGTTCGTCGAGCAAAGG 59.066 50.000 13.63 0.00 0.00 3.11
1640 2038 1.454653 GTGTTCGTCGAGCAAAGGTAC 59.545 52.381 13.63 0.00 0.00 3.34
1647 2054 3.362693 CGTCGAGCAAAGGTACAAGAAAC 60.363 47.826 0.00 0.00 0.00 2.78
1688 2110 9.657419 AATTTTGCTTAGTATTCCCATTCTTTG 57.343 29.630 0.00 0.00 0.00 2.77
1716 2140 2.231716 TCCTGTCCTTGCTAGCAGTA 57.768 50.000 18.45 2.86 0.00 2.74
1718 2142 3.910989 TCCTGTCCTTGCTAGCAGTATA 58.089 45.455 18.45 1.62 0.00 1.47
1756 2180 2.954318 AGATTGTGCAGCACTGAACTTT 59.046 40.909 25.83 3.45 39.88 2.66
1810 2234 4.008074 TGGTTCCTGATTGAGAGTTGAC 57.992 45.455 0.00 0.00 0.00 3.18
1819 2243 6.404403 CCTGATTGAGAGTTGACCATCAATTG 60.404 42.308 0.00 0.00 41.27 2.32
1859 2283 2.711542 ACCTTGCTTATTTCACCGAGG 58.288 47.619 0.00 0.00 35.42 4.63
1860 2284 1.401905 CCTTGCTTATTTCACCGAGGC 59.598 52.381 0.00 0.00 0.00 4.70
1936 2366 4.953579 TGGGCTTGTGTCTTTAACTCTTTT 59.046 37.500 0.00 0.00 0.00 2.27
1942 2372 8.349983 GCTTGTGTCTTTAACTCTTTTTATGGA 58.650 33.333 0.00 0.00 0.00 3.41
1982 2413 7.394872 GTGTTCTTTGTTCTATTGCGAGATAG 58.605 38.462 0.00 0.00 0.00 2.08
1983 2414 6.036083 TGTTCTTTGTTCTATTGCGAGATAGC 59.964 38.462 0.00 0.00 37.71 2.97
2049 2480 4.744137 TGCAAGTTGTGTTATGCAATTCAC 59.256 37.500 4.48 0.61 45.04 3.18
2052 2483 6.808212 GCAAGTTGTGTTATGCAATTCACTAT 59.192 34.615 15.64 3.84 38.63 2.12
2053 2484 7.967854 GCAAGTTGTGTTATGCAATTCACTATA 59.032 33.333 15.64 3.73 38.63 1.31
2054 2485 9.494479 CAAGTTGTGTTATGCAATTCACTATAG 57.506 33.333 15.64 0.00 33.38 1.31
2078 2509 7.721402 AGTAATAATTCTGACTAGCAGGTGAG 58.279 38.462 12.35 0.00 44.98 3.51
2085 2516 5.240891 TCTGACTAGCAGGTGAGATTTTTG 58.759 41.667 12.35 0.00 44.98 2.44
2149 2662 5.528043 ACTACTACAGAGGCATGAATCAG 57.472 43.478 0.00 0.00 0.00 2.90
2170 2683 1.266989 GCCTTTGTTCCTTCGGTTCAG 59.733 52.381 0.00 0.00 0.00 3.02
2179 2692 0.875059 CTTCGGTTCAGGGAGCAAAC 59.125 55.000 0.00 0.00 0.00 2.93
2243 2756 5.811190 TGACATTTTGCCTAAGCTTACCTA 58.189 37.500 0.86 0.00 40.80 3.08
2287 2802 7.348815 TCATGATACCTCAATTCAACTGGATT 58.651 34.615 0.00 0.00 34.37 3.01
2398 2913 6.644248 ACTTTGTTAACCAGTTTGGATACC 57.356 37.500 2.48 0.00 40.96 2.73
2419 2934 2.237392 CTGGGGAAGTCCAAGACCTAAG 59.763 54.545 0.00 0.00 39.00 2.18
2436 2951 7.739825 AGACCTAAGAAATATAAGCATCAGCA 58.260 34.615 0.00 0.00 45.49 4.41
2520 3035 6.264744 TCAGAGTGTACTAGTATAACCATGCC 59.735 42.308 5.75 0.00 0.00 4.40
2542 3057 5.525378 GCCATCTACTTTGTAGTCTCCATTG 59.475 44.000 4.89 0.00 35.78 2.82
2544 3059 5.086104 TCTACTTTGTAGTCTCCATTGGC 57.914 43.478 0.00 0.00 35.78 4.52
2585 3100 2.323999 ATGCTCAACCATTTTCCCCA 57.676 45.000 0.00 0.00 0.00 4.96
2586 3101 1.337118 TGCTCAACCATTTTCCCCAC 58.663 50.000 0.00 0.00 0.00 4.61
2604 3119 3.002583 TCCATGGCAGCGGAGACA 61.003 61.111 6.96 0.00 0.00 3.41
2664 3179 3.576078 TTTCAGAGGAAGCTTGGTGAA 57.424 42.857 2.10 4.50 33.82 3.18
2757 3272 6.265422 AGCTTAAATCTGCCACTGTTAACTTT 59.735 34.615 7.22 0.00 0.00 2.66
2799 3314 4.200092 GAGAAGGTGGATTTGGGTATGTC 58.800 47.826 0.00 0.00 0.00 3.06
2841 3356 1.170919 ACAGCACAGCTCCTGCAAAG 61.171 55.000 14.05 6.96 42.74 2.77
2921 3436 6.462628 GGTCATAGAGAATGGGTGGTAAGTAC 60.463 46.154 0.00 0.00 36.15 2.73
2923 3438 6.323996 TCATAGAGAATGGGTGGTAAGTACTG 59.676 42.308 0.00 0.00 36.15 2.74
2929 3444 1.065418 GGGTGGTAAGTACTGCATGCT 60.065 52.381 20.33 1.26 0.00 3.79
2975 3490 7.848128 TCTTTAGGTGGAGTTATAACTTCCAG 58.152 38.462 24.94 17.52 39.88 3.86
2979 3494 6.206042 AGGTGGAGTTATAACTTCCAGAGAT 58.794 40.000 24.94 14.66 39.88 2.75
3072 3587 5.762179 ACTGTATTGAGGATGACCAAAGA 57.238 39.130 0.00 0.00 38.94 2.52
3211 3726 4.586001 ACATTGAGTGCTGAAACTTGGAAT 59.414 37.500 0.00 0.00 0.00 3.01
3229 3802 5.421277 TGGAATGCTTTATTTGAGCCAATG 58.579 37.500 0.00 0.00 39.38 2.82
3234 3807 5.953183 TGCTTTATTTGAGCCAATGTACTG 58.047 37.500 0.00 0.00 39.38 2.74
3236 3809 6.030228 GCTTTATTTGAGCCAATGTACTGAC 58.970 40.000 0.00 0.00 34.06 3.51
3237 3810 6.349280 GCTTTATTTGAGCCAATGTACTGACA 60.349 38.462 0.00 0.00 35.57 3.58
3278 3851 5.104527 TCTGGAGGAACTGTTTTCTGAAAGA 60.105 40.000 2.75 0.00 40.43 2.52
3321 3894 9.376075 CTGAACATTAGGATAATATCGCATCTT 57.624 33.333 0.00 0.00 0.00 2.40
3330 3903 6.312426 GGATAATATCGCATCTTGAGGAACTG 59.688 42.308 0.00 0.00 41.55 3.16
3331 3904 4.679373 ATATCGCATCTTGAGGAACTGT 57.321 40.909 0.00 0.00 41.55 3.55
3351 3924 7.497925 ACTGTTTTCTGAAGTTCAACCTATC 57.502 36.000 7.06 0.00 0.00 2.08
3352 3925 7.283329 ACTGTTTTCTGAAGTTCAACCTATCT 58.717 34.615 7.06 0.00 0.00 1.98
3353 3926 8.429641 ACTGTTTTCTGAAGTTCAACCTATCTA 58.570 33.333 7.06 0.00 0.00 1.98
3354 3927 9.273016 CTGTTTTCTGAAGTTCAACCTATCTAA 57.727 33.333 7.06 0.00 0.00 2.10
3355 3928 9.793259 TGTTTTCTGAAGTTCAACCTATCTAAT 57.207 29.630 7.06 0.00 0.00 1.73
3426 3999 8.814038 AAATAATCTAAAGGTGATCAGTTGCT 57.186 30.769 0.00 0.00 0.00 3.91
3436 4010 5.645497 AGGTGATCAGTTGCTTGTTATCTTC 59.355 40.000 0.00 0.00 0.00 2.87
3448 4022 7.175104 TGCTTGTTATCTTCTTATTCCAAGGT 58.825 34.615 0.00 0.00 31.17 3.50
3449 4023 7.121168 TGCTTGTTATCTTCTTATTCCAAGGTG 59.879 37.037 0.00 0.00 31.17 4.00
3450 4024 7.415653 GCTTGTTATCTTCTTATTCCAAGGTGG 60.416 40.741 0.00 0.00 39.43 4.61
3451 4025 7.027874 TGTTATCTTCTTATTCCAAGGTGGT 57.972 36.000 0.00 0.00 39.03 4.16
3452 4026 8.153221 TGTTATCTTCTTATTCCAAGGTGGTA 57.847 34.615 0.00 0.00 39.03 3.25
3453 4027 8.778059 TGTTATCTTCTTATTCCAAGGTGGTAT 58.222 33.333 0.00 0.00 39.03 2.73
3454 4028 9.274206 GTTATCTTCTTATTCCAAGGTGGTATC 57.726 37.037 0.00 0.00 39.03 2.24
3467 4041 2.154462 GTGGTATCTGGTATGCATGCC 58.846 52.381 25.45 25.45 0.00 4.40
3515 4089 4.672413 GCAGTTCAAACTTCAGAACAATCG 59.328 41.667 7.88 0.00 44.94 3.34
3526 4100 8.560576 ACTTCAGAACAATCGTAACATTTTTG 57.439 30.769 0.00 0.00 0.00 2.44
3558 4223 8.135529 ACTGTTATTTAAAACTCCAACTTCTGC 58.864 33.333 0.00 0.00 0.00 4.26
3594 4259 0.555769 AACAATGGTCCTGTGTGGGT 59.444 50.000 0.00 0.00 36.20 4.51
3604 4269 4.065789 GTCCTGTGTGGGTTTTCTTCTAG 58.934 47.826 0.00 0.00 36.20 2.43
