Multiple sequence alignment - TraesCS7B01G027100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G027100 chr7B 100.000 3010 0 0 1 3010 25959186 25962195 0.000000e+00 5559.0
1 TraesCS7B01G027100 chr7B 92.055 944 62 7 2078 3010 740818667 740819608 0.000000e+00 1315.0
2 TraesCS7B01G027100 chr7B 91.949 944 62 8 2079 3010 740892843 740893784 0.000000e+00 1310.0
3 TraesCS7B01G027100 chr7D 89.992 1239 61 22 823 2032 78318107 78319311 0.000000e+00 1543.0
4 TraesCS7B01G027100 chr7D 89.895 950 78 12 2076 3010 555186753 555187699 0.000000e+00 1206.0
5 TraesCS7B01G027100 chr7D 89.757 947 47 16 634 1538 78768042 78768980 0.000000e+00 1166.0
6 TraesCS7B01G027100 chr7D 91.875 320 13 4 1757 2076 78769319 78769625 4.610000e-118 435.0
7 TraesCS7B01G027100 chr7D 90.000 230 8 12 408 636 78767553 78767768 1.770000e-72 283.0
8 TraesCS7B01G027100 chr7D 94.340 53 3 0 2024 2076 78319882 78319934 6.920000e-12 82.4
9 TraesCS7B01G027100 chr7A 88.448 1108 65 21 906 1984 81784326 81785399 0.000000e+00 1279.0
10 TraesCS7B01G027100 chr7A 94.253 87 4 1 833 918 81784216 81784302 6.770000e-27 132.0
11 TraesCS7B01G027100 chr2B 91.102 944 71 7 2078 3010 698224504 698225445 0.000000e+00 1266.0
12 TraesCS7B01G027100 chr2B 88.783 945 74 11 2077 3010 28359184 28360107 0.000000e+00 1129.0
13 TraesCS7B01G027100 chr2B 96.951 164 5 0 104 267 37433296 37433133 2.960000e-70 276.0
14 TraesCS7B01G027100 chr2B 95.238 168 8 0 100 267 302047274 302047441 1.780000e-67 267.0
15 TraesCS7B01G027100 chr4B 91.092 943 67 11 2079 3008 45492201 45493139 0.000000e+00 1260.0
16 TraesCS7B01G027100 chr5B 90.526 950 76 8 2072 3010 649570347 649571293 0.000000e+00 1243.0
17 TraesCS7B01G027100 chr1D 90.285 947 78 7 2077 3010 443437761 443436816 0.000000e+00 1227.0
18 TraesCS7B01G027100 chr1D 91.709 784 50 9 2076 2848 420656718 420655939 0.000000e+00 1074.0
19 TraesCS7B01G027100 chr2D 89.873 948 79 8 2078 3010 501685851 501686796 0.000000e+00 1203.0
20 TraesCS7B01G027100 chr6D 90.429 909 75 6 2113 3010 470107806 470106899 0.000000e+00 1186.0
21 TraesCS7B01G027100 chr6D 88.660 291 26 3 1248 1535 172117057 172117343 6.180000e-92 348.0
22 TraesCS7B01G027100 chr6D 79.853 407 45 21 1680 2062 172135428 172135821 2.300000e-66 263.0
23 TraesCS7B01G027100 chr6D 89.720 107 8 2 1073 1176 172116583 172116689 1.880000e-27 134.0
24 TraesCS7B01G027100 chr3D 91.408 838 68 4 2175 3010 179206934 179207769 0.000000e+00 1146.0
25 TraesCS7B01G027100 chr3D 83.146 89 11 3 2078 2166 606953577 606953661 8.950000e-11 78.7
26 TraesCS7B01G027100 chr2A 88.482 955 93 10 2071 3010 759481537 759480585 0.000000e+00 1138.0
27 TraesCS7B01G027100 chr5A 89.726 438 33 6 2075 2502 453881131 453881566 1.580000e-152 549.0
28 TraesCS7B01G027100 chr6B 88.095 294 27 4 1248 1538 382061471 382061183 2.870000e-90 342.0
29 TraesCS7B01G027100 chr6B 95.758 165 7 0 104 268 578459051 578458887 1.780000e-67 267.0
