Multiple sequence alignment - TraesCS7B01G031000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G031000 chr7B 100.000 2574 0 0 1 2574 29598217 29595644 0.000000e+00 4754.0
1 TraesCS7B01G031000 chr7B 100.000 1810 0 0 2812 4621 29595406 29593597 0.000000e+00 3343.0
2 TraesCS7B01G031000 chr7B 79.747 395 48 22 164 546 29597864 29597490 1.650000e-64 257.0
3 TraesCS7B01G031000 chr7B 79.747 395 48 22 354 728 29598054 29597672 1.650000e-64 257.0
4 TraesCS7B01G031000 chr7B 82.213 253 38 6 1104 1353 619592506 619592258 1.300000e-50 211.0
5 TraesCS7B01G031000 chr7A 93.012 2490 100 33 1 2430 83943204 83940729 0.000000e+00 3567.0
6 TraesCS7B01G031000 chr7A 92.633 1018 56 12 2817 3822 83940615 83939605 0.000000e+00 1447.0
7 TraesCS7B01G031000 chr7A 91.346 416 32 3 4208 4621 83939023 83938610 2.410000e-157 566.0
8 TraesCS7B01G031000 chr7A 89.698 398 34 6 3823 4216 83939553 83939159 6.900000e-138 501.0
9 TraesCS7B01G031000 chr7A 83.030 495 52 17 260 728 83943022 83942534 1.990000e-113 420.0
10 TraesCS7B01G031000 chr7A 81.818 374 48 14 162 530 83942820 83942462 3.500000e-76 296.0
11 TraesCS7B01G031000 chr7A 80.451 399 47 21 354 728 83943019 83942628 4.550000e-70 276.0
12 TraesCS7B01G031000 chr7A 81.818 286 38 8 170 454 83942717 83942445 1.290000e-55 228.0
13 TraesCS7B01G031000 chr7A 87.129 202 18 7 710 906 83943631 83943433 6.020000e-54 222.0
14 TraesCS7B01G031000 chr7A 97.143 105 3 0 2470 2574 83940728 83940624 1.320000e-40 178.0
15 TraesCS7B01G031000 chr7A 82.584 178 21 3 179 356 83942613 83942446 1.040000e-31 148.0
16 TraesCS7B01G031000 chr7A 79.255 188 25 7 554 727 83943011 83942824 8.120000e-23 119.0
17 TraesCS7B01G031000 chr7A 95.745 47 2 0 1467 1513 12454969 12454923 4.960000e-10 76.8
18 TraesCS7B01G031000 chr7A 95.745 47 2 0 1467 1513 12652364 12652318 4.960000e-10 76.8
19 TraesCS7B01G031000 chr7D 92.618 2452 120 34 162 2574 82304520 82302091 0.000000e+00 3469.0
20 TraesCS7B01G031000 chr7D 94.158 1010 47 8 2817 3822 82302082 82301081 0.000000e+00 1528.0
21 TraesCS7B01G031000 chr7D 92.269 802 52 7 3823 4619 82301029 82300233 0.000000e+00 1129.0
22 TraesCS7B01G031000 chr7D 89.145 737 54 10 4 728 82304779 82304057 0.000000e+00 894.0
23 TraesCS7B01G031000 chr7D 81.081 481 59 14 260 723 82304622 82304157 5.690000e-94 355.0
24 TraesCS7B01G031000 chr7D 82.514 366 44 14 170 530 82304335 82303985 2.090000e-78 303.0
25 TraesCS7B01G031000 chr7D 82.292 288 35 9 171 454 82304239 82303964 7.730000e-58 235.0
26 TraesCS7B01G031000 chr7D 86.000 200 17 7 710 906 82305202 82305011 2.180000e-48 204.0
27 TraesCS7B01G031000 chr7D 83.246 191 18 4 170 356 82304145 82303965 3.700000e-36 163.0
28 TraesCS7B01G031000 chr7D 95.745 47 2 0 1467 1513 13029145 13029099 4.960000e-10 76.8
29 TraesCS7B01G031000 chr4D 95.745 47 2 0 1467 1513 506606741 506606695 4.960000e-10 76.8
30 TraesCS7B01G031000 chr4A 95.745 47 2 0 1467 1513 724782993 724783039 4.960000e-10 76.8
31 TraesCS7B01G031000 chr1D 95.745 47 2 0 1467 1513 364624897 364624851 4.960000e-10 76.8
32 TraesCS7B01G031000 chr1B 95.745 47 2 0 1467 1513 487951105 487951059 4.960000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G031000 chr7B 29593597 29598217 4620 True 2152.75 4754 89.873500 1 4621 4 chr7B.!!$R2 4620
1 TraesCS7B01G031000 chr7A 83938610 83943631 5021 True 664.00 3567 86.659750 1 4621 12 chr7A.!!$R3 4620
2 TraesCS7B01G031000 chr7D 82300233 82305202 4969 True 920.00 3469 87.035889 4 4619 9 chr7D.!!$R2 4615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 535 1.065701 CCGGAACTCATAGTCTCACCG 59.934 57.143 0.00 0.00 39.02 4.94 F
1470 2058 0.661552 TGCTCGTACGTCCATAGCTC 59.338 55.000 21.72 0.95 34.28 4.09 F
1943 2531 0.836400 AAGGTGGAGCTCCCTTCGAA 60.836 55.000 29.95 7.26 36.29 3.71 F
3230 3840 0.037326 TCAGCTTCCAACTAGCACGG 60.037 55.000 0.00 0.00 41.11 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2590 1.552799 TTCTGCTGATCCTCGCCCAA 61.553 55.0 0.00 0.0 0.00 4.12 R
2440 3037 0.991146 ACACATGGTGCATAGGGTGA 59.009 50.0 15.44 0.0 36.98 4.02 R
3547 4160 0.176449 CTGCTCCGATGACATGACCA 59.824 55.0 0.00 0.0 0.00 4.02 R
4480 5299 0.755079 GGGACGGGGGAGTACATAAC 59.245 60.0 0.00 0.0 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 479 2.097466 GCTTCCATGGTAAACGTGATGG 59.903 50.000 12.58 0.00 38.41 3.51
51 480 3.605634 CTTCCATGGTAAACGTGATGGA 58.394 45.455 12.58 0.00 42.12 3.41
52 481 3.704800 TCCATGGTAAACGTGATGGAA 57.295 42.857 12.58 0.00 41.13 3.53
53 482 4.022413 TCCATGGTAAACGTGATGGAAA 57.978 40.909 12.58 0.00 41.13 3.13
54 483 4.399219 TCCATGGTAAACGTGATGGAAAA 58.601 39.130 12.58 0.00 41.13 2.29
103 535 1.065701 CCGGAACTCATAGTCTCACCG 59.934 57.143 0.00 0.00 39.02 4.94
138 595 8.028354 CCGGTCCGGTTTTTAAAACTATTTTAT 58.972 33.333 23.02 0.00 42.73 1.40