3638 4303 0.323999 TTCGTCCCTGCCTAGCTACA 60.324 55.000 0.00 0.00 0.00 2.74
3826 4493 2.012051 GCCTTCCTACATGTTGGTCCG 61.012 57.143 23.09 13.39 0.00 4.79
3882 4549 8.014322 TCAAATATTCTTATCGATGCGGTAAC 57.986 34.615 8.54 0.00 29.19 2.50
3888 4555 2.783828 ATCGATGCGGTAACTCTCTG 57.216 50.000 0.00 0.00 0.00 3.35
3897 4564 3.751698 GCGGTAACTCTCTGGTCAATTTT 59.248 43.478 0.00 0.00 0.00 1.82
3916 4583 7.718753 TCAATTTTGTTTGTTCCCATGCTTAAT 59.281 29.630 0.00 0.00 0.00 1.40
3921 4588 7.238486 TGTTTGTTCCCATGCTTAATTGTAT 57.762 32.000 0.00 0.00 0.00 2.29
3929 4596 7.950512 TCCCATGCTTAATTGTATTATGTTGG 58.049 34.615 0.00 0.00 0.00 3.77
3951 4618 5.163663 TGGTTTAACTGTGAAAGTTCTGCTG 60.164 40.000 0.00 0.00 46.60 4.41
3952 4619 4.552166 TTAACTGTGAAAGTTCTGCTGC 57.448 40.909 0.00 0.00 46.60 5.25
3953 4620 2.042686 ACTGTGAAAGTTCTGCTGCA 57.957 45.000 0.88 0.88 34.57 4.41
3960 4627 2.283145 AAGTTCTGCTGCAACAGGAT 57.717 45.000 16.77 0.99 38.26 3.24
3975 4642 7.946207 TGCAACAGGATTACAATTCAAAACTA 58.054 30.769 0.00 0.00 0.00 2.24
4089 4756 8.204160 CCTGAGTATGTAATGACAGGTATTCAA 58.796 37.037 0.00 0.00 39.50 2.69
4095 4762 5.640357 TGTAATGACAGGTATTCAACGGAAC 59.360 40.000 0.00 0.00 35.46 3.62
4096 4763 4.553330 ATGACAGGTATTCAACGGAACT 57.447 40.909 0.00 0.00 35.46 3.01
4098 4765 5.471556 TGACAGGTATTCAACGGAACTTA 57.528 39.130 0.00 0.00 35.46 2.24
4102 4769 8.095792 TGACAGGTATTCAACGGAACTTATTTA 58.904 33.333 0.00 0.00 35.46 1.40
4152 4977 7.202016 TCAGGAATTTTTAGTGTGCAGTTAG 57.798 36.000 0.00 0.00 0.00 2.34
4161 4986 4.417426 AGTGTGCAGTTAGTAGTTGGTT 57.583 40.909 0.00 0.00 0.00 3.67
4202 5027 7.687941 TTTTCCTAGTTTCCTGAATGTGATC 57.312 36.000 0.00 0.00 0.00 2.92
4204 5029 5.982356 TCCTAGTTTCCTGAATGTGATCAG 58.018 41.667 0.00 0.00 45.19 2.90
4230 5056 7.316544 TCCAAGAGAACAAAAACTCAGTTAC 57.683 36.000 0.00 0.00 35.83 2.50
4300 5126 0.664761 CACACTGTTCAGGCCACTTG 59.335 55.000 5.01 0.00 0.00 3.16
4318 5144 0.874175 TGACAACCAAGAGCGACGTG 60.874 55.000 0.00 0.00 0.00 4.49
4339 5165 0.818296 ATAGCTTCGGAGTCGTGCTT 59.182 50.000 0.00 2.32 42.76 3.91
4342 5168 1.073768 GCTTCGGAGTCGTGCTTCTC 61.074 60.000 0.00 0.00 37.69 2.87
4507 5333 0.110486 GAGGGGTTCAGAAGGTTGCA 59.890 55.000 0.00 0.00 0.00 4.08
4564 5390 1.597854 GCGCCCGATGATGGATGAA 60.598 57.895 0.00 0.00 0.00 2.57
4582 5408 2.297315 TGAAGTCGTCAAGCATCTGACT 59.703 45.455 10.65 3.20 43.01 3.41
4597 5423 3.363844 GACTCCGCTGCAGGACCTC 62.364 68.421 17.12 0.00 36.14 3.85
4633 5459 1.975407 ATCGTATAGGCCCCGGTCG 60.975 63.158 0.00 0.00 0.00 4.79
4680 5542 7.611855 TCTCTGAATCCACCCTAATTTTTCTTC 59.388 37.037 0.00 0.00 0.00 2.87
4730 5592 3.626670 GGAATGTGCTCTCTTCTTCATGG 59.373 47.826 0.00 0.00 0.00 3.66
4763 5625 1.364626 GCGGTGATTGCCAGTCTGAG 61.365 60.000 0.00 0.00 0.00 3.35
4764 5626 0.742281 CGGTGATTGCCAGTCTGAGG 60.742 60.000 0.00 0.00 0.00 3.86
4770 5632 2.125753 GCCAGTCTGAGGCGACAG 60.126 66.667 0.00 8.09 43.15 3.51
4814 5676 0.174162 GCATTGTTGGATGCTGGTCC 59.826 55.000 2.79 0.00 46.85 4.46
4932 5795 1.523154 TTTGCCTGTTGCCTAAGCGG 61.523 55.000 0.00 0.00 44.31 5.52
4934 5797 2.399356 GCCTGTTGCCTAAGCGGAC 61.399 63.158 0.00 0.00 44.31 4.79
4938 5801 2.098831 GTTGCCTAAGCGGACCGAC 61.099 63.158 20.50 9.27 44.31 4.79
4942 5805 2.277120 CTAAGCGGACCGACGACG 60.277 66.667 20.50 0.00 39.43 5.12
5070 5933 2.103941 GCTGGAGTTCATAGGGGAAGAG 59.896 54.545 0.00 0.00 0.00 2.85
5075 5938 3.970640 GAGTTCATAGGGGAAGAGATGGT 59.029 47.826 0.00 0.00 0.00 3.55
5076 5939 4.375313 AGTTCATAGGGGAAGAGATGGTT 58.625 43.478 0.00 0.00 0.00 3.67
5077 5940 4.164988 AGTTCATAGGGGAAGAGATGGTTG 59.835 45.833 0.00 0.00 0.00 3.77
5078 5941 2.439507 TCATAGGGGAAGAGATGGTTGC 59.560 50.000 0.00 0.00 0.00 4.17
5079 5942 2.270434 TAGGGGAAGAGATGGTTGCT 57.730 50.000 0.00 0.00 0.00 3.91
5080 5943 0.622665 AGGGGAAGAGATGGTTGCTG 59.377 55.000 0.00 0.00 0.00 4.41
5081 5944 0.394899 GGGGAAGAGATGGTTGCTGG 60.395 60.000 0.00 0.00 0.00 4.85
5082 5945 1.034292 GGGAAGAGATGGTTGCTGGC 61.034 60.000 0.00 0.00 0.00 4.85
5115 5983 2.057137 TTCTGAACCTGCTGCTTTGT 57.943 45.000 0.00 0.00 0.00 2.83
5118 5986 1.406539 CTGAACCTGCTGCTTTGTGTT 59.593 47.619 0.00 0.00 0.00 3.32
5119 5987 1.824230 TGAACCTGCTGCTTTGTGTTT 59.176 42.857 0.00 0.00 0.00 2.83
5120 5988 2.195922 GAACCTGCTGCTTTGTGTTTG 58.804 47.619 0.00 0.00 0.00 2.93
5121 5989 0.461135 ACCTGCTGCTTTGTGTTTGG 59.539 50.000 0.00 0.00 0.00 3.28
5122 5990 0.461135 CCTGCTGCTTTGTGTTTGGT 59.539 50.000 0.00 0.00 0.00 3.67
5151 6019 1.067916 GTGTTTGGTTGCAGGGCTG 59.932 57.895 0.00 0.00 0.00 4.85
5171 6039 2.176247 TCCTCCCAGGACAAGGATAC 57.824 55.000 1.94 0.00 40.06 2.24
5182 6050 2.496070 GACAAGGATACCCCCTTTTTGC 59.504 50.000 0.00 0.00 43.68 3.68
5184 6052 3.335484 ACAAGGATACCCCCTTTTTGCTA 59.665 43.478 0.00 0.00 43.68 3.49
5196 6064 2.008242 TTTTGCTATGGTTGCCACCT 57.992 45.000 8.65 0.00 44.61 4.00
5209 6077 1.271543 TGCCACCTGTTTGGATCTGAG 60.272 52.381 0.00 0.00 39.24 3.35
5221 6089 0.182299 GATCTGAGGGCAAGGAAGGG 59.818 60.000 0.00 0.00 0.00 3.95
5232 6100 2.692741 GGAAGGGTAGGGGCAGCT 60.693 66.667 0.00 0.00 0.00 4.24
5238 6106 1.373059 GGTAGGGGCAGCTAGATGC 59.627 63.158 24.60 24.60 45.74 3.91
5270 6138 1.890489 GTCAAAAACGGGGCTATGGTT 59.110 47.619 0.00 0.00 0.00 3.67
5293 6161 0.394488 TGTGAAAAAGTGGCGGGTGA 60.394 50.000 0.00 0.00 0.00 4.02
5335 6203 2.158475 AGCATGAAACCCTCACTTTCCA 60.158 45.455 0.00 0.00 36.69 3.53
5344 6212 2.040278 CCCTCACTTTCCACCATTCTCA 59.960 50.000 0.00 0.00 0.00 3.27
5346 6214 4.338879 CCTCACTTTCCACCATTCTCATT 58.661 43.478 0.00 0.00 0.00 2.57
5352 6220 6.881065 CACTTTCCACCATTCTCATTTCTCTA 59.119 38.462 0.00 0.00 0.00 2.43
5355 6223 6.179906 TCCACCATTCTCATTTCTCTATCC 57.820 41.667 0.00 0.00 0.00 2.59
5356 6224 5.907662 TCCACCATTCTCATTTCTCTATCCT 59.092 40.000 0.00 0.00 0.00 3.24
5357 6225 5.996513 CCACCATTCTCATTTCTCTATCCTG 59.003 44.000 0.00 0.00 0.00 3.86
5358 6226 6.409005 CCACCATTCTCATTTCTCTATCCTGT 60.409 42.308 0.00 0.00 0.00 4.00
5359 6227 6.482641 CACCATTCTCATTTCTCTATCCTGTG 59.517 42.308 0.00 0.00 0.00 3.66
5382 6608 4.976925 CGGCGGCCCATCTAGCAG 62.977 72.222 14.55 0.00 0.00 4.24
5425 6651 3.894427 TCATTCTCTACTCATGCCCTCTC 59.106 47.826 0.00 0.00 0.00 3.20
5426 6652 3.678965 TTCTCTACTCATGCCCTCTCT 57.321 47.619 0.00 0.00 0.00 3.10
5430 6656 4.413851 TCTCTACTCATGCCCTCTCTTCTA 59.586 45.833 0.00 0.00 0.00 2.10
5440 6666 3.006967 GCCCTCTCTTCTACTTTGTGTCA 59.993 47.826 0.00 0.00 0.00 3.58
5453 6679 4.039366 ACTTTGTGTCAGTTCTCTACCTCC 59.961 45.833 0.00 0.00 0.00 4.30
5454 6680 3.238788 TGTGTCAGTTCTCTACCTCCA 57.761 47.619 0.00 0.00 0.00 3.86
5455 6681 3.779444 TGTGTCAGTTCTCTACCTCCAT 58.221 45.455 0.00 0.00 0.00 3.41
5456 6682 3.764434 TGTGTCAGTTCTCTACCTCCATC 59.236 47.826 0.00 0.00 0.00 3.51
5457 6683 3.764434 GTGTCAGTTCTCTACCTCCATCA 59.236 47.826 0.00 0.00 0.00 3.07
5458 6684 4.220821 GTGTCAGTTCTCTACCTCCATCAA 59.779 45.833 0.00 0.00 0.00 2.57
5459 6685 5.026121 TGTCAGTTCTCTACCTCCATCAAT 58.974 41.667 0.00 0.00 0.00 2.57
5460 6686 5.127845 TGTCAGTTCTCTACCTCCATCAATC 59.872 44.000 0.00 0.00 0.00 2.67
5461 6687 4.339530 TCAGTTCTCTACCTCCATCAATCG 59.660 45.833 0.00 0.00 0.00 3.34
5468 6696 1.431488 CCTCCATCAATCGCGTGTGG 61.431 60.000 5.77 8.75 0.00 4.17
5502 6730 3.011517 AGGGTGCGGCTGGATCTT 61.012 61.111 0.00 0.00 0.00 2.40
5503 6731 2.825836 GGGTGCGGCTGGATCTTG 60.826 66.667 0.00 0.00 0.00 3.02
5506 6734 1.078848 GTGCGGCTGGATCTTGAGT 60.079 57.895 0.00 0.00 0.00 3.41
5510 6738 0.249657 CGGCTGGATCTTGAGTAGGC 60.250 60.000 0.00 0.00 0.00 3.93
5513 6741 0.249657 CTGGATCTTGAGTAGGCCGC 60.250 60.000 0.00 0.00 0.00 6.53
5514 6742 1.300233 GGATCTTGAGTAGGCCGCG 60.300 63.158 0.00 0.00 0.00 6.46
5515 6743 1.951631 GATCTTGAGTAGGCCGCGC 60.952 63.158 0.00 0.00 0.00 6.86
5516 6744 3.774959 ATCTTGAGTAGGCCGCGCG 62.775 63.158 25.67 25.67 0.00 6.86
5590 7633 5.462068 GCTCTTTTGATTACCACCAAAACAC 59.538 40.000 0.00 0.00 37.35 3.32
5592 7635 7.469456 GCTCTTTTGATTACCACCAAAACACTA 60.469 37.037 0.00 0.00 37.35 2.74
5604 7663 6.212955 CACCAAAACACTAAACTATGGGTTG 58.787 40.000 0.00 0.00 38.29 3.77
5607 7666 7.726738 ACCAAAACACTAAACTATGGGTTGTAT 59.273 33.333 0.00 0.00 38.29 2.29
5608 7667 9.233649 CCAAAACACTAAACTATGGGTTGTATA 57.766 33.333 0.00 0.00 38.29 1.47
5620 7679 9.893975 ACTATGGGTTGTATAACTATAGGTTCT 57.106 33.333 20.13 0.00 37.74 3.01
5623 7682 9.893975 ATGGGTTGTATAACTATAGGTTCTAGT 57.106 33.333 4.43 0.00 39.17 2.57
5634 7693 9.709495 AACTATAGGTTCTAGTACTATGAGTCG 57.291 37.037 2.33 0.00 31.69 4.18
5635 7694 8.869109 ACTATAGGTTCTAGTACTATGAGTCGT 58.131 37.037 2.33 0.00 0.00 4.34
5638 7697 7.966246 AGGTTCTAGTACTATGAGTCGTATG 57.034 40.000 2.33 0.00 0.00 2.39
5639 7698 7.507829 AGGTTCTAGTACTATGAGTCGTATGT 58.492 38.462 2.33 0.00 0.00 2.29
5640 7699 7.992033 AGGTTCTAGTACTATGAGTCGTATGTT 59.008 37.037 2.33 0.00 0.00 2.71
5641 7700 8.281893 GGTTCTAGTACTATGAGTCGTATGTTC 58.718 40.741 2.33 0.00 0.00 3.18
5642 7701 8.824781 GTTCTAGTACTATGAGTCGTATGTTCA 58.175 37.037 2.33 0.00 0.00 3.18
5643 7702 8.953368 TCTAGTACTATGAGTCGTATGTTCAA 57.047 34.615 2.33 0.00 0.00 2.69
5644 7703 9.387257 TCTAGTACTATGAGTCGTATGTTCAAA 57.613 33.333 2.33 0.00 0.00 2.69
5645 7704 9.999009 CTAGTACTATGAGTCGTATGTTCAAAA 57.001 33.333 2.33 0.00 0.00 2.44
5646 7705 8.684973 AGTACTATGAGTCGTATGTTCAAAAC 57.315 34.615 0.00 0.00 0.00 2.43
5647 7706 8.301720 AGTACTATGAGTCGTATGTTCAAAACA 58.698 33.333 0.00 0.00 46.94 2.83
5667 7726 9.239002 CAAAACATTAAACTATGGAACGTTGAA 57.761 29.630 5.00 0.00 0.00 2.69
5676 7735 6.331061 ACTATGGAACGTTGAACTATGAGTC 58.669 40.000 5.00 0.00 0.00 3.36
5683 7742 5.706916 ACGTTGAACTATGAGTCGTATGTT 58.293 37.500 0.00 6.82 0.00 2.71
5718 7777 8.204836 ACCTATGGAGTGTTGAACTGTTATATC 58.795 37.037 0.00 0.00 40.07 1.63
5815 7878 9.503427 GTTGCACTTATCATATTACCTTTGTTC 57.497 33.333 0.00 0.00 0.00 3.18
5825 7888 9.451002 TCATATTACCTTTGTTCGGAAATAACA 57.549 29.630 0.00 0.00 35.12 2.41
5838 7902 4.687483 CGGAAATAACAGACGTGGTTTAGT 59.313 41.667 7.42 0.00 0.00 2.24
5870 7934 9.959749 TTTTGAACTAAAACCACATCAGTTATC 57.040 29.630 0.00 0.00 33.48 1.75
5874 7938 6.106673 ACTAAAACCACATCAGTTATCTCCG 58.893 40.000 0.00 0.00 0.00 4.63
5881 7945 3.446161 ACATCAGTTATCTCCGAACGGAA 59.554 43.478 16.56 8.58 44.66 4.30
5891 7955 5.902613 TCTCCGAACGGAAGAAGTATTTA 57.097 39.130 16.56 0.00 44.66 1.40
5900 7964 8.570068 AACGGAAGAAGTATTTAATTGCCTTA 57.430 30.769 0.00 0.00 0.00 2.69
5972 8038 5.520748 AAAGGTCACCACAATCCTTATCT 57.479 39.130 0.00 0.00 39.05 1.98
5984 8050 7.102346 CACAATCCTTATCTATCACTCATCCC 58.898 42.308 0.00 0.00 0.00 3.85
5999 8065 1.475682 CATCCCTCAAAGGCTCAAAGC 59.524 52.381 0.00 0.00 41.46 3.51
6002 8068 1.897802 CCCTCAAAGGCTCAAAGCAAT 59.102 47.619 0.86 0.00 44.75 3.56
6004 8070 2.415090 CCTCAAAGGCTCAAAGCAATCG 60.415 50.000 0.86 0.00 44.75 3.34
6005 8071 2.227388 CTCAAAGGCTCAAAGCAATCGT 59.773 45.455 0.86 0.00 44.75 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.404923 TCGTTATTGAATTGGGGCGA 57.595 45.000 0.00 0.00 0.00 5.54
49 84 3.508744 AAGCCAACTTGACAACTTGTG 57.491 42.857 0.00 0.00 33.84 3.33
101 136 7.344134 AGGTAGGTGAGTTTAAGTTTCAAGTT 58.656 34.615 0.00 0.00 0.00 2.66
102 137 6.896883 AGGTAGGTGAGTTTAAGTTTCAAGT 58.103 36.000 0.00 0.00 0.00 3.16
103 138 8.148999 AGTAGGTAGGTGAGTTTAAGTTTCAAG 58.851 37.037 0.00 0.00 0.00 3.02
125 161 2.885894 GAGGGAACGGATGGAGTAGTAG 59.114 54.545 0.00 0.00 0.00 2.57
126 162 2.423947 GGAGGGAACGGATGGAGTAGTA 60.424 54.545 0.00 0.00 0.00 1.82
127 163 1.688627 GGAGGGAACGGATGGAGTAGT 60.689 57.143 0.00 0.00 0.00 2.73
128 164 1.041437 GGAGGGAACGGATGGAGTAG 58.959 60.000 0.00 0.00 0.00 2.57
129 165 0.754217 CGGAGGGAACGGATGGAGTA 60.754 60.000 0.00 0.00 0.00 2.59
130 166 2.058595 CGGAGGGAACGGATGGAGT 61.059 63.158 0.00 0.00 0.00 3.85
131 167 2.815308 CGGAGGGAACGGATGGAG 59.185 66.667 0.00 0.00 0.00 3.86
132 168 3.467226 GCGGAGGGAACGGATGGA 61.467 66.667 0.00 0.00 0.00 3.41
133 169 4.547367 GGCGGAGGGAACGGATGG 62.547 72.222 0.00 0.00 0.00 3.51
134 170 4.547367 GGGCGGAGGGAACGGATG 62.547 72.222 0.00 0.00 0.00 3.51
150 186 5.589050 CGGATTAGTCTTTCTTTTTAGGGGG 59.411 44.000 0.00 0.00 0.00 5.40
154 190 6.986904 AGCCGGATTAGTCTTTCTTTTTAG 57.013 37.500 5.05 0.00 0.00 1.85
155 191 7.763071 GTCTAGCCGGATTAGTCTTTCTTTTTA 59.237 37.037 5.05 0.00 0.00 1.52
158 194 5.422650 AGTCTAGCCGGATTAGTCTTTCTTT 59.577 40.000 5.05 0.00 0.00 2.52
159 195 4.957327 AGTCTAGCCGGATTAGTCTTTCTT 59.043 41.667 5.05 0.00 0.00 2.52
160 196 4.538738 AGTCTAGCCGGATTAGTCTTTCT 58.461 43.478 5.05 0.00 0.00 2.52
161 197 4.922471 AGTCTAGCCGGATTAGTCTTTC 57.078 45.455 5.05 0.00 0.00 2.62
162 198 5.447757 ACTAGTCTAGCCGGATTAGTCTTT 58.552 41.667 5.05 0.00 34.99 2.52
165 201 5.303971 TGTACTAGTCTAGCCGGATTAGTC 58.696 45.833 5.05 4.05 38.83 2.59
166 202 5.163216 ACTGTACTAGTCTAGCCGGATTAGT 60.163 44.000 5.05 6.30 40.29 2.24
167 203 5.307204 ACTGTACTAGTCTAGCCGGATTAG 58.693 45.833 5.05 6.34 33.17 1.73
169 205 4.167652 ACTGTACTAGTCTAGCCGGATT 57.832 45.455 5.05 0.00 33.17 3.01
170 206 3.860968 ACTGTACTAGTCTAGCCGGAT 57.139 47.619 5.05 0.00 33.17 4.18
171 207 4.102210 ACATACTGTACTAGTCTAGCCGGA 59.898 45.833 5.05 0.00 40.89 5.14
172 208 4.387598 ACATACTGTACTAGTCTAGCCGG 58.612 47.826 6.81 0.00 40.89 6.13
174 210 5.507650 GCCAACATACTGTACTAGTCTAGCC 60.508 48.000 6.81 0.00 40.89 3.93
175 211 5.067413 TGCCAACATACTGTACTAGTCTAGC 59.933 44.000 6.81 0.00 40.89 3.42
176 212 6.694877 TGCCAACATACTGTACTAGTCTAG 57.305 41.667 0.00 5.27 40.89 2.43
177 213 7.655521 AATGCCAACATACTGTACTAGTCTA 57.344 36.000 0.00 0.00 40.89 2.59
179 215 7.611213 AAAATGCCAACATACTGTACTAGTC 57.389 36.000 0.00 0.00 40.89 2.59
180 216 7.996098 AAAAATGCCAACATACTGTACTAGT 57.004 32.000 0.00 0.00 43.56 2.57
211 247 5.499139 TTTGATGCTCACGAAGTTTTCTT 57.501 34.783 0.00 0.00 41.61 2.52
212 248 4.023707 CCTTTGATGCTCACGAAGTTTTCT 60.024 41.667 0.00 0.00 41.61 2.52
213 249 4.222114 CCTTTGATGCTCACGAAGTTTTC 58.778 43.478 0.00 0.00 41.61 2.29
215 251 2.030805 GCCTTTGATGCTCACGAAGTTT 60.031 45.455 0.00 0.00 41.61 2.66
216 252 1.537202 GCCTTTGATGCTCACGAAGTT 59.463 47.619 0.00 0.00 41.61 2.66
218 254 1.446907 AGCCTTTGATGCTCACGAAG 58.553 50.000 0.00 0.00 32.41 3.79
219 255 3.631453 AGCCTTTGATGCTCACGAA 57.369 47.368 0.00 0.00 32.41 3.85
235 271 4.996976 TCAAGTCTCGGCTTGAGC 57.003 55.556 9.70 0.00 46.74 4.26
238 274 2.483876 TCAAGTTCAAGTCTCGGCTTG 58.516 47.619 4.94 4.94 45.18 4.01
239 275 2.910688 TCAAGTTCAAGTCTCGGCTT 57.089 45.000 0.00 0.00 0.00 4.35
240 276 2.613977 CCATCAAGTTCAAGTCTCGGCT 60.614 50.000 0.00 0.00 0.00 5.52
241 277 1.734465 CCATCAAGTTCAAGTCTCGGC 59.266 52.381 0.00 0.00 0.00 5.54
242 278 2.350522 CCCATCAAGTTCAAGTCTCGG 58.649 52.381 0.00 0.00 0.00 4.63
243 279 1.734465 GCCCATCAAGTTCAAGTCTCG 59.266 52.381 0.00 0.00 0.00 4.04
244 280 2.746362 CAGCCCATCAAGTTCAAGTCTC 59.254 50.000 0.00 0.00 0.00 3.36
245 281 2.553904 CCAGCCCATCAAGTTCAAGTCT 60.554 50.000 0.00 0.00 0.00 3.24
246 282 1.815003 CCAGCCCATCAAGTTCAAGTC 59.185 52.381 0.00 0.00 0.00 3.01
247 283 1.915141 CCAGCCCATCAAGTTCAAGT 58.085 50.000 0.00 0.00 0.00 3.16
248 284 0.529378 GCCAGCCCATCAAGTTCAAG 59.471 55.000 0.00 0.00 0.00 3.02
249 285 0.112995 AGCCAGCCCATCAAGTTCAA 59.887 50.000 0.00 0.00 0.00 2.69
250 286 0.609957 CAGCCAGCCCATCAAGTTCA 60.610 55.000 0.00 0.00 0.00 3.18
251 287 1.941999 GCAGCCAGCCCATCAAGTTC 61.942 60.000 0.00 0.00 37.23 3.01
252 288 1.980772 GCAGCCAGCCCATCAAGTT 60.981 57.895 0.00 0.00 37.23 2.66
253 289 2.362120 GCAGCCAGCCCATCAAGT 60.362 61.111 0.00 0.00 37.23 3.16
254 290 3.515286 CGCAGCCAGCCCATCAAG 61.515 66.667 0.00 0.00 41.38 3.02
255 291 3.565961 TTCGCAGCCAGCCCATCAA 62.566 57.895 0.00 0.00 41.38 2.57
256 292 4.032452 TTCGCAGCCAGCCCATCA 62.032 61.111 0.00 0.00 41.38 3.07
257 293 3.512516 GTTCGCAGCCAGCCCATC 61.513 66.667 0.00 0.00 41.38 3.51
258 294 3.984193 GAGTTCGCAGCCAGCCCAT 62.984 63.158 0.00 0.00 41.38 4.00
259 295 4.704833 GAGTTCGCAGCCAGCCCA 62.705 66.667 0.00 0.00 41.38 5.36
271 307 3.119096 GACAAGCCGCGGGAGTTC 61.119 66.667 29.38 9.78 0.00 3.01
272 308 3.469863 TTGACAAGCCGCGGGAGTT 62.470 57.895 29.38 0.00 0.00 3.01
273 309 3.936203 TTGACAAGCCGCGGGAGT 61.936 61.111 29.38 7.32 0.00 3.85
274 310 3.423154 GTTGACAAGCCGCGGGAG 61.423 66.667 29.38 0.83 0.00 4.30
275 311 3.936203 AGTTGACAAGCCGCGGGA 61.936 61.111 29.38 0.00 0.00 5.14
276 312 3.726517 CAGTTGACAAGCCGCGGG 61.727 66.667 29.38 13.36 0.00 6.13
277 313 2.664851 TCAGTTGACAAGCCGCGG 60.665 61.111 24.05 24.05 0.00 6.46
278 314 1.016130 ATCTCAGTTGACAAGCCGCG 61.016 55.000 0.00 0.00 0.00 6.46
279 315 1.661112 GTATCTCAGTTGACAAGCCGC 59.339 52.381 0.00 0.00 0.00 6.53
280 316 1.920574 CGTATCTCAGTTGACAAGCCG 59.079 52.381 0.00 0.00 0.00 5.52
281 317 1.661112 GCGTATCTCAGTTGACAAGCC 59.339 52.381 0.00 0.00 0.00 4.35
282 318 2.600867 GAGCGTATCTCAGTTGACAAGC 59.399 50.000 0.00 0.00 41.51 4.01
283 319 3.838120 TGAGCGTATCTCAGTTGACAAG 58.162 45.455 0.00 0.00 46.34 3.16
284 320 3.934457 TGAGCGTATCTCAGTTGACAA 57.066 42.857 0.00 0.00 46.34 3.18
293 329 3.449632 GGAGGAAAACTGAGCGTATCTC 58.550 50.000 0.00 0.00 42.23 2.75
294 330 2.168728 GGGAGGAAAACTGAGCGTATCT 59.831 50.000 0.00 0.00 0.00 1.98
295 331 2.168728 AGGGAGGAAAACTGAGCGTATC 59.831 50.000 0.00 0.00 0.00 2.24
296 332 2.188817 AGGGAGGAAAACTGAGCGTAT 58.811 47.619 0.00 0.00 0.00 3.06
297 333 1.640917 AGGGAGGAAAACTGAGCGTA 58.359 50.000 0.00 0.00 0.00 4.42
298 334 0.765510 AAGGGAGGAAAACTGAGCGT 59.234 50.000 0.00 0.00 0.00 5.07
299 335 1.537202 CAAAGGGAGGAAAACTGAGCG 59.463 52.381 0.00 0.00 0.00 5.03
300 336 2.587522 ACAAAGGGAGGAAAACTGAGC 58.412 47.619 0.00 0.00 0.00 4.26
301 337 4.207165 TGAACAAAGGGAGGAAAACTGAG 58.793 43.478 0.00 0.00 0.00 3.35
302 338 4.243793 TGAACAAAGGGAGGAAAACTGA 57.756 40.909 0.00 0.00 0.00 3.41
303 339 4.402474 ACTTGAACAAAGGGAGGAAAACTG 59.598 41.667 0.00 0.00 40.51 3.16