30 TraesCS7B01G027100 chr6B 95.210 167 8 0 104 270 222683702 222683536 6.400000e-67 265.0
31 TraesCS7B01G027100 chr6B 94.118 170 10 0 104 273 29399883 29400052 2.980000e-65 259.0
32 TraesCS7B01G027100 chr6B 79.218 409 48 19 1683 2065 382040127 382039730 1.790000e-62 250.0
33 TraesCS7B01G027100 chr6B 91.589 107 6 2 1073 1176 382061901 382061795 8.700000e-31 145.0
34 TraesCS7B01G027100 chr6A 90.456 241 23 0 1298 1538 242204915 242204675 4.840000e-83 318.0
35 TraesCS7B01G027100 chr6A 79.268 410 47 18 1683 2065 242184889 242184491 4.980000e-63 252.0
36 TraesCS7B01G027100 chr6A 91.589 107 6 2 1073 1176 242205255 242205149 8.700000e-31 145.0
37 TraesCS7B01G027100 chr4A 94.318 176 10 0 101 276 713022018 713022193 1.380000e-68 270.0
38 TraesCS7B01G027100 chr3B 95.266 169 8 0 101 269 52744109 52743941 4.950000e-68 268.0
39 TraesCS7B01G027100 chr3B 95.210 167 8 0 104 270 545070601 545070435 6.400000e-67 265.0
40 TraesCS7B01G027100 chr5D 95.210 167 8 0 101 267 198477554 198477388 6.400000e-67 265.0
41 TraesCS7B01G027100 chr3A 80.315 127 16 2 2135 2252 742474333 742474459 1.490000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G027100 chr7B 25959186 25962195 3009 False 5559.0 5559 100.0000 1 3010 1 chr7B.!!$F1 3009
1 TraesCS7B01G027100 chr7B 740818667 740819608 941 False 1315.0 1315 92.0550 2078 3010 1 chr7B.!!$F2 932
2 TraesCS7B01G027100 chr7B 740892843 740893784 941 False 1310.0 1310 91.9490 2079 3010 1 chr7B.!!$F3 931
3 TraesCS7B01G027100 chr7D 555186753 555187699 946 False 1206.0 1206 89.8950 2076 3010 1 chr7D.!!$F1 934
4 TraesCS7B01G027100 chr7D 78318107 78319934 1827 False 812.7 1543 92.1660 823 2076 2 chr7D.!!$F2 1253
5 TraesCS7B01G027100 chr7D 78767553 78769625 2072 False 628.0 1166 90.5440 408 2076 3 chr7D.!!$F3 1668
6 TraesCS7B01G027100 chr7A 81784216 81785399 1183 False 705.5 1279 91.3505 833 1984 2 chr7A.!!$F1 1151
7 TraesCS7B01G027100 chr2B 698224504 698225445 941 False 1266.0 1266 91.1020 2078 3010 1 chr2B.!!$F3 932
8 TraesCS7B01G027100 chr2B 28359184 28360107 923 False 1129.0 1129 88.7830 2077 3010 1 chr2B.!!$F1 933
9 TraesCS7B01G027100 chr4B 45492201 45493139 938 False 1260.0 1260 91.0920 2079 3008 1 chr4B.!!$F1 929
10 TraesCS7B01G027100 chr5B 649570347 649571293 946 False 1243.0 1243 90.5260 2072 3010 1 chr5B.!!$F1 938
11 TraesCS7B01G027100 chr1D 443436816 443437761 945 True 1227.0 1227 90.2850 2077 3010 1 chr1D.!!$R2 933
12 TraesCS7B01G027100 chr1D 420655939 420656718 779 True 1074.0 1074 91.7090 2076 2848 1 chr1D.!!$R1 772
13 TraesCS7B01G027100 chr2D 501685851 501686796 945 False 1203.0 1203 89.8730 2078 3010 1 chr2D.!!$F1 932
14 TraesCS7B01G027100 chr6D 470106899 470107806 907 True 1186.0 1186 90.4290 2113 3010 1 chr6D.!!$R1 897
15 TraesCS7B01G027100 chr6D 172116583 172117343 760 False 241.0 348 89.1900 1073 1535 2 chr6D.!!$F2 462
16 TraesCS7B01G027100 chr3D 179206934 179207769 835 False 1146.0 1146 91.4080 2175 3010 1 chr3D.!!$F1 835
17 TraesCS7B01G027100 chr2A 759480585 759481537 952 True 1138.0 1138 88.4820 2071 3010 1 chr2A.!!$R1 939
18 TraesCS7B01G027100 chr6B 382061183 382061901 718 True 243.5 342 89.8420 1073 1538 2 chr6B.!!$R4 465
19 TraesCS7B01G027100 chr6A 242204675 242205255 580 True 231.5 318 91.0225 1073 1538 2 chr6A.!!$R2 465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.0 0.00 0.0 0.00 4.30 F
597 599 0.179073 CATCCATCGCGGTCTTTCCT 60.179 55.0 6.13 0.0 35.57 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1005 1335 0.321830 CCGGCCGGGAACTTCTTAAA 60.322 55.000 37.42 0.0 38.47 1.52 R
2334 3789 1.137872 GAGATGGTGACGCTCTGGAAT 59.862 52.381 0.00 0.0 33.18 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.952714 GCCAAAGTCAGTCCATGCT 58.047 52.632 0.00 0.00 0.00 3.79
19 20 0.524862 GCCAAAGTCAGTCCATGCTG 59.475 55.000 0.00 0.00 37.81 4.41
20 21 1.901591 CCAAAGTCAGTCCATGCTGT 58.098 50.000 0.98 0.00 37.70 4.40
21 22 2.875672 GCCAAAGTCAGTCCATGCTGTA 60.876 50.000 0.98 0.00 37.70 2.74
22 23 3.005554 CCAAAGTCAGTCCATGCTGTAG 58.994 50.000 0.98 0.00 37.70 2.74
23 24 2.393271 AAGTCAGTCCATGCTGTAGC 57.607 50.000 0.00 0.00 42.50 3.58
24 25 0.539051 AGTCAGTCCATGCTGTAGCC 59.461 55.000 0.80 0.00 41.18 3.93
25 26 0.250234 GTCAGTCCATGCTGTAGCCA 59.750 55.000 0.80 0.00 41.18 4.75
26 27 0.983467 TCAGTCCATGCTGTAGCCAA 59.017 50.000 0.80 0.00 41.18 4.52
27 28 1.561076 TCAGTCCATGCTGTAGCCAAT 59.439 47.619 0.80 0.00 41.18 3.16
28 29 2.025981 TCAGTCCATGCTGTAGCCAATT 60.026 45.455 0.80 0.00 41.18 2.32
29 30 2.756760 CAGTCCATGCTGTAGCCAATTT 59.243 45.455 0.80 0.00 41.18 1.82
30 31 3.194116 CAGTCCATGCTGTAGCCAATTTT 59.806 43.478 0.80 0.00 41.18 1.82
31 32 3.834231 AGTCCATGCTGTAGCCAATTTTT 59.166 39.130 0.80 0.00 41.18 1.94
51 52 5.909621 TTTTCGGACTACATAGTGCTAGT 57.090 39.130 8.66 0.00 41.76 2.57
52 53 5.909621 TTTCGGACTACATAGTGCTAGTT 57.090 39.130 8.66 0.00 41.76 2.24
53 54 4.895224 TCGGACTACATAGTGCTAGTTG 57.105 45.455 8.66 0.00 41.76 3.16
54 55 4.520179 TCGGACTACATAGTGCTAGTTGA 58.480 43.478 8.66 0.00 41.76 3.18
55 56 5.131067 TCGGACTACATAGTGCTAGTTGAT 58.869 41.667 8.66 0.00 41.76 2.57
56 57 5.238868 TCGGACTACATAGTGCTAGTTGATC 59.761 44.000 8.66 0.00 41.76 2.92
57 58 5.239744 CGGACTACATAGTGCTAGTTGATCT 59.760 44.000 8.66 0.00 41.76 2.75
58 59 6.427242 CGGACTACATAGTGCTAGTTGATCTA 59.573 42.308 8.66 0.00 41.76 1.98
59 60 7.360522 CGGACTACATAGTGCTAGTTGATCTAG 60.361 44.444 8.66 0.00 41.76 2.43
60 61 7.662258 GGACTACATAGTGCTAGTTGATCTAGA 59.338 40.741 0.00 0.00 41.35 2.43
61 62 8.982091 ACTACATAGTGCTAGTTGATCTAGAA 57.018 34.615 0.00 0.00 45.60 2.10
62 63 9.062524 ACTACATAGTGCTAGTTGATCTAGAAG 57.937 37.037 0.00 0.00 45.60 2.85
63 64 7.889873 ACATAGTGCTAGTTGATCTAGAAGT 57.110 36.000 0.00 0.00 46.53 3.01
64 65 8.982091 ACATAGTGCTAGTTGATCTