Multiple sequence alignment - TraesCS7B01G027400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G027400 | chr7B | 100.000 | 2219 | 0 | 0 | 1 | 2219 | 26215901 | 26213683 | 0.000000e+00 | 4098 |
1 | TraesCS7B01G027400 | chr7B | 92.105 | 1064 | 40 | 6 | 692 | 1746 | 26236693 | 26235665 | 0.000000e+00 | 1459 |
2 | TraesCS7B01G027400 | chr7B | 89.505 | 505 | 44 | 4 | 198 | 693 | 26237444 | 26236940 | 4.020000e-177 | 630 |
3 | TraesCS7B01G027400 | chr7B | 95.025 | 201 | 9 | 1 | 1 | 201 | 549674819 | 549674620 | 4.600000e-82 | 315 |
4 | TraesCS7B01G027400 | chr7D | 90.008 | 1181 | 75 | 12 | 578 | 1746 | 78882973 | 78881824 | 0.000000e+00 | 1487 |
5 | TraesCS7B01G027400 | chr7D | 90.372 | 914 | 59 | 7 | 1000 | 1906 | 78865525 | 78864634 | 0.000000e+00 | 1173 |
6 | TraesCS7B01G027400 | chr7D | 90.145 | 619 | 46 | 7 | 1000 | 1616 | 78844340 | 78843735 | 0.000000e+00 | 791 |
7 | TraesCS7B01G027400 | chr7A | 90.406 | 886 | 43 | 15 | 1000 | 1864 | 81949345 | 81948481 | 0.000000e+00 | 1127 |
8 | TraesCS7B01G027400 | chr7A | 83.918 | 342 | 30 | 9 | 1878 | 2204 | 81945069 | 81944738 | 9.960000e-79 | 303 |
9 | TraesCS7B01G027400 | chr6D | 96.429 | 196 | 7 | 0 | 1 | 196 | 178698282 | 178698477 | 7.640000e-85 | 324 |
10 | TraesCS7B01G027400 | chr4D | 96.000 | 200 | 7 | 1 | 1 | 200 | 55439929 | 55439731 | 7.640000e-85 | 324 |
11 | TraesCS7B01G027400 | chr2A | 96.392 | 194 | 7 | 0 | 1 | 194 | 462609867 | 462609674 | 9.890000e-84 | 320 |
12 | TraesCS7B01G027400 | chr5D | 95.500 | 200 | 8 | 1 | 1 | 200 | 400645632 | 400645434 | 3.560000e-83 | 318 |
13 | TraesCS7B01G027400 | chr2D | 94.660 | 206 | 9 | 2 | 1 | 206 | 132153946 | 132153743 | 3.560000e-83 | 318 |
14 | TraesCS7B01G027400 | chr2D | 95.500 | 200 | 8 | 1 | 1 | 200 | 433771944 | 433772142 | 3.560000e-83 | 318 |
15 | TraesCS7B01G027400 | chr3D | 94.203 | 207 | 10 | 2 | 1 | 207 | 256974226 | 256974022 | 4.600000e-82 | 315 |
16 | TraesCS7B01G027400 | chr3B | 95.025 | 201 | 8 | 2 | 1 | 200 | 307244082 | 307244281 | 4.600000e-82 | 315 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G027400 | chr7B | 26213683 | 26215901 | 2218 | True | 4098.0 | 4098 | 100.000 | 1 | 2219 | 1 | chr7B.!!$R1 | 2218 |
1 | TraesCS7B01G027400 | chr7B | 26235665 | 26237444 | 1779 | True | 1044.5 | 1459 | 90.805 | 198 | 1746 | 2 | chr7B.!!$R3 | 1548 |
2 | TraesCS7B01G027400 | chr7D | 78881824 | 78882973 | 1149 | True | 1487.0 | 1487 | 90.008 | 578 | 1746 | 1 | chr7D.!!$R3 | 1168 |
3 | TraesCS7B01G027400 | chr7D | 78864634 | 78865525 | 891 | True | 1173.0 | 1173 | 90.372 | 1000 | 1906 | 1 | chr7D.!!$R2 | 906 |
4 | TraesCS7B01G027400 | chr7D | 78843735 | 78844340 | 605 | True | 791.0 | 791 | 90.145 | 1000 | 1616 | 1 | chr7D.!!$R1 | 616 |
5 | TraesCS7B01G027400 | chr7A | 81944738 | 81949345 | 4607 | True | 715.0 | 1127 | 87.162 | 1000 | 2204 | 2 | chr7A.!!$R1 | 1204 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
748 | 1006 | 0.034059 | CCTGCTTGTCGAGACACCTT | 59.966 | 55.0 | 5.3 | 0.0 | 41.67 | 3.5 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1691 | 2008 | 0.109723 | ACAGGTTGGCGTATGGTTGT | 59.89 | 50.0 | 0.0 | 0.0 | 0.0 | 3.32 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 8.773033 | AATAAAGATTGACCAATATCCAAGCT | 57.227 | 30.769 | 0.00 | 0.00 | 38.05 | 3.74 |
30 | 31 | 6.461110 | AAAGATTGACCAATATCCAAGCTG | 57.539 | 37.500 | 0.00 | 0.00 | 36.75 | 4.24 |
31 | 32 | 5.378230 | AGATTGACCAATATCCAAGCTGA | 57.622 | 39.130 | 0.00 | 0.00 | 35.53 | 4.26 |
32 | 33 | 5.759059 | AGATTGACCAATATCCAAGCTGAA | 58.241 | 37.500 | 0.00 | 0.00 | 35.53 | 3.02 |
33 | 34 | 6.189859 | AGATTGACCAATATCCAAGCTGAAA | 58.810 | 36.000 | 0.00 | 0.00 | 35.53 | 2.69 |
34 | 35 | 6.664816 | AGATTGACCAATATCCAAGCTGAAAA | 59.335 | 34.615 | 0.00 | 0.00 | 35.53 | 2.29 |
35 | 36 | 6.855763 | TTGACCAATATCCAAGCTGAAAAT | 57.144 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
36 | 37 | 7.953005 | TTGACCAATATCCAAGCTGAAAATA | 57.047 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
37 | 38 | 8.537728 | TTGACCAATATCCAAGCTGAAAATAT | 57.462 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
38 | 39 | 9.639563 | TTGACCAATATCCAAGCTGAAAATATA | 57.360 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
39 | 40 | 9.812347 | TGACCAATATCCAAGCTGAAAATATAT | 57.188 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
48 | 49 | 8.840321 | TCCAAGCTGAAAATATATAAGTGAAGC | 58.160 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
49 | 50 | 8.623903 | CCAAGCTGAAAATATATAAGTGAAGCA | 58.376 | 33.333 | 10.75 | 0.00 | 0.00 | 3.91 |
50 | 51 | 9.443283 | CAAGCTGAAAATATATAAGTGAAGCAC | 57.557 | 33.333 | 10.75 | 0.00 | 34.10 | 4.40 |
51 | 52 | 8.737168 | AGCTGAAAATATATAAGTGAAGCACA | 57.263 | 30.769 | 10.75 | 0.00 | 36.74 | 4.57 |
61 | 62 | 1.955762 | GTGAAGCACACGAAGCATTC | 58.044 | 50.000 | 0.00 | 0.00 | 39.78 | 2.67 |
62 | 63 | 1.532868 | GTGAAGCACACGAAGCATTCT | 59.467 | 47.619 | 0.00 | 0.00 | 39.89 | 2.40 |
63 | 64 | 2.736721 | GTGAAGCACACGAAGCATTCTA | 59.263 | 45.455 | 0.00 | 0.00 | 39.89 | 2.10 |
64 | 65 | 3.372206 | GTGAAGCACACGAAGCATTCTAT | 59.628 | 43.478 | 0.00 | 0.00 | 39.89 | 1.98 |
65 | 66 | 4.566759 | GTGAAGCACACGAAGCATTCTATA | 59.433 | 41.667 | 0.00 | 0.00 | 39.89 | 1.31 |
66 | 67 | 5.063438 | GTGAAGCACACGAAGCATTCTATAA | 59.937 | 40.000 | 0.00 | 0.00 | 39.89 | 0.98 |
67 | 68 | 5.641636 | TGAAGCACACGAAGCATTCTATAAA | 59.358 | 36.000 | 0.00 | 0.00 | 44.75 | 1.40 |
68 | 69 | 5.725110 | AGCACACGAAGCATTCTATAAAG | 57.275 | 39.130 | 0.00 | 0.00 | 44.75 | 1.85 |
69 | 70 | 4.034510 | AGCACACGAAGCATTCTATAAAGC | 59.965 | 41.667 | 0.00 | 0.00 | 44.75 | 3.51 |
70 | 71 | 4.786609 | GCACACGAAGCATTCTATAAAGCC | 60.787 | 45.833 | 0.00 | 0.00 | 44.75 | 4.35 |
71 | 72 | 4.332543 | CACACGAAGCATTCTATAAAGCCA | 59.667 | 41.667 | 0.00 | 0.00 | 44.75 | 4.75 |
72 | 73 | 5.008019 | CACACGAAGCATTCTATAAAGCCAT | 59.992 | 40.000 | 0.00 | 0.00 | 44.75 | 4.40 |