304 340 4.610333 ACTTGAACAAAGGGAGGAAAACT 58.390 39.130 0.00 0.00 40.51 2.66
305 341 5.339008 AACTTGAACAAAGGGAGGAAAAC 57.661 39.130 0.00 0.00 40.51 2.43
306 342 6.212589 AGAAAACTTGAACAAAGGGAGGAAAA 59.787 34.615 0.00 0.00 40.51 2.29
307 343 5.719563 AGAAAACTTGAACAAAGGGAGGAAA 59.280 36.000 0.00 0.00 40.51 3.13
308 344 5.269189 AGAAAACTTGAACAAAGGGAGGAA 58.731 37.500 0.00 0.00 40.51 3.36
309 345 4.867086 AGAAAACTTGAACAAAGGGAGGA 58.133 39.130 0.00 0.00 40.51 3.71
310 346 4.261197 CGAGAAAACTTGAACAAAGGGAGG 60.261 45.833 0.00 0.00 40.51 4.30
311 347 4.261197 CCGAGAAAACTTGAACAAAGGGAG 60.261 45.833 0.00 0.00 40.51 4.30
312 348 3.630312 CCGAGAAAACTTGAACAAAGGGA 59.370 43.478 0.00 0.00 40.51 4.20
313 349 3.630312 TCCGAGAAAACTTGAACAAAGGG 59.370 43.478 0.00 0.00 40.51 3.95
314 350 4.598062 GTCCGAGAAAACTTGAACAAAGG 58.402 43.478 0.00 0.00 40.51 3.11
315 351 4.271687 CGTCCGAGAAAACTTGAACAAAG 58.728 43.478 0.00 0.00 42.07 2.77
316 352 3.064271 CCGTCCGAGAAAACTTGAACAAA 59.936 43.478 0.00 0.00 0.00 2.83
317 353 2.610374 CCGTCCGAGAAAACTTGAACAA 59.390 45.455 0.00 0.00 0.00 2.83
318 354 2.159071 TCCGTCCGAGAAAACTTGAACA 60.159 45.455 0.00 0.00 0.00 3.18
319 355 2.475487 CTCCGTCCGAGAAAACTTGAAC 59.525 50.000 0.00 0.00 41.63 3.18
320 356 2.547218 CCTCCGTCCGAGAAAACTTGAA 60.547 50.000 0.00 0.00 41.63 2.69
321 357 1.000506 CCTCCGTCCGAGAAAACTTGA 59.999 52.381 0.00 0.00 41.63 3.02
322 358 1.429463 CCTCCGTCCGAGAAAACTTG 58.571 55.000 0.00 0.00 41.63 3.16
323 359 0.320697 CCCTCCGTCCGAGAAAACTT 59.679 55.000 0.00 0.00 41.63 2.66
324 360 1.542187 CCCCTCCGTCCGAGAAAACT 61.542 60.000 0.00 0.00 41.63 2.66
325 361 1.079336 CCCCTCCGTCCGAGAAAAC 60.079 63.158 0.00 0.00 41.63 2.43
326 362 0.251742 TACCCCTCCGTCCGAGAAAA 60.252 55.000 0.00 0.00 41.63 2.29
327 363 0.682209 CTACCCCTCCGTCCGAGAAA 60.682 60.000 0.00 0.00 41.63 2.52
328 364 1.077212 CTACCCCTCCGTCCGAGAA 60.077 63.158 0.00 0.00 41.63 2.87
329 365 0.982852 TACTACCCCTCCGTCCGAGA 60.983 60.000 0.00 0.00 41.63 4.04
330 366 0.107017 TTACTACCCCTCCGTCCGAG 60.107 60.000 0.00 0.00 38.46 4.63
331 367 0.552848 ATTACTACCCCTCCGTCCGA 59.447 55.000 0.00 0.00 0.00 4.55
332 368 0.957362 GATTACTACCCCTCCGTCCG 59.043 60.000 0.00 0.00 0.00 4.79
333 369 2.378378 AGATTACTACCCCTCCGTCC 57.622 55.000 0.00 0.00 0.00 4.79
334 370 4.646492 TGTTTAGATTACTACCCCTCCGTC 59.354 45.833 0.00 0.00 0.00 4.79
335 371 4.403752 GTGTTTAGATTACTACCCCTCCGT 59.596 45.833 0.00 0.00 0.00 4.69
336 372 4.648307 AGTGTTTAGATTACTACCCCTCCG 59.352 45.833 0.00 0.00 0.00 4.63
337 373 5.898397 AGAGTGTTTAGATTACTACCCCTCC 59.102 44.000 0.00 0.00 0.00 4.30
338 374 7.421087 AAGAGTGTTTAGATTACTACCCCTC 57.579 40.000 0.00 0.00 0.00 4.30
367 403 9.643693 CGGAGGAAGTACTTTTTATGTAAAGTA 57.356 33.333 10.02 9.08 44.32 2.24
368 404 8.152898 ACGGAGGAAGTACTTTTTATGTAAAGT 58.847 33.333 10.02 10.61 46.85 2.66
369 405 8.543862 ACGGAGGAAGTACTTTTTATGTAAAG 57.456 34.615 10.02 0.00 40.23 1.85
370 406 8.907222 AACGGAGGAAGTACTTTTTATGTAAA 57.093 30.769 10.02 0.00 0.00 2.01
371 407 8.907222 AAACGGAGGAAGTACTTTTTATGTAA 57.093 30.769 10.02 0.00 0.00 2.41
372 408 8.907222 AAAACGGAGGAAGTACTTTTTATGTA 57.093 30.769 10.02 0.00 0.00 2.29
373 409 7.812690 AAAACGGAGGAAGTACTTTTTATGT 57.187 32.000 10.02 3.94 0.00 2.29
387 423 9.902196 GAAAGACAAATATTTAAAAACGGAGGA 57.098 29.630 0.00 0.00 0.00 3.71
405 441 8.712363 CATTTGTCGAAATCTCTAGAAAGACAA 58.288 33.333 14.61 14.61 42.99 3.18
408 444 8.307483 AGTCATTTGTCGAAATCTCTAGAAAGA 58.693 33.333 0.00 0.00 28.65 2.52
409 445 8.472683 AGTCATTTGTCGAAATCTCTAGAAAG 57.527 34.615 0.00 0.00 28.65 2.62
411 447 8.520351 TGTAGTCATTTGTCGAAATCTCTAGAA 58.480 33.333 0.00 0.00 28.65 2.10
412 448 8.051901 TGTAGTCATTTGTCGAAATCTCTAGA 57.948 34.615 0.00 0.00 28.65 2.43
413 449 8.864069 ATGTAGTCATTTGTCGAAATCTCTAG 57.136 34.615 0.00 0.00 28.65 2.43
414 450 9.731819 GTATGTAGTCATTTGTCGAAATCTCTA 57.268 33.333 0.00 0.00 35.70 2.43
415 451 7.432545 CGTATGTAGTCATTTGTCGAAATCTCT 59.567 37.037 0.00 0.00 35.70 3.10
416 452 7.431376 TCGTATGTAGTCATTTGTCGAAATCTC 59.569 37.037 0.00 0.00 35.70 2.75
417 453 7.255569 TCGTATGTAGTCATTTGTCGAAATCT 58.744 34.615 0.00 0.00 35.70 2.40
419 455 7.464178 GCTTCGTATGTAGTCATTTGTCGAAAT 60.464 37.037 0.00 0.00 34.83 2.17
420 456 6.183360 GCTTCGTATGTAGTCATTTGTCGAAA 60.183 38.462 0.00 0.00 34.83 3.46
423 459 4.561213 TGCTTCGTATGTAGTCATTTGTCG 59.439 41.667 0.00 0.00 35.70 4.35
424 460 6.589830 ATGCTTCGTATGTAGTCATTTGTC 57.410 37.500 0.00 0.00 35.70 3.18
425 461 8.662781 ATTATGCTTCGTATGTAGTCATTTGT 57.337 30.769 4.66 0.00 35.70 2.83
430 466 9.974980 TCATTTATTATGCTTCGTATGTAGTCA 57.025 29.630 0.00 0.00 0.00 3.41
474 510 9.682465 GGACTACCATACAGATGTATATAGACA 57.318 37.037 20.09 2.07 39.06 3.41
475 511 9.682465 TGGACTACCATACAGATGTATATAGAC 57.318 37.037 20.09 16.16 41.77 2.59
514 550 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
515 551 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
516 552 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
517 553 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
518 554 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
519 555 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
522 558 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
523 559 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
524 560 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
530 627 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36
541 638 4.525024 TCTCCTAGCCTTGTGTACTACTC 58.475 47.826 0.00 0.00 0.00 2.59
546 643 5.593679 TTACATCTCCTAGCCTTGTGTAC 57.406 43.478 0.00 0.00 0.00 2.90
547 644 6.808321 AATTACATCTCCTAGCCTTGTGTA 57.192 37.500 0.00 0.00 0.00 2.90
548 645 5.700402 AATTACATCTCCTAGCCTTGTGT 57.300 39.130 0.00 0.00 0.00 3.72
550 647 8.548877 TCTAAAAATTACATCTCCTAGCCTTGT 58.451 33.333 0.00 0.00 0.00 3.16
551 648 8.964476 TCTAAAAATTACATCTCCTAGCCTTG 57.036 34.615 0.00 0.00 0.00 3.61
