Multiple sequence alignment - TraesCS7B01G029500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G029500 chr7B 100.000 4660 0 0 1 4660 28063201 28058542 0.000000e+00 8606.0
1 TraesCS7B01G029500 chr7B 98.077 104 2 0 1 104 491400878 491400775 1.030000e-41 182.0
2 TraesCS7B01G029500 chr7B 91.837 49 1 1 106 151 385507391 385507439 1.080000e-06 65.8
3 TraesCS7B01G029500 chr7A 90.039 2028 139 40 2360 4379 83292906 83290934 0.000000e+00 2567.0
4 TraesCS7B01G029500 chr7A 94.148 1555 41 24 151 1667 83299674 83298132 0.000000e+00 2322.0
5 TraesCS7B01G029500 chr7A 98.438 320 5 0 2045 2364 83298141 83297822 8.750000e-157 564.0
6 TraesCS7B01G029500 chr7A 79.195 596 95 23 3058 3637 58235499 58236081 2.030000e-103 387.0
7 TraesCS7B01G029500 chr7A 84.641 306 38 6 2045 2341 58234513 58234818 3.530000e-76 296.0
8 TraesCS7B01G029500 chr7A 75.281 356 75 8 3359 3705 83494100 83493749 1.740000e-34 158.0
9 TraesCS7B01G029500 chr7D 93.178 1246 63 13 151 1390 80716235 80715006 0.000000e+00 1810.0
10 TraesCS7B01G029500 chr7D 88.109 1539 137 20 2044 3547 80714717 80713190 0.000000e+00 1786.0
11 TraesCS7B01G029500 chr7D 81.573 445 45 19 3474 3914 80512437 80512026 2.690000e-87 333.0
12 TraesCS7B01G029500 chr7D 76.462 650 112 22 3061 3698 54758815 54758195 9.730000e-82 315.0
13 TraesCS7B01G029500 chr7D 95.192 104 5 0 1 104 223228710 223228607 1.040000e-36 165.0
14 TraesCS7B01G029500 chr7D 81.250 192 26 7 3729 3914 80713020 80712833 3.760000e-31 147.0
15 TraesCS7B01G029500 chr7D 91.111 45 1 1 109 150 223228504 223228548 1.810000e-04 58.4
16 TraesCS7B01G029500 chr7D 100.000 29 0 0 122 150 223228736 223228708 2.000000e-03 54.7
17 TraesCS7B01G029500 chrUn 81.607 1033 157 18 2496 3523 108619989 108620993 0.000000e+00 824.0
18 TraesCS7B01G029500 chrUn 81.937 991 126 27 437 1390 108754633 108753659 0.000000e+00 789.0
19 TraesCS7B01G029500 chrUn 81.809 973 142 27 425 1378 108618406 108619362 0.000000e+00 784.0
20 TraesCS7B01G029500 chrUn 81.087 883 137 23 2051 2923 108795673 108794811 0.000000e+00 678.0
21 TraesCS7B01G029500 chrUn 84.722 504 63 10 431 921 108745912 108746414 4.190000e-135 492.0
22 TraesCS7B01G029500 chrUn 78.667 750 122 22 441 1158 108723833 108723090 9.130000e-127 464.0
23 TraesCS7B01G029500 chrUn 87.848 395 48 0 984 1378 108800293 108799899 9.130000e-127 464.0
24 TraesCS7B01G029500 chrUn 81.873 502 67 14 437 920 108800903 108800408 7.260000e-108 401.0
25 TraesCS7B01G029500 chrUn 79.808 520 73 24 3057 3569 108752195 108751701 2.670000e-92 350.0
26 TraesCS7B01G029500 chrUn 81.892 370 57 4 3191 3559 108794521 108794161 2.110000e-78 303.0
27 TraesCS7B01G029500 chrUn 81.432 377 58 5 2052 2419 108747239 108747612 9.800000e-77 298.0
28 TraesCS7B01G029500 chrUn 84.536 291 42 3 2051 2338 108753399 108753109 7.630000e-73 285.0
29 TraesCS7B01G029500 chrUn 91.071 112 10 0 1549 1660 108747117 108747228 8.080000e-33 152.0
30 TraesCS7B01G029500 chrUn 87.273 110 14 0 1558 1667 108795779 108795670 4.900000e-25 126.0
31 TraesCS7B01G029500 chr5A 82.430 996 121 28 431 1378 705142832 705143821 0.000000e+00 821.0
32 TraesCS7B01G029500 chr5A 82.190 977 140 19 431 1390 704948098 704949057 0.000000e+00 809.0
33 TraesCS7B01G029500 chr5A 84.314 510 63 10 431 924 704975628 704975120 2.520000e-132 483.0
34 TraesCS7B01G029500 chr5A 80.416 577 92 11 3058 3622 705146572 705147139 2.010000e-113 420.0
35 TraesCS7B01G029500 chr5A 87.838 296 36 0 2048 2343 705144215 705144510 9.600000e-92 348.0
36 TraesCS7B01G029500 chr5A 79.576 519 76 19 3057 3569 704950509 704951003 1.240000e-90 344.0
37 TraesCS7B01G029500 chr5A 85.185 297 41 3 2045 2338 704949311 704949607 7.580000e-78 302.0
38 TraesCS7B01G029500 chr5A 78.427 496 79 18 3057 3550 704973224 704972755 9.800000e-77 298.0
39 TraesCS7B01G029500 chr5A 76.818 440 67 19 3057 3494 680216868 680216462 1.020000e-51 215.0
40 TraesCS7B01G029500 chr5A 86.325 117 16 0 1549 1665 704974429 704974313 1.360000e-25 128.0
41 TraesCS7B01G029500 chr4D 81.990 955 125 29 437 1378 499460413 499459493 0.000000e+00 767.0
42 TraesCS7B01G029500 chr4D 79.076 693 133 11 3975 4660 487200251 487199564 2.540000e-127 466.0
43 TraesCS7B01G029500 chr4D 78.801 717 119 25 3952 4657 85860139 85860833 7.110000e-123 451.0
44 TraesCS7B01G029500 chr4D 78.981 471 71 18 3057 3522 499457953 499457506 3.530000e-76 296.0
45 TraesCS7B01G029500 chr4D 89.744 78 6 2 168 245 499460596 499460521 1.070000e-16 99.0
46 TraesCS7B01G029500 chr5B 99.476 382 2 0 1663 2044 63249158 63248777 0.000000e+00 695.0
47 TraesCS7B01G029500 chr5B 97.990 398 6 2 1652 2048 599111769 599112165 0.000000e+00 689.0
48 TraesCS7B01G029500 chr5B 80.758 712 117 16 3952 4657 505218683 505219380 5.310000e-149 538.0
49 TraesCS7B01G029500 chr5B 79.138 719 116 27 3952 4657 708194394 708195091 2.540000e-127 466.0
50 TraesCS7B01G029500 chr5B 79.056 678 132 9 3961 4632 657394929 657394256 1.530000e-124 457.0
51 TraesCS7B01G029500 chr5B 96.154 104 4 0 1 104 497369281 497369384 2.230000e-38 171.0
52 TraesCS7B01G029500 chr1B 99.476 382 2 0 1663 2044 6112050 6112431 0.000000e+00 695.0
53 TraesCS7B01G029500 chr1B 99.217 383 3 0 1662 2044 99077957 99078339 0.000000e+00 691.0
54 TraesCS7B01G029500 chr1B 99.219 384 2 1 1662 2044 570441967 570441584 0.000000e+00 691.0
55 TraesCS7B01G029500 chr1B 99.474 380 2 0 1665 2044 681552408 681552787 0.000000e+00 691.0
56 TraesCS7B01G029500 chr1B 97.980 396 7 1 1666 2061 119248323 119248717 0.000000e+00 686.0
57 TraesCS7B01G029500 chr6A 99.474 380 2 0 1666 2045 13876666 13877045 0.000000e+00 691.0
58 TraesCS7B01G029500 chr6A 80.000 690 119 16 3974 4657 158307356 158306680 4.190000e-135 492.0
59 TraesCS7B01G029500 chr6A 86.029 408 57 0 971 1378 585971719 585972126 5.540000e-119 438.0
60 TraesCS7B01G029500 chr6A 78.797 665 114 20 2500 3146 585972874 585973529 5.570000e-114 422.0
61 TraesCS7B01G029500 chr6A 91.234 308 25 2 612 918 585971267 585971573 7.210000e-113 418.0
62 TraesCS7B01G029500 chr6A 78.689 305 54 7 3220 3523 585973558 585973852 4.760000e-45 193.0
63 TraesCS7B01G029500 chr3B 99.474 380 2 0 1666 2045 33340215 33340594 0.000000e+00 691.0
64 TraesCS7B01G029500 chr3B 79.552 714 122 19 3952 4657 519864687 519863990 5.420000e-134 488.0
65 TraesCS7B01G029500 chr3B 99.038 104 1 0 1 104 582272905 582273008 2.210000e-43 187.0
66 TraesCS7B01G029500 chr3B 99.038 104 1 0 1 104 661988388 661988491 2.210000e-43 187.0
67 TraesCS7B01G029500 chr3B 91.304 46 1 1 109 151 661988594 661988549 5.040000e-05 60.2
68 TraesCS7B01G029500 chr2D 80.085 708 129 12 3960 4660 626770212 626769510 2.490000e-142 516.0
69 TraesCS7B01G029500 chr2D 84.493 503 64 12 431 920 584757986 584758487 7.010000e-133 484.0
70 TraesCS7B01G029500 chr2D 88.974 390 43 0 989 1378 584758583 584758972 2.520000e-132 483.0
71 TraesCS7B01G029500 chr2D 78.100 758 124 23 3058 3800 584768777 584769507 4.280000e-120 442.0
72 TraesCS7B01G029500 chr2D 88.176 296 35 0 2048 2343 584759350 584759645 2.060000e-93 353.0
73 TraesCS7B01G029500 chr4B 84.891 503 63 12 430 924 665302743 665302246 3.240000e-136 496.0
74 TraesCS7B01G029500 chr4B 87.437 398 50 0 981 1378 665302219 665301822 4.250000e-125 459.0
75 TraesCS7B01G029500 chr4B 80.672 357 60 3 2052 2399 665301421 665301065 7.690000e-68 268.0
76 TraesCS7B01G029500 chr4B 95.192 104 4 1 1 104 389780003 389780105 3.730000e-36 163.0
77 TraesCS7B01G029500 chr4B 84.106 151 22 2 3374 3523 665300734 665300585 1.350000e-30 145.0
78 TraesCS7B01G029500 chr4B 88.889 117 13 0 1549 1665 665301543 665301427 1.350000e-30 145.0
79 TraesCS7B01G029500 chr4B 94.545 55 3 0 168 222 642407026 642406972 8.310000e-13 86.1
80 TraesCS7B01G029500 chr4B 91.111 45 1 1 110 151 389780207 389780163 1.810000e-04 58.4
81 TraesCS7B01G029500 chr2B 88.462 390 45 0 989 1378 704763666 704764055 5.460000e-129 472.0
82 TraesCS7B01G029500 chr2B 81.930 570 82 10 3058 3615 704766257 704766817 3.280000e-126 462.0
83 TraesCS7B01G029500 chr2B 83.626 513 59 13 431 920 704763060 704763570 4.250000e-125 459.0
84 TraesCS7B01G029500 chr1D 78.440 705 135 14 3960 4657 479536784 479536090 1.190000e-120 444.0
85 TraesCS7B01G029500 chr4A 75.328 458 81 18 3058 3514 670944785 670945211 1.710000e-44 191.0
86 TraesCS7B01G029500 chr4A 98.077 104 2 0 1 104 378591158 378591055 1.030000e-41 182.0
87 TraesCS7B01G029500 chr4A 91.304 46 1 1 109 151 378590952 378590997 5.040000e-05 60.2
88 TraesCS7B01G029500 chr3A 97.115 104 3 0 1 104 716371607 716371710 4.790000e-40 176.0
89 TraesCS7B01G029500 chr3A 91.304 46 1 1 109 151 716371813 716371768 5.040000e-05 60.2
90 TraesCS7B01G029500 chr3D 95.192 104 5 0 1 104 494392570 494392467 1.040000e-36 165.0
91 TraesCS7B01G029500 chr3D 90.909 44 1 1 111 151 494392366 494392409 6.510000e-04 56.5
92 TraesCS7B01G029500 chr3D 90.909 44 1 1 110 150 494394949 494394992 6.510000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G029500 chr7B 28058542 28063201 4659 True 8606.000000 8606 100.000000 1 4660 1 chr7B.!!$R1 4659
1 TraesCS7B01G029500 chr7A 83290934 83292906 1972 True 2567.000000 2567 90.039000 2360 4379 1 chr7A.!!$R1 2019