73 | 74 | 6.202762 | CACACGAAGCATTCTATAAAGCCATA | 59.797 | 38.462 | 0.00 | 0.00 | 44.75 | 2.74 |
74 | 75 | 6.202954 | ACACGAAGCATTCTATAAAGCCATAC | 59.797 | 38.462 | 0.00 | 0.00 | 44.75 | 2.39 |
75 | 76 | 6.425114 | CACGAAGCATTCTATAAAGCCATACT | 59.575 | 38.462 | 0.00 | 0.00 | 44.75 | 2.12 |
76 | 77 | 6.647067 | ACGAAGCATTCTATAAAGCCATACTC | 59.353 | 38.462 | 0.00 | 0.00 | 44.75 | 2.59 |
77 | 78 | 6.646653 | CGAAGCATTCTATAAAGCCATACTCA | 59.353 | 38.462 | 0.00 | 0.00 | 44.75 | 3.41 |
78 | 79 | 7.171508 | CGAAGCATTCTATAAAGCCATACTCAA | 59.828 | 37.037 | 0.00 | 0.00 | 44.75 | 3.02 |
79 | 80 | 8.752005 | AAGCATTCTATAAAGCCATACTCAAA | 57.248 | 30.769 | 0.00 | 0.00 | 29.49 | 2.69 |
80 | 81 | 8.752005 | AGCATTCTATAAAGCCATACTCAAAA | 57.248 | 30.769 | 0.00 | 0.00 | 29.49 | 2.44 |
81 | 82 | 8.844244 | AGCATTCTATAAAGCCATACTCAAAAG | 58.156 | 33.333 | 0.00 | 0.00 | 29.49 | 2.27 |
82 | 83 | 8.840321 | GCATTCTATAAAGCCATACTCAAAAGA | 58.160 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
91 | 92 | 8.635765 | AAGCCATACTCAAAAGATTTAAGTGA | 57.364 | 30.769 | 4.41 | 0.00 | 0.00 | 3.41 |
92 | 93 | 8.635765 | AGCCATACTCAAAAGATTTAAGTGAA | 57.364 | 30.769 | 4.41 | 0.00 | 0.00 | 3.18 |
93 | 94 | 8.734386 | AGCCATACTCAAAAGATTTAAGTGAAG | 58.266 | 33.333 | 4.41 | 0.00 | 0.00 | 3.02 |
94 | 95 | 7.486232 | GCCATACTCAAAAGATTTAAGTGAAGC | 59.514 | 37.037 | 4.41 | 0.00 | 0.00 | 3.86 |
95 | 96 | 8.514594 | CCATACTCAAAAGATTTAAGTGAAGCA | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
96 | 97 | 9.334693 | CATACTCAAAAGATTTAAGTGAAGCAC | 57.665 | 33.333 | 0.00 | 0.00 | 34.10 | 4.40 |
97 | 98 | 7.333528 | ACTCAAAAGATTTAAGTGAAGCACA | 57.666 | 32.000 | 0.00 | 0.00 | 36.74 | 4.57 |
98 | 99 | 7.771183 | ACTCAAAAGATTTAAGTGAAGCACAA | 58.229 | 30.769 | 0.00 | 0.00 | 36.74 | 3.33 |
99 | 100 | 8.250332 | ACTCAAAAGATTTAAGTGAAGCACAAA | 58.750 | 29.630 | 0.00 | 0.00 | 36.74 | 2.83 |
100 | 101 | 8.633075 | TCAAAAGATTTAAGTGAAGCACAAAG | 57.367 | 30.769 | 0.00 | 0.00 | 36.74 | 2.77 |
101 | 102 | 8.465999 | TCAAAAGATTTAAGTGAAGCACAAAGA | 58.534 | 29.630 | 0.00 | 0.00 | 36.74 | 2.52 |
102 | 103 | 8.749499 | CAAAAGATTTAAGTGAAGCACAAAGAG | 58.251 | 33.333 | 0.00 | 0.00 | 36.74 | 2.85 |
103 | 104 | 6.006759 | AGATTTAAGTGAAGCACAAAGAGC | 57.993 | 37.500 | 0.00 | 0.00 | 36.74 | 4.09 |
104 | 105 | 5.532406 | AGATTTAAGTGAAGCACAAAGAGCA | 59.468 | 36.000 | 0.00 | 0.00 | 36.74 | 4.26 |
105 | 106 | 5.772825 | TTTAAGTGAAGCACAAAGAGCAT | 57.227 | 34.783 | 0.00 | 0.00 | 36.74 | 3.79 |
106 | 107 | 5.772825 | TTAAGTGAAGCACAAAGAGCATT | 57.227 | 34.783 | 0.00 | 0.00 | 36.74 | 3.56 |
107 | 108 | 3.911661 | AGTGAAGCACAAAGAGCATTC | 57.088 | 42.857 | 0.00 | 0.00 | 36.74 | 2.67 |
108 | 109 | 3.484407 | AGTGAAGCACAAAGAGCATTCT | 58.516 | 40.909 | 0.00 | 0.00 | 36.74 | 2.40 |
109 | 110 | 4.645535 | AGTGAAGCACAAAGAGCATTCTA | 58.354 | 39.130 | 0.00 | 0.00 | 36.74 | 2.10 |
110 | 111 | 5.251764 | AGTGAAGCACAAAGAGCATTCTAT | 58.748 | 37.500 | 0.00 | 0.00 | 36.74 | 1.98 |
111 | 112 | 6.409704 | AGTGAAGCACAAAGAGCATTCTATA | 58.590 | 36.000 | 0.00 | 0.00 | 36.74 | 1.31 |
112 | 113 | 6.881065 | AGTGAAGCACAAAGAGCATTCTATAA | 59.119 | 34.615 | 0.00 | 0.00 | 36.74 | 0.98 |
113 | 114 | 7.391554 | AGTGAAGCACAAAGAGCATTCTATAAA | 59.608 | 33.333 | 0.00 | 0.00 | 36.74 | 1.40 |
114 | 115 | 7.695618 | GTGAAGCACAAAGAGCATTCTATAAAG | 59.304 | 37.037 | 0.00 | 0.00 | 34.08 | 1.85 |
115 | 116 | 6.129053 | AGCACAAAGAGCATTCTATAAAGC | 57.871 | 37.500 | 0.00 | 0.00 | 31.96 | 3.51 |
116 | 117 | 5.067023 | AGCACAAAGAGCATTCTATAAAGCC | 59.933 | 40.000 | 0.00 | 0.00 | 31.96 | 4.35 |
117 | 118 | 5.163622 | GCACAAAGAGCATTCTATAAAGCCA | 60.164 | 40.000 | 0.00 | 0.00 | 31.96 | 4.75 |
118 | 119 | 6.460676 | GCACAAAGAGCATTCTATAAAGCCAT | 60.461 | 38.462 | 0.00 | 0.00 | 31.96 | 4.40 |
119 | 120 | 7.255242 | GCACAAAGAGCATTCTATAAAGCCATA | 60.255 | 37.037 | 0.00 | 0.00 | 31.96 | 2.74 |
120 | 121 | 8.072567 | CACAAAGAGCATTCTATAAAGCCATAC | 58.927 | 37.037 | 0.00 | 0.00 | 31.96 | 2.39 |
121 | 122 | 7.995488 | ACAAAGAGCATTCTATAAAGCCATACT | 59.005 | 33.333 | 0.00 | 0.00 | 31.96 | 2.12 |
122 | 123 | 8.502387 | CAAAGAGCATTCTATAAAGCCATACTC | 58.498 | 37.037 | 0.00 | 0.00 | 31.96 | 2.59 |
123 | 124 | 7.308450 | AGAGCATTCTATAAAGCCATACTCA | 57.692 | 36.000 | 0.00 | 0.00 | 29.49 | 3.41 |
124 | 125 | 7.739825 | AGAGCATTCTATAAAGCCATACTCAA | 58.260 | 34.615 | 0.00 | 0.00 | 29.49 | 3.02 |
125 | 126 | 8.213679 | AGAGCATTCTATAAAGCCATACTCAAA | 58.786 | 33.333 | 0.00 | 0.00 | 29.49 | 2.69 |
126 | 127 | 8.752005 | AGCATTCTATAAAGCCATACTCAAAA | 57.248 | 30.769 | 0.00 | 0.00 | 29.49 | 2.44 |
127 | 128 | 8.844244 | AGCATTCTATAAAGCCATACTCAAAAG | 58.156 | 33.333 | 0.00 | 0.00 | 29.49 | 2.27 |
128 | 129 | 8.840321 | GCATTCTATAAAGCCATACTCAAAAGA | 58.160 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
137 | 138 | 8.635765 | AAGCCATACTCAAAAGATTTAAGTGA | 57.364 | 30.769 | 4.41 | 0.00 | 0.00 | 3.41 |
138 | 139 | 8.635765 | AGCCATACTCAAAAGATTTAAGTGAA | 57.364 | 30.769 | 4.41 | 0.00 | 0.00 | 3.18 |
139 | 140 | 8.734386 | AGCCATACTCAAAAGATTTAAGTGAAG | 58.266 | 33.333 | 4.41 | 0.00 | 0.00 | 3.02 |
140 | 141 | 7.486232 | GCCATACTCAAAAGATTTAAGTGAAGC | 59.514 | 37.037 | 4.41 | 0.00 | 0.00 | 3.86 |
141 | 142 | 8.514594 | CCATACTCAAAAGATTTAAGTGAAGCA | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
142 | 143 | 9.334693 | CATACTCAAAAGATTTAAGTGAAGCAC | 57.665 | 33.333 | 0.00 | 0.00 | 34.10 | 4.40 |
143 | 144 | 7.333528 | ACTCAAAAGATTTAAGTGAAGCACA | 57.666 | 32.000 | 0.00 | 0.00 | 36.74 | 4.57 |
144 | 145 | 7.945134 | ACTCAAAAGATTTAAGTGAAGCACAT | 58.055 | 30.769 | 0.00 | 0.00 | 36.74 | 3.21 |
145 | 146 | 7.864379 | ACTCAAAAGATTTAAGTGAAGCACATG | 59.136 | 33.333 | 0.00 | 0.00 | 36.74 | 3.21 |
146 | 147 | 7.939782 | TCAAAAGATTTAAGTGAAGCACATGA | 58.060 | 30.769 | 0.00 | 0.00 | 36.74 | 3.07 |
147 | 148 | 8.412456 | TCAAAAGATTTAAGTGAAGCACATGAA | 58.588 | 29.630 | 0.00 | 0.00 | 36.74 | 2.57 |
148 | 149 | 8.697067 | CAAAAGATTTAAGTGAAGCACATGAAG | 58.303 | 33.333 | 0.00 | 0.00 | 36.74 | 3.02 |
149 | 150 | 5.947443 | AGATTTAAGTGAAGCACATGAAGC | 58.053 | 37.500 | 0.00 | 2.85 | 36.74 | 3.86 |
150 | 151 | 5.474532 | AGATTTAAGTGAAGCACATGAAGCA | 59.525 | 36.000 | 15.23 | 0.00 | 36.74 | 3.91 |
151 | 152 | 5.710513 | TTTAAGTGAAGCACATGAAGCAT | 57.289 | 34.783 | 15.23 | 5.23 | 36.74 | 3.79 |
152 | 153 | 5.710513 | TTAAGTGAAGCACATGAAGCATT | 57.289 | 34.783 | 15.23 | 7.96 | 36.74 | 3.56 |
153 | 154 | 3.844577 | AGTGAAGCACATGAAGCATTC | 57.155 | 42.857 | 15.23 | 14.44 | 40.48 | 2.67 |
154 | 155 | 2.490903 | AGTGAAGCACATGAAGCATTCC | 59.509 | 45.455 | 15.23 | 10.12 | 39.77 | 3.01 |
155 | 156 | 2.229543 | GTGAAGCACATGAAGCATTCCA | 59.770 | 45.455 | 15.23 | 6.22 | 38.16 | 3.53 |
156 | 157 | 3.093814 | TGAAGCACATGAAGCATTCCAT | 58.906 | 40.909 | 15.23 | 0.00 | 46.93 | 3.41 |
157 | 158 | 4.096833 | GTGAAGCACATGAAGCATTCCATA | 59.903 | 41.667 | 15.23 | 1.93 | 38.16 | 2.74 |
158 | 159 | 4.705991 | TGAAGCACATGAAGCATTCCATAA | 59.294 | 37.500 | 15.23 | 1.68 | 46.93 | 1.90 |
159 | 160 | 5.185442 | TGAAGCACATGAAGCATTCCATAAA | 59.815 | 36.000 | 15.23 | 1.42 | 46.93 | 1.40 |
160 | 161 | 5.864418 | AGCACATGAAGCATTCCATAAAT | 57.136 | 34.783 | 15.23 | 0.00 | 46.93 | 1.40 |
161 | 162 | 5.839621 | AGCACATGAAGCATTCCATAAATC | 58.160 | 37.500 | 15.23 | 0.00 | 46.93 | 2.17 |
162 | 163 | 5.361571 | AGCACATGAAGCATTCCATAAATCA | 59.638 | 36.000 | 15.23 | 0.00 | 46.93 | 2.57 |
163 | 164 | 6.044046 | GCACATGAAGCATTCCATAAATCAA | 58.956 | 36.000 | 0.00 | 0.00 | 46.93 | 2.57 |
164 | 165 | 6.704493 | GCACATGAAGCATTCCATAAATCAAT | 59.296 | 34.615 | 0.00 | 0.00 | 46.93 | 2.57 |
165 | 166 | 7.307160 | GCACATGAAGCATTCCATAAATCAATG | 60.307 | 37.037 | 0.00 | 0.00 | 46.93 | 2.82 |
166 | 167 | 7.923878 | CACATGAAGCATTCCATAAATCAATGA | 59.076 | 33.333 | 0.00 | 0.00 | 46.93 | 2.57 |
167 | 168 | 8.479689 | ACATGAAGCATTCCATAAATCAATGAA | 58.520 | 29.630 | 0.00 | 0.00 | 46.93 | 2.57 |
168 | 169 | 8.761497 | CATGAAGCATTCCATAAATCAATGAAC | 58.239 | 33.333 | 0.00 | 0.00 | 46.93 | 3.18 |
169 | 170 | 6.974048 | TGAAGCATTCCATAAATCAATGAACG | 59.026 | 34.615 | 0.00 | 0.00 | 46.93 | 3.95 |
170 | 171 | 6.698008 | AGCATTCCATAAATCAATGAACGA | 57.302 | 33.333 | 0.00 | 0.00 | 30.31 | 3.85 |
171 | 172 | 6.498304 | AGCATTCCATAAATCAATGAACGAC | 58.502 | 36.000 | 0.00 | 0.00 | 30.31 | 4.34 |
172 | 173 | 6.319658 | AGCATTCCATAAATCAATGAACGACT | 59.680 | 34.615 | 0.00 | 0.00 | 30.31 | 4.18 |
173 | 174 | 7.498900 | AGCATTCCATAAATCAATGAACGACTA | 59.501 | 33.333 | 0.00 | 0.00 | 30.31 | 2.59 |
174 | 175 | 8.292448 | GCATTCCATAAATCAATGAACGACTAT | 58.708 | 33.333 | 0.00 | 0.00 | 30.31 | 2.12 |
175 | 176 | 9.817365 | CATTCCATAAATCAATGAACGACTATC | 57.183 | 33.333 | 0.00 | 0.00 | 30.31 | 2.08 |
176 | 177 | 9.784531 | ATTCCATAAATCAATGAACGACTATCT | 57.215 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
177 | 178 | 8.818141 | TCCATAAATCAATGAACGACTATCTC | 57.182 | 34.615 | 0.00 | 0.00 | 0.00 | 2.75 |
178 | 179 | 8.421002 | TCCATAAATCAATGAACGACTATCTCA | 58.579 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
179 | 180 | 9.212641 | CCATAAATCAATGAACGACTATCTCAT | 57.787 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
185 | 186 | 7.585867 | TCAATGAACGACTATCTCATACTAGC | 58.414 | 38.462 | 0.00 | 0.00 | 0.00 | 3.42 |
186 | 187 | 7.228706 | TCAATGAACGACTATCTCATACTAGCA | 59.771 | 37.037 | 0.00 | 0.00 | 0.00 | 3.49 |
187 | 188 | 7.695480 | ATGAACGACTATCTCATACTAGCAT | 57.305 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
188 | 189 | 6.903419 | TGAACGACTATCTCATACTAGCATG | 58.097 | 40.000 | 0.00 | 0.00 | 0.00 | 4.06 |
189 | 190 | 6.710744 | TGAACGACTATCTCATACTAGCATGA | 59.289 | 38.462 | 5.52 | 5.52 | 33.88 | 3.07 |
190 | 191 | 7.391833 | TGAACGACTATCTCATACTAGCATGAT | 59.608 | 37.037 | 6.10 | 0.00 | 34.50 | 2.45 |
191 | 192 | 7.082700 | ACGACTATCTCATACTAGCATGATG | 57.917 | 40.000 | 6.10 | 1.94 | 34.50 | 3.07 |
192 | 193 | 5.970612 | CGACTATCTCATACTAGCATGATGC | 59.029 | 44.000 | 9.89 | 9.89 | 45.46 | 3.91 |
208 | 209 | 7.792383 | GCATGATGCATATAAGTGACAATTC | 57.208 | 36.000 | 13.36 | 0.00 | 44.26 | 2.17 |
218 | 219 | 9.689075 | CATATAAGTGACAATTCTGTACAAACG | 57.311 | 33.333 | 0.00 | 0.00 | 35.30 | 3.60 |
224 | 225 | 8.280497 | AGTGACAATTCTGTACAAACGATTTAC | 58.720 | 33.333 | 0.00 | 0.00 | 35.30 | 2.01 |
227 | 228 | 9.953825 | GACAATTCTGTACAAACGATTTACTAG | 57.046 | 33.333 | 0.00 | 0.00 | 35.30 | 2.57 |
308 | 311 | 9.784531 | TCAATATTTAAACTGGGCATTTTTGAA | 57.215 | 25.926 | 0.00 | 0.00 | 0.00 | 2.69 |
316 | 319 | 8.688747 | AAACTGGGCATTTTTGAATTTCAATA | 57.311 | 26.923 | 12.39 | 5.51 | 36.11 | 1.90 |
320 | 323 | 9.962783 | CTGGGCATTTTTGAATTTCAATAAAAA | 57.037 | 25.926 | 15.73 | 12.29 | 36.11 | 1.94 |
427 | 431 | 8.756486 | AATCATGTGATCAACTTCCATAATGA | 57.244 | 30.769 | 0.00 | 0.00 | 32.75 | 2.57 |
445 | 449 | 9.859427 | CCATAATGACAGAAAGCTCAAATTTTA | 57.141 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
453 | 457 | 9.515226 | ACAGAAAGCTCAAATTTTATAGGTACA | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
529 | 533 | 8.996651 | AAATTACTCATTTAGATTACCCCCAG | 57.003 | 34.615 | 0.00 | 0.00 | 32.90 | 4.45 |
532 | 536 | 6.749036 | ACTCATTTAGATTACCCCCAGTAG | 57.251 | 41.667 | 0.00 | 0.00 | 30.92 | 2.57 |
546 | 550 | 4.599241 | CCCCCAGTAGAAAGTATGGATCAT | 59.401 | 45.833 | 0.00 | 0.00 | 34.60 | 2.45 |
555 | 562 | 6.349300 | AGAAAGTATGGATCATTGCTAACGT | 58.651 | 36.000 | 0.00 | 0.00 | 0.00 | 3.99 |
559 | 566 | 7.233389 | AGTATGGATCATTGCTAACGTAGAT | 57.767 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
567 | 574 | 2.883574 | TGCTAACGTAGATGGTTTCCG | 58.116 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
633 | 640 | 2.317040 | GAGCCTAGCCCATGTACACTA | 58.683 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
636 | 643 | 4.489737 | AGCCTAGCCCATGTACACTATTA | 58.510 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
690 | 700 | 1.407936 | ATGTGATCCTCGTCCCTCTG | 58.592 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
714 | 972 | 2.158871 | ACTCTCACTAGACGGCTCCTAG | 60.159 | 54.545 | 0.00 | 0.00 | 39.49 | 3.02 |
748 | 1006 | 0.034059 | CCTGCTTGTCGAGACACCTT | 59.966 | 55.000 | 5.30 | 0.00 | 41.67 | 3.50 |
865 | 1123 | 3.127589 | TCAATGTCGTGTTCGTGTTCAT | 58.872 | 40.909 | 0.00 | 0.00 | 38.33 | 2.57 |
882 | 1140 | 5.228635 | GTGTTCATGCTTTATTTGATCAGCG | 59.771 | 40.000 | 0.00 | 0.00 | 34.82 | 5.18 |
986 | 1245 | 5.226194 | TCATTTGTTTCCCCTCCATTTTG | 57.774 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
1461 | 1745 | 5.989777 | AGTTGGATGTTGTACAGTTACAGAC | 59.010 | 40.000 | 5.22 | 1.79 | 39.44 | 3.51 |
1462 | 1746 | 5.801531 | TGGATGTTGTACAGTTACAGACT | 57.198 | 39.130 | 5.22 | 0.00 | 39.44 | 3.24 |
1463 | 1747 | 5.779922 | TGGATGTTGTACAGTTACAGACTC | 58.220 | 41.667 | 5.22 | 0.00 | 39.44 | 3.36 |
1464 | 1748 | 4.857588 | GGATGTTGTACAGTTACAGACTCG | 59.142 | 45.833 | 5.22 | 0.00 | 39.44 | 4.18 |
1465 | 1749 | 4.906065 | TGTTGTACAGTTACAGACTCGT | 57.094 | 40.909 | 0.00 | 0.00 | 39.44 | 4.18 |
1466 | 1750 | 4.603985 | TGTTGTACAGTTACAGACTCGTG | 58.396 | 43.478 | 0.00 | 0.00 | 39.44 | 4.35 |
1467 | 1751 | 3.909776 | TGTACAGTTACAGACTCGTGG | 57.090 | 47.619 | 0.00 | 0.00 | 36.10 | 4.94 |
1468 | 1752 | 3.216800 | TGTACAGTTACAGACTCGTGGT | 58.783 | 45.455 | 0.00 | 0.00 | 36.10 | 4.16 |
1469 | 1753 | 4.388485 | TGTACAGTTACAGACTCGTGGTA | 58.612 | 43.478 | 0.00 | 0.00 | 36.10 | 3.25 |
1470 | 1754 | 3.911661 | ACAGTTACAGACTCGTGGTAC | 57.088 | 47.619 | 0.00 | 0.00 | 36.10 | 3.34 |
1471 | 1755 | 2.555757 | ACAGTTACAGACTCGTGGTACC | 59.444 | 50.000 | 4.43 | 4.43 | 36.10 | 3.34 |
1472 | 1756 | 2.555325 | CAGTTACAGACTCGTGGTACCA | 59.445 | 50.000 | 11.60 | 11.60 | 36.10 | 3.25 |
1519 | 1815 | 8.103948 | AGATCAGTTTGACAATAAGTTCCTTG | 57.896 | 34.615 | 0.00 | 0.00 | 0.00 | 3.61 |
1577 | 1877 | 4.931601 | GGATCTCAATGTTTTCTTTTGGGC | 59.068 | 41.667 | 0.00 | 0.00 | 0.00 | 5.36 |
1579 | 1879 | 3.070878 | TCTCAATGTTTTCTTTTGGGCCC | 59.929 | 43.478 | 17.59 | 17.59 | 0.00 | 5.80 |
1635 | 1952 | 6.045318 | TGCTTGAGTAATTGATGCTAGAGTC | 58.955 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1783 | 2102 | 2.286872 | CAATAGCTGCAGGAACAGAGG | 58.713 | 52.381 | 17.12 | 0.00 | 40.25 | 3.69 |
1815 | 2134 | 0.955428 | TTTGCTCTGACGCCATGGAC | 60.955 | 55.000 | 18.40 | 5.97 | 0.00 | 4.02 |
1887 | 5604 | 2.711542 | AGGAGCAAATTGGGTTAGTCG | 58.288 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
1915 | 5632 | 2.567615 | CCACCCTACTACAAGACTTGCT | 59.432 | 50.000 | 15.24 | 5.45 | 0.00 | 3.91 |
1918 | 5635 | 4.081420 | CACCCTACTACAAGACTTGCTGAT | 60.081 | 45.833 | 15.24 | 0.00 | 0.00 | 2.90 |
1920 | 5637 | 4.355437 | CCTACTACAAGACTTGCTGATCG | 58.645 | 47.826 | 15.24 | 0.29 | 0.00 | 3.69 |
1925 | 5642 | 1.920574 | CAAGACTTGCTGATCGTACGG | 59.079 | 52.381 | 16.52 | 0.00 | 0.00 | 4.02 |
1930 | 5647 | 4.097437 | AGACTTGCTGATCGTACGGAATAA | 59.903 | 41.667 | 16.52 | 0.00 | 0.00 | 1.40 |
1940 | 5657 | 8.515473 | TGATCGTACGGAATAATTCATTGTAG | 57.485 | 34.615 | 16.52 | 0.00 | 0.00 | 2.74 |
1965 | 5682 | 7.015098 | AGAGGTCAAGGAGTGAGACAATATATG | 59.985 | 40.741 | 0.00 | 0.00 | 36.74 | 1.78 |
1971 | 5688 | 6.845908 | AGGAGTGAGACAATATATGCCAAAT | 58.154 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1972 | 5689 | 6.713903 | AGGAGTGAGACAATATATGCCAAATG | 59.286 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
1973 | 5690 | 6.072286 | GGAGTGAGACAATATATGCCAAATGG | 60.072 | 42.308 | 0.00 | 0.00 | 38.53 | 3.16 |
1974 | 5691 | 6.604171 | AGTGAGACAATATATGCCAAATGGA | 58.396 | 36.000 | 2.98 | 0.00 | 37.39 | 3.41 |
1975 | 5692 | 7.062322 | AGTGAGACAATATATGCCAAATGGAA | 58.938 | 34.615 | 2.98 | 0.00 | 37.39 | 3.53 |
1976 | 5693 | 7.013655 | AGTGAGACAATATATGCCAAATGGAAC | 59.986 | 37.037 | 2.98 | 0.00 | 37.39 | 3.62 |
1977 | 5694 | 6.017192 | TGAGACAATATATGCCAAATGGAACG | 60.017 | 38.462 | 2.98 | 0.00 | 37.39 | 3.95 |
1984 | 5701 | 3.781079 | TGCCAAATGGAACGATTCATC | 57.219 | 42.857 | 2.98 | 0.00 | 37.39 | 2.92 |
1989 | 5706 | 3.287867 | AATGGAACGATTCATCCTGCT | 57.712 | 42.857 | 0.00 | 0.00 | 36.64 | 4.24 |
1996 | 5713 | 1.202687 | CGATTCATCCTGCTGGCCTAA | 60.203 | 52.381 | 3.32 | 0.00 | 0.00 | 2.69 |
2037 | 5754 | 7.475771 | TTCAGTTTTGCCATGTTCATTAAAC | 57.524 | 32.000 | 0.00 | 0.00 | 38.43 | 2.01 |
2038 | 5755 | 6.815089 | TCAGTTTTGCCATGTTCATTAAACT | 58.185 | 32.000 | 8.21 | 8.21 | 38.76 | 2.66 |
2039 | 5756 | 7.271511 | TCAGTTTTGCCATGTTCATTAAACTT | 58.728 | 30.769 | 10.09 | 0.00 | 38.76 | 2.66 |
2040 | 5757 | 7.437862 | TCAGTTTTGCCATGTTCATTAAACTTC | 59.562 | 33.333 | 10.09 | 0.00 | 38.76 | 3.01 |
2107 | 5826 | 2.067013 | GACTGAGGCAACCGTACTTTC | 58.933 | 52.381 | 0.00 | 0.00 | 37.17 | 2.62 |
2116 | 5835 | 3.249080 | GCAACCGTACTTTCTTGTGCTAA | 59.751 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
2117 | 5836 | 4.769215 | CAACCGTACTTTCTTGTGCTAAC | 58.231 | 43.478 | 0.00 | 0.00 | 0.00 | 2.34 |
2118 | 5837 | 4.062677 | ACCGTACTTTCTTGTGCTAACA | 57.937 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
2201 | 5933 | 3.299340 | TTGTCGAACCTAGTTCTCTGC | 57.701 | 47.619 | 5.97 | 0.00 | 40.05 | 4.26 |
2204 | 5936 | 1.819288 | TCGAACCTAGTTCTCTGCAGG | 59.181 | 52.381 | 15.13 | 4.77 | 40.05 | 4.85 |
2205 | 5937 | 1.819288 | CGAACCTAGTTCTCTGCAGGA | 59.181 | 52.381 | 15.13 | 7.36 | 40.05 | 3.86 |
2206 | 5938 | 2.428890 | CGAACCTAGTTCTCTGCAGGAT | 59.571 | 50.000 | 15.13 | 0.00 | 40.05 | 3.24 |
2207 | 5939 | 3.118956 | CGAACCTAGTTCTCTGCAGGATT | 60.119 | 47.826 | 15.13 | 4.73 | 40.05 | 3.01 |
2208 | 5940 | 4.438148 | GAACCTAGTTCTCTGCAGGATTC | 58.562 | 47.826 | 15.13 | 6.13 | 39.23 | 2.52 |
2209 | 5941 | 3.445008 | ACCTAGTTCTCTGCAGGATTCA | 58.555 | 45.455 | 15.13 | 0.00 | 32.25 | 2.57 |
2210 | 5942 | 3.840666 | ACCTAGTTCTCTGCAGGATTCAA | 59.159 | 43.478 | 15.13 | 0.00 | 32.25 | 2.69 |
2211 | 5943 | 4.081198 | ACCTAGTTCTCTGCAGGATTCAAG | 60.081 | 45.833 | 15.13 | 2.34 | 32.25 | 3.02 |