552 649 9.785982 GATCTAAAAATTACATCTCCTAGCCTT 57.214 33.333 0.00 0.00 0.00 4.35
553 650 8.379331 GGATCTAAAAATTACATCTCCTAGCCT 58.621 37.037 0.00 0.00 0.00 4.58
554 651 8.157476 TGGATCTAAAAATTACATCTCCTAGCC 58.843 37.037 0.00 0.00 0.00 3.93
555 652 9.561069 TTGGATCTAAAAATTACATCTCCTAGC 57.439 33.333 0.00 0.00 0.00 3.42
602 699 2.001269 AGTGGCCAGTGGGTATCCC 61.001 63.158 13.75 3.34 45.71 3.85
603 700 1.224592 CAGTGGCCAGTGGGTATCC 59.775 63.158 29.98 4.29 36.17 2.59
604 701 1.452108 GCAGTGGCCAGTGGGTATC 60.452 63.158 35.86 18.89 36.17 2.24
625 722 3.946126 GAAGGGGAGGGCAAGTGGC 62.946 68.421 0.00 0.00 43.74 5.01
631 964 3.023116 CCATGGAAGGGGAGGGCA 61.023 66.667 5.56 0.00 31.11 5.36
633 966 1.214305 TTCACCATGGAAGGGGAGGG 61.214 60.000 21.47 0.00 46.47 4.30
634 967 0.929244 ATTCACCATGGAAGGGGAGG 59.071 55.000 21.47 0.00 46.47 4.30
644 977 1.714899 GGCGGGTTCGATTCACCATG 61.715 60.000 7.07 0.35 39.00 3.66
645 978 1.451387 GGCGGGTTCGATTCACCAT 60.451 57.895 7.07 0.00 39.00 3.55
646 979 2.046700 GGCGGGTTCGATTCACCA 60.047 61.111 7.07 0.00 39.00 4.17
801 1166 0.104855 CGGCGAGGAATGAGGAATCA 59.895 55.000 0.00 0.00 0.00 2.57
1017 1398 0.951558 GGAGGATCGAGTCAGAGAGC 59.048 60.000 0.00 0.00 34.37 4.09
1019 1400 1.142060 GGAGGAGGATCGAGTCAGAGA 59.858 57.143 0.00 0.00 34.37 3.10
1031 1412 0.350904 TAGAGGAGGAGGGAGGAGGA 59.649 60.000 0.00 0.00 0.00 3.71
1032 1413 1.357761 GATAGAGGAGGAGGGAGGAGG 59.642 61.905 0.00 0.00 0.00 4.30
1033 1414 1.357761 GGATAGAGGAGGAGGGAGGAG 59.642 61.905 0.00 0.00 0.00 3.69
1034 1415 1.462426 GGATAGAGGAGGAGGGAGGA 58.538 60.000 0.00 0.00 0.00 3.71
1035 1416 0.411848 GGGATAGAGGAGGAGGGAGG 59.588 65.000 0.00 0.00 0.00 4.30
1036 1417 1.357761 GAGGGATAGAGGAGGAGGGAG 59.642 61.905 0.00 0.00 0.00 4.30
1037 1418 1.462426 GAGGGATAGAGGAGGAGGGA 58.538 60.000 0.00 0.00 0.00 4.20
1038 1419 0.411848 GGAGGGATAGAGGAGGAGGG 59.588 65.000 0.00 0.00 0.00 4.30
1039 1420 0.411848 GGGAGGGATAGAGGAGGAGG 59.588 65.000 0.00 0.00 0.00 4.30
1040 1421 1.357761 GAGGGAGGGATAGAGGAGGAG 59.642 61.905 0.00 0.00 0.00 3.69
1041 1422 1.059364 AGAGGGAGGGATAGAGGAGGA 60.059 57.143 0.00 0.00 0.00 3.71
1042 1423 1.357761 GAGAGGGAGGGATAGAGGAGG 59.642 61.905 0.00 0.00 0.00 4.30
1043 1424 1.357761 GGAGAGGGAGGGATAGAGGAG 59.642 61.905 0.00 0.00 0.00 3.69
1162 1547 2.747686 GACCGGTTCCTGCTTGGA 59.252 61.111 9.42 0.00 44.51 3.53
1165 1550 2.030562 CACGACCGGTTCCTGCTT 59.969 61.111 9.42 0.00 0.00 3.91
1188 1573 2.762459 CACCTACCCCCGCTAGCA 60.762 66.667 16.45 0.00 0.00 3.49
1275 1664 1.288752 CCACCACCAAATTCCGTGC 59.711 57.895 0.38 0.00 0.00 5.34
1466 1855 5.588958 AAAGAGCAGGAATTTAATCAGCC 57.411 39.130 0.00 0.00 0.00 4.85
1602 1996 5.220154 CGAACACAACATCGTATCAAGTACC 60.220 44.000 0.00 0.00 34.48 3.34
1620 2015 1.454653 GTACCTTTGCTCGACGAACAC 59.545 52.381 0.00 0.00 0.00 3.32
1637 2035 4.806330 TCTGATCCTCGTGTTTCTTGTAC 58.194 43.478 0.00 0.00 0.00 2.90
1640 2038 4.498241 TCATCTGATCCTCGTGTTTCTTG 58.502 43.478 0.00 0.00 0.00 3.02
1647 2054 4.334759 AGCAAAATTCATCTGATCCTCGTG 59.665 41.667 0.00 0.00 0.00 4.35
1716 2140 4.226427 TCTTGTGAGAGCTGGCAATTAT 57.774 40.909 0.00 0.00 0.00 1.28
1718 2142 2.574006 TCTTGTGAGAGCTGGCAATT 57.426 45.000 0.00 0.00 0.00 2.32
1756 2180 9.495572 AAAGCCCAATTCGATGTAAAATAAAAA 57.504 25.926 0.00 0.00 0.00 1.94
1759 2183 8.062065 AGAAAGCCCAATTCGATGTAAAATAA 57.938 30.769 0.00 0.00 32.04 1.40
1761 2185 6.530019 AGAAAGCCCAATTCGATGTAAAAT 57.470 33.333 0.00 0.00 32.04 1.82
1762 2186 5.975693 AGAAAGCCCAATTCGATGTAAAA 57.024 34.783 0.00 0.00 32.04 1.52
1763 2187 5.975693 AAGAAAGCCCAATTCGATGTAAA 57.024 34.783 0.00 0.00 32.04 2.01
1764 2188 5.710099 AGAAAGAAAGCCCAATTCGATGTAA 59.290 36.000 0.00 0.00 32.04 2.41
1765 2189 5.253330 AGAAAGAAAGCCCAATTCGATGTA 58.747 37.500 0.00 0.00 32.04 2.29
1810 2234 7.408756 TTCAATAGGTTTCCTCAATTGATGG 57.591 36.000 8.96 12.36 37.98 3.51
1819 2243 7.759886 GCAAGGTTAAATTCAATAGGTTTCCTC 59.240 37.037 0.00 0.00 34.61 3.71
1853 2277 2.881539 TAGGACATCGACGCCTCGGT 62.882 60.000 5.27 0.00 40.58 4.69
1859 2283 4.802039 TGTTTAAGATTAGGACATCGACGC 59.198 41.667 0.00 0.00 0.00 5.19
1860 2284 5.051641 GCTGTTTAAGATTAGGACATCGACG 60.052 44.000 0.00 0.00 0.00 5.12
1936 2366 7.034967 ACACCTTTTACTTACCCATCCATAA 57.965 36.000 0.00 0.00 0.00 1.90
1942 2372 6.837048 ACAAAGAACACCTTTTACTTACCCAT 59.163 34.615 0.00 0.00 42.13 4.00
1982 2413 2.355007 CCATTGGTTTGAAGGGGATTGC 60.355 50.000 0.00 0.00 0.00 3.56
1983 2414 2.905736 ACCATTGGTTTGAAGGGGATTG 59.094 45.455 1.37 0.00 30.73 2.67
2008 2439 3.684908 TGCACCTAAAGATAAGCAGCAA 58.315 40.909 0.00 0.00 0.00 3.91
2023 2454 2.305928 TGCATAACACAACTTGCACCT 58.694 42.857 0.00 0.00 39.98 4.00
2025 2456 4.744137 TGAATTGCATAACACAACTTGCAC 59.256 37.500 0.00 0.00 44.16 4.57
2052 2483 8.762481 TCACCTGCTAGTCAGAATTATTACTA 57.238 34.615 13.65 0.00 45.72 1.82
2053 2484 7.561722 TCTCACCTGCTAGTCAGAATTATTACT 59.438 37.037 13.65 0.00 45.72 2.24
2054 2485 7.717568 TCTCACCTGCTAGTCAGAATTATTAC 58.282 38.462 13.65 0.00 45.72 1.89
2057 2488 6.992664 ATCTCACCTGCTAGTCAGAATTAT 57.007 37.500 13.65 1.66 45.72 1.28
2078 2509 4.619973 TGTCACAATGGTCAGCAAAAATC 58.380 39.130 0.00 0.00 0.00 2.17
2085 2516 4.002982 TCAGTTATGTCACAATGGTCAGC 58.997 43.478 0.00 0.00 0.00 4.26
2170 2683 8.345565 CAACATAATTAGATGTAGTTTGCTCCC 58.654 37.037 0.00 0.00 39.16 4.30
2398 2913 1.952621 TAGGTCTTGGACTTCCCCAG 58.047 55.000 0.00 0.00 37.53 4.45
2456 2971 4.389992 ACTCAGATTACGCTCAAATGTGTG 59.610 41.667 0.00 0.00 31.46 3.82
2503 3018 8.951614 AAGTAGATGGCATGGTTATACTAGTA 57.048 34.615 3.81 4.77 0.00 1.82
2507 3022 6.900194 ACAAAGTAGATGGCATGGTTATACT 58.100 36.000 3.81 2.61 0.00 2.12
2508 3023 7.931948 ACTACAAAGTAGATGGCATGGTTATAC 59.068 37.037 3.81 0.21 32.84 1.47
2509 3024 8.029782 ACTACAAAGTAGATGGCATGGTTATA 57.970 34.615 3.81 0.00 32.84 0.98
2520 3035 5.525378 GCCAATGGAGACTACAAAGTAGATG 59.475 44.000 2.05 0.00 35.56 2.90
2542 3057 1.419762 ACCCCAAACTGGAAATTTGCC 59.580 47.619 7.27 3.75 40.96 4.52
2544 3059 4.414337 TTCACCCCAAACTGGAAATTTG 57.586 40.909 0.00 0.00 40.96 2.32
2604 3119 7.502895 TCTCGATTGCTAGAGTTTAGGTATCTT 59.497 37.037 0.00 0.00 36.03 2.40
2664 3179 2.884012 TGATGCGTCAACACCATTTTCT 59.116 40.909 6.04 0.00 0.00 2.52
2757 3272 4.163649 TCTCCGAGAATACTGTCTGGTCTA 59.836 45.833 0.00 0.00 0.00 2.59
2799 3314 1.467920 GCTCAATCCACCCCTTGAAG 58.532 55.000 0.00 0.00 31.40 3.02
2921 3436 6.690194 ATTTAGGACTTAAGAAGCATGCAG 57.310 37.500 21.98 9.77 0.00 4.41
2923 3438 7.766283 AGAAATTTAGGACTTAAGAAGCATGC 58.234 34.615 10.51 10.51 0.00 4.06
2975 3490 3.141398 TCCGCCTGCAAATTGATATCTC 58.859 45.455 3.98 0.00 0.00 2.75
2979 3494 2.722094 ACTTCCGCCTGCAAATTGATA 58.278 42.857 0.00 0.00 0.00 2.15
3072 3587 5.829391 TGCCATGAATTCATATACAAGCAGT 59.171 36.000 20.32 0.00 34.26 4.40
3174 3689 7.549134 CAGCACTCAATGTAGGAATACTAAACA 59.451 37.037 0.00 0.00 32.37 2.83
3175 3690 7.764443 TCAGCACTCAATGTAGGAATACTAAAC 59.236 37.037 0.00 0.00 32.37 2.01
3211 3726 5.709631 TCAGTACATTGGCTCAAATAAAGCA 59.290 36.000 0.00 0.00 41.66 3.91
3321 3894 5.496556 TGAACTTCAGAAAACAGTTCCTCA 58.503 37.500 9.35 0.00 43.94 3.86
3418 3991 7.882791 TGGAATAAGAAGATAACAAGCAACTGA 59.117 33.333 0.00 0.00 0.00 3.41
3426 3999 7.466804 ACCACCTTGGAATAAGAAGATAACAA 58.533 34.615 0.00 0.00 40.96 2.83
3436 4010 5.373812 ACCAGATACCACCTTGGAATAAG 57.626 43.478 0.00 0.00 40.96 1.73
3448 4022 2.057140 AGGCATGCATACCAGATACCA 58.943 47.619 21.36 0.00 0.00 3.25
3449 4023 2.867109 AGGCATGCATACCAGATACC 57.133 50.000 21.36 0.00 0.00 2.73
3450 4024 4.899502 AGTAAGGCATGCATACCAGATAC 58.100 43.478 21.36 15.91 0.00 2.24
3451 4025 6.669591 AGATAGTAAGGCATGCATACCAGATA 59.330 38.462 21.36 10.23 0.00 1.98
3452 4026 5.486775 AGATAGTAAGGCATGCATACCAGAT 59.513 40.000 21.36 14.05 0.00 2.90
3453 4027 4.840680 AGATAGTAAGGCATGCATACCAGA 59.159 41.667 21.36 10.31 0.00 3.86
3454 4028 5.046735 AGAGATAGTAAGGCATGCATACCAG 60.047 44.000 21.36 0.00 0.00 4.00
3604 4269 4.395231 AGGGACGAAAAGCAATAAGTAAGC 59.605 41.667 0.00 0.00 0.00 3.09
3690 4355 9.374711 AGGAGAATAAAAAGGGACAAAACAATA 57.625 29.630 0.00 0.00 0.00 1.90
3691 4356 8.150296 CAGGAGAATAAAAAGGGACAAAACAAT 58.850 33.333 0.00 0.00 0.00 2.71
3882 4549 5.979517 GGAACAAACAAAATTGACCAGAGAG 59.020 40.000 0.00 0.00 34.38 3.20
3921 4588 8.962679 AGAACTTTCACAGTTAAACCAACATAA 58.037 29.630 0.00 0.00 46.53 1.90
3929 4596 4.735338 GCAGCAGAACTTTCACAGTTAAAC 59.265 41.667 0.00 0.00 46.53 2.01
3951 4618 8.986477 ATAGTTTTGAATTGTAATCCTGTTGC 57.014 30.769 0.00 0.00 0.00 4.17
4089 4756 8.456471 GGCTACTTTGAAATAAATAAGTTCCGT 58.544 33.333 0.00 0.00 33.28 4.69
4102 4769 8.995027 TGGATATAATGTGGCTACTTTGAAAT 57.005 30.769 11.01 2.84 0.00 2.17
4134 4802 7.501225 ACCAACTACTAACTGCACACTAAAAAT 59.499 33.333 0.00 0.00 0.00 1.82
4139 4807 5.303589 AGAACCAACTACTAACTGCACACTA 59.696 40.000 0.00 0.00 0.00 2.74
4178 5003 7.230747 TGATCACATTCAGGAAACTAGGAAAA 58.769 34.615 0.00 0.00 40.21 2.29
4179 5004 6.778821 TGATCACATTCAGGAAACTAGGAAA 58.221 36.000 0.00 0.00 40.21 3.13
4180 5005 6.213397 TCTGATCACATTCAGGAAACTAGGAA 59.787 38.462 0.00 0.00 42.78 3.36
4181 5006 5.721480 TCTGATCACATTCAGGAAACTAGGA 59.279 40.000 0.00 0.00 42.78 2.94
4191 5016 5.915175 TCTCTTGGATCTGATCACATTCAG 58.085 41.667 18.64 9.08 43.70 3.02
4202 5027 6.261826 ACTGAGTTTTTGTTCTCTTGGATCTG 59.738 38.462 0.00 0.00 0.00 2.90
4204 5029 6.625873 ACTGAGTTTTTGTTCTCTTGGATC 57.374 37.500 0.00 0.00 0.00 3.36
4230 5056 8.533965 CATGTCTATTGCCAAAACAAATAATCG 58.466 33.333 0.00 0.00 32.27 3.34
4300 5126 0.874607 ACACGTCGCTCTTGGTTGTC 60.875 55.000 0.00 0.00 0.00 3.18
4318 5144 1.334243 AGCACGACTCCGAAGCTATAC 59.666 52.381 0.00 0.00 44.04 1.47
4339 5165 2.640302 GCCAGTCAGCACCTCGAGA 61.640 63.158 15.71 0.00 0.00 4.04
4342 5168 2.433838 CTGCCAGTCAGCACCTCG 60.434 66.667 0.00 0.00 38.00 4.63
4507 5333 1.002868 GCAGTGGTGGCAGATCTGT 60.003 57.895 23.38 0.00 0.00 3.41
4582 5408 2.922503 TTGAGGTCCTGCAGCGGA 60.923 61.111 8.66 0.00 0.00 5.54
4615 5441 1.975407 CGACCGGGGCCTATACGAT 60.975 63.158 6.32 0.00 0.00 3.73
4680 5542 2.805099 GCTTCACTTCCACTCTTGTCAG 59.195 50.000 0.00 0.00 0.00 3.51
4763 5625 0.454452 GAAATGCCGTTTCTGTCGCC 60.454 55.000 2.09 0.00 42.37 5.54
4764 5626 3.001576 GAAATGCCGTTTCTGTCGC 57.998 52.632 2.09 0.00 42.37 5.19
4770 5632 6.473455 CCAAGAAATCATAGAAATGCCGTTTC 59.527 38.462 0.98 0.98 45.31 2.78
4860 5723 3.067106 TGTCAGAGCTCCAATTTTCGTC 58.933 45.455 10.93 0.00 0.00 4.20
4932 5795 0.109873 ATCAGACAACGTCGTCGGTC 60.110 55.000 17.64 17.64 40.98 4.79
4934 5797 0.708370 CAATCAGACAACGTCGTCGG 59.292 55.000 7.05 0.00 40.98 4.79
4938 5801 4.562789 ACATATCACAATCAGACAACGTCG 59.437 41.667 0.00 0.00 37.67 5.12
5028 5891 1.377725 GACCACTGGGATGGCACTG 60.378 63.158 0.00 0.00 44.33 3.66
5070 5933 1.214589 CAGCAAGCCAGCAACCATC 59.785 57.895 0.55 0.00 36.85 3.51
5081 5944 0.318445 CAGAAACCACAGCAGCAAGC 60.318 55.000 0.00 0.00 46.19 4.01
5082 5945 1.311859 TCAGAAACCACAGCAGCAAG 58.688 50.000 0.00 0.00 0.00 4.01
5115 5983 2.158534 ACACATCCCTAAGCACCAAACA 60.159 45.455 0.00 0.00 0.00 2.83
5118 5986 2.890311 CAAACACATCCCTAAGCACCAA 59.110 45.455 0.00 0.00 0.00 3.67
5119 5987 2.513753 CAAACACATCCCTAAGCACCA 58.486 47.619 0.00 0.00 0.00 4.17
5120 5988 1.818674 CCAAACACATCCCTAAGCACC 59.181 52.381 0.00 0.00 0.00 5.01
5121 5989 2.514803 ACCAAACACATCCCTAAGCAC 58.485 47.619 0.00 0.00 0.00 4.40
5122 5990 2.890311 CAACCAAACACATCCCTAAGCA 59.110 45.455 0.00 0.00 0.00 3.91
5165 6033 3.117131 CCATAGCAAAAAGGGGGTATCCT 60.117 47.826 0.00 0.00 39.17 3.24
5171 6039 1.066215 GCAACCATAGCAAAAAGGGGG 60.066 52.381 0.00 0.00 0.00 5.40
5196 6064 1.272092 CCTTGCCCTCAGATCCAAACA 60.272 52.381 0.00 0.00 0.00 2.83
5209 6077 2.690734 CCCCTACCCTTCCTTGCCC 61.691 68.421 0.00 0.00 0.00 5.36
5232 6100 5.447624 TTGACGAATATTCCGAGCATCTA 57.552 39.130 9.87 0.00 0.00 1.98
5270 6138 1.234821 CCGCCACTTTTTCACAGCTA 58.765 50.000 0.00 0.00 0.00 3.32