2 TraesCS7B01G029500 chr7A 83297822 83299674 1852 True 1443.000000 2322 96.293000 151 2364 2 chr7A.!!$R3 2213
3 TraesCS7B01G029500 chr7A 58234513 58236081 1568 False 341.500000 387 81.918000 2045 3637 2 chr7A.!!$F1 1592
4 TraesCS7B01G029500 chr7D 80712833 80716235 3402 True 1247.666667 1810 87.512333 151 3914 3 chr7D.!!$R3 3763
5 TraesCS7B01G029500 chr7D 54758195 54758815 620 True 315.000000 315 76.462000 3061 3698 1 chr7D.!!$R1 637
6 TraesCS7B01G029500 chrUn 108618406 108620993 2587 False 804.000000 824 81.708000 425 3523 2 chrUn.!!$F1 3098
7 TraesCS7B01G029500 chrUn 108751701 108754633 2932 True 474.666667 789 82.093667 437 3569 3 chrUn.!!$R2 3132
8 TraesCS7B01G029500 chrUn 108723090 108723833 743 True 464.000000 464 78.667000 441 1158 1 chrUn.!!$R1 717
9 TraesCS7B01G029500 chrUn 108799899 108800903 1004 True 432.500000 464 84.860500 437 1378 2 chrUn.!!$R4 941
10 TraesCS7B01G029500 chrUn 108794161 108795779 1618 True 369.000000 678 83.417333 1558 3559 3 chrUn.!!$R3 2001
11 TraesCS7B01G029500 chrUn 108745912 108747612 1700 False 314.000000 492 85.741667 431 2419 3 chrUn.!!$F2 1988
12 TraesCS7B01G029500 chr5A 705142832 705147139 4307 False 529.666667 821 83.561333 431 3622 3 chr5A.!!$F2 3191
13 TraesCS7B01G029500 chr5A 704948098 704951003 2905 False 485.000000 809 82.317000 431 3569 3 chr5A.!!$F1 3138
14 TraesCS7B01G029500 chr5A 704972755 704975628 2873 True 303.000000 483 83.022000 431 3550 3 chr5A.!!$R2 3119
15 TraesCS7B01G029500 chr4D 487199564 487200251 687 True 466.000000 466 79.076000 3975 4660 1 chr4D.!!$R1 685
16 TraesCS7B01G029500 chr4D 85860139 85860833 694 False 451.000000 451 78.801000 3952 4657 1 chr4D.!!$F1 705
17 TraesCS7B01G029500 chr4D 499457506 499460596 3090 True 387.333333 767 83.571667 168 3522 3 chr4D.!!$R2 3354
18 TraesCS7B01G029500 chr5B 505218683 505219380 697 False 538.000000 538 80.758000 3952 4657 1 chr5B.!!$F2 705
19 TraesCS7B01G029500 chr5B 708194394 708195091 697 False 466.000000 466 79.138000 3952 4657 1 chr5B.!!$F4 705
20 TraesCS7B01G029500 chr5B 657394256 657394929 673 True 457.000000 457 79.056000 3961 4632 1 chr5B.!!$R2 671
21 TraesCS7B01G029500 chr6A 158306680 158307356 676 True 492.000000 492 80.000000 3974 4657 1 chr6A.!!$R1 683
22 TraesCS7B01G029500 chr6A 585971267 585973852 2585 False 367.750000 438 83.687250 612 3523 4 chr6A.!!$F2 2911
23 TraesCS7B01G029500 chr3B 519863990 519864687 697 True 488.000000 488 79.552000 3952 4657 1 chr3B.!!$R1 705
24 TraesCS7B01G029500 chr2D 626769510 626770212 702 True 516.000000 516 80.085000 3960 4660 1 chr2D.!!$R1 700
25 TraesCS7B01G029500 chr2D 584768777 584769507 730 False 442.000000 442 78.100000 3058 3800 1 chr2D.!!$F1 742
26 TraesCS7B01G029500 chr2D 584757986 584759645 1659 False 440.000000 484 87.214333 431 2343 3 chr2D.!!$F2 1912
27 TraesCS7B01G029500 chr4B 665300585 665302743 2158 True 302.600000 496 85.199000 430 3523 5 chr4B.!!$R3 3093
28 TraesCS7B01G029500 chr2B 704763060 704766817 3757 False 464.333333 472 84.672667 431 3615 3 chr2B.!!$F1 3184
29 TraesCS7B01G029500 chr1D 479536090 479536784 694 True 444.000000 444 78.440000 3960 4657 1 chr1D.!!$R1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.034477 AAGATTTTGGGCCGTCGGAT 60.034 50.0 17.49 0.0 0.0 4.18 F
25 26 0.034477 ATTTTGGGCCGTCGGATTCT 60.034 50.0 17.49 0.0 0.0 2.40 F
1743 2478 0.106149 GCCCCTCGGTAAATCGTCAT 59.894 55.0 0.00 0.0 0.0 3.06 F
2733 4957 0.103026 CGCCGTCATTCTCATCCTGA 59.897 55.0 0.00 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 2459 0.106149 ATGACGATTTACCGAGGGGC 59.894 55.000 0.0 0.0 36.48 5.80 R
1991 2726 1.768870 CCGAGGGGGACTGATAAATGT 59.231 52.381 0.0 0.0 38.47 2.71 R
2932 5156 1.073763 TCCTCTGTGACAAATGTGGGG 59.926 52.381 0.0 0.0 0.00 4.96 R
4323 6803 0.836400 AGTCATTCGGGGGTGTCAGT 60.836 55.000 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.444836 TACAAGATTTTGGGCCGTCG 58.555 50.000 0.00 0.00 38.66 5.12
20 21 1.241315 ACAAGATTTTGGGCCGTCGG 61.241 55.000 6.99 6.99 38.66 4.79
21 22 0.958382 CAAGATTTTGGGCCGTCGGA 60.958 55.000 17.49 0.00 0.00 4.55
22 23 0.034477 AAGATTTTGGGCCGTCGGAT 60.034 50.000 17.49 0.00 0.00 4.18
23 24 0.034477 AGATTTTGGGCCGTCGGATT 60.034 50.000 17.49 0.00 0.00 3.01
24 25 0.380733 GATTTTGGGCCGTCGGATTC 59.619 55.000 17.49 3.64 0.00 2.52
25 26 0.034477 ATTTTGGGCCGTCGGATTCT 60.034 50.000 17.49 0.00 0.00 2.40
26 27 0.675522 TTTTGGGCCGTCGGATTCTC 60.676 55.000 17.49 0.00 0.00 2.87
27 28 1.832719 TTTGGGCCGTCGGATTCTCA 61.833 55.000 17.49 0.00 0.00 3.27
28 29 2.107141 GGGCCGTCGGATTCTCAG 59.893 66.667 17.49 0.00 0.00 3.35
29 30 2.423898 GGGCCGTCGGATTCTCAGA 61.424 63.158 17.49 0.00 0.00 3.27
30 31 1.742768 GGCCGTCGGATTCTCAGAT 59.257 57.895 17.49 0.00 0.00 2.90
31 32 0.319125 GGCCGTCGGATTCTCAGATC 60.319 60.000 17.49 0.00 0.00 2.75
32 33 0.385751 GCCGTCGGATTCTCAGATCA 59.614 55.000 17.49 0.00 0.00 2.92
33 34 1.601663 GCCGTCGGATTCTCAGATCAG 60.602 57.143 17.49 0.00 0.00 2.90
34 35 1.950216 CCGTCGGATTCTCAGATCAGA 59.050 52.381 4.91 0.00 0.00 3.27
35 36 2.287308 CCGTCGGATTCTCAGATCAGAC 60.287 54.545 4.91 7.71 43.39 3.51
36 37 2.993545 GTCGGATTCTCAGATCAGACG 58.006 52.381 0.00 0.00 39.94 4.18
37 38 1.950216 TCGGATTCTCAGATCAGACGG 59.050 52.381 0.00 0.00 0.00 4.79
38 39 1.601663 CGGATTCTCAGATCAGACGGC 60.602 57.143 0.00 0.00 0.00 5.68
39 40 1.686052 GGATTCTCAGATCAGACGGCT 59.314 52.381 0.00 0.00 0.00 5.52
40 41 2.288152 GGATTCTCAGATCAGACGGCTC 60.288 54.545 0.00 0.00 0.00 4.70
41 42 2.136298 TTCTCAGATCAGACGGCTCT 57.864 50.000 0.00 0.00 0.00 4.09
42 43 1.674359 TCTCAGATCAGACGGCTCTC 58.326 55.000 0.00 0.00 0.00 3.20
43 44 1.065126 TCTCAGATCAGACGGCTCTCA 60.065 52.381 0.00 0.00 0.00 3.27
44 45 1.747924 CTCAGATCAGACGGCTCTCAA 59.252 52.381 0.00 0.00 0.00 3.02
45 46 1.474478 TCAGATCAGACGGCTCTCAAC 59.526 52.381 0.00 0.00 0.00 3.18
46 47 1.203287 CAGATCAGACGGCTCTCAACA 59.797 52.381 0.00 0.00 0.00 3.33
47 48 1.895798 AGATCAGACGGCTCTCAACAA 59.104 47.619 0.00 0.00 0.00 2.83
48 49 1.996191 GATCAGACGGCTCTCAACAAC 59.004 52.381 0.00 0.00 0.00 3.32
49 50 1.040646 TCAGACGGCTCTCAACAACT 58.959 50.000 0.00 0.00 0.00 3.16
50 51 1.000163 TCAGACGGCTCTCAACAACTC 60.000 52.381 0.00 0.00 0.00 3.01
51 52 1.000283 CAGACGGCTCTCAACAACTCT 60.000 52.381 0.00 0.00 0.00 3.24
52 53 1.000283 AGACGGCTCTCAACAACTCTG 60.000 52.381 0.00 0.00 0.00 3.35
53 54 0.601311 ACGGCTCTCAACAACTCTGC 60.601 55.000 0.00 0.00 0.00 4.26
54 55 0.601046 CGGCTCTCAACAACTCTGCA 60.601 55.000 0.00 0.00 0.00 4.41
55 56 1.597742 GGCTCTCAACAACTCTGCAA 58.402 50.000 0.00 0.00 0.00 4.08
56 57 1.265365 GGCTCTCAACAACTCTGCAAC 59.735 52.381 0.00 0.00 0.00 4.17
57 58 1.070309 GCTCTCAACAACTCTGCAACG 60.070 52.381 0.00 0.00 0.00 4.10
58 59 2.205074 CTCTCAACAACTCTGCAACGT 58.795 47.619 0.00 0.00 0.00 3.99
59 60 2.609459 CTCTCAACAACTCTGCAACGTT 59.391 45.455 0.00 0.00 0.00 3.99
60 61 3.006940 TCTCAACAACTCTGCAACGTTT 58.993 40.909 0.00 0.00 0.00 3.60
61 62 3.100817 CTCAACAACTCTGCAACGTTTG 58.899 45.455 0.00 0.00 0.00 2.93
84 85 3.876309 AAAAAGCCTACAAGGAGTCCA 57.124 42.857 12.86 0.00 37.67 4.02
85 86 3.876309 AAAAGCCTACAAGGAGTCCAA 57.124 42.857 12.86 0.00 37.67 3.53
86 87 3.876309 AAAGCCTACAAGGAGTCCAAA 57.124 42.857 12.86 0.00 37.67 3.28
87 88 3.876309 AAGCCTACAAGGAGTCCAAAA 57.124 42.857 12.86 0.00 37.67 2.44
88 89 3.876309 AGCCTACAAGGAGTCCAAAAA 57.124 42.857 12.86 0.00 37.67 1.94
89 90 4.388577 AGCCTACAAGGAGTCCAAAAAT 57.611 40.909 12.86 0.00 37.67 1.82
90 91 4.336280 AGCCTACAAGGAGTCCAAAAATC 58.664 43.478 12.86 0.00 37.67 2.17
91 92 4.079253 GCCTACAAGGAGTCCAAAAATCA 58.921 43.478 12.86 0.00 37.67 2.57
92 93 4.082733 GCCTACAAGGAGTCCAAAAATCAC 60.083 45.833 12.86 0.00 37.67 3.06
93 94 4.154195 CCTACAAGGAGTCCAAAAATCACG 59.846 45.833 12.86 0.00 37.67 4.35
94 95 2.293399 ACAAGGAGTCCAAAAATCACGC 59.707 45.455 12.86 0.00 0.00 5.34
95 96 2.270352 AGGAGTCCAAAAATCACGCA 57.730 45.000 12.86 0.00 0.00 5.24
96 97 1.880027 AGGAGTCCAAAAATCACGCAC 59.120 47.619 12.86 0.00 0.00 5.34
97 98 1.606668 GGAGTCCAAAAATCACGCACA 59.393 47.619 3.60 0.00 0.00 4.57
98 99 2.034053 GGAGTCCAAAAATCACGCACAA 59.966 45.455 3.60 0.00 0.00 3.33
99 100 3.300009 GAGTCCAAAAATCACGCACAAG 58.700 45.455 0.00 0.00 0.00 3.16
100 101 2.687935 AGTCCAAAAATCACGCACAAGT 59.312 40.909 0.00 0.00 0.00 3.16
101 102 3.042887 GTCCAAAAATCACGCACAAGTC 58.957 45.455 0.00 0.00 0.00 3.01
102 103 2.034053 TCCAAAAATCACGCACAAGTCC 59.966 45.455 0.00 0.00 0.00 3.85
103 104 2.223688 CCAAAAATCACGCACAAGTCCA 60.224 45.455 0.00 0.00 0.00 4.02
104 105 3.552684 CCAAAAATCACGCACAAGTCCAT 60.553 43.478 0.00 0.00 0.00 3.41
105 106 4.320861 CCAAAAATCACGCACAAGTCCATA 60.321 41.667 0.00 0.00 0.00 2.74
106 107 5.401550 CAAAAATCACGCACAAGTCCATAT 58.598 37.500 0.00 0.00 0.00 1.78
107 108 6.404184 CCAAAAATCACGCACAAGTCCATATA 60.404 38.462 0.00 0.00 0.00 0.86
108 109 5.991328 AAATCACGCACAAGTCCATATAG 57.009 39.130 0.00 0.00 0.00 1.31
109 110 3.452755 TCACGCACAAGTCCATATAGG 57.547 47.619 0.00 0.00 39.47 2.57
110 111 2.102420 TCACGCACAAGTCCATATAGGG 59.898 50.000 0.00 0.00 38.24 3.53
111 112 2.102420 CACGCACAAGTCCATATAGGGA 59.898 50.000 0.93 0.93 38.24 4.20