139 596 9.409312 CGGTCCGGTTTTTAAAACTATTTTATT 57.591 29.630 18.31 0.00 35.26 1.40
149 606 4.729227 AACTATTTTATTGGGTTGCCGG 57.271 40.909 0.00 0.00 0.00 6.13
275 737 1.995376 AACTTAACAGGGTGGCTTGG 58.005 50.000 0.00 0.00 0.00 3.61
472 941 9.512435 CAAGATAACTATTTGGCTTGATTTCTG 57.488 33.333 0.00 0.00 35.89 3.02
500 1065 6.434181 TCTCGAATCTTAATCGTAAATGCG 57.566 37.500 0.00 0.00 40.99 4.73
573 1140 1.799181 GCTCGATCGCTTAAGTGCTCA 60.799 52.381 17.41 6.36 0.00 4.26
627 1195 6.758593 TTTGTTGTCAGATACGTAACAGAC 57.241 37.500 17.72 17.72 33.39 3.51
665 1233 9.362539 CTATGACTTTGCTTAAATGCTGAAATT 57.637 29.630 0.00 0.00 0.00 1.82
673 1241 9.539825 TTGCTTAAATGCTGAAATTTTAAGTCA 57.460 25.926 13.06 9.85 41.59 3.41
859 1433 1.261480 ACCACTTGCAAACCACACAA 58.739 45.000 0.00 0.00 0.00 3.33
860 1434 1.067213 ACCACTTGCAAACCACACAAC 60.067 47.619 0.00 0.00 0.00 3.32
1028 1612 2.686835 ACTGGAGGAGGAGCAGGC 60.687 66.667 0.00 0.00 0.00 4.85
1029 1613 2.365370 CTGGAGGAGGAGCAGGCT 60.365 66.667 0.00 0.00 0.00 4.58
1081 1668 1.599576 GAGGTGGAGCAGAGGGAAC 59.400 63.158 0.00 0.00 0.00 3.62
1086 1673 2.270527 GAGCAGAGGGAACAGGGC 59.729 66.667 0.00 0.00 0.00 5.19
1382 1969 4.337274 CCATGTAAGCATCAGCATTTCTCA 59.663 41.667 0.00 0.00 45.49 3.27
1387 1974 3.899726 AGCATCAGCATTTCTCAATCCT 58.100 40.909 0.00 0.00 45.49 3.24
1388 1975 5.045012 AGCATCAGCATTTCTCAATCCTA 57.955 39.130 0.00 0.00 45.49 2.94
1389 1976 4.820716 AGCATCAGCATTTCTCAATCCTAC 59.179 41.667 0.00 0.00 45.49 3.18
1390 1977 4.820716 GCATCAGCATTTCTCAATCCTACT 59.179 41.667 0.00 0.00 41.58 2.57
1392 1979 5.946942 TCAGCATTTCTCAATCCTACTCT 57.053 39.130 0.00 0.00 0.00 3.24
1393 1980 6.305272 TCAGCATTTCTCAATCCTACTCTT 57.695 37.500 0.00 0.00 0.00 2.85
1396 1983 7.335422 TCAGCATTTCTCAATCCTACTCTTTTC 59.665 37.037 0.00 0.00 0.00 2.29
1407 1995 5.148502 TCCTACTCTTTTCAGTCTCCAACT 58.851 41.667 0.00 0.00 39.44 3.16
1470 2058 0.661552 TGCTCGTACGTCCATAGCTC 59.338 55.000 21.72 0.95 34.28 4.09
1518 2106 1.153823 CTACTGGAACACGAGGGCG 60.154 63.158 0.00 0.00 44.79 6.13
1791 2379 4.117372 GTGAAGCCGTCGTTCGCG 62.117 66.667 0.00 0.00 42.98 5.87
1941 2529 1.078848 CAAGGTGGAGCTCCCTTCG 60.079 63.158 29.95 15.73 39.04 3.79
1942 2530 1.229209 AAGGTGGAGCTCCCTTCGA 60.229 57.895 29.95 8.09 36.29 3.71
1943 2531 0.836400 AAGGTGGAGCTCCCTTCGAA 60.836 55.000 29.95 7.26 36.29 3.71
1975 2563 4.063967 CGTCACCAGCCACCGCTA 62.064 66.667 0.00 0.00 46.25 4.26
2069 2663 2.016393 ATCAAGATCGAGCCGCCGAA 62.016 55.000 0.00 0.00 42.22 4.30
2283 2877 0.991920 TCCGGGCTTCCAAATTCTCT 59.008 50.000 0.00 0.00 0.00 3.10
2452 3053 6.715347 ATAAAGGATTTTCACCCTATGCAC 57.285 37.500 0.00 0.00 40.09 4.57
2463 3064 4.410555 TCACCCTATGCACCATGTGTATTA 59.589 41.667 3.21 0.00 39.40 0.98
2479 3080 8.647796 CATGTGTATTACTATTAGGAGTTGGGA 58.352 37.037 0.00 0.00 0.00 4.37
2857 3460 9.262358 AGACAGTGACTACTTTTAATCTTTGTC 57.738 33.333 0.00 0.00 34.07 3.18
2953 3556 7.038587 TCCTTCTCCAATTGTACTGCTTTACTA 60.039 37.037 4.43 0.00 0.00 1.82
2954 3557 7.064728 CCTTCTCCAATTGTACTGCTTTACTAC 59.935 40.741 4.43 0.00 0.00 2.73
3014 3617 6.128742 CCTGTTTTGCTGTTTTATCATTGCTC 60.129 38.462 0.00 0.00 0.00 4.26
3230 3840 0.037326 TCAGCTTCCAACTAGCACGG 60.037 55.000 0.00 0.00 41.11 4.94
3241 3854 8.997621 TTCCAACTAGCACGGAATATATAATC 57.002 34.615 4.43 0.00 33.53 1.75
3374 3987 2.885113 GGCAACAAATCGGAGGGC 59.115 61.111 0.00 0.00 0.00 5.19
3532 4145 1.217882 GACCACAACGTCAACCTCAG 58.782 55.000 0.00 0.00 32.74 3.35
3547 4160 2.292785 ACCTCAGTGTGGATCATCTCCT 60.293 50.000 17.99 0.00 45.21 3.69
3554 4167 2.436911 TGTGGATCATCTCCTGGTCATG 59.563 50.000 0.00 0.00 45.21 3.07
3651 4264 7.524717 TCGATCTACCTCACATCATAATCAA 57.475 36.000 0.00 0.00 0.00 2.57
3692 4306 4.305989 TGGTGATCTTGACAAGCAAAAC 57.694 40.909 10.50 6.06 35.74 2.43
3693 4307 3.953612 TGGTGATCTTGACAAGCAAAACT 59.046 39.130 10.50 0.00 35.74 2.66
3885 4551 3.813166 TGTCATTTGACTTCCTTTCGGTC 59.187 43.478 11.67 0.00 44.99 4.79
3909 4575 3.631686 TGATGACCCGAAATAAGCCATTG 59.368 43.478 0.00 0.00 0.00 2.82
3916 4582 4.539870 CCGAAATAAGCCATTGCATACAG 58.460 43.478 0.00 0.00 41.13 2.74
3927 4593 5.481105 CCATTGCATACAGTTCAACCAAAT 58.519 37.500 0.00 0.00 0.00 2.32
3969 4635 5.897377 ACTTATCGAATTTTTGTCCCTGG 57.103 39.130 0.00 0.00 0.00 4.45
4007 4674 9.199982 CTAAGACTTTTTATGTCTAAACCGACA 57.800 33.333 0.00 0.00 46.82 4.35
4080 4747 9.968870 AATAAAAATTAGAACAAACGCCTAACA 57.031 25.926 0.00 0.00 0.00 2.41
4138 4807 9.541724 TCTTCTTCGAAAAATGACGATTTTATG 57.458 29.630 0.00 0.00 40.27 1.90
4222 5040 1.891919 ACGCACACGAACCTGCAAT 60.892 52.632 0.00 0.00 43.93 3.56
4235 5053 4.052159 ACCTGCAATTCTCATAGTCTCG 57.948 45.455 0.00 0.00 0.00 4.04
4255 5073 4.297299 CGGCTACGAATTAAGACTGGTA 57.703 45.455 0.00 0.00 44.60 3.25
4310 5128 5.624900 CCATGAAAAGTTAACATCACACACG 59.375 40.000 8.61 0.00 0.00 4.49
4435 5254 2.168313 AGAAAACTTTTGGTGGCACAGG 59.832 45.455 20.82 1.72 41.80 4.00
4436 5255 0.829990 AAACTTTTGGTGGCACAGGG 59.170 50.000 20.82 6.85 41.80 4.45
4462 5281 3.691118 GCTGGAAACATGATAGTCAGCAA 59.309 43.478 19.37 0.00 43.66 3.91
4480 5299 5.008316 TCAGCAAGCACATAATTAGCATCAG 59.992 40.000 0.00 0.00 0.00 2.90
4492 5311 9.155975 CATAATTAGCATCAGTTATGTACTCCC 57.844 37.037 0.00 0.00 37.93 4.30
4505 5325 0.105862 TACTCCCCCGTCCCATAGTG 60.106 60.000 0.00 0.00 0.00 2.74
4511 5331 1.555992 CCCCGTCCCATAGTGTAACAA 59.444 52.381 0.00 0.00 41.43 2.83
4513 5333 2.027929 CCCGTCCCATAGTGTAACAACA 60.028 50.000 0.00 0.00 41.43 3.33
4570 5390 3.566742 GGAAGAAGAACGGGCAGTTTTTA 59.433 43.478 4.14 0.00 44.35 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.465886 GAGAGATGTCTAGTAGCCAAGGA 58.534 47.826 0.00 0.00 30.97 3.36
2 3 3.252215 CGAGAGATGTCTAGTAGCCAAGG 59.748 52.174 0.00 0.00 30.97 3.61
4 5 2.619177 GCGAGAGATGTCTAGTAGCCAA 59.381 50.000 2.03 0.00 30.97 4.52
5 6 2.222886 GCGAGAGATGTCTAGTAGCCA 58.777 52.381 2.03 0.00 30.97 4.75
6 7 1.195900 CGCGAGAGATGTCTAGTAGCC 59.804 57.143 0.00 0.00 30.97 3.93
7 8 1.868498 ACGCGAGAGATGTCTAGTAGC 59.132 52.381 15.93 1.39 30.97 3.58
12 441 0.748367 AGCCACGCGAGAGATGTCTA 60.748 55.000 15.93 0.00 30.97 2.59
53 482 4.041723 CGATTCAACCGTTGCTTCTTTTT 58.958 39.130 6.37 0.00 0.00 1.94
54 483 3.550030 CCGATTCAACCGTTGCTTCTTTT 60.550 43.478 6.37 0.00 0.00 2.27
58 487 0.872388 ACCGATTCAACCGTTGCTTC 59.128 50.000 6.37 5.06 0.00 3.86
91 523 0.381089 GGTCGACCGGTGAGACTATG 59.619 60.000 28.29 5.40 35.42 2.23
138 595 4.418328 CCCGATCCGGCAACCCAA 62.418 66.667 0.00 0.00 46.86 4.12
149 606 2.496470 CACCCTATTAGTAGCCCCGATC 59.504 54.545 0.00 0.00 0.00 3.69
160 617 3.817647 GAGCAATCAAGCCACCCTATTAG 59.182 47.826 0.00 0.00 34.23 1.73
243 703 7.770433 CACCCTGTTAAGTTATCTTGATCATCA 59.230 37.037 0.00 0.00 35.36 3.07
275 737 4.848299 CGAAGATTTGAGCACTTAAGCAAC 59.152 41.667 1.29 0.00 36.85 4.17
336 798 4.926238 CCGCTATCTTGATCATCTGTTACC 59.074 45.833 0.00 0.00 0.00 2.85
411 880 9.459640 GTTACGCATCCGACAACATATATATAT 57.540 33.333 0.00 0.00 38.29 0.86
412 881 8.460428 TGTTACGCATCCGACAACATATATATA 58.540 33.333 0.00 0.00 37.70 0.86
413 882 7.317390 TGTTACGCATCCGACAACATATATAT 58.683 34.615 0.00 0.00 37.70 0.86
472 941 9.836739 CATTTACGATTAAGATTCGAGAACTTC 57.163 33.333 4.07 0.00 39.81 3.01
627 1195 5.812642 AGCAAAGTCATAGTTACCTTCATCG 59.187 40.000 0.00 0.00 0.00 3.84
631 1199 9.774742 CATTTAAGCAAAGTCATAGTTACCTTC 57.225 33.333 0.00 0.00 0.00 3.46
635 1203 8.450964 TCAGCATTTAAGCAAAGTCATAGTTAC 58.549 33.333 0.00 0.00 36.85 2.50
859 1433 4.295199 GGGCAGGGGTTTTCGGGT 62.295 66.667 0.00 0.00 0.00 5.28
1382 1969 6.271159 AGTTGGAGACTGAAAAGAGTAGGATT 59.729 38.462 0.00 0.00 37.17 3.01
1387 1974 5.244178 GGAGAGTTGGAGACTGAAAAGAGTA 59.756 44.000 0.00 0.00 39.19 2.59
1388 1975 4.039852 GGAGAGTTGGAGACTGAAAAGAGT 59.960 45.833 0.00 0.00 39.19 3.24
1389 1976 4.039730 TGGAGAGTTGGAGACTGAAAAGAG 59.960 45.833 0.00 0.00 39.19 2.85
1390 1977 3.967326 TGGAGAGTTGGAGACTGAAAAGA 59.033 43.478 0.00 0.00 39.19 2.52
1392 1979 4.982241 ATGGAGAGTTGGAGACTGAAAA 57.018 40.909 0.00 0.00 39.19 2.29
1393 1980 4.982241 AATGGAGAGTTGGAGACTGAAA 57.018 40.909 0.00 0.00 39.19 2.69
1470 2058 3.315949 TTGTCCGTCCTTCCCGGG 61.316 66.667 16.85 16.85 45.51 5.73
1634 2222 2.040544 GTGGCGTCCAGGACATTGG 61.041 63.158 20.13 4.14 39.70 3.16
1721 2309 2.925170 AGAGGAACTGCACCGGCT 60.925 61.111 0.00 0.00 41.55 5.52
1920 2508 3.334054 GGGAGCTCCACCTTGGCT 61.334 66.667 33.29 0.00 37.47 4.75
1941 2529 4.794439 GCCGGGCGCAATTGGTTC 62.794 66.667 10.83 0.00 37.47 3.62
1969 2557 2.048503 GTTGTCGGCTGTAGCGGT 60.049 61.111 10.60 0.00 43.26 5.68
1996 2590 1.552799 TTCTGCTGATCCTCGCCCAA 61.553 55.000 0.00 0.00 0.00 4.12
2095 2689 4.988598 CTCACCACTGGCGCCGTT 62.989 66.667 23.90 8.08 0.00 4.44
2214 2808 5.687780 TGCTTCACATCATAATCATGACCT 58.312 37.500 0.00 0.00 43.89 3.85
2265 2859 2.710096 TAGAGAATTTGGAAGCCCGG 57.290 50.000 0.00 0.00 34.29 5.73
2440 3037 0.991146 ACACATGGTGCATAGGGTGA 59.009 50.000 15.44 0.00 36.98 4.02
2444 3041 9.371136 CTAATAGTAATACACATGGTGCATAGG 57.629 37.037 0.00 0.00 36.98 2.57
2452 3053 7.878127 CCCAACTCCTAATAGTAATACACATGG 59.122 40.741 0.00 0.00 0.00 3.66
2463 3064 7.928873 TCAGATTTTTCCCAACTCCTAATAGT 58.071 34.615 0.00 0.00 0.00 2.12
2811 3414 9.884814 ACTGTCTTCCAAGGACTAACTATATAT 57.115 33.333 0.00 0.00 35.04 0.86
2812 3415 9.132923 CACTGTCTTCCAAGGACTAACTATATA 57.867 37.037 0.00 0.00 35.04 0.86
2813 3416 7.839705 TCACTGTCTTCCAAGGACTAACTATAT 59.160 37.037 0.00 0.00 35.04 0.86
2814 3417 7.122353 GTCACTGTCTTCCAAGGACTAACTATA 59.878 40.741 0.00 0.00 35.04 1.31
2815 3418 6.017192 TCACTGTCTTCCAAGGACTAACTAT 58.983 40.000 0.00 0.00 35.04 2.12
2953 3556 5.551233 CATCGGATTGGATTAGGTATGTGT 58.449 41.667 0.00 0.00 0.00 3.72
2954 3557 4.393062 GCATCGGATTGGATTAGGTATGTG 59.607 45.833 0.00 0.00 0.00 3.21
3241 3854 9.754382 CAATGTTAATCATTTCTTCCCTAATGG 57.246 33.333 0.00 0.00 43.33 3.16
3258 3871 9.883142 TCCTCAAAAAGAAAACACAATGTTAAT 57.117 25.926 0.00 0.00 40.14 1.40
3261 3874 8.614469 TTTCCTCAAAAAGAAAACACAATGTT 57.386 26.923 0.00 0.00 43.41 2.71
3374 3987 6.753744 TGTCATCATCATCTTTGAGTAGTTCG 59.246 38.462 0.00 0.00 34.73 3.95
3500 4113 4.002506 TGGTCGTCGCTGCCATGT 62.003 61.111 0.00 0.00 0.00 3.21
3547 4160 0.176449 CTGCTCCGATGACATGACCA 59.824 55.000 0.00 0.00 0.00 4.02
3554 4167 1.142748 CCAGTCCTGCTCCGATGAC 59.857 63.158 0.00 0.00 0.00 3.06
3651 4264 4.765856 ACCATATATAGAACGCCTCGAGTT 59.234 41.667 12.31 0.00 34.07 3.01
3692 4306 6.016777 GCATCAAAACAGACCCCTCATAATAG 60.017 42.308 0.00 0.00 0.00 1.73
3693 4307 5.827797 GCATCAAAACAGACCCCTCATAATA 59.172 40.000 0.00 0.00 0.00 0.98
3747 4362 6.840780 ACCTCCATTTCGATCAAAAGAAAT 57.159 33.333 0.00 0.00 44.91 2.17
3885 4551 3.213506 TGGCTTATTTCGGGTCATCATG 58.786 45.455 0.00 0.00 0.00 3.07
3909 4575 6.478344 TGTGAAAATTTGGTTGAACTGTATGC 59.522 34.615 0.00 0.00 0.00 3.14
3916 4582 6.986231 AGATCCTTGTGAAAATTTGGTTGAAC 59.014 34.615 0.00 0.00 0.00 3.18
4007 4674 3.945921 TCGGAGACACTCGAACTCATAAT 59.054 43.478 0.00 0.00 32.11 1.28
4060 4727 6.569179 ATGTGTTAGGCGTTTGTTCTAATT 57.431 33.333 0.00 0.00 0.00 1.40
4068 4735 4.223320 AGTTGAATGTGTTAGGCGTTTG 57.777 40.909 0.00 0.00 0.00 2.93
4080 4747 3.740115 AGAGTACGCCAAAGTTGAATGT 58.260 40.909 0.00 0.00 0.00 2.71
4138 4807 8.462143 TCTCTTTGATGTTACATTACGAGTTC 57.538 34.615 0.00 0.00 0.00 3.01
4222 5040 3.189618 TCGTAGCCGAGACTATGAGAA 57.810 47.619 0.00 0.00 38.40 2.87
4235 5053 6.979465 ACTATACCAGTCTTAATTCGTAGCC 58.021 40.000 0.00 0.00 28.33 3.93
4435 5254 1.952296 CTATCATGTTTCCAGCTGGCC 59.048 52.381 28.91 17.74 34.44 5.36
4436 5255 2.615912 GACTATCATGTTTCCAGCTGGC 59.384 50.000 28.91 14.89 34.44 4.85
4462 5281 8.993121 GTACATAACTGATGCTAATTATGTGCT 58.007 33.333 15.35 0.00 44.18 4.40
4480 5299 0.755079 GGGACGGGGGAGTACATAAC 59.245 60.000 0.00 0.00 0.00 1.89
4492 5311 2.027929 TGTTGTTACACTATGGGACGGG 60.028 50.000 0.00 0.00 0.00 5.28
4601 5421 2.867287 TGTGCACAAACTGTCCATTG 57.133 45.000 19.28 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.