5274 6142 0.394488 TCACCCGCCACTTTTTCACA 60.394 50.000 0.00 0.00 0.00 3.58
5311 6179 2.191128 AGTGAGGGTTTCATGCTCAC 57.809 50.000 17.70 17.70 43.15 3.51
5312 6180 2.957402 AAGTGAGGGTTTCATGCTCA 57.043 45.000 0.00 0.00 38.29 4.26
5335 6203 6.590068 CACAGGATAGAGAAATGAGAATGGT 58.410 40.000 0.00 0.00 0.00 3.55
5344 6212 1.539065 CCGCGCACAGGATAGAGAAAT 60.539 52.381 8.75 0.00 0.00 2.17
5346 6214 1.437573 CCGCGCACAGGATAGAGAA 59.562 57.895 8.75 0.00 0.00 2.87
5381 6607 2.051518 CACCTCTCGCAGCCTCTCT 61.052 63.158 0.00 0.00 0.00 3.10
5382 6608 2.003658 CTCACCTCTCGCAGCCTCTC 62.004 65.000 0.00 0.00 0.00 3.20
5425 6651 6.864165 GGTAGAGAACTGACACAAAGTAGAAG 59.136 42.308 0.00 0.00 0.00 2.85
5426 6652 6.550108 AGGTAGAGAACTGACACAAAGTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
5430 6656 4.039366 GGAGGTAGAGAACTGACACAAAGT 59.961 45.833 0.00 0.00 0.00 2.66
5440 6666 3.068873 GCGATTGATGGAGGTAGAGAACT 59.931 47.826 0.00 0.00 0.00 3.01
5483 6711 3.474570 GATCCAGCCGCACCCTCT 61.475 66.667 0.00 0.00 0.00 3.69
5488 6716 0.175760 TACTCAAGATCCAGCCGCAC 59.824 55.000 0.00 0.00 0.00 5.34
5492 6720 0.107643 GGCCTACTCAAGATCCAGCC 59.892 60.000 0.00 0.00 0.00 4.85
5518 6746 1.463674 GGTTATCCACCAGGCAACAG 58.536 55.000 0.00 0.00 46.42 3.16
5519 6747 3.662290 GGTTATCCACCAGGCAACA 57.338 52.632 0.00 0.00 46.42 3.33
5538 6766 6.186957 TCCAACAACCTATAGTTACCGTCTA 58.813 40.000 0.00 0.00 36.18 2.59
5543 6771 7.506971 AGCTTATCCAACAACCTATAGTTACC 58.493 38.462 0.00 0.00 36.18 2.85
5552 6780 5.385198 TCAAAAGAGCTTATCCAACAACCT 58.615 37.500 0.00 0.00 0.00 3.50
5608 7667 9.709495 CGACTCATAGTACTAGAACCTATAGTT 57.291 37.037 8.85 0.00 43.07 2.24
5609 7668 8.869109 ACGACTCATAGTACTAGAACCTATAGT 58.131 37.037 8.85 3.08 37.29 2.12
5612 7671 9.656040 CATACGACTCATAGTACTAGAACCTAT 57.344 37.037 8.85 0.00 0.00 2.57
5613 7672 8.646004 ACATACGACTCATAGTACTAGAACCTA 58.354 37.037 8.85 0.00 0.00 3.08
5614 7673 7.507829 ACATACGACTCATAGTACTAGAACCT 58.492 38.462 8.85 0.00 0.00 3.50
5615 7674 7.727331 ACATACGACTCATAGTACTAGAACC 57.273 40.000 8.85 0.00 0.00 3.62
5616 7675 8.824781 TGAACATACGACTCATAGTACTAGAAC 58.175 37.037 8.85 3.52 0.00 3.01
5617 7676 8.953368 TGAACATACGACTCATAGTACTAGAA 57.047 34.615 8.85 0.00 0.00 2.10
5618 7677 8.953368 TTGAACATACGACTCATAGTACTAGA 57.047 34.615 8.85 5.49 0.00 2.43
5619 7678 9.999009 TTTTGAACATACGACTCATAGTACTAG 57.001 33.333 8.85 0.00 0.00 2.57
5620 7679 9.778993 GTTTTGAACATACGACTCATAGTACTA 57.221 33.333 4.77 4.77 0.00 1.82
5621 7680 8.301720 TGTTTTGAACATACGACTCATAGTACT 58.698 33.333 0.00 0.00 36.25 2.73
5622 7681 8.456904 TGTTTTGAACATACGACTCATAGTAC 57.543 34.615 0.00 0.00 36.25 2.73
5637 7696 8.407064 ACGTTCCATAGTTTAATGTTTTGAACA 58.593 29.630 0.00 0.00 46.94 3.18
5638 7697 8.791355 ACGTTCCATAGTTTAATGTTTTGAAC 57.209 30.769 0.00 0.00 32.90 3.18
5639 7698 9.239002 CAACGTTCCATAGTTTAATGTTTTGAA 57.761 29.630 0.00 0.00 31.66 2.69
5640 7699 8.622157 TCAACGTTCCATAGTTTAATGTTTTGA 58.378 29.630 0.00 0.00 31.66 2.69
5641 7700 8.789881 TCAACGTTCCATAGTTTAATGTTTTG 57.210 30.769 0.00 0.00 31.66 2.44
5642 7701 9.240159 GTTCAACGTTCCATAGTTTAATGTTTT 57.760 29.630 0.00 0.00 31.66 2.43
5643 7702 8.626526 AGTTCAACGTTCCATAGTTTAATGTTT 58.373 29.630 0.00 0.00 31.66 2.83
5644 7703 8.161699 AGTTCAACGTTCCATAGTTTAATGTT 57.838 30.769 0.00 0.00 33.70 2.71
5645 7704 7.739498 AGTTCAACGTTCCATAGTTTAATGT 57.261 32.000 0.00 0.00 0.00 2.71
5646 7705 9.702726 CATAGTTCAACGTTCCATAGTTTAATG 57.297 33.333 0.00 0.00 0.00 1.90
5647 7706 9.661563 TCATAGTTCAACGTTCCATAGTTTAAT 57.338 29.630 0.00 0.00 0.00 1.40
5648 7707 9.146984 CTCATAGTTCAACGTTCCATAGTTTAA 57.853 33.333 0.00 0.00 0.00 1.52
5649 7708 8.308931 ACTCATAGTTCAACGTTCCATAGTTTA 58.691 33.333 0.00 0.00 0.00 2.01
5650 7709 7.159372 ACTCATAGTTCAACGTTCCATAGTTT 58.841 34.615 0.00 0.00 0.00 2.66
5651 7710 6.698380 ACTCATAGTTCAACGTTCCATAGTT 58.302 36.000 0.00 0.00 0.00 2.24
5652 7711 6.282199 ACTCATAGTTCAACGTTCCATAGT 57.718 37.500 0.00 0.00 0.00 2.12
5661 7720 6.028368 AGAACATACGACTCATAGTTCAACG 58.972 40.000 0.00 0.00 38.18 4.10
5667 7726 4.710375 ACCCAAGAACATACGACTCATAGT 59.290 41.667 0.00 0.00 0.00 2.12
5676 7735 5.054477 CCATAGGTAACCCAAGAACATACG 58.946 45.833 0.00 0.00 37.17 3.06
5683 7742 3.798515 ACACTCCATAGGTAACCCAAGA 58.201 45.455 0.00 0.00 37.17 3.02
5787 7850 9.019656 ACAAAGGTAATATGATAAGTGCAACAA 57.980 29.630 0.00 0.00 41.43 2.83
5789 7852 9.503427 GAACAAAGGTAATATGATAAGTGCAAC 57.497 33.333 0.00 0.00 0.00 4.17
5790 7853 8.394877 CGAACAAAGGTAATATGATAAGTGCAA 58.605 33.333 0.00 0.00 0.00 4.08
5792 7855 7.225931 TCCGAACAAAGGTAATATGATAAGTGC 59.774 37.037 0.00 0.00 0.00 4.40
5794 7857 9.675464 TTTCCGAACAAAGGTAATATGATAAGT 57.325 29.630 0.00 0.00 0.00 2.24
5806 7869 4.212636 CGTCTGTTATTTCCGAACAAAGGT 59.787 41.667 0.00 0.00 36.41 3.50
5810 7873 3.495377 CCACGTCTGTTATTTCCGAACAA 59.505 43.478 0.00 0.00 36.41 2.83
5811 7874 3.061322 CCACGTCTGTTATTTCCGAACA 58.939 45.455 0.00 0.00 35.55 3.18
5815 7878 4.687483 ACTAAACCACGTCTGTTATTTCCG 59.313 41.667 0.74 0.00 0.00 4.30
5825 7888 7.090953 TCAAAATTTGAACTAAACCACGTCT 57.909 32.000 5.87 0.00 36.59 4.18
5838 7902 9.658799 TGATGTGGTTTTAGTTCAAAATTTGAA 57.341 25.926 16.28 16.28 46.68 2.69
5861 7925 3.952323 TCTTCCGTTCGGAGATAACTGAT 59.048 43.478 13.56 0.00 35.04 2.90
5870 7934 7.399523 CAATTAAATACTTCTTCCGTTCGGAG 58.600 38.462 13.56 8.71 35.51 4.63
5874 7938 7.085052 AGGCAATTAAATACTTCTTCCGTTC 57.915 36.000 0.00 0.00 0.00 3.95
5911 7976 9.490379 GTGAGATTACCTCCATAATTCGTTATT 57.510 33.333 0.00 0.00 41.25 1.40
5915 7981 5.365605 TGGTGAGATTACCTCCATAATTCGT 59.634 40.000 0.00 0.00 41.25 3.85
5917 7983 6.831976 AGTGGTGAGATTACCTCCATAATTC 58.168 40.000 0.00 0.00 41.25 2.17
5972 8038 3.387962 AGCCTTTGAGGGATGAGTGATA 58.612 45.455 0.00 0.00 35.37 2.15
5984 8050 2.227388 ACGATTGCTTTGAGCCTTTGAG 59.773 45.455 0.00 0.00 41.51 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.