112 113 2.365617 ACGCACAAGTCCATATAGGGAG 59.634 50.000 6.32 0.00 37.71 4.30
113 114 2.628178 CGCACAAGTCCATATAGGGAGA 59.372 50.000 6.32 0.00 37.71 3.71
114 115 3.305676 CGCACAAGTCCATATAGGGAGAG 60.306 52.174 6.32 2.40 37.71 3.20
115 116 3.643792 GCACAAGTCCATATAGGGAGAGT 59.356 47.826 6.32 3.05 37.71 3.24
116 117 4.833380 GCACAAGTCCATATAGGGAGAGTA 59.167 45.833 6.32 0.00 37.71 2.59
117 118 5.482175 GCACAAGTCCATATAGGGAGAGTAT 59.518 44.000 6.32 0.00 37.71 2.12
118 119 6.350612 GCACAAGTCCATATAGGGAGAGTATC 60.351 46.154 6.32 0.00 37.71 2.24
119 120 6.951198 CACAAGTCCATATAGGGAGAGTATCT 59.049 42.308 6.32 0.00 43.18 1.98
120 121 8.110271 CACAAGTCCATATAGGGAGAGTATCTA 58.890 40.741 6.32 0.00 41.02 1.98
138 139 8.398878 AGTATCTACTACCAAGACTTAGATGC 57.601 38.462 6.27 5.25 34.13 3.91
139 140 8.221944 AGTATCTACTACCAAGACTTAGATGCT 58.778 37.037 7.71 7.71 37.39 3.79
140 141 9.504708 GTATCTACTACCAAGACTTAGATGCTA 57.495 37.037 6.27 0.00 32.32 3.49
141 142 7.804843 TCTACTACCAAGACTTAGATGCTAC 57.195 40.000 0.00 0.00 0.00 3.58
142 143 5.855740 ACTACCAAGACTTAGATGCTACC 57.144 43.478 0.00 0.00 0.00 3.18
143 144 3.802948 ACCAAGACTTAGATGCTACCG 57.197 47.619 0.00 0.00 0.00 4.02
144 145 3.097614 ACCAAGACTTAGATGCTACCGT 58.902 45.455 0.00 0.00 0.00 4.83
145 146 3.119101 ACCAAGACTTAGATGCTACCGTG 60.119 47.826 0.00 0.00 0.00 4.94
146 147 3.130516 CCAAGACTTAGATGCTACCGTGA 59.869 47.826 0.00 0.00 0.00 4.35
147 148 4.202161 CCAAGACTTAGATGCTACCGTGAT 60.202 45.833 0.00 0.00 0.00 3.06
148 149 5.009710 CCAAGACTTAGATGCTACCGTGATA 59.990 44.000 0.00 0.00 0.00 2.15
149 150 5.692613 AGACTTAGATGCTACCGTGATAC 57.307 43.478 0.00 0.00 0.00 2.24
353 366 3.562343 ACATGCTGCTCTGATCAGATT 57.438 42.857 25.30 4.54 36.76 2.40
826 892 3.801997 CCCTCATGGCCGCCTTCT 61.802 66.667 11.61 0.00 0.00 2.85
937 1126 1.203112 TGGAGAGACTCTGCAAGGAGT 60.203 52.381 22.87 8.26 41.94 3.85
1160 1396 2.460918 CTACCACGCATTCTTCTACGG 58.539 52.381 0.00 0.00 0.00 4.02
1628 2345 1.538876 TTACCAGGCAGGGCTGAGT 60.539 57.895 22.72 19.17 43.89 3.41
1667 2402 1.531748 GGAAGGGCATCCGGATCAA 59.468 57.895 15.88 0.00 38.33 2.57
1668 2403 0.536006 GGAAGGGCATCCGGATCAAG 60.536 60.000 15.88 4.74 38.33 3.02
1669 2404 0.536006 GAAGGGCATCCGGATCAAGG 60.536 60.000 15.88 4.32 38.33 3.61
1670 2405 1.281925 AAGGGCATCCGGATCAAGGT 61.282 55.000 15.88 0.00 38.33 3.50
1671 2406 1.227383 GGGCATCCGGATCAAGGTT 59.773 57.895 15.88 0.00 0.00 3.50
1672 2407 0.395724 GGGCATCCGGATCAAGGTTT 60.396 55.000 15.88 0.00 0.00 3.27
1673 2408 1.474330 GGCATCCGGATCAAGGTTTT 58.526 50.000 15.88 0.00 0.00 2.43
1674 2409 1.134946 GGCATCCGGATCAAGGTTTTG 59.865 52.381 15.88 2.27 35.57 2.44
1675 2410 1.134946 GCATCCGGATCAAGGTTTTGG 59.865 52.381 15.88 0.00 34.97 3.28
1676 2411 2.446435 CATCCGGATCAAGGTTTTGGT 58.554 47.619 15.88 0.00 34.97 3.67
1677 2412 2.668144 TCCGGATCAAGGTTTTGGTT 57.332 45.000 0.00 0.00 34.97 3.67
1678 2413 3.791953 TCCGGATCAAGGTTTTGGTTA 57.208 42.857 0.00 0.00 34.97 2.85
1679 2414 3.414269 TCCGGATCAAGGTTTTGGTTAC 58.586 45.455 0.00 0.00 34.97 2.50
1680 2415 2.490509 CCGGATCAAGGTTTTGGTTACC 59.509 50.000 0.00 0.00 34.97 2.85
1681 2416 3.150767 CGGATCAAGGTTTTGGTTACCA 58.849 45.455 0.00 0.00 38.16 3.25
1682 2417 3.190535 CGGATCAAGGTTTTGGTTACCAG 59.809 47.826 3.65 0.00 38.16 4.00
1683 2418 4.149598 GGATCAAGGTTTTGGTTACCAGT 58.850 43.478 3.65 0.00 38.16 4.00
1684 2419 4.217767 GGATCAAGGTTTTGGTTACCAGTC 59.782 45.833 3.65 0.00 38.16 3.51
1685 2420 3.207778 TCAAGGTTTTGGTTACCAGTCG 58.792 45.455 3.65 0.00 38.16 4.18
1686 2421 3.118334 TCAAGGTTTTGGTTACCAGTCGA 60.118 43.478 3.65 0.00 38.16 4.20
1687 2422 3.564053 AGGTTTTGGTTACCAGTCGAA 57.436 42.857 3.65 0.00 38.16 3.71
1688 2423 3.888583 AGGTTTTGGTTACCAGTCGAAA 58.111 40.909 3.65 0.00 38.16 3.46
1689 2424 4.466827 AGGTTTTGGTTACCAGTCGAAAT 58.533 39.130 3.65 0.00 38.16 2.17
1690 2425 4.891168 AGGTTTTGGTTACCAGTCGAAATT 59.109 37.500 3.65 0.00 38.16 1.82
1691 2426 5.361571 AGGTTTTGGTTACCAGTCGAAATTT 59.638 36.000 3.65 0.00 38.16 1.82
1692 2427 5.688621 GGTTTTGGTTACCAGTCGAAATTTC 59.311 40.000 3.65 8.20 33.81 2.17
1693 2428 6.267070 GTTTTGGTTACCAGTCGAAATTTCA 58.733 36.000 17.99 2.95 33.81 2.69
1694 2429 6.452494 TTTGGTTACCAGTCGAAATTTCAA 57.548 33.333 17.99 0.00 33.81 2.69
1695 2430 5.682943 TGGTTACCAGTCGAAATTTCAAG 57.317 39.130 17.99 3.07 0.00 3.02
1696 2431 5.369833 TGGTTACCAGTCGAAATTTCAAGA 58.630 37.500 17.99 5.43 0.00 3.02
1697 2432 6.001460 TGGTTACCAGTCGAAATTTCAAGAT 58.999 36.000 17.99 1.22 0.00 2.40
1698 2433 6.488683 TGGTTACCAGTCGAAATTTCAAGATT 59.511 34.615 17.99 2.59 0.00 2.40
1699 2434 7.013846 TGGTTACCAGTCGAAATTTCAAGATTT 59.986 33.333 17.99 0.99 32.16 2.17
1700 2435 7.537649 GGTTACCAGTCGAAATTTCAAGATTTC 59.462 37.037 17.99 0.00 40.80 2.17
1701 2436 6.884280 ACCAGTCGAAATTTCAAGATTTCT 57.116 33.333 17.99 0.14 41.61 2.52
1702 2437 6.903419 ACCAGTCGAAATTTCAAGATTTCTC 58.097 36.000 17.99 0.00 41.61 2.87
1703 2438 6.486657 ACCAGTCGAAATTTCAAGATTTCTCA 59.513 34.615 17.99 0.00 41.61 3.27
1704 2439 7.175641 ACCAGTCGAAATTTCAAGATTTCTCAT 59.824 33.333 17.99 0.00 41.61 2.90
1705 2440 7.484007 CCAGTCGAAATTTCAAGATTTCTCATG 59.516 37.037 17.99 0.00 41.61 3.07
1706 2441 7.484007 CAGTCGAAATTTCAAGATTTCTCATGG 59.516 37.037 17.99 0.00 41.61 3.66
1707 2442 7.175641 AGTCGAAATTTCAAGATTTCTCATGGT 59.824 33.333 17.99 0.00 41.61 3.55
1708 2443 7.809806 GTCGAAATTTCAAGATTTCTCATGGTT 59.190 33.333 17.99 0.00 41.61 3.67
1709 2444 9.008965 TCGAAATTTCAAGATTTCTCATGGTTA 57.991 29.630 17.99 0.00 41.61 2.85
1710 2445 9.065871 CGAAATTTCAAGATTTCTCATGGTTAC 57.934 33.333 17.99 0.00 41.61 2.50
1711 2446 9.358872 GAAATTTCAAGATTTCTCATGGTTACC 57.641 33.333 13.40 0.00 40.94 2.85
1712 2447 8.421249 AATTTCAAGATTTCTCATGGTTACCA 57.579 30.769 6.53 6.53 38.19 3.25
1713 2448 6.817765 TTCAAGATTTCTCATGGTTACCAC 57.182 37.500 6.10 0.00 35.80 4.16
1714 2449 4.935205 TCAAGATTTCTCATGGTTACCACG 59.065 41.667 6.10 0.00 35.80 4.94
1715 2450 4.553330 AGATTTCTCATGGTTACCACGT 57.447 40.909 6.10 0.00 35.80 4.49
1716 2451 5.670792 AGATTTCTCATGGTTACCACGTA 57.329 39.130 6.10 0.00 35.80 3.57
1717 2452 6.235231 AGATTTCTCATGGTTACCACGTAT 57.765 37.500 6.10 0.00 35.80 3.06
1718 2453 6.650120 AGATTTCTCATGGTTACCACGTATT 58.350 36.000 6.10 0.00 35.80 1.89
1719 2454 7.110155 AGATTTCTCATGGTTACCACGTATTT 58.890 34.615 6.10 0.00 35.80 1.40
1720 2455 6.730960 TTTCTCATGGTTACCACGTATTTC 57.269 37.500 6.10 0.00 35.80 2.17
1721 2456 4.761975 TCTCATGGTTACCACGTATTTCC 58.238 43.478 6.10 0.00 35.80 3.13
1722 2457 3.523547 TCATGGTTACCACGTATTTCCG 58.476 45.455 6.10 0.00 35.80 4.30
1723 2458 3.055963 TCATGGTTACCACGTATTTCCGT 60.056 43.478 6.10 0.00 42.87 4.69
1729 2464 3.395630 ACGTATTTCCGTGCCCCT 58.604 55.556 0.00 0.00 40.08 4.79
1730 2465 1.219935 ACGTATTTCCGTGCCCCTC 59.780 57.895 0.00 0.00 40.08 4.30
1731 2466 1.881252 CGTATTTCCGTGCCCCTCG 60.881 63.158 0.00 0.00 0.00 4.63
1733 2468 1.991167 TATTTCCGTGCCCCTCGGT 60.991 57.895 4.36 0.00 46.86 4.69
1734 2469 0.687098 TATTTCCGTGCCCCTCGGTA 60.687 55.000 4.36 0.00 46.86 4.02
1735 2470 1.555477 ATTTCCGTGCCCCTCGGTAA 61.555 55.000 4.36 1.98 46.86 2.85
1736 2471 1.766625 TTTCCGTGCCCCTCGGTAAA 61.767 55.000 4.36 2.21 46.86 2.01
1737 2472 1.555477 TTCCGTGCCCCTCGGTAAAT 61.555 55.000 4.36 0.00 46.86 1.40
1738 2473 1.523032 CCGTGCCCCTCGGTAAATC 60.523 63.158 0.00 0.00 42.62 2.17
1739 2474 1.881252 CGTGCCCCTCGGTAAATCG 60.881 63.158 0.00 0.00 0.00 3.34
1740 2475 1.219935 GTGCCCCTCGGTAAATCGT 59.780 57.895 0.00 0.00 0.00 3.73
1741 2476 0.808847 GTGCCCCTCGGTAAATCGTC 60.809 60.000 0.00 0.00 0.00 4.20
1742 2477 1.259142 TGCCCCTCGGTAAATCGTCA 61.259 55.000 0.00 0.00 0.00 4.35
1743 2478 0.106149 GCCCCTCGGTAAATCGTCAT 59.894 55.000 0.00 0.00 0.00 3.06
1744 2479 1.342174 GCCCCTCGGTAAATCGTCATA 59.658 52.381 0.00 0.00 0.00 2.15
1745 2480 2.865276 GCCCCTCGGTAAATCGTCATAC 60.865 54.545 0.00 0.00 0.00 2.39
1746 2481 2.288640 CCCCTCGGTAAATCGTCATACC 60.289 54.545 0.00 0.00 38.55 2.73
1751 2486 3.088194 GGTAAATCGTCATACCGAGCA 57.912 47.619 0.00 0.00 40.68 4.26
1752 2487 3.450578 GGTAAATCGTCATACCGAGCAA 58.549 45.455 0.00 0.00 40.68 3.91
1753 2488 3.866910 GGTAAATCGTCATACCGAGCAAA 59.133 43.478 0.00 0.00 40.68 3.68
1754 2489 4.330620 GGTAAATCGTCATACCGAGCAAAA 59.669 41.667 0.00 0.00 40.68 2.44
1755 2490 5.163834 GGTAAATCGTCATACCGAGCAAAAA 60.164 40.000 0.00 0.00 40.68 1.94
1806 2541 8.891671 TTTAAACACTCGATTTACAGTAAGGT 57.108 30.769 0.00 0.00 0.00 3.50
1807 2542 9.979578 TTTAAACACTCGATTTACAGTAAGGTA 57.020 29.630 0.00 0.00 0.00 3.08
1809 2544 8.475331 AAACACTCGATTTACAGTAAGGTATG 57.525 34.615 0.00 0.00 0.00 2.39
1810 2545 7.166691 ACACTCGATTTACAGTAAGGTATGT 57.833 36.000 0.00 0.00 0.00 2.29
1811 2546 8.284945 ACACTCGATTTACAGTAAGGTATGTA 57.715 34.615 0.00 0.00 0.00 2.29
1812 2547 8.404000 ACACTCGATTTACAGTAAGGTATGTAG 58.596 37.037 0.00 0.00 33.66 2.74
1813 2548 7.861372 CACTCGATTTACAGTAAGGTATGTAGG 59.139 40.741 0.00 0.00 33.66 3.18
1814 2549 7.014038 ACTCGATTTACAGTAAGGTATGTAGGG 59.986 40.741 0.00 0.00 33.66 3.53
1815 2550 6.835488 TCGATTTACAGTAAGGTATGTAGGGT 59.165 38.462 0.00 0.00 33.66 4.34
1816 2551 7.013655 TCGATTTACAGTAAGGTATGTAGGGTC 59.986 40.741 0.00 0.00 33.66 4.46
1817 2552 7.014038 CGATTTACAGTAAGGTATGTAGGGTCT 59.986 40.741 0.00 0.00 33.66 3.85
1818 2553 9.359653 GATTTACAGTAAGGTATGTAGGGTCTA 57.640 37.037 0.00 0.00 33.66 2.59
1819 2554 9.719433 ATTTACAGTAAGGTATGTAGGGTCTAA 57.281 33.333 0.00 0.00 33.66 2.10
1820 2555 9.719433 TTTACAGTAAGGTATGTAGGGTCTAAT 57.281 33.333 0.00 0.00 33.66 1.73
1821 2556 9.719433 TTACAGTAAGGTATGTAGGGTCTAATT 57.281 33.333 0.00 0.00 33.66 1.40
1823 2558 9.719433 ACAGTAAGGTATGTAGGGTCTAATTAA 57.281 33.333 0.00 0.00 0.00 1.40
1826 2561 9.433153 GTAAGGTATGTAGGGTCTAATTAATGC 57.567 37.037 0.00 0.00 0.00 3.56
1827 2562 7.626999 AGGTATGTAGGGTCTAATTAATGCA 57.373 36.000 0.00 0.00 0.00 3.96
1828 2563 8.041143 AGGTATGTAGGGTCTAATTAATGCAA 57.959 34.615 0.00 0.00 0.00 4.08
1829 2564 8.669571 AGGTATGTAGGGTCTAATTAATGCAAT 58.330 33.333 0.00 0.00 0.00 3.56
1830 2565 8.730680 GGTATGTAGGGTCTAATTAATGCAATG 58.269 37.037 0.00 0.00 0.00 2.82
1831 2566 9.502091 GTATGTAGGGTCTAATTAATGCAATGA 57.498 33.333 0.00 0.00 0.00 2.57
1832 2567 8.995027 ATGTAGGGTCTAATTAATGCAATGAA 57.005 30.769 0.00 0.00 0.00 2.57
1833 2568 8.815565 TGTAGGGTCTAATTAATGCAATGAAA 57.184 30.769 0.00 0.00 0.00 2.69
1834 2569 8.902806 TGTAGGGTCTAATTAATGCAATGAAAG 58.097 33.333 0.00 0.00 0.00 2.62
1835 2570 7.961326 AGGGTCTAATTAATGCAATGAAAGT 57.039 32.000 0.00 0.00 0.00 2.66
1836 2571 8.366359 AGGGTCTAATTAATGCAATGAAAGTT 57.634 30.769 0.00 0.00 0.00 2.66
1837 2572 8.253113 AGGGTCTAATTAATGCAATGAAAGTTG 58.747 33.333 0.00 0.00 0.00 3.16
1838 2573 7.492344 GGGTCTAATTAATGCAATGAAAGTTGG 59.508 37.037 0.00 0.00 0.00 3.77
1839 2574 8.250332 GGTCTAATTAATGCAATGAAAGTTGGA 58.750 33.333 0.00 0.00 33.89 3.53
1840 2575 9.807649 GTCTAATTAATGCAATGAAAGTTGGAT 57.192 29.630 0.00 0.00 41.15 3.41
1844 2579 9.550406 AATTAATGCAATGAAAGTTGGATATGG 57.450 29.630 0.00 0.00 38.91 2.74
1845 2580 4.389890 TGCAATGAAAGTTGGATATGGC 57.610 40.909 0.00 0.00 0.00 4.40
1846 2581 3.768215 TGCAATGAAAGTTGGATATGGCA 59.232 39.130 0.00 0.00 0.00 4.92
1847 2582 4.406326 TGCAATGAAAGTTGGATATGGCAT 59.594 37.500 4.88 4.88 0.00 4.40
1848 2583 4.748102 GCAATGAAAGTTGGATATGGCATG 59.252 41.667 10.98 0.00 0.00 4.06
1849 2584 5.682990 GCAATGAAAGTTGGATATGGCATGT 60.683 40.000 10.98 2.44 0.00 3.21
1850 2585 6.342906 CAATGAAAGTTGGATATGGCATGTT 58.657 36.000 10.98 0.00 0.00 2.71
1851 2586 5.327616 TGAAAGTTGGATATGGCATGTTG 57.672 39.130 10.98 0.00 0.00 3.33
1852 2587 4.160065 TGAAAGTTGGATATGGCATGTTGG 59.840 41.667 10.98 0.00 0.00 3.77
1853 2588 3.386932 AGTTGGATATGGCATGTTGGT 57.613 42.857 10.98 0.00 0.00 3.67
1854 2589 4.518278 AGTTGGATATGGCATGTTGGTA 57.482 40.909 10.98 0.00 0.00 3.25
1855 2590 4.464008 AGTTGGATATGGCATGTTGGTAG 58.536 43.478 10.98 0.00 0.00 3.18
1856 2591 2.862541 TGGATATGGCATGTTGGTAGC 58.137 47.619 10.98 0.00 0.00 3.58
1857 2592 2.174424 TGGATATGGCATGTTGGTAGCA 59.826 45.455 10.98 0.00 0.00 3.49
1858 2593 3.221771 GGATATGGCATGTTGGTAGCAA 58.778 45.455 10.98 2.54 0.00 3.91
1859 2594 3.004734 GGATATGGCATGTTGGTAGCAAC 59.995 47.826 26.90 26.90 35.75 4.17
1860 2595 1.185315 ATGGCATGTTGGTAGCAACC 58.815 50.000 29.46 17.64 46.98 3.77
1861 2596 0.112218 TGGCATGTTGGTAGCAACCT 59.888 50.000 29.46 20.04 46.91 3.50
1862 2597 1.352687 TGGCATGTTGGTAGCAACCTA 59.647 47.619 29.46 16.07 46.91 3.08
1863 2598 2.017049 GGCATGTTGGTAGCAACCTAG 58.983 52.381 29.46 20.86 46.91 3.02
1864 2599 2.618045 GGCATGTTGGTAGCAACCTAGT 60.618 50.000 29.46 13.78 46.91 2.57
1865 2600 3.081804 GCATGTTGGTAGCAACCTAGTT 58.918 45.455 29.46 10.75 46.91 2.24
1866 2601 3.127030 GCATGTTGGTAGCAACCTAGTTC 59.873 47.826 29.46 12.55 46.91 3.01
1867 2602 3.412237 TGTTGGTAGCAACCTAGTTCC 57.588 47.619 29.46 7.82 46.91 3.62
1868 2603 2.976882 TGTTGGTAGCAACCTAGTTCCT 59.023 45.455 29.46 0.00 46.91 3.36
1869 2604 3.244422 TGTTGGTAGCAACCTAGTTCCTG 60.244 47.826 29.46 0.00 46.91 3.86
1870 2605 2.616524 TGGTAGCAACCTAGTTCCTGT 58.383 47.619 0.00 0.00 46.91 4.00
1871 2606 2.976882 TGGTAGCAACCTAGTTCCTGTT 59.023 45.455 0.00 0.00 46.91 3.16
1872 2607 3.393278 TGGTAGCAACCTAGTTCCTGTTT 59.607 43.478 0.00 0.00 46.91 2.83
1873 2608 4.141344 TGGTAGCAACCTAGTTCCTGTTTT 60.141 41.667 0.00 0.00 46.91 2.43
1874 2609 4.215613 GGTAGCAACCTAGTTCCTGTTTTG 59.784 45.833 0.00 0.00 43.08 2.44
1875 2610 4.164843 AGCAACCTAGTTCCTGTTTTGA 57.835 40.909 0.00 0.00 0.00 2.69
1876 2611 4.137543 AGCAACCTAGTTCCTGTTTTGAG 58.862 43.478 0.00 0.00 0.00 3.02
1877 2612 4.134563 GCAACCTAGTTCCTGTTTTGAGA 58.865 43.478 0.00 0.00 0.00 3.27
1878 2613 4.214332 GCAACCTAGTTCCTGTTTTGAGAG 59.786 45.833 0.00 0.00 0.00 3.20
1879 2614 4.625607 ACCTAGTTCCTGTTTTGAGAGG 57.374 45.455 0.00 0.00 0.00 3.69
1880 2615 3.974642 ACCTAGTTCCTGTTTTGAGAGGT 59.025 43.478 0.00 0.00 0.00 3.85
1881 2616 4.040584 ACCTAGTTCCTGTTTTGAGAGGTC 59.959 45.833 0.00 0.00 28.54 3.85
1882 2617 4.284746 CCTAGTTCCTGTTTTGAGAGGTCT 59.715 45.833 0.00 0.00 0.00 3.85
1883 2618 4.344359 AGTTCCTGTTTTGAGAGGTCTC 57.656 45.455 0.00 0.00 43.15 3.36
1884 2619 3.970640 AGTTCCTGTTTTGAGAGGTCTCT 59.029 43.478 8.44 0.00 43.25 3.10
1885 2620 4.061596 GTTCCTGTTTTGAGAGGTCTCTG 58.938 47.826 5.09 0.00 43.25 3.35
1886 2621 2.634940 TCCTGTTTTGAGAGGTCTCTGG 59.365 50.000 5.09 0.00 43.25 3.86
1887 2622 2.370189 CCTGTTTTGAGAGGTCTCTGGT 59.630 50.000 5.09 0.00 43.25 4.00
1888 2623 3.181450 CCTGTTTTGAGAGGTCTCTGGTT 60.181 47.826 5.09 0.00 43.25 3.67
1889 2624 4.455606 CTGTTTTGAGAGGTCTCTGGTTT 58.544 43.478 5.09 0.00 43.25 3.27
1890 2625 4.199310 TGTTTTGAGAGGTCTCTGGTTTG 58.801 43.478 5.09 0.00 43.25 2.93
1891 2626 4.080582 TGTTTTGAGAGGTCTCTGGTTTGA 60.081 41.667 5.09 0.00 43.25 2.69
1892 2627 4.771114 TTTGAGAGGTCTCTGGTTTGAA 57.229 40.909 5.09 0.00 43.25 2.69
1893 2628 4.982241 TTGAGAGGTCTCTGGTTTGAAT 57.018 40.909 5.09 0.00 43.25 2.57
1894 2629 6.433847 TTTGAGAGGTCTCTGGTTTGAATA 57.566 37.500 5.09 0.00 43.25 1.75
1895 2630 6.627087 TTGAGAGGTCTCTGGTTTGAATAT 57.373 37.500 5.09 0.00 43.25 1.28
1896 2631 6.627087 TGAGAGGTCTCTGGTTTGAATATT 57.373 37.500 5.09 0.00 43.25 1.28
1897 2632 6.644347 TGAGAGGTCTCTGGTTTGAATATTC 58.356 40.000 8.60 8.60 43.25 1.75
1898 2633 5.665459 AGAGGTCTCTGGTTTGAATATTCG 58.335 41.667 10.80 0.00 38.75 3.34
1899 2634 5.187967 AGAGGTCTCTGGTTTGAATATTCGT 59.812 40.000 10.80 0.00 38.75 3.85
1900 2635 5.805728 AGGTCTCTGGTTTGAATATTCGTT 58.194 37.500 10.80 0.00 0.00 3.85
1901 2636 5.875359 AGGTCTCTGGTTTGAATATTCGTTC 59.125 40.000 10.80 3.54 0.00 3.95
1902 2637 5.642063 GGTCTCTGGTTTGAATATTCGTTCA 59.358 40.000 10.80 5.87 36.38 3.18
1903 2638 6.316390 GGTCTCTGGTTTGAATATTCGTTCAT 59.684 38.462 10.80 0.00 37.88 2.57
1904 2639 7.148239 GGTCTCTGGTTTGAATATTCGTTCATT 60.148 37.037 10.80 0.00 37.88 2.57
1905 2640 8.237267 GTCTCTGGTTTGAATATTCGTTCATTT 58.763 33.333 10.80 0.00 37.88 2.32
1906 2641 8.792633 TCTCTGGTTTGAATATTCGTTCATTTT 58.207 29.630 10.80 0.00 37.88 1.82
1907 2642 8.964420 TCTGGTTTGAATATTCGTTCATTTTC 57.036 30.769 10.80 0.00 37.88 2.29
1908 2643 8.792633 TCTGGTTTGAATATTCGTTCATTTTCT 58.207 29.630 10.80 0.00 37.88 2.52
1909 2644 9.410556 CTGGTTTGAATATTCGTTCATTTTCTT 57.589 29.630 10.80 0.00 37.88 2.52
1944 2679 9.272901 TCAAAATTCAACTATAAAATTCGCTCG 57.727 29.630 0.00 0.00 0.00 5.03
1945 2680 9.272901 CAAAATTCAACTATAAAATTCGCTCGA 57.727 29.630 0.00 0.00 0.00 4.04
1946 2681 9.834628 AAAATTCAACTATAAAATTCGCTCGAA 57.165 25.926 7.19 7.19 38.59 3.71
1947 2682 9.834628 AAATTCAACTATAAAATTCGCTCGAAA 57.165 25.926 8.84 0.00 37.69 3.46
1955 2690 9.663491 CTATAAAATTCGCTCGAAATATTCTCG 57.337 33.333 8.84 11.44 37.69 4.04
1956 2691 4.974103 AATTCGCTCGAAATATTCTCGG 57.026 40.909 8.84 9.94 37.69 4.63
1957 2692 3.431922 TTCGCTCGAAATATTCTCGGT 57.568 42.857 15.30 0.00 36.93 4.69
1958 2693 4.556942 TTCGCTCGAAATATTCTCGGTA 57.443 40.909 15.30 2.71 36.93 4.02
1959 2694 4.761235 TCGCTCGAAATATTCTCGGTAT 57.239 40.909 15.30 0.00 36.93 2.73
1960 2695 5.117355 TCGCTCGAAATATTCTCGGTATT 57.883 39.130 15.30 0.00 36.93 1.89
1961 2696 5.526115 TCGCTCGAAATATTCTCGGTATTT 58.474 37.500 15.30 0.00 36.93 1.40
1962 2697 5.401376 TCGCTCGAAATATTCTCGGTATTTG 59.599 40.000 15.30 5.51 36.93 2.32
1963 2698 5.175126 CGCTCGAAATATTCTCGGTATTTGT 59.825 40.000 15.30 0.00 36.93 2.83
1964 2699 6.582264 GCTCGAAATATTCTCGGTATTTGTC 58.418 40.000 15.30 0.00 36.93 3.18
1965 2700 6.613745 GCTCGAAATATTCTCGGTATTTGTCG 60.614 42.308 15.30 6.03 36.93 4.35
1966 2701 5.688621 TCGAAATATTCTCGGTATTTGTCGG 59.311 40.000 15.30 0.00 36.93 4.79
1967 2702 5.461078 CGAAATATTCTCGGTATTTGTCGGT 59.539 40.000 10.37 0.00 33.23 4.69
1968 2703 6.638063 CGAAATATTCTCGGTATTTGTCGGTA 59.362 38.462 10.37 0.00 33.23 4.02
1969 2704 7.327761 CGAAATATTCTCGGTATTTGTCGGTAT 59.672 37.037 10.37 0.00 33.23 2.73
1970 2705 8.897872 AAATATTCTCGGTATTTGTCGGTATT 57.102 30.769 0.00 0.00 32.19 1.89
1971 2706 8.897872 AATATTCTCGGTATTTGTCGGTATTT 57.102 30.769 0.00 0.00 0.00 1.40
1972 2707 6.839820 ATTCTCGGTATTTGTCGGTATTTC 57.160 37.500 0.00 0.00 0.00 2.17
1973 2708 5.587388 TCTCGGTATTTGTCGGTATTTCT 57.413 39.130 0.00 0.00 0.00 2.52
1974 2709 5.585390 TCTCGGTATTTGTCGGTATTTCTC 58.415 41.667 0.00 0.00 0.00 2.87
1975 2710 4.353737 TCGGTATTTGTCGGTATTTCTCG 58.646 43.478 0.00 0.00 0.00 4.04
1976 2711 3.488310 CGGTATTTGTCGGTATTTCTCGG 59.512 47.826 0.00 0.00 0.00 4.63
1977 2712 4.436332 GGTATTTGTCGGTATTTCTCGGT 58.564 43.478 0.00 0.00 0.00 4.69
1978 2713 5.591099 GGTATTTGTCGGTATTTCTCGGTA 58.409 41.667 0.00 0.00 0.00 4.02
1979 2714 6.042143 GGTATTTGTCGGTATTTCTCGGTAA 58.958 40.000 0.00 0.00 0.00 2.85
1980 2715 6.019559 GGTATTTGTCGGTATTTCTCGGTAAC 60.020 42.308 0.00 0.00 0.00 2.50
1981 2716 3.508744 TGTCGGTATTTCTCGGTAACC 57.491 47.619 0.00 0.00 0.00 2.85
2005 2740 4.850680 TGGTAACCACATTTATCAGTCCC 58.149 43.478 0.00 0.00 0.00 4.46
2006 2741 4.204799 GGTAACCACATTTATCAGTCCCC 58.795 47.826 0.00 0.00 0.00 4.81
2007 2742 3.382083 AACCACATTTATCAGTCCCCC 57.618 47.619 0.00 0.00 0.00 5.40
2008 2743 2.573463 ACCACATTTATCAGTCCCCCT 58.427 47.619 0.00 0.00 0.00 4.79
2009 2744 2.509964 ACCACATTTATCAGTCCCCCTC 59.490 50.000 0.00 0.00 0.00 4.30
2010 2745 2.485479 CCACATTTATCAGTCCCCCTCG 60.485 54.545 0.00 0.00 0.00 4.63
2011 2746 1.768870 ACATTTATCAGTCCCCCTCGG 59.231 52.381 0.00 0.00 0.00 4.63
2012 2747 1.768870 CATTTATCAGTCCCCCTCGGT 59.231 52.381 0.00 0.00 0.00 4.69
2013 2748 2.852714 TTTATCAGTCCCCCTCGGTA 57.147 50.000 0.00 0.00 0.00 4.02
2014 2749 2.852714 TTATCAGTCCCCCTCGGTAA 57.147 50.000 0.00 0.00 0.00 2.85
2015 2750 2.852714 TATCAGTCCCCCTCGGTAAA 57.147 50.000 0.00 0.00 0.00 2.01
2016 2751 1.961133 ATCAGTCCCCCTCGGTAAAA 58.039 50.000 0.00 0.00 0.00 1.52
2017 2752 1.961133 TCAGTCCCCCTCGGTAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2018 2753 2.271777 TCAGTCCCCCTCGGTAAAATT 58.728 47.619 0.00 0.00 0.00 1.82
2019 2754 3.452878 TCAGTCCCCCTCGGTAAAATTA 58.547 45.455 0.00 0.00 0.00 1.40
2020 2755 3.198417 TCAGTCCCCCTCGGTAAAATTAC 59.802 47.826 0.00 0.00 0.00 1.89
2039 2774 5.945466 TTACCTCATTCGGTAACCAAAAC 57.055 39.130 0.00 0.00 42.88 2.43
2040 2775 3.151554 ACCTCATTCGGTAACCAAAACC 58.848 45.455 0.00 0.00 34.94 3.27
2041 2776 3.181437 ACCTCATTCGGTAACCAAAACCT 60.181 43.478 0.00 0.00 34.94 3.50
2042 2777 3.824443 CCTCATTCGGTAACCAAAACCTT 59.176 43.478 0.00 0.00 34.66 3.50
2043 2778 4.320935 CCTCATTCGGTAACCAAAACCTTG 60.321 45.833 0.00 0.00 34.66 3.61
2408 3155 5.007682 AGAATGTGGGGTAATGTTGTACAC 58.992 41.667 0.00 0.00 0.00 2.90
2540 4755 2.895865 CTGCAGCTCGCCATCCTG 60.896 66.667 0.00 0.00 41.33 3.86
2733 4957 0.103026 CGCCGTCATTCTCATCCTGA 59.897 55.000 0.00 0.00 0.00 3.86
2932 5156 1.988467 GTTTTACCTGTACGCCGACTC 59.012 52.381 0.00 0.00 0.00 3.36
3151 5522 1.289066 CGTGGGGCGACGATGATAT 59.711 57.895 0.00 0.00 44.77 1.63
3166 5537 1.755393 GATATGGCGTCCTCCCCGTT 61.755 60.000 0.00 0.00 0.00 4.44
3590 6010 6.008696 TCTGGAAAGAAGGAAAAGGTGTTA 57.991 37.500 0.00 0.00 0.00 2.41
3727 6189 6.469782 TTCCTGATAATTCCCTTGATTTGC 57.530 37.500 0.00 0.00 0.00 3.68
3728 6190 4.895297 TCCTGATAATTCCCTTGATTTGCC 59.105 41.667 0.00 0.00 0.00 4.52
3800 6262 6.503589 TGTGCCTGTTTTATATTGTACACC 57.496 37.500 0.00 0.00 0.00 4.16
3806 6268 7.860872 GCCTGTTTTATATTGTACACCTTATGC 59.139 37.037 0.00 0.00 0.00 3.14
3823 6290 2.260844 TGCCTATGTGCTTCCTATGC 57.739 50.000 0.00 0.00 0.00 3.14
3830 6297 3.371102 TGTGCTTCCTATGCGATCTAC 57.629 47.619 0.00 0.00 0.00 2.59
3848 6315 9.502145 GCGATCTACAAATTATGTTTGATTTGA 57.498 29.630 13.79 5.33 42.85 2.69
3856 6323 9.763465 CAAATTATGTTTGATTTGATTTGGCTC 57.237 29.630 3.40 0.00 42.85 4.70
3870 6337 9.990360 TTTGATTTGGCTCGTATATGAACTATA 57.010 29.630 0.00 0.00 0.00 1.31
3926 6393 6.215121 TCAATTGTGTAGACTTTTTGCATGG 58.785 36.000 5.13 0.00 0.00 3.66
3927 6394 3.641437 TGTGTAGACTTTTTGCATGGC 57.359 42.857 0.00 0.00 0.00 4.40
3929 6396 3.004629 TGTGTAGACTTTTTGCATGGCAG 59.995 43.478 0.00 0.00 40.61 4.85
3932 6399 4.824537 TGTAGACTTTTTGCATGGCAGTAA 59.175 37.500 0.00 0.00 40.61 2.24
3933 6400 5.476599 TGTAGACTTTTTGCATGGCAGTAAT 59.523 36.000 0.00 0.00 40.61 1.89
3934 6401 6.657117 TGTAGACTTTTTGCATGGCAGTAATA 59.343 34.615 0.00 0.00 40.61 0.98
3935 6402 5.954335 AGACTTTTTGCATGGCAGTAATAC 58.046 37.500 0.00 0.00 40.61 1.89
3936 6403 4.732784 ACTTTTTGCATGGCAGTAATACG 58.267 39.130 0.00 0.00 40.61 3.06
3972 6439 9.935682 CGAAATTTGCATAGTAATACATGTCTT 57.064 29.630 0.00 0.66 0.00 3.01
4034 6501 4.981806 TGACCTGACAAAACTGAAAAGG 57.018 40.909 0.00 0.00 0.00 3.11
4035 6502 4.594970 TGACCTGACAAAACTGAAAAGGA 58.405 39.130 0.00 0.00 0.00 3.36
4049 6516 4.448210 TGAAAAGGAAGTTGAACGCTAGT 58.552 39.130 0.00 0.00 0.00 2.57
4060 6527 4.123276 TGAACGCTAGTTTTTACGCAAG 57.877 40.909 0.00 0.00 41.34 4.01
4086 6554 8.360390 GGGAACAACAGTCAGAAGAAAAATTAT 58.640 33.333 0.00 0.00 0.00 1.28
4139 6607 2.803817 AACGTCCGTCACCTGCCTT 61.804 57.895 0.00 0.00 0.00 4.35
4245 6717 1.302511 GCTTTGCGGACCTCCAAGA 60.303 57.895 0.00 0.00 35.14 3.02
4257 6736 2.158475 ACCTCCAAGATGGCTCACAAAA 60.158 45.455 0.00 0.00 37.47 2.44
4280 6759 2.534349 CGAGGTCATTATCGTTGAACGG 59.466 50.000 18.32 1.02 42.81 4.44
4286 6765 3.802139 TCATTATCGTTGAACGGATCAGC 59.198 43.478 18.32 0.00 42.81 4.26
4287 6766 3.520290 TTATCGTTGAACGGATCAGCT 57.480 42.857 18.32 0.00 42.81 4.24
4323 6803 1.816835 ACACGCCATCGAACTCTAGAA 59.183 47.619 0.00 0.00 39.41 2.10
4389 6869 0.392336 GCCAGCCACAAACCATGAAA 59.608 50.000 0.00 0.00 0.00 2.69
4390 6870 1.002315 GCCAGCCACAAACCATGAAAT 59.998 47.619 0.00 0.00 0.00 2.17
4393 6873 3.244146 CCAGCCACAAACCATGAAATCAA 60.244 43.478 0.00 0.00 0.00 2.57
4398 6878 5.299148 CCACAAACCATGAAATCAACACAT 58.701 37.500 0.00 0.00 0.00 3.21
4424 6904 1.153107 CATCTTCCAGATGCCGCCA 60.153 57.895 0.84 0.00 44.69 5.69
4439 6919 1.952990 CCGCCAATGCATACCACAATA 59.047 47.619 0.00 0.00 37.32 1.90
4459 6939 1.279496 TGCAACTGCTCCTGGACTAT 58.721 50.000 2.95 0.00 42.66 2.12
4469 6949 0.761802 CCTGGACTATCTCCCAAGCC 59.238 60.000 0.00 0.00 38.49 4.35
4498 6978 1.954146 GCTGGAGCAAACGTCGTCA 60.954 57.895 0.00 0.00 41.59 4.35
4540 7023 1.064906 CAAGTCCACCATGAGGATGCT 60.065 52.381 9.64 0.00 37.52 3.79
4546 7029 1.826921 CCATGAGGATGCTGCCACC 60.827 63.158 0.00 0.17 36.89 4.61
4547 7030 1.077285 CATGAGGATGCTGCCACCA 60.077 57.895 13.11 0.00 0.00 4.17
4548 7031 0.467474 CATGAGGATGCTGCCACCAT 60.467 55.000 13.11 0.00 0.00 3.55
4589 7072 6.953520 TGAATAGACTGGTTTCCAAATCCATT 59.046 34.615 0.00 0.00 30.80 3.16
4621 7105 1.878522 CAATCGCCTCGTCGGGAAG 60.879 63.158 0.00 0.00 0.00 3.46
4632 7116 1.605712 CGTCGGGAAGGGATATGAAGC 60.606 57.143 0.00 0.00 0.00 3.86
4647 7131 4.889832 ATGAAGCTTCTTTATTCAGCGG 57.110 40.909 26.09 0.00 38.66 5.52
4650 7134 1.006832 GCTTCTTTATTCAGCGGCGA 58.993 50.000 12.98 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.380733 GAATCCGACGGCCCAAAATC 59.619 55.000 9.66 0.00 0.00 2.17
6 7 0.034477 AGAATCCGACGGCCCAAAAT 60.034 50.000 9.66 0.00 0.00 1.82
7 8 0.675522 GAGAATCCGACGGCCCAAAA 60.676 55.000 9.66 0.00 0.00 2.44
8 9 1.078708 GAGAATCCGACGGCCCAAA 60.079 57.895 9.66 0.00 0.00 3.28
9 10 2.238847 CTGAGAATCCGACGGCCCAA 62.239 60.000 9.66 0.00 0.00 4.12
10 11 2.682136 TGAGAATCCGACGGCCCA 60.682 61.111 9.66 0.00 0.00 5.36
11 12 1.749334 ATCTGAGAATCCGACGGCCC 61.749 60.000 9.66 0.13 28.86 5.80
12 13 0.319125 GATCTGAGAATCCGACGGCC 60.319 60.000 9.66 0.00 28.86 6.13
13 14 0.385751 TGATCTGAGAATCCGACGGC 59.614 55.000 9.66 0.00 28.86 5.68
14 15 1.950216 TCTGATCTGAGAATCCGACGG 59.050 52.381 7.84 7.84 28.86 4.79
15 16 2.993545 GTCTGATCTGAGAATCCGACG 58.006 52.381 2.02 0.00 32.59 5.12
16 17 2.287308 CCGTCTGATCTGAGAATCCGAC 60.287 54.545 2.02 0.00 36.86 4.79
17 18 1.950216 CCGTCTGATCTGAGAATCCGA 59.050 52.381 2.02 0.00 31.35 4.55
18 19 1.601663 GCCGTCTGATCTGAGAATCCG 60.602 57.143 2.02 2.92 0.00 4.18
19 20 1.686052 AGCCGTCTGATCTGAGAATCC 59.314 52.381 2.02 0.00 0.00 3.01
20 21 2.622942 AGAGCCGTCTGATCTGAGAATC 59.377 50.000 2.02 0.20 0.00 2.52
21 22 2.622942 GAGAGCCGTCTGATCTGAGAAT 59.377 50.000 2.02 0.00 30.97 2.40
22 23 2.020720 GAGAGCCGTCTGATCTGAGAA 58.979 52.381 2.02 0.00 30.97 2.87
23 24 1.065126 TGAGAGCCGTCTGATCTGAGA 60.065 52.381 2.02 0.00 30.97 3.27
24 25 1.387539 TGAGAGCCGTCTGATCTGAG 58.612 55.000 2.02 0.00 30.97 3.35
25 26 1.474478 GTTGAGAGCCGTCTGATCTGA 59.526 52.381 0.00 0.00 30.97 3.27
26 27 1.203287 TGTTGAGAGCCGTCTGATCTG 59.797 52.381 0.00 0.00 30.97 2.90
27 28 1.550327 TGTTGAGAGCCGTCTGATCT 58.450 50.000 0.00 0.00 30.97 2.75
28 29 1.996191 GTTGTTGAGAGCCGTCTGATC 59.004 52.381 0.00 0.00 30.97 2.92
29 30 1.620819 AGTTGTTGAGAGCCGTCTGAT 59.379 47.619 0.00 0.00 30.97 2.90
30 31 1.000163 GAGTTGTTGAGAGCCGTCTGA 60.000 52.381 0.00 0.00 30.97 3.27
31 32 1.000283 AGAGTTGTTGAGAGCCGTCTG 60.000 52.381 0.00 0.00 30.97 3.51
32 33 1.000283 CAGAGTTGTTGAGAGCCGTCT 60.000 52.381 0.00 0.00 34.86 4.18
33 34 1.423395 CAGAGTTGTTGAGAGCCGTC 58.577 55.000 0.00 0.00 0.00 4.79
34 35 0.601311 GCAGAGTTGTTGAGAGCCGT 60.601 55.000 0.00 0.00 0.00 5.68
35 36 0.601046 TGCAGAGTTGTTGAGAGCCG 60.601 55.000 0.00 0.00 0.00 5.52
36 37 1.265365 GTTGCAGAGTTGTTGAGAGCC 59.735 52.381 0.00 0.00 0.00 4.70
37 38 1.070309 CGTTGCAGAGTTGTTGAGAGC 60.070 52.381 0.00 0.00 0.00 4.09
38 39 2.205074 ACGTTGCAGAGTTGTTGAGAG 58.795 47.619 0.00 0.00 0.00 3.20
39 40 2.309528 ACGTTGCAGAGTTGTTGAGA 57.690 45.000 0.00 0.00 0.00 3.27
40 41 3.100817 CAAACGTTGCAGAGTTGTTGAG 58.899 45.455 0.00 0.00 0.00 3.02
41 42 3.129852 CAAACGTTGCAGAGTTGTTGA 57.870 42.857 0.00 0.00 0.00 3.18
64 65 3.876309 TGGACTCCTTGTAGGCTTTTT 57.124 42.857 0.00 0.00 34.61 1.94
65 66 3.876309 TTGGACTCCTTGTAGGCTTTT 57.124 42.857 0.00 0.00 34.61 2.27
66 67 3.876309 TTTGGACTCCTTGTAGGCTTT 57.124 42.857 0.00 0.00 34.61 3.51
67 68 3.876309 TTTTGGACTCCTTGTAGGCTT 57.124 42.857 0.00 0.00 34.61 4.35
68 69 3.876309 TTTTTGGACTCCTTGTAGGCT 57.124 42.857 0.00 0.00 34.61 4.58
69 70 4.079253 TGATTTTTGGACTCCTTGTAGGC 58.921 43.478 0.00 0.00 34.61 3.93
70 71 4.154195 CGTGATTTTTGGACTCCTTGTAGG 59.846 45.833 0.00 0.00 36.46 3.18
71 72 4.378459 GCGTGATTTTTGGACTCCTTGTAG 60.378 45.833 0.00 0.00 0.00 2.74
72 73 3.500680 GCGTGATTTTTGGACTCCTTGTA 59.499 43.478 0.00 0.00 0.00 2.41
73 74 2.293399 GCGTGATTTTTGGACTCCTTGT 59.707 45.455 0.00 0.00 0.00 3.16
74 75 2.293122 TGCGTGATTTTTGGACTCCTTG 59.707 45.455 0.00 0.00 0.00 3.61
75 76 2.293399 GTGCGTGATTTTTGGACTCCTT 59.707 45.455 0.00 0.00 0.00 3.36
76 77 1.880027 GTGCGTGATTTTTGGACTCCT 59.120 47.619 0.00 0.00 0.00 3.69
77 78 1.606668 TGTGCGTGATTTTTGGACTCC 59.393 47.619 0.00 0.00 0.00 3.85
78 79 3.243068 ACTTGTGCGTGATTTTTGGACTC 60.243 43.478 0.00 0.00 0.00 3.36
79 80 2.687935 ACTTGTGCGTGATTTTTGGACT 59.312 40.909 0.00 0.00 0.00 3.85
80 81 3.042887 GACTTGTGCGTGATTTTTGGAC 58.957 45.455 0.00 0.00 0.00 4.02
81 82 2.034053 GGACTTGTGCGTGATTTTTGGA 59.966 45.455 0.00 0.00 0.00 3.53
82 83 2.223688 TGGACTTGTGCGTGATTTTTGG 60.224 45.455 0.00 0.00 0.00 3.28
83 84 3.077229 TGGACTTGTGCGTGATTTTTG 57.923 42.857 0.00 0.00 0.00 2.44
84 85 5.643379 ATATGGACTTGTGCGTGATTTTT 57.357 34.783 0.00 0.00 0.00 1.94
85 86 5.296780 CCTATATGGACTTGTGCGTGATTTT 59.703 40.000 0.00 0.00 38.35 1.82
86 87 4.816385 CCTATATGGACTTGTGCGTGATTT 59.184 41.667 0.00 0.00 38.35 2.17
87 88 4.380531 CCTATATGGACTTGTGCGTGATT 58.619 43.478 0.00 0.00 38.35 2.57
88 89 3.244215 CCCTATATGGACTTGTGCGTGAT 60.244 47.826 0.00 0.00 38.35 3.06
89 90 2.102420 CCCTATATGGACTTGTGCGTGA 59.898 50.000 0.00 0.00 38.35 4.35
90 91 2.102420 TCCCTATATGGACTTGTGCGTG 59.898 50.000 0.00 0.00 38.35 5.34
91 92 2.365617 CTCCCTATATGGACTTGTGCGT 59.634 50.000 0.00 0.00 38.35 5.24
92 93 2.628178 TCTCCCTATATGGACTTGTGCG 59.372 50.000 0.00 0.00 38.35 5.34
93 94 3.643792 ACTCTCCCTATATGGACTTGTGC 59.356 47.826 0.00 0.00 38.35 4.57
94 95 6.951198 AGATACTCTCCCTATATGGACTTGTG 59.049 42.308 0.00 0.00 38.35 3.33
95 96 7.109901 AGATACTCTCCCTATATGGACTTGT 57.890 40.000 0.00 0.00 38.35 3.16
96 97 8.333235 AGTAGATACTCTCCCTATATGGACTTG 58.667 40.741 0.00 0.00 38.35 3.16
97 98 8.471302 AGTAGATACTCTCCCTATATGGACTT 57.529 38.462 0.00 0.00 38.35 3.01
98 99 8.995577 GTAGTAGATACTCTCCCTATATGGACT 58.004 40.741 0.00 0.00 37.73 3.85
99 100 8.212995 GGTAGTAGATACTCTCCCTATATGGAC 58.787 44.444 0.00 0.00 37.73 4.02
100 101 7.910558 TGGTAGTAGATACTCTCCCTATATGGA 59.089 40.741 0.00 0.00 37.73 3.41
101 102 8.103660 TGGTAGTAGATACTCTCCCTATATGG 57.896 42.308 0.00 0.00 37.73 2.74
102 103 9.621629 CTTGGTAGTAGATACTCTCCCTATATG 57.378 40.741 0.00 0.00 37.73 1.78
103 104 9.577337 TCTTGGTAGTAGATACTCTCCCTATAT 57.423 37.037 0.00 0.00 37.73 0.86
104 105 8.824783 GTCTTGGTAGTAGATACTCTCCCTATA 58.175 40.741 0.00 0.00 37.73 1.31
105 106 7.518303 AGTCTTGGTAGTAGATACTCTCCCTAT 59.482 40.741 0.00 0.00 37.73 2.57
106 107 6.850765 AGTCTTGGTAGTAGATACTCTCCCTA 59.149 42.308 0.00 0.00 37.73 3.53
107 108 5.673113 AGTCTTGGTAGTAGATACTCTCCCT 59.327 44.000 0.00 0.00 37.73 4.20
108 109 5.944135 AGTCTTGGTAGTAGATACTCTCCC 58.056 45.833 0.00 0.00 37.73 4.30
109 110 8.431222 TCTAAGTCTTGGTAGTAGATACTCTCC 58.569 40.741 0.00 2.16 37.73 3.71
111 112 9.787435 CATCTAAGTCTTGGTAGTAGATACTCT 57.213 37.037 0.00 0.00 37.73 3.24
112 113 8.508875 GCATCTAAGTCTTGGTAGTAGATACTC 58.491 40.741 0.00 0.00 37.73 2.59
113 114 8.221944 AGCATCTAAGTCTTGGTAGTAGATACT 58.778 37.037 0.00 0.00 40.24 2.12
114 115 8.398878 AGCATCTAAGTCTTGGTAGTAGATAC 57.601 38.462 0.00 0.00 31.78 2.24
115 116 9.504708 GTAGCATCTAAGTCTTGGTAGTAGATA 57.495 37.037 0.00 0.00 31.78 1.98
116 117 7.449086 GGTAGCATCTAAGTCTTGGTAGTAGAT 59.551 40.741 0.00 0.00 32.91 1.98
117 118 6.771749 GGTAGCATCTAAGTCTTGGTAGTAGA 59.228 42.308 0.00 0.00 0.00 2.59
118 119 6.293516 CGGTAGCATCTAAGTCTTGGTAGTAG 60.294 46.154 0.00 0.00 0.00 2.57
119 120 5.530171 CGGTAGCATCTAAGTCTTGGTAGTA 59.470 44.000 0.00 0.00 0.00 1.82
120 121 4.338682 CGGTAGCATCTAAGTCTTGGTAGT 59.661 45.833 0.00 0.00 0.00 2.73
121 122 4.338682 ACGGTAGCATCTAAGTCTTGGTAG 59.661 45.833 0.00 0.00 0.00 3.18
122 123 4.097437 CACGGTAGCATCTAAGTCTTGGTA 59.903 45.833 0.00 0.00 0.00 3.25
123 124 3.097614 ACGGTAGCATCTAAGTCTTGGT 58.902 45.455 0.00 0.00 0.00 3.67
124 125 3.130516 TCACGGTAGCATCTAAGTCTTGG 59.869 47.826 0.00 0.00 0.00 3.61
125 126 4.371855 TCACGGTAGCATCTAAGTCTTG 57.628 45.455 0.00 0.00 0.00 3.02
126 127 5.277876 CGTATCACGGTAGCATCTAAGTCTT 60.278 44.000 0.00 0.00 38.08 3.01
127 128 4.213694 CGTATCACGGTAGCATCTAAGTCT 59.786 45.833 0.00 0.00 38.08 3.24
128 129 4.465016 CGTATCACGGTAGCATCTAAGTC 58.535 47.826 0.00 0.00 38.08 3.01
129 130 4.485024 CGTATCACGGTAGCATCTAAGT 57.515 45.455 0.00 0.00 38.08 2.24
344 357 1.271488 TGGCTGTGCACAATCTGATCA 60.271 47.619 21.98 8.32 0.00 2.92
782 848 2.279985 CGAGCAGCATGGCGATCT 60.280 61.111 0.00 0.00 39.27 2.75
783 849 2.279717 TCGAGCAGCATGGCGATC 60.280 61.111 0.00 0.00 39.27 3.69
1160 1396 0.169009 GACGAAGGAGTTGGCATTGC 59.831 55.000 0.00 0.00 0.00 3.56
1355 1591 1.404181 GCACAATGTAGAGGAGCACGA 60.404 52.381 0.00 0.00 0.00 4.35
1413 1679 3.244078 TGTCTGAGCTTGATTACGTGGTT 60.244 43.478 0.00 0.00 0.00 3.67
1475 1837 8.127327 CCAAATGACATGAATTAGCTCAACTAG 58.873 37.037 0.00 0.00 30.79 2.57
1497 1928 6.264518 GTCCTCCTTTCACTTTACAATCCAAA 59.735 38.462 0.00 0.00 0.00 3.28
1667 2402 3.564053 TTCGACTGGTAACCAAAACCT 57.436 42.857 0.00 0.00 37.91 3.50
1668 2403 4.841443 ATTTCGACTGGTAACCAAAACC 57.159 40.909 0.00 0.00 37.53 3.27
1669 2404 6.267070 TGAAATTTCGACTGGTAACCAAAAC 58.733 36.000 13.34 0.00 30.80 2.43
1670 2405 6.452494 TGAAATTTCGACTGGTAACCAAAA 57.548 33.333 13.34 0.00 30.80 2.44
1671 2406 6.319152 TCTTGAAATTTCGACTGGTAACCAAA 59.681 34.615 13.34 0.00 30.80 3.28
1672 2407 5.823570 TCTTGAAATTTCGACTGGTAACCAA 59.176 36.000 13.34 0.00 30.80 3.67
1673 2408 5.369833 TCTTGAAATTTCGACTGGTAACCA 58.630 37.500 13.34 0.00 0.00 3.67
1674 2409 5.934935 TCTTGAAATTTCGACTGGTAACC 57.065 39.130 13.34 0.00 0.00 2.85
1675 2410 8.290325 AGAAATCTTGAAATTTCGACTGGTAAC 58.710 33.333 13.34 1.22 45.92 2.50
1676 2411 8.391075 AGAAATCTTGAAATTTCGACTGGTAA 57.609 30.769 13.34 0.00 45.92 2.85
1677 2412 7.659799 TGAGAAATCTTGAAATTTCGACTGGTA 59.340 33.333 13.34 0.00 45.92 3.25
1678 2413 6.486657 TGAGAAATCTTGAAATTTCGACTGGT 59.513 34.615 13.34 0.00 45.92 4.00
1679 2414 6.902341 TGAGAAATCTTGAAATTTCGACTGG 58.098 36.000 13.34 0.77 45.92 4.00
1680 2415 7.484007 CCATGAGAAATCTTGAAATTTCGACTG 59.516 37.037 13.34 1.46 45.92 3.51
1681 2416 7.175641 ACCATGAGAAATCTTGAAATTTCGACT 59.824 33.333 13.34 4.67 45.92 4.18
1682 2417 7.308435 ACCATGAGAAATCTTGAAATTTCGAC 58.692 34.615 13.34 0.00 45.92 4.20
1683 2418 7.452880 ACCATGAGAAATCTTGAAATTTCGA 57.547 32.000 13.34 10.62 45.92 3.71
1684 2419 9.065871 GTAACCATGAGAAATCTTGAAATTTCG 57.934 33.333 13.34 0.46 45.92 3.46
1685 2420 9.358872 GGTAACCATGAGAAATCTTGAAATTTC 57.641 33.333 11.41 11.41 43.12 2.17
1686 2421 8.869109 TGGTAACCATGAGAAATCTTGAAATTT 58.131 29.630 0.00 0.00 0.00 1.82
1687 2422 8.306761 GTGGTAACCATGAGAAATCTTGAAATT 58.693 33.333 0.00 0.00 35.28 1.82
1688 2423 7.362056 CGTGGTAACCATGAGAAATCTTGAAAT 60.362 37.037 0.00 0.00 42.73 2.17
1689 2424 6.072728 CGTGGTAACCATGAGAAATCTTGAAA 60.073 38.462 0.00 0.00 42.73 2.69
1690 2425 5.411361 CGTGGTAACCATGAGAAATCTTGAA 59.589 40.000 0.00 0.00 42.73 2.69
1691 2426 4.935205 CGTGGTAACCATGAGAAATCTTGA 59.065 41.667 0.00 0.00 42.73 3.02
1692 2427 4.695455 ACGTGGTAACCATGAGAAATCTTG 59.305 41.667 0.00 0.00 42.73 3.02
1693 2428 4.906618 ACGTGGTAACCATGAGAAATCTT 58.093 39.130 0.00 0.00 42.73 2.40
1694 2429 4.553330 ACGTGGTAACCATGAGAAATCT 57.447 40.909 0.00 0.00 42.73 2.40
1695 2430 6.920569 AATACGTGGTAACCATGAGAAATC 57.079 37.500 0.00 0.00 42.73 2.17
1696 2431 6.317893 GGAAATACGTGGTAACCATGAGAAAT 59.682 38.462 0.00 0.00 42.73 2.17
1697 2432 5.644636 GGAAATACGTGGTAACCATGAGAAA 59.355 40.000 0.00 0.00 42.73 2.52
1698 2433 5.180271 GGAAATACGTGGTAACCATGAGAA 58.820 41.667 0.00 0.00 42.73 2.87
1699 2434 4.678574 CGGAAATACGTGGTAACCATGAGA 60.679 45.833 0.00 0.00 42.73 3.27
1700 2435 3.554324 CGGAAATACGTGGTAACCATGAG 59.446 47.826 0.00 0.00 42.73 2.90
1701 2436 3.055963 ACGGAAATACGTGGTAACCATGA 60.056 43.478 0.00 0.00 46.64 3.07
1702 2437 3.264104 ACGGAAATACGTGGTAACCATG 58.736 45.455 0.00 0.00 46.64 3.66
1703 2438 3.615224 ACGGAAATACGTGGTAACCAT 57.385 42.857 0.00 0.00 46.64 3.55
1713 2448 1.881252 CGAGGGGCACGGAAATACG 60.881 63.158 0.00 0.00 40.31 3.06
1714 2449 4.120085 CGAGGGGCACGGAAATAC 57.880 61.111 0.00 0.00 0.00 1.89
1721 2456 1.881252 CGATTTACCGAGGGGCACG 60.881 63.158 0.00 0.00 36.48 5.34
1722 2457 0.808847 GACGATTTACCGAGGGGCAC 60.809 60.000 0.00 0.00 36.48 5.01
1723 2458 1.259142 TGACGATTTACCGAGGGGCA 61.259 55.000 0.00 0.00 36.48 5.36
1724 2459 0.106149 ATGACGATTTACCGAGGGGC 59.894 55.000 0.00 0.00 36.48 5.80
1725 2460 2.288640 GGTATGACGATTTACCGAGGGG 60.289 54.545 0.00 0.00 40.11 4.79
1726 2461 3.022607 GGTATGACGATTTACCGAGGG 57.977 52.381 0.00 0.00 0.00 4.30
1731 2466 3.088194 TGCTCGGTATGACGATTTACC 57.912 47.619 0.00 0.00 42.62 2.85
1732 2467 5.459110 TTTTGCTCGGTATGACGATTTAC 57.541 39.130 0.00 0.00 42.62 2.01
1780 2515 9.498176 ACCTTACTGTAAATCGAGTGTTTAAAT 57.502 29.630 1.46 0.00 0.00 1.40
1781 2516 8.891671 ACCTTACTGTAAATCGAGTGTTTAAA 57.108 30.769 1.46 0.00 0.00 1.52
1783 2518 9.577110 CATACCTTACTGTAAATCGAGTGTTTA 57.423 33.333 1.46 0.00 0.00 2.01
1784 2519 8.092687 ACATACCTTACTGTAAATCGAGTGTTT 58.907 33.333 1.46 0.00 0.00 2.83
1785 2520 7.609056 ACATACCTTACTGTAAATCGAGTGTT 58.391 34.615 1.46 0.00 0.00 3.32
1786 2521 7.166691 ACATACCTTACTGTAAATCGAGTGT 57.833 36.000 1.46 0.73 0.00 3.55
1787 2522 7.861372 CCTACATACCTTACTGTAAATCGAGTG 59.139 40.741 1.46 0.20 0.00 3.51
1788 2523 7.014038 CCCTACATACCTTACTGTAAATCGAGT 59.986 40.741 1.46 0.00 0.00 4.18
1789 2524 7.014038 ACCCTACATACCTTACTGTAAATCGAG 59.986 40.741 1.46 0.00 0.00 4.04
1790 2525 6.835488 ACCCTACATACCTTACTGTAAATCGA 59.165 38.462 1.46 0.00 0.00 3.59
1791 2526 7.014038 AGACCCTACATACCTTACTGTAAATCG 59.986 40.741 1.46 0.00 0.00 3.34
1792 2527 8.247666 AGACCCTACATACCTTACTGTAAATC 57.752 38.462 1.46 0.00 0.00 2.17
1793 2528 9.719433 TTAGACCCTACATACCTTACTGTAAAT 57.281 33.333 1.46 0.00 0.00 1.40
1794 2529 9.719433 ATTAGACCCTACATACCTTACTGTAAA 57.281 33.333 1.46 0.00 0.00 2.01
1795 2530 9.719433 AATTAGACCCTACATACCTTACTGTAA 57.281 33.333 0.00 0.00 0.00 2.41
1797 2532 9.719433 TTAATTAGACCCTACATACCTTACTGT 57.281 33.333 0.00 0.00 0.00 3.55
1800 2535 9.433153 GCATTAATTAGACCCTACATACCTTAC 57.567 37.037 0.00 0.00 0.00 2.34
1801 2536 9.161572 TGCATTAATTAGACCCTACATACCTTA 57.838 33.333 0.00 0.00 0.00 2.69
1802 2537 8.041143 TGCATTAATTAGACCCTACATACCTT 57.959 34.615 0.00 0.00 0.00 3.50
1803 2538 7.626999 TGCATTAATTAGACCCTACATACCT 57.373 36.000 0.00 0.00 0.00 3.08
1804 2539 8.730680 CATTGCATTAATTAGACCCTACATACC 58.269 37.037 0.00 0.00 0.00 2.73
1805 2540 9.502091 TCATTGCATTAATTAGACCCTACATAC 57.498 33.333 0.00 0.00 0.00 2.39
1807 2542 8.995027 TTCATTGCATTAATTAGACCCTACAT 57.005 30.769 0.00 0.00 0.00 2.29
1808 2543 8.815565 TTTCATTGCATTAATTAGACCCTACA 57.184 30.769 0.00 0.00 0.00 2.74
1809 2544 8.903820 ACTTTCATTGCATTAATTAGACCCTAC 58.096 33.333 0.00 0.00 0.00 3.18
1810 2545 9.474313 AACTTTCATTGCATTAATTAGACCCTA 57.526 29.630 0.00 0.00 0.00 3.53
1811 2546 7.961326 ACTTTCATTGCATTAATTAGACCCT 57.039 32.000 0.00 0.00 0.00 4.34
1812 2547 7.492344 CCAACTTTCATTGCATTAATTAGACCC 59.508 37.037 0.00 0.00 0.00 4.46
1813 2548 8.250332 TCCAACTTTCATTGCATTAATTAGACC 58.750 33.333 0.00 0.00 0.00 3.85
1814 2549 9.807649 ATCCAACTTTCATTGCATTAATTAGAC 57.192 29.630 0.00 0.00 0.00 2.59
1818 2553 9.550406 CCATATCCAACTTTCATTGCATTAATT 57.450 29.630 0.00 0.00 0.00 1.40
1819 2554 7.658575 GCCATATCCAACTTTCATTGCATTAAT 59.341 33.333 0.00 0.00 0.00 1.40
1820 2555 6.985645 GCCATATCCAACTTTCATTGCATTAA 59.014 34.615 0.00 0.00 0.00 1.40
1821 2556 6.097981 TGCCATATCCAACTTTCATTGCATTA 59.902 34.615 0.00 0.00 0.00 1.90
1822 2557 5.104859 TGCCATATCCAACTTTCATTGCATT 60.105 36.000 0.00 0.00 0.00 3.56
1823 2558 4.406326 TGCCATATCCAACTTTCATTGCAT 59.594 37.500 0.00 0.00 0.00 3.96
1824 2559 3.768215 TGCCATATCCAACTTTCATTGCA 59.232 39.130 0.00 0.00 0.00 4.08
1825 2560 4.389890 TGCCATATCCAACTTTCATTGC 57.610 40.909 0.00 0.00 0.00 3.56
1826 2561 5.909477 ACATGCCATATCCAACTTTCATTG 58.091 37.500 0.00 0.00 0.00 2.82
1827 2562 6.342906 CAACATGCCATATCCAACTTTCATT 58.657 36.000 0.00 0.00 0.00 2.57
1828 2563 5.163385 CCAACATGCCATATCCAACTTTCAT 60.163 40.000 0.00 0.00 0.00 2.57
1829 2564 4.160065 CCAACATGCCATATCCAACTTTCA 59.840 41.667 0.00 0.00 0.00 2.69
1830 2565 4.160252 ACCAACATGCCATATCCAACTTTC 59.840 41.667 0.00 0.00 0.00 2.62
1831 2566 4.095946 ACCAACATGCCATATCCAACTTT 58.904 39.130 0.00 0.00 0.00 2.66
1832 2567 3.711863 ACCAACATGCCATATCCAACTT 58.288 40.909 0.00 0.00 0.00 2.66
1833 2568 3.386932 ACCAACATGCCATATCCAACT 57.613 42.857 0.00 0.00 0.00 3.16
1834 2569 3.004734 GCTACCAACATGCCATATCCAAC 59.995 47.826 0.00 0.00 0.00 3.77
1835 2570 3.221771 GCTACCAACATGCCATATCCAA 58.778 45.455 0.00 0.00 0.00 3.53
1836 2571 2.174424 TGCTACCAACATGCCATATCCA 59.826 45.455 0.00 0.00 0.00 3.41
1837 2572 2.862541 TGCTACCAACATGCCATATCC 58.137 47.619 0.00 0.00 0.00 2.59
1845 2580 4.565652 AGGAACTAGGTTGCTACCAACATG 60.566 45.833 19.71 6.77 45.66 3.21
1846 2581 3.587506 AGGAACTAGGTTGCTACCAACAT 59.412 43.478 19.71 2.91 45.66 2.71
1847 2582 2.976882 AGGAACTAGGTTGCTACCAACA 59.023 45.455 19.71 3.35 45.66 3.33
1848 2583 3.244457 ACAGGAACTAGGTTGCTACCAAC 60.244 47.826 19.71 5.58 42.02 3.77
1849 2584 2.976882 ACAGGAACTAGGTTGCTACCAA 59.023 45.455 19.71 0.00 42.02 3.67
1850 2585 2.616524 ACAGGAACTAGGTTGCTACCA 58.383 47.619 19.71 4.87 42.02 3.25
1851 2586 3.697619 AACAGGAACTAGGTTGCTACC 57.302 47.619 9.54 9.54 42.02 3.18
1852 2587 5.061179 TCAAAACAGGAACTAGGTTGCTAC 58.939 41.667 4.28 0.00 42.02 3.58
1853 2588 5.071250 TCTCAAAACAGGAACTAGGTTGCTA 59.929 40.000 4.28 0.00 42.02 3.49
1854 2589 4.137543 CTCAAAACAGGAACTAGGTTGCT 58.862 43.478 0.00 0.00 44.62 3.91
1855 2590 4.134563 TCTCAAAACAGGAACTAGGTTGC 58.865 43.478 0.00 0.00 36.02 4.17
1856 2591 4.757149 CCTCTCAAAACAGGAACTAGGTTG 59.243 45.833 0.00 0.00 36.02 3.77
1857 2592 4.412528 ACCTCTCAAAACAGGAACTAGGTT 59.587 41.667 0.00 0.00 36.02 3.50
1858 2593 3.974642 ACCTCTCAAAACAGGAACTAGGT 59.025 43.478 0.00 0.00 36.02 3.08
1859 2594 4.284746 AGACCTCTCAAAACAGGAACTAGG 59.715 45.833 0.00 0.00 36.02 3.02
1860 2595 5.245075 AGAGACCTCTCAAAACAGGAACTAG 59.755 44.000 5.13 0.00 45.21 2.57
1861 2596 5.011125 CAGAGACCTCTCAAAACAGGAACTA 59.989 44.000 5.13 0.00 45.21 2.24
1862 2597 3.970640 AGAGACCTCTCAAAACAGGAACT 59.029 43.478 5.13 0.00 45.21 3.01
1863 2598 4.061596 CAGAGACCTCTCAAAACAGGAAC 58.938 47.826 5.13 0.00 45.21 3.62
1864 2599 3.071602 CCAGAGACCTCTCAAAACAGGAA 59.928 47.826 5.13 0.00 45.21 3.36
1865 2600 2.634940 CCAGAGACCTCTCAAAACAGGA 59.365 50.000 5.13 0.00 45.21 3.86
1866 2601 2.370189 ACCAGAGACCTCTCAAAACAGG 59.630 50.000 5.13 0.00 45.21 4.00
1867 2602 3.760580 ACCAGAGACCTCTCAAAACAG 57.239 47.619 5.13 0.00 45.21 3.16
1868 2603 4.080582 TCAAACCAGAGACCTCTCAAAACA 60.081 41.667 5.13 0.00 45.21 2.83
1869 2604 4.451900 TCAAACCAGAGACCTCTCAAAAC 58.548 43.478 5.13 0.00 45.21 2.43
1870 2605 4.771114 TCAAACCAGAGACCTCTCAAAA 57.229 40.909 5.13 0.00 45.21 2.44
1871 2606 4.771114 TTCAAACCAGAGACCTCTCAAA 57.229 40.909 5.13 0.00 45.21 2.69
1872 2607 4.982241 ATTCAAACCAGAGACCTCTCAA 57.018 40.909 5.13 0.00 45.21 3.02
1873 2608 6.627087 AATATTCAAACCAGAGACCTCTCA 57.373 37.500 5.13 0.00 45.21 3.27
1874 2609 5.751028 CGAATATTCAAACCAGAGACCTCTC 59.249 44.000 15.57 0.00 43.17 3.20
1875 2610 5.187967 ACGAATATTCAAACCAGAGACCTCT 59.812 40.000 15.57 0.00 41.37 3.69
1876 2611 5.420409 ACGAATATTCAAACCAGAGACCTC 58.580 41.667 15.57 0.00 0.00 3.85
1877 2612 5.422214 ACGAATATTCAAACCAGAGACCT 57.578 39.130 15.57 0.00 0.00 3.85
1878 2613 5.642063 TGAACGAATATTCAAACCAGAGACC 59.358 40.000 15.57 0.00 35.65 3.85
1879 2614 6.721571 TGAACGAATATTCAAACCAGAGAC 57.278 37.500 15.57 0.00 35.65 3.36
1880 2615 7.921786 AATGAACGAATATTCAAACCAGAGA 57.078 32.000 15.57 0.00 41.78 3.10
1881 2616 8.970691 AAAATGAACGAATATTCAAACCAGAG 57.029 30.769 15.57 0.00 41.78 3.35
1882 2617 8.792633 AGAAAATGAACGAATATTCAAACCAGA 58.207 29.630 15.57 0.00 41.78 3.86
1883 2618 8.970691 AGAAAATGAACGAATATTCAAACCAG 57.029 30.769 15.57 0.72 41.78 4.00
1918 2653 9.272901 CGAGCGAATTTTATAGTTGAATTTTGA 57.727 29.630 0.00 0.00 0.00 2.69
1919 2654 9.272901 TCGAGCGAATTTTATAGTTGAATTTTG 57.727 29.630 0.00 0.00 0.00 2.44
1920 2655 9.834628 TTCGAGCGAATTTTATAGTTGAATTTT 57.165 25.926 0.55 0.00 0.00 1.82
1921 2656 9.834628 TTTCGAGCGAATTTTATAGTTGAATTT 57.165 25.926 6.12 0.00 33.79 1.82
1929 2664 9.663491 CGAGAATATTTCGAGCGAATTTTATAG 57.337 33.333 6.12 0.00 40.36 1.31
1930 2665 8.644619 CCGAGAATATTTCGAGCGAATTTTATA 58.355 33.333 16.51 2.20 40.36 0.98
1931 2666 7.170998 ACCGAGAATATTTCGAGCGAATTTTAT 59.829 33.333 16.51 0.00 40.36 1.40
1932 2667 6.477688 ACCGAGAATATTTCGAGCGAATTTTA 59.522 34.615 16.51 0.49 40.36 1.52
1933 2668 5.293569 ACCGAGAATATTTCGAGCGAATTTT 59.706 36.000 16.51 1.26 40.36 1.82
1934 2669 4.809426 ACCGAGAATATTTCGAGCGAATTT 59.191 37.500 16.51 1.59 40.36 1.82
1935 2670 4.369182 ACCGAGAATATTTCGAGCGAATT 58.631 39.130 16.51 5.78 40.36 2.17
1936 2671 3.978687 ACCGAGAATATTTCGAGCGAAT 58.021 40.909 16.51 0.37 40.36 3.34
1937 2672 3.431922 ACCGAGAATATTTCGAGCGAA 57.568 42.857 16.51 0.55 40.36 4.70
1938 2673 4.761235 ATACCGAGAATATTTCGAGCGA 57.239 40.909 16.51 0.00 40.36 4.93
1939 2674 5.175126 ACAAATACCGAGAATATTTCGAGCG 59.825 40.000 16.51 5.82 40.36 5.03
1940 2675 6.526566 ACAAATACCGAGAATATTTCGAGC 57.473 37.500 16.51 0.00 40.36 5.03
1941 2676 6.129168 CCGACAAATACCGAGAATATTTCGAG 60.129 42.308 16.51 11.24 40.36 4.04
1942 2677 5.688621 CCGACAAATACCGAGAATATTTCGA 59.311 40.000 16.51 0.00 40.36 3.71
1943 2678 5.461078 ACCGACAAATACCGAGAATATTTCG 59.539 40.000 10.96 10.96 37.78 3.46
1944 2679 6.839820 ACCGACAAATACCGAGAATATTTC 57.160 37.500 0.00 0.00 31.33 2.17
1945 2680 8.897872 AATACCGACAAATACCGAGAATATTT 57.102 30.769 0.00 0.00 33.45 1.40
1946 2681 8.897872 AAATACCGACAAATACCGAGAATATT 57.102 30.769 0.00 0.00 0.00 1.28
1947 2682 8.365647 AGAAATACCGACAAATACCGAGAATAT 58.634 33.333 0.00 0.00 0.00 1.28
1948 2683 7.719483 AGAAATACCGACAAATACCGAGAATA 58.281 34.615 0.00 0.00 0.00 1.75
1949 2684 6.579865 AGAAATACCGACAAATACCGAGAAT 58.420 36.000 0.00 0.00 0.00 2.40
1950 2685 5.969423 AGAAATACCGACAAATACCGAGAA 58.031 37.500 0.00 0.00 0.00 2.87
1951 2686 5.585390 GAGAAATACCGACAAATACCGAGA 58.415 41.667 0.00 0.00 0.00 4.04
1952 2687 4.440103 CGAGAAATACCGACAAATACCGAG 59.560 45.833 0.00 0.00 0.00 4.63
1953 2688 4.353737 CGAGAAATACCGACAAATACCGA 58.646 43.478 0.00 0.00 0.00 4.69
1954 2689 3.488310 CCGAGAAATACCGACAAATACCG 59.512 47.826 0.00 0.00 0.00 4.02
1955 2690 4.436332 ACCGAGAAATACCGACAAATACC 58.564 43.478 0.00 0.00 0.00 2.73
1956 2691 6.019559 GGTTACCGAGAAATACCGACAAATAC 60.020 42.308 0.00 0.00 0.00 1.89
1957 2692 6.042143 GGTTACCGAGAAATACCGACAAATA 58.958 40.000 0.00 0.00 0.00 1.40
1958 2693 4.872124 GGTTACCGAGAAATACCGACAAAT 59.128 41.667 0.00 0.00 0.00 2.32
1959 2694 4.244862 GGTTACCGAGAAATACCGACAAA 58.755 43.478 0.00 0.00 0.00 2.83
1960 2695 3.848726 GGTTACCGAGAAATACCGACAA 58.151 45.455 0.00 0.00 0.00 3.18
1961 2696 3.508744 GGTTACCGAGAAATACCGACA 57.491 47.619 0.00 0.00 0.00 4.35
1983 2718 4.324719 GGGGACTGATAAATGTGGTTACCA 60.325 45.833 0.00 0.00 0.00 3.25
1984 2719 4.204799 GGGGACTGATAAATGTGGTTACC 58.795 47.826 0.00 0.00 0.00 2.85
1985 2720 4.079958 AGGGGGACTGATAAATGTGGTTAC 60.080 45.833 0.00 0.00 0.00 2.50
1986 2721 4.116113 AGGGGGACTGATAAATGTGGTTA 58.884 43.478 0.00 0.00 0.00 2.85
1987 2722 2.926329 AGGGGGACTGATAAATGTGGTT 59.074 45.455 0.00 0.00 0.00 3.67
1988 2723 2.509964 GAGGGGGACTGATAAATGTGGT 59.490 50.000 0.00 0.00 0.00 4.16
1989 2724 2.485479 CGAGGGGGACTGATAAATGTGG 60.485 54.545 0.00 0.00 0.00 4.17
1990 2725 2.485479 CCGAGGGGGACTGATAAATGTG 60.485 54.545 0.00 0.00 38.47 3.21
1991 2726 1.768870 CCGAGGGGGACTGATAAATGT 59.231 52.381 0.00 0.00 38.47 2.71
1992 2727 1.768870 ACCGAGGGGGACTGATAAATG 59.231 52.381 0.00 0.00 39.97 2.32
1993 2728 2.191981 ACCGAGGGGGACTGATAAAT 57.808 50.000 0.00 0.00 39.97 1.40
1994 2729 2.852714 TACCGAGGGGGACTGATAAA 57.147 50.000 0.00 0.00 39.97 1.40
1995 2730 2.852714 TTACCGAGGGGGACTGATAA 57.147 50.000 0.00 0.00 39.97 1.75
1996 2731 2.852714 TTTACCGAGGGGGACTGATA 57.147 50.000 0.00 0.00 39.97 2.15
1997 2732 1.961133 TTTTACCGAGGGGGACTGAT 58.039 50.000 0.00 0.00 39.97 2.90
1998 2733 1.961133 ATTTTACCGAGGGGGACTGA 58.039 50.000 0.00 0.00 39.97 3.41
1999 2734 2.801077 AATTTTACCGAGGGGGACTG 57.199 50.000 0.00 0.00 39.97 3.51
2000 2735 2.507058 GGTAATTTTACCGAGGGGGACT 59.493 50.000 3.84 0.00 43.30 3.85
2001 2736 2.923121 GGTAATTTTACCGAGGGGGAC 58.077 52.381 3.84 0.00 43.30 4.46
2018 2753 4.041938 AGGTTTTGGTTACCGAATGAGGTA 59.958 41.667 4.72 0.00 43.89 3.08
2019 2754 8.827078 TCAAGGTTTTGGTTACCGAATGAGGT 62.827 42.308 4.72 0.00 40.69 3.85
2020 2755 3.418047 AGGTTTTGGTTACCGAATGAGG 58.582 45.455 4.72 0.00 40.69 3.86
2021 2756 4.517453 TCAAGGTTTTGGTTACCGAATGAG 59.483 41.667 4.72 0.00 40.69 2.90
2022 2757 4.462133 TCAAGGTTTTGGTTACCGAATGA 58.538 39.130 4.72 3.29 40.69 2.57
2023 2758 4.839668 TCAAGGTTTTGGTTACCGAATG 57.160 40.909 4.72 0.85 40.69 2.67
2024 2759 4.461431 GGATCAAGGTTTTGGTTACCGAAT 59.539 41.667 4.72 0.00 40.69 3.34
2025 2760 3.822167 GGATCAAGGTTTTGGTTACCGAA 59.178 43.478 0.00 0.00 40.69 4.30
2026 2761 3.414269 GGATCAAGGTTTTGGTTACCGA 58.586 45.455 0.00 0.00 40.69 4.69
2027 2762 2.160813 CGGATCAAGGTTTTGGTTACCG 59.839 50.000 0.00 0.00 40.69 4.02
2028 2763 2.490509 CCGGATCAAGGTTTTGGTTACC 59.509 50.000 0.00 0.00 34.97 2.85
2029 2764 3.414269 TCCGGATCAAGGTTTTGGTTAC 58.586 45.455 0.00 0.00 34.97 2.50
2030 2765 3.791953 TCCGGATCAAGGTTTTGGTTA 57.208 42.857 0.00 0.00 34.97 2.85
2031 2766 2.668144 TCCGGATCAAGGTTTTGGTT 57.332 45.000 0.00 0.00 34.97 3.67
2032 2767 2.041081 TGATCCGGATCAAGGTTTTGGT 59.959 45.455 38.74 4.69 44.14 3.67
2033 2768 2.722094 TGATCCGGATCAAGGTTTTGG 58.278 47.619 38.74 0.00 44.14 3.28
2379 3126 2.570415 TTACCCCACATTCTTCGCAA 57.430 45.000 0.00 0.00 0.00 4.85
2408 3155 2.792290 CGACAGATGGAGCAACGCG 61.792 63.158 3.53 3.53 0.00 6.01
2707 4931 1.945354 GAGAATGACGGCGAGGGACA 61.945 60.000 16.62 5.93 0.00 4.02
2733 4957 6.942976 TCTTCTTGTATAGTTTCGGGTTCAT 58.057 36.000 0.00 0.00 0.00 2.57
2932 5156 1.073763 TCCTCTGTGACAAATGTGGGG 59.926 52.381 0.00 0.00 0.00 4.96
3013 5330 4.117661 AGTCGCCTTCGTCCTCGC 62.118 66.667 0.00 0.00 36.96 5.03
3170 5541 3.774702 GGTGAAAGCGACGGCGAC 61.775 66.667 18.90 5.74 46.35 5.19
3705 6167 4.895297 GGCAAATCAAGGGAATTATCAGGA 59.105 41.667 0.00 0.00 0.00 3.86
3706 6168 4.897670 AGGCAAATCAAGGGAATTATCAGG 59.102 41.667 0.00 0.00 0.00 3.86
3707 6169 6.475596 AAGGCAAATCAAGGGAATTATCAG 57.524 37.500 0.00 0.00 0.00 2.90
3708 6170 6.872585 AAAGGCAAATCAAGGGAATTATCA 57.127 33.333 0.00 0.00 0.00 2.15
3709 6171 7.280876 GGAAAAAGGCAAATCAAGGGAATTATC 59.719 37.037 0.00 0.00 0.00 1.75
3710 6172 7.037370 AGGAAAAAGGCAAATCAAGGGAATTAT 60.037 33.333 0.00 0.00 0.00 1.28
3711 6173 6.272090 AGGAAAAAGGCAAATCAAGGGAATTA 59.728 34.615 0.00 0.00 0.00 1.40
3712 6174 5.073554 AGGAAAAAGGCAAATCAAGGGAATT 59.926 36.000 0.00 0.00 0.00 2.17
3713 6175 4.598807 AGGAAAAAGGCAAATCAAGGGAAT 59.401 37.500 0.00 0.00 0.00 3.01
3716 6178 3.324556 TCAGGAAAAAGGCAAATCAAGGG 59.675 43.478 0.00 0.00 0.00 3.95
3717 6179 4.605640 TCAGGAAAAAGGCAAATCAAGG 57.394 40.909 0.00 0.00 0.00 3.61
3718 6180 8.782339 AATTATCAGGAAAAAGGCAAATCAAG 57.218 30.769 0.00 0.00 0.00 3.02
3721 6183 6.763135 GGGAATTATCAGGAAAAAGGCAAATC 59.237 38.462 0.00 0.00 0.00 2.17
3722 6184 6.444816 AGGGAATTATCAGGAAAAAGGCAAAT 59.555 34.615 0.00 0.00 0.00 2.32
3724 6186 5.341169 AGGGAATTATCAGGAAAAAGGCAA 58.659 37.500 0.00 0.00 0.00 4.52
3725 6187 4.946646 AGGGAATTATCAGGAAAAAGGCA 58.053 39.130 0.00 0.00 0.00 4.75
3726 6188 5.422012 TCAAGGGAATTATCAGGAAAAAGGC 59.578 40.000 0.00 0.00 0.00 4.35
3727 6189 7.666063 ATCAAGGGAATTATCAGGAAAAAGG 57.334 36.000 0.00 0.00 0.00 3.11
3728 6190 9.374838 CAAATCAAGGGAATTATCAGGAAAAAG 57.625 33.333 0.00 0.00 0.00 2.27
3789 6251 6.655003 GCACATAGGCATAAGGTGTACAATAT 59.345 38.462 12.97 0.00 0.00 1.28
3790 6252 5.995282 GCACATAGGCATAAGGTGTACAATA 59.005 40.000 12.97 0.00 0.00 1.90
3800 6262 4.394300 GCATAGGAAGCACATAGGCATAAG 59.606 45.833 7.19 0.00 41.21 1.73
3806 6268 2.820059 TCGCATAGGAAGCACATAGG 57.180 50.000 0.00 0.00 0.00 2.57
3809 6271 3.321968 TGTAGATCGCATAGGAAGCACAT 59.678 43.478 0.00 0.00 0.00 3.21
3830 6297 9.763465 GAGCCAAATCAAATCAAACATAATTTG 57.237 29.630 0.00 0.00 41.88 2.32
3910 6377 3.923017 ACTGCCATGCAAAAAGTCTAC 57.077 42.857 0.00 0.00 38.41 2.59
3989 6456 8.892723 TCAATGAGTATTTTGCTTGTACTATGG 58.107 33.333 0.00 0.00 0.00 2.74
4034 6501 4.606004 GCGTAAAAACTAGCGTTCAACTTC 59.394 41.667 0.00 0.00 31.66 3.01
4035 6502 4.034279 TGCGTAAAAACTAGCGTTCAACTT 59.966 37.500 0.00 0.00 31.66 2.66
4049 6516 3.444388 ACTGTTGTTCCCTTGCGTAAAAA 59.556 39.130 0.00 0.00 0.00 1.94
4060 6527 5.576447 TTTTTCTTCTGACTGTTGTTCCC 57.424 39.130 0.00 0.00 0.00 3.97
4086 6554 9.174166 GCTCAAGGGATTTTACAGTTCTAATTA 57.826 33.333 0.00 0.00 0.00 1.40
4139 6607 3.056458 CTACTGTGGTGGTGCCGA 58.944 61.111 0.00 0.00 41.21 5.54
4173 6643 3.494048 GGGTGATGAGGTGATCTGTCATC 60.494 52.174 18.28 18.28 44.62 2.92
4257 6736 3.187700 GTTCAACGATAATGACCTCGCT 58.812 45.455 0.00 0.00 38.42 4.93
4280 6759 1.375908 TGTGTTGCCCGAGCTGATC 60.376 57.895 0.00 0.00 40.80 2.92
4323 6803 0.836400 AGTCATTCGGGGGTGTCAGT 60.836 55.000 0.00 0.00 0.00 3.41
4351 6831 2.728007 GCAGGTATGGCTTCCTTCTTT 58.272 47.619 0.00 0.00 30.91 2.52
4389 6869 5.824624 GGAAGATGGTGTATCATGTGTTGAT 59.175 40.000 0.00 0.00 46.86 2.57
4390 6870 5.185454 GGAAGATGGTGTATCATGTGTTGA 58.815 41.667 0.00 0.00 38.31 3.18
4393 6873 4.471025 TCTGGAAGATGGTGTATCATGTGT 59.529 41.667 0.00 0.00 38.67 3.72
4439 6919 1.279496 TAGTCCAGGAGCAGTTGCAT 58.721 50.000 6.90 0.00 45.16 3.96
4444 6924 2.080654 GGAGATAGTCCAGGAGCAGT 57.919 55.000 0.00 0.00 46.10 4.40
4476 6956 2.591715 ACGTTTGCTCCAGCGCTT 60.592 55.556 7.50 0.00 45.83 4.68
4518 6998 2.092968 GCATCCTCATGGTGGACTTGTA 60.093 50.000 9.90 0.00 36.30 2.41
4540 7023 2.438254 GATGGCGTGATGGTGGCA 60.438 61.111 0.00 0.00 45.22 4.92
4546 7029 2.905075 TCAAGTAAGGATGGCGTGATG 58.095 47.619 0.00 0.00 0.00 3.07
4547 7030 3.627395 TTCAAGTAAGGATGGCGTGAT 57.373 42.857 0.00 0.00 0.00 3.06
4548 7031 3.627395 ATTCAAGTAAGGATGGCGTGA 57.373 42.857 0.00 0.00 0.00 4.35
4589 7072 1.134220 GCGATTGGTCTATGGTTGGGA 60.134 52.381 0.00 0.00 0.00 4.37
4621 7105 6.348050 CGCTGAATAAAGAAGCTTCATATCCC 60.348 42.308 27.57 18.03 34.72 3.85
4632 7116 1.999735 TGTCGCCGCTGAATAAAGAAG 59.000 47.619 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.