2212 | 5944 | 3.347077 | AGTTCTCTGCAGGATTCAAGG | 57.653 | 47.619 | 15.13 | 0.00 | 0.00 | 3.61 |
2213 | 5945 | 2.026449 | AGTTCTCTGCAGGATTCAAGGG | 60.026 | 50.000 | 15.13 | 0.00 | 0.00 | 3.95 |
2214 | 5946 | 0.254178 | TCTCTGCAGGATTCAAGGGC | 59.746 | 55.000 | 15.13 | 0.00 | 0.00 | 5.19 |
2215 | 5947 | 0.255318 | CTCTGCAGGATTCAAGGGCT | 59.745 | 55.000 | 15.13 | 0.00 | 0.00 | 5.19 |
2216 | 5948 | 0.254178 | TCTGCAGGATTCAAGGGCTC | 59.746 | 55.000 | 15.13 | 0.00 | 0.00 | 4.70 |
2217 | 5949 | 0.255318 | CTGCAGGATTCAAGGGCTCT | 59.745 | 55.000 | 5.57 | 0.00 | 0.00 | 4.09 |
2218 | 5950 | 0.700564 | TGCAGGATTCAAGGGCTCTT | 59.299 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 9.866655 | AGCTTGGATATTGGTCAATCTTTATTA | 57.133 | 29.630 | 0.00 | 0.00 | 32.50 | 0.98 |
4 | 5 | 8.636213 | CAGCTTGGATATTGGTCAATCTTTATT | 58.364 | 33.333 | 0.00 | 0.00 | 32.50 | 1.40 |
5 | 6 | 8.000709 | TCAGCTTGGATATTGGTCAATCTTTAT | 58.999 | 33.333 | 0.00 | 0.00 | 32.50 | 1.40 |
6 | 7 | 7.345691 | TCAGCTTGGATATTGGTCAATCTTTA | 58.654 | 34.615 | 0.00 | 0.00 | 32.50 | 1.85 |
7 | 8 | 6.189859 | TCAGCTTGGATATTGGTCAATCTTT | 58.810 | 36.000 | 0.00 | 0.00 | 32.50 | 2.52 |
8 | 9 | 5.759059 | TCAGCTTGGATATTGGTCAATCTT | 58.241 | 37.500 | 0.00 | 0.00 | 32.50 | 2.40 |
9 | 10 | 5.378230 | TCAGCTTGGATATTGGTCAATCT | 57.622 | 39.130 | 0.00 | 0.00 | 32.50 | 2.40 |
10 | 11 | 6.455360 | TTTCAGCTTGGATATTGGTCAATC | 57.545 | 37.500 | 0.00 | 0.00 | 32.50 | 2.67 |
11 | 12 | 6.855763 | TTTTCAGCTTGGATATTGGTCAAT | 57.144 | 33.333 | 1.65 | 1.65 | 34.93 | 2.57 |
12 | 13 | 6.855763 | ATTTTCAGCTTGGATATTGGTCAA | 57.144 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
13 | 14 | 9.812347 | ATATATTTTCAGCTTGGATATTGGTCA | 57.188 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
22 | 23 | 8.840321 | GCTTCACTTATATATTTTCAGCTTGGA | 58.160 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
23 | 24 | 8.623903 | TGCTTCACTTATATATTTTCAGCTTGG | 58.376 | 33.333 | 0.00 | 0.00 | 0.00 | 3.61 |
24 | 25 | 9.443283 | GTGCTTCACTTATATATTTTCAGCTTG | 57.557 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
25 | 26 | 9.177608 | TGTGCTTCACTTATATATTTTCAGCTT | 57.822 | 29.630 | 0.00 | 0.00 | 35.11 | 3.74 |
26 | 27 | 8.616076 | GTGTGCTTCACTTATATATTTTCAGCT | 58.384 | 33.333 | 0.00 | 0.00 | 43.13 | 4.24 |
27 | 28 | 7.584123 | CGTGTGCTTCACTTATATATTTTCAGC | 59.416 | 37.037 | 9.94 | 0.00 | 44.16 | 4.26 |
28 | 29 | 8.817100 | TCGTGTGCTTCACTTATATATTTTCAG | 58.183 | 33.333 | 9.94 | 0.00 | 44.16 | 3.02 |
29 | 30 | 8.710835 | TCGTGTGCTTCACTTATATATTTTCA | 57.289 | 30.769 | 9.94 | 0.00 | 44.16 | 2.69 |
30 | 31 | 9.638300 | CTTCGTGTGCTTCACTTATATATTTTC | 57.362 | 33.333 | 9.94 | 0.00 | 44.16 | 2.29 |
31 | 32 | 8.122952 | GCTTCGTGTGCTTCACTTATATATTTT | 58.877 | 33.333 | 9.94 | 0.00 | 44.16 | 1.82 |
32 | 33 | 7.279981 | TGCTTCGTGTGCTTCACTTATATATTT | 59.720 | 33.333 | 9.94 | 0.00 | 44.16 | 1.40 |
33 | 34 | 6.761242 | TGCTTCGTGTGCTTCACTTATATATT | 59.239 | 34.615 | 9.94 | 0.00 | 44.16 | 1.28 |
34 | 35 | 6.280643 | TGCTTCGTGTGCTTCACTTATATAT | 58.719 | 36.000 | 9.94 | 0.00 | 44.16 | 0.86 |
35 | 36 | 5.656480 | TGCTTCGTGTGCTTCACTTATATA | 58.344 | 37.500 | 9.94 | 0.00 | 44.16 | 0.86 |
36 | 37 | 4.503910 | TGCTTCGTGTGCTTCACTTATAT | 58.496 | 39.130 | 9.94 | 0.00 | 44.16 | 0.86 |
37 | 38 | 3.920446 | TGCTTCGTGTGCTTCACTTATA | 58.080 | 40.909 | 9.94 | 0.00 | 44.16 | 0.98 |
38 | 39 | 2.766313 | TGCTTCGTGTGCTTCACTTAT | 58.234 | 42.857 | 9.94 | 0.00 | 44.16 | 1.73 |
39 | 40 | 2.232756 | TGCTTCGTGTGCTTCACTTA | 57.767 | 45.000 | 9.94 | 0.00 | 44.16 | 2.24 |
40 | 41 | 1.597742 | ATGCTTCGTGTGCTTCACTT | 58.402 | 45.000 | 9.94 | 0.00 | 44.16 | 3.16 |
41 | 42 | 1.532868 | GAATGCTTCGTGTGCTTCACT | 59.467 | 47.619 | 9.94 | 0.00 | 44.16 | 3.41 |
42 | 43 | 1.532868 | AGAATGCTTCGTGTGCTTCAC | 59.467 | 47.619 | 3.22 | 3.22 | 43.03 | 3.18 |
43 | 44 | 1.882912 | AGAATGCTTCGTGTGCTTCA | 58.117 | 45.000 | 0.00 | 0.00 | 34.02 | 3.02 |
44 | 45 | 5.718649 | TTATAGAATGCTTCGTGTGCTTC | 57.281 | 39.130 | 0.00 | 0.00 | 34.02 | 3.86 |
45 | 46 | 5.447818 | GCTTTATAGAATGCTTCGTGTGCTT | 60.448 | 40.000 | 1.02 | 0.00 | 33.88 | 3.91 |
46 | 47 | 4.034510 | GCTTTATAGAATGCTTCGTGTGCT | 59.965 | 41.667 | 1.02 | 0.00 | 33.88 | 4.40 |
47 | 48 | 4.274865 | GCTTTATAGAATGCTTCGTGTGC | 58.725 | 43.478 | 1.02 | 0.00 | 33.88 | 4.57 |
48 | 49 | 4.332543 | TGGCTTTATAGAATGCTTCGTGTG | 59.667 | 41.667 | 7.76 | 0.00 | 36.29 | 3.82 |
49 | 50 | 4.513442 | TGGCTTTATAGAATGCTTCGTGT | 58.487 | 39.130 | 7.76 | 0.00 | 36.29 | 4.49 |
50 | 51 | 5.679734 | ATGGCTTTATAGAATGCTTCGTG | 57.320 | 39.130 | 7.76 | 0.00 | 36.29 | 4.35 |
51 | 52 | 6.525629 | AGTATGGCTTTATAGAATGCTTCGT | 58.474 | 36.000 | 7.76 | 0.00 | 36.29 | 3.85 |
52 | 53 | 6.646653 | TGAGTATGGCTTTATAGAATGCTTCG | 59.353 | 38.462 | 7.76 | 0.00 | 36.29 | 3.79 |
53 | 54 | 7.969536 | TGAGTATGGCTTTATAGAATGCTTC | 57.030 | 36.000 | 7.76 | 0.00 | 36.29 | 3.86 |
54 | 55 | 8.752005 | TTTGAGTATGGCTTTATAGAATGCTT | 57.248 | 30.769 | 7.76 | 0.17 | 36.29 | 3.91 |
55 | 56 | 8.752005 | TTTTGAGTATGGCTTTATAGAATGCT | 57.248 | 30.769 | 7.76 | 0.00 | 36.29 | 3.79 |
56 | 57 | 8.840321 | TCTTTTGAGTATGGCTTTATAGAATGC | 58.160 | 33.333 | 0.00 | 0.00 | 35.49 | 3.56 |
65 | 66 | 9.077885 | TCACTTAAATCTTTTGAGTATGGCTTT | 57.922 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
66 | 67 | 8.635765 | TCACTTAAATCTTTTGAGTATGGCTT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 4.35 |
67 | 68 | 8.635765 | TTCACTTAAATCTTTTGAGTATGGCT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 4.75 |
68 | 69 | 7.486232 | GCTTCACTTAAATCTTTTGAGTATGGC | 59.514 | 37.037 | 0.00 | 0.62 | 0.00 | 4.40 |
69 | 70 | 8.514594 | TGCTTCACTTAAATCTTTTGAGTATGG | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
70 | 71 | 9.334693 | GTGCTTCACTTAAATCTTTTGAGTATG | 57.665 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
71 | 72 | 9.066892 | TGTGCTTCACTTAAATCTTTTGAGTAT | 57.933 | 29.630 | 0.00 | 0.00 | 35.11 | 2.12 |
72 | 73 | 8.445275 | TGTGCTTCACTTAAATCTTTTGAGTA | 57.555 | 30.769 | 0.00 | 0.00 | 35.11 | 2.59 |
73 | 74 | 7.333528 | TGTGCTTCACTTAAATCTTTTGAGT | 57.666 | 32.000 | 0.00 | 0.00 | 35.11 | 3.41 |
74 | 75 | 8.633075 | TTTGTGCTTCACTTAAATCTTTTGAG | 57.367 | 30.769 | 0.00 | 0.00 | 35.11 | 3.02 |
75 | 76 | 8.465999 | TCTTTGTGCTTCACTTAAATCTTTTGA | 58.534 | 29.630 | 0.00 | 0.00 | 35.11 | 2.69 |
76 | 77 | 8.633075 | TCTTTGTGCTTCACTTAAATCTTTTG | 57.367 | 30.769 | 0.00 | 0.00 | 35.11 | 2.44 |
77 | 78 | 7.436376 | GCTCTTTGTGCTTCACTTAAATCTTTT | 59.564 | 33.333 | 0.00 | 0.00 | 35.11 | 2.27 |
78 | 79 | 6.920210 | GCTCTTTGTGCTTCACTTAAATCTTT | 59.080 | 34.615 | 0.00 | 0.00 | 35.11 | 2.52 |
79 | 80 | 6.039717 | TGCTCTTTGTGCTTCACTTAAATCTT | 59.960 | 34.615 | 0.00 | 0.00 | 35.11 | 2.40 |
80 | 81 | 5.532406 | TGCTCTTTGTGCTTCACTTAAATCT | 59.468 | 36.000 | 0.00 | 0.00 | 35.11 | 2.40 |
81 | 82 | 5.762045 | TGCTCTTTGTGCTTCACTTAAATC | 58.238 | 37.500 | 0.00 | 0.00 | 35.11 | 2.17 |
82 | 83 | 5.772825 | TGCTCTTTGTGCTTCACTTAAAT | 57.227 | 34.783 | 0.00 | 0.00 | 35.11 | 1.40 |
83 | 84 | 5.772825 | ATGCTCTTTGTGCTTCACTTAAA | 57.227 | 34.783 | 0.00 | 0.00 | 35.11 | 1.52 |
84 | 85 | 5.532406 | AGAATGCTCTTTGTGCTTCACTTAA | 59.468 | 36.000 | 0.00 | 0.00 | 35.11 | 1.85 |
85 | 86 | 5.065914 | AGAATGCTCTTTGTGCTTCACTTA | 58.934 | 37.500 | 0.00 | 0.00 | 35.11 | 2.24 |
86 | 87 | 3.887716 | AGAATGCTCTTTGTGCTTCACTT | 59.112 | 39.130 | 0.00 | 0.00 | 35.11 | 3.16 |
87 | 88 | 3.484407 | AGAATGCTCTTTGTGCTTCACT | 58.516 | 40.909 | 0.00 | 0.00 | 35.11 | 3.41 |
88 | 89 | 3.911661 | AGAATGCTCTTTGTGCTTCAC | 57.088 | 42.857 | 0.00 | 0.00 | 34.56 | 3.18 |
89 | 90 | 7.627088 | GCTTTATAGAATGCTCTTTGTGCTTCA | 60.627 | 37.037 | 1.02 | 0.00 | 33.88 | 3.02 |
90 | 91 | 6.690528 | GCTTTATAGAATGCTCTTTGTGCTTC | 59.309 | 38.462 | 1.02 | 0.00 | 33.88 | 3.86 |
91 | 92 | 6.405176 | GGCTTTATAGAATGCTCTTTGTGCTT | 60.405 | 38.462 | 7.76 | 0.00 | 36.29 | 3.91 |
92 | 93 | 5.067023 | GGCTTTATAGAATGCTCTTTGTGCT | 59.933 | 40.000 | 7.76 | 0.00 | 36.29 | 4.40 |
93 | 94 | 5.163622 | TGGCTTTATAGAATGCTCTTTGTGC | 60.164 | 40.000 | 7.76 | 0.00 | 36.29 | 4.57 |
94 | 95 | 6.441093 | TGGCTTTATAGAATGCTCTTTGTG | 57.559 | 37.500 | 7.76 | 0.00 | 36.29 | 3.33 |
95 | 96 | 7.995488 | AGTATGGCTTTATAGAATGCTCTTTGT | 59.005 | 33.333 | 7.76 | 0.00 | 36.29 | 2.83 |
96 | 97 | 8.388484 | AGTATGGCTTTATAGAATGCTCTTTG | 57.612 | 34.615 | 7.76 | 0.00 | 36.29 | 2.77 |
97 | 98 | 8.213679 | TGAGTATGGCTTTATAGAATGCTCTTT | 58.786 | 33.333 | 7.76 | 0.00 | 36.29 | 2.52 |
98 | 99 | 7.739825 | TGAGTATGGCTTTATAGAATGCTCTT | 58.260 | 34.615 | 7.76 | 0.97 | 36.29 | 2.85 |
99 | 100 | 7.308450 | TGAGTATGGCTTTATAGAATGCTCT | 57.692 | 36.000 | 7.76 | 2.86 | 36.29 | 4.09 |
100 | 101 | 7.969536 | TTGAGTATGGCTTTATAGAATGCTC | 57.030 | 36.000 | 7.76 | 7.13 | 36.29 | 4.26 |
101 | 102 | 8.752005 | TTTTGAGTATGGCTTTATAGAATGCT | 57.248 | 30.769 | 7.76 | 0.00 | 36.29 | 3.79 |
102 | 103 | 8.840321 | TCTTTTGAGTATGGCTTTATAGAATGC | 58.160 | 33.333 | 0.00 | 0.00 | 35.49 | 3.56 |
111 | 112 | 9.077885 | TCACTTAAATCTTTTGAGTATGGCTTT | 57.922 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
112 | 113 | 8.635765 | TCACTTAAATCTTTTGAGTATGGCTT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 4.35 |
113 | 114 | 8.635765 | TTCACTTAAATCTTTTGAGTATGGCT | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 4.75 |
114 | 115 | 7.486232 | GCTTCACTTAAATCTTTTGAGTATGGC | 59.514 | 37.037 | 0.00 | 0.62 | 0.00 | 4.40 |
115 | 116 | 8.514594 | TGCTTCACTTAAATCTTTTGAGTATGG | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
116 | 117 | 9.334693 | GTGCTTCACTTAAATCTTTTGAGTATG | 57.665 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
117 | 118 | 9.066892 | TGTGCTTCACTTAAATCTTTTGAGTAT | 57.933 | 29.630 | 0.00 | 0.00 | 35.11 | 2.12 |
118 | 119 | 8.445275 | TGTGCTTCACTTAAATCTTTTGAGTA | 57.555 | 30.769 | 0.00 | 0.00 | 35.11 | 2.59 |
119 | 120 | 7.333528 | TGTGCTTCACTTAAATCTTTTGAGT | 57.666 | 32.000 | 0.00 | 0.00 | 35.11 | 3.41 |
120 | 121 | 8.077991 | TCATGTGCTTCACTTAAATCTTTTGAG | 58.922 | 33.333 | 0.00 | 0.00 | 35.11 | 3.02 |
121 | 122 | 7.939782 | TCATGTGCTTCACTTAAATCTTTTGA | 58.060 | 30.769 | 0.00 | 0.00 | 35.11 | 2.69 |
122 | 123 | 8.578308 | TTCATGTGCTTCACTTAAATCTTTTG | 57.422 | 30.769 | 0.00 | 0.00 | 35.11 | 2.44 |
123 | 124 | 7.383300 | GCTTCATGTGCTTCACTTAAATCTTTT | 59.617 | 33.333 | 6.28 | 0.00 | 35.11 | 2.27 |
124 | 125 | 6.865205 | GCTTCATGTGCTTCACTTAAATCTTT | 59.135 | 34.615 | 6.28 | 0.00 | 35.11 | 2.52 |
125 | 126 | 6.016024 | TGCTTCATGTGCTTCACTTAAATCTT | 60.016 | 34.615 | 12.86 | 0.00 | 35.11 | 2.40 |
126 | 127 | 5.474532 | TGCTTCATGTGCTTCACTTAAATCT | 59.525 | 36.000 | 12.86 | 0.00 | 35.11 | 2.40 |
127 | 128 | 5.702865 | TGCTTCATGTGCTTCACTTAAATC | 58.297 | 37.500 | 12.86 | 0.00 | 35.11 | 2.17 |
128 | 129 | 5.710513 | TGCTTCATGTGCTTCACTTAAAT | 57.289 | 34.783 | 12.86 | 0.00 | 35.11 | 1.40 |
129 | 130 | 5.710513 | ATGCTTCATGTGCTTCACTTAAA | 57.289 | 34.783 | 12.86 | 0.00 | 35.11 | 1.52 |
130 | 131 | 5.335897 | GGAATGCTTCATGTGCTTCACTTAA | 60.336 | 40.000 | 12.86 | 0.00 | 35.11 | 1.85 |
131 | 132 | 4.156556 | GGAATGCTTCATGTGCTTCACTTA | 59.843 | 41.667 | 12.86 | 0.00 | 35.11 | 2.24 |
132 | 133 | 3.057033 | GGAATGCTTCATGTGCTTCACTT | 60.057 | 43.478 | 12.86 | 0.00 | 35.11 | 3.16 |
133 | 134 | 2.490903 | GGAATGCTTCATGTGCTTCACT | 59.509 | 45.455 | 12.86 | 0.00 | 35.11 | 3.41 |
134 | 135 | 2.229543 | TGGAATGCTTCATGTGCTTCAC | 59.770 | 45.455 | 12.86 | 0.00 | 34.56 | 3.18 |
135 | 136 | 2.516906 | TGGAATGCTTCATGTGCTTCA | 58.483 | 42.857 | 12.86 | 5.38 | 0.00 | 3.02 |
136 | 137 | 3.795623 | ATGGAATGCTTCATGTGCTTC | 57.204 | 42.857 | 12.86 | 12.48 | 0.00 | 3.86 |
137 | 138 | 5.664294 | TTTATGGAATGCTTCATGTGCTT | 57.336 | 34.783 | 12.86 | 5.78 | 0.00 | 3.91 |
138 | 139 | 5.361571 | TGATTTATGGAATGCTTCATGTGCT | 59.638 | 36.000 | 12.86 | 0.00 | 0.00 | 4.40 |
139 | 140 | 5.593968 | TGATTTATGGAATGCTTCATGTGC | 58.406 | 37.500 | 6.53 | 6.53 | 0.00 | 4.57 |
140 | 141 | 7.923878 | TCATTGATTTATGGAATGCTTCATGTG | 59.076 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
141 | 142 | 8.014070 | TCATTGATTTATGGAATGCTTCATGT | 57.986 | 30.769 | 0.00 | 0.00 | 0.00 | 3.21 |
142 | 143 | 8.761497 | GTTCATTGATTTATGGAATGCTTCATG | 58.239 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
143 | 144 | 7.650504 | CGTTCATTGATTTATGGAATGCTTCAT | 59.349 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
144 | 145 | 6.974048 | CGTTCATTGATTTATGGAATGCTTCA | 59.026 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
145 | 146 | 7.166473 | GTCGTTCATTGATTTATGGAATGCTTC | 59.834 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
146 | 147 | 6.974622 | GTCGTTCATTGATTTATGGAATGCTT | 59.025 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
147 | 148 | 6.319658 | AGTCGTTCATTGATTTATGGAATGCT | 59.680 | 34.615 | 0.00 | 0.00 | 0.00 | 3.79 |
148 | 149 | 6.498304 | AGTCGTTCATTGATTTATGGAATGC | 58.502 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
149 | 150 | 9.817365 | GATAGTCGTTCATTGATTTATGGAATG | 57.183 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
150 | 151 | 9.784531 | AGATAGTCGTTCATTGATTTATGGAAT | 57.215 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
151 | 152 | 9.261180 | GAGATAGTCGTTCATTGATTTATGGAA | 57.739 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
152 | 153 | 8.421002 | TGAGATAGTCGTTCATTGATTTATGGA | 58.579 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
153 | 154 | 8.593492 | TGAGATAGTCGTTCATTGATTTATGG | 57.407 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
159 | 160 | 8.240682 | GCTAGTATGAGATAGTCGTTCATTGAT | 58.759 | 37.037 | 0.00 | 0.00 | 33.81 | 2.57 |
160 | 161 | 7.228706 | TGCTAGTATGAGATAGTCGTTCATTGA | 59.771 | 37.037 | 0.00 | 0.00 | 33.81 | 2.57 |
161 | 162 | 7.363431 | TGCTAGTATGAGATAGTCGTTCATTG | 58.637 | 38.462 | 0.00 | 0.00 | 33.81 | 2.82 |
162 | 163 | 7.511959 | TGCTAGTATGAGATAGTCGTTCATT | 57.488 | 36.000 | 0.00 | 0.00 | 33.81 | 2.57 |
163 | 164 | 7.391833 | TCATGCTAGTATGAGATAGTCGTTCAT | 59.608 | 37.037 | 18.36 | 0.00 | 32.39 | 2.57 |
164 | 165 | 6.710744 | TCATGCTAGTATGAGATAGTCGTTCA | 59.289 | 38.462 | 18.36 | 0.00 | 32.39 | 3.18 |
165 | 166 | 7.135089 | TCATGCTAGTATGAGATAGTCGTTC | 57.865 | 40.000 | 18.36 | 0.00 | 32.39 | 3.95 |
166 | 167 | 7.534282 | CATCATGCTAGTATGAGATAGTCGTT | 58.466 | 38.462 | 24.82 | 5.93 | 40.16 | 3.85 |
167 | 168 | 6.404184 | GCATCATGCTAGTATGAGATAGTCGT | 60.404 | 42.308 | 24.82 | 6.57 | 40.16 | 4.34 |
168 | 169 | 5.970612 | GCATCATGCTAGTATGAGATAGTCG | 59.029 | 44.000 | 24.82 | 10.65 | 40.16 | 4.18 |
169 | 170 | 6.861144 | TGCATCATGCTAGTATGAGATAGTC | 58.139 | 40.000 | 24.82 | 12.28 | 45.31 | 2.59 |
170 | 171 | 6.847421 | TGCATCATGCTAGTATGAGATAGT | 57.153 | 37.500 | 24.82 | 8.53 | 45.31 | 2.12 |
173 | 174 | 9.984190 | CTTATATGCATCATGCTAGTATGAGAT | 57.016 | 33.333 | 24.82 | 18.50 | 45.31 | 2.75 |
174 | 175 | 8.975295 | ACTTATATGCATCATGCTAGTATGAGA | 58.025 | 33.333 | 24.82 | 13.83 | 45.31 | 3.27 |
175 | 176 | 9.032420 | CACTTATATGCATCATGCTAGTATGAG | 57.968 | 37.037 | 24.82 | 18.06 | 45.31 | 2.90 |
176 | 177 | 8.752187 | TCACTTATATGCATCATGCTAGTATGA | 58.248 | 33.333 | 23.38 | 23.38 | 45.31 | 2.15 |
177 | 178 | 8.815189 | GTCACTTATATGCATCATGCTAGTATG | 58.185 | 37.037 | 11.84 | 14.12 | 45.31 | 2.39 |
178 | 179 | 8.534496 | TGTCACTTATATGCATCATGCTAGTAT | 58.466 | 33.333 | 11.84 | 9.17 | 45.31 | 2.12 |
179 | 180 | 7.895759 | TGTCACTTATATGCATCATGCTAGTA | 58.104 | 34.615 | 11.84 | 1.90 | 45.31 | 1.82 |
180 | 181 | 6.762333 | TGTCACTTATATGCATCATGCTAGT | 58.238 | 36.000 | 11.84 | 3.91 | 45.31 | 2.57 |
181 | 182 | 7.662604 | TTGTCACTTATATGCATCATGCTAG | 57.337 | 36.000 | 11.84 | 3.30 | 45.31 | 3.42 |
182 | 183 | 8.625786 | AATTGTCACTTATATGCATCATGCTA | 57.374 | 30.769 | 11.84 | 1.19 | 45.31 | 3.49 |
183 | 184 | 7.447545 | AGAATTGTCACTTATATGCATCATGCT | 59.552 | 33.333 | 11.84 | 0.00 | 45.31 | 3.79 |
184 | 185 | 7.537649 | CAGAATTGTCACTTATATGCATCATGC | 59.462 | 37.037 | 0.19 | 1.35 | 45.29 | 4.06 |
185 | 186 | 8.565416 | ACAGAATTGTCACTTATATGCATCATG | 58.435 | 33.333 | 0.19 | 0.00 | 29.46 | 3.07 |
186 | 187 | 8.687292 | ACAGAATTGTCACTTATATGCATCAT | 57.313 | 30.769 | 0.19 | 0.00 | 29.46 | 2.45 |
187 | 188 | 9.045223 | GTACAGAATTGTCACTTATATGCATCA | 57.955 | 33.333 | 0.19 | 0.00 | 38.76 | 3.07 |
188 | 189 | 9.045223 | TGTACAGAATTGTCACTTATATGCATC | 57.955 | 33.333 | 0.19 | 0.00 | 38.76 | 3.91 |
189 | 190 | 8.962884 | TGTACAGAATTGTCACTTATATGCAT | 57.037 | 30.769 | 3.79 | 3.79 | 38.76 | 3.96 |
190 | 191 | 8.785329 | TTGTACAGAATTGTCACTTATATGCA | 57.215 | 30.769 | 0.00 | 0.00 | 38.76 | 3.96 |
191 | 192 | 9.490663 | GTTTGTACAGAATTGTCACTTATATGC | 57.509 | 33.333 | 0.00 | 0.00 | 38.76 | 3.14 |
192 | 193 | 9.689075 | CGTTTGTACAGAATTGTCACTTATATG | 57.311 | 33.333 | 0.00 | 0.00 | 38.76 | 1.78 |
193 | 194 | 9.647797 | TCGTTTGTACAGAATTGTCACTTATAT | 57.352 | 29.630 | 0.00 | 0.00 | 38.76 | 0.86 |
194 | 195 | 9.647797 | ATCGTTTGTACAGAATTGTCACTTATA | 57.352 | 29.630 | 0.00 | 0.00 | 38.76 | 0.98 |
195 | 196 | 7.956420 | TCGTTTGTACAGAATTGTCACTTAT | 57.044 | 32.000 | 0.00 | 0.00 | 38.76 | 1.73 |
196 | 197 | 7.956420 | ATCGTTTGTACAGAATTGTCACTTA | 57.044 | 32.000 | 0.00 | 0.00 | 38.76 | 2.24 |
427 | 431 | 9.515226 | TGTACCTATAAAATTTGAGCTTTCTGT | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
505 | 509 | 8.114301 | ACTGGGGGTAATCTAAATGAGTAATT | 57.886 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
511 | 515 | 7.404980 | ACTTTCTACTGGGGGTAATCTAAATGA | 59.595 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
529 | 533 | 7.438459 | ACGTTAGCAATGATCCATACTTTCTAC | 59.562 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
532 | 536 | 6.604735 | ACGTTAGCAATGATCCATACTTTC | 57.395 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
546 | 550 | 3.255725 | CGGAAACCATCTACGTTAGCAA | 58.744 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
559 | 566 | 8.178964 | CGAAAATTTCATCTATAACGGAAACCA | 58.821 | 33.333 | 6.53 | 0.00 | 32.65 | 3.67 |
690 | 700 | 1.937899 | GAGCCGTCTAGTGAGAGTCTC | 59.062 | 57.143 | 13.56 | 13.56 | 30.20 | 3.36 |
714 | 972 | 0.036022 | GCAGGCATGGAGGATAGGAC | 59.964 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
865 | 1123 | 5.237127 | CAGATACCGCTGATCAAATAAAGCA | 59.763 | 40.000 | 0.00 | 0.00 | 38.14 | 3.91 |
882 | 1140 | 2.288666 | TCCGCAAATGAAGCAGATACC | 58.711 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
1249 | 1515 | 3.230284 | TCCATGGAGCGATGGACC | 58.770 | 61.111 | 11.44 | 0.00 | 45.85 | 4.46 |
1461 | 1745 | 4.695455 | ACTGAAAATGAATGGTACCACGAG | 59.305 | 41.667 | 19.09 | 5.21 | 0.00 | 4.18 |
1462 | 1746 | 4.647611 | ACTGAAAATGAATGGTACCACGA | 58.352 | 39.130 | 19.09 | 4.06 | 0.00 | 4.35 |
1463 | 1747 | 5.049060 | TGAACTGAAAATGAATGGTACCACG | 60.049 | 40.000 | 19.09 | 1.46 | 0.00 | 4.94 |
1464 | 1748 | 6.325919 | TGAACTGAAAATGAATGGTACCAC | 57.674 | 37.500 | 19.09 | 6.10 | 0.00 | 4.16 |
1465 | 1749 | 7.537596 | AATGAACTGAAAATGAATGGTACCA | 57.462 | 32.000 | 18.99 | 18.99 | 0.00 | 3.25 |
1466 | 1750 | 7.872483 | ACAAATGAACTGAAAATGAATGGTACC | 59.128 | 33.333 | 4.43 | 4.43 | 0.00 | 3.34 |
1467 | 1751 | 8.702438 | CACAAATGAACTGAAAATGAATGGTAC | 58.298 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
1468 | 1752 | 8.637099 | TCACAAATGAACTGAAAATGAATGGTA | 58.363 | 29.630 | 0.00 | 0.00 | 0.00 | 3.25 |
1469 | 1753 | 7.499292 | TCACAAATGAACTGAAAATGAATGGT | 58.501 | 30.769 | 0.00 | 0.00 | 0.00 | 3.55 |
1470 | 1754 | 7.868922 | TCTCACAAATGAACTGAAAATGAATGG | 59.131 | 33.333 | 0.00 | 0.00 | 33.30 | 3.16 |
1471 | 1755 | 8.806177 | TCTCACAAATGAACTGAAAATGAATG | 57.194 | 30.769 | 0.00 | 0.00 | 33.30 | 2.67 |
1472 | 1756 | 9.635520 | GATCTCACAAATGAACTGAAAATGAAT | 57.364 | 29.630 | 0.00 | 0.00 | 33.30 | 2.57 |
1519 | 1815 | 1.293924 | CGGCATGAACATCTCAGTCC | 58.706 | 55.000 | 0.00 | 0.00 | 37.52 | 3.85 |
1577 | 1877 | 6.048509 | AGTGAATAAACAAACAGCAAAAGGG | 58.951 | 36.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1579 | 1879 | 7.754069 | TGAGTGAATAAACAAACAGCAAAAG | 57.246 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |
1635 | 1952 | 2.847327 | ACACATGGTCCAAGTGAGAG | 57.153 | 50.000 | 29.22 | 7.40 | 35.44 | 3.20 |
1691 | 2008 | 0.109723 | ACAGGTTGGCGTATGGTTGT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1783 | 2102 | 1.880027 | AGAGCAAACCAACGGATGAAC | 59.120 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
1787 | 2106 | 1.523758 | GTCAGAGCAAACCAACGGAT | 58.476 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1789 | 2108 | 1.569493 | CGTCAGAGCAAACCAACGG | 59.431 | 57.895 | 0.00 | 0.00 | 0.00 | 4.44 |
1790 | 2109 | 1.082756 | GCGTCAGAGCAAACCAACG | 60.083 | 57.895 | 0.00 | 0.00 | 37.05 | 4.10 |
1815 | 2134 | 1.517257 | CACGCTAGTGCCTTCTCCG | 60.517 | 63.158 | 2.40 | 0.00 | 41.94 | 4.63 |
1887 | 5604 | 1.272807 | TGTAGTAGGGTGGTTCAGGC | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1915 | 5632 | 8.354426 | TCTACAATGAATTATTCCGTACGATCA | 58.646 | 33.333 | 18.76 | 9.25 | 0.00 | 2.92 |
1918 | 5635 | 7.143340 | CCTCTACAATGAATTATTCCGTACGA | 58.857 | 38.462 | 18.76 | 0.00 | 0.00 | 3.43 |
1920 | 5637 | 7.924412 | TGACCTCTACAATGAATTATTCCGTAC | 59.076 | 37.037 | 2.22 | 0.00 | 0.00 | 3.67 |
1925 | 5642 | 8.964476 | TCCTTGACCTCTACAATGAATTATTC | 57.036 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
1930 | 5647 | 5.485353 | TCACTCCTTGACCTCTACAATGAAT | 59.515 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1940 | 5657 | 3.971245 | ATTGTCTCACTCCTTGACCTC | 57.029 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
1965 | 5682 | 2.689983 | AGGATGAATCGTTCCATTTGGC | 59.310 | 45.455 | 5.10 | 0.00 | 34.27 | 4.52 |
1971 | 5688 | 1.407299 | CCAGCAGGATGAATCGTTCCA | 60.407 | 52.381 | 5.10 | 0.00 | 39.69 | 3.53 |
1972 | 5689 | 1.303309 | CCAGCAGGATGAATCGTTCC | 58.697 | 55.000 | 0.00 | 0.00 | 39.69 | 3.62 |
1973 | 5690 | 0.659957 | GCCAGCAGGATGAATCGTTC | 59.340 | 55.000 | 0.00 | 0.00 | 39.69 | 3.95 |
1974 | 5691 | 0.749454 | GGCCAGCAGGATGAATCGTT | 60.749 | 55.000 | 0.00 | 0.00 | 39.69 | 3.85 |
1975 | 5692 | 1.153086 | GGCCAGCAGGATGAATCGT | 60.153 | 57.895 | 0.00 | 0.00 | 39.69 | 3.73 |
1976 | 5693 | 0.394192 | TAGGCCAGCAGGATGAATCG | 59.606 | 55.000 | 5.01 | 0.00 | 39.69 | 3.34 |
1977 | 5694 | 2.645838 | TTAGGCCAGCAGGATGAATC | 57.354 | 50.000 | 5.01 | 0.00 | 39.69 | 2.52 |
1996 | 5713 | 7.815398 | AAACTGAAAACGGTTTACGATTTTT | 57.185 | 28.000 | 6.53 | 0.33 | 45.71 | 1.94 |
2008 | 5725 | 2.820330 | ACATGGCAAAACTGAAAACGG | 58.180 | 42.857 | 0.00 | 0.00 | 0.00 | 4.44 |
2009 | 5726 | 3.862267 | TGAACATGGCAAAACTGAAAACG | 59.138 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
2066 | 5785 | 8.103305 | TCAGTCAGTTTAGCTCTTCCATTATTT | 58.897 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2069 | 5788 | 6.351371 | CCTCAGTCAGTTTAGCTCTTCCATTA | 60.351 | 42.308 | 0.00 | 0.00 | 0.00 | 1.90 |
2081 | 5800 | 1.414919 | ACGGTTGCCTCAGTCAGTTTA | 59.585 | 47.619 | 0.00 | 0.00 | 0.00 | 2.01 |
2089 | 5808 | 2.457366 | AGAAAGTACGGTTGCCTCAG | 57.543 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2125 | 5844 | 2.158726 | AGGGTTGCCTTAACTCGTTCAA | 60.159 | 45.455 | 0.00 | 0.00 | 44.77 | 2.69 |
2132 | 5851 | 4.448720 | ACAAAGTAGGGTTGCCTTAACT | 57.551 | 40.909 | 0.00 | 0.00 | 39.31 | 2.24 |
2180 | 5912 | 3.069016 | TGCAGAGAACTAGGTTCGACAAA | 59.931 | 43.478 | 0.00 | 0.00 | 45.96 | 2.83 |
2183 | 5915 | 2.416162 | CCTGCAGAGAACTAGGTTCGAC | 60.416 | 54.545 | 17.39 | 4.37 | 45.96 | 4.20 |
2185 | 5917 | 1.819288 | TCCTGCAGAGAACTAGGTTCG | 59.181 | 52.381 | 17.39 | 0.00 | 45.96 | 3.95 |
2186 | 5918 | 4.081420 | TGAATCCTGCAGAGAACTAGGTTC | 60.081 | 45.833 | 17.39 | 9.03 | 42.25 | 3.62 |
2189 | 5921 | 4.440880 | CTTGAATCCTGCAGAGAACTAGG | 58.559 | 47.826 | 17.39 | 0.00 | 0.00 | 3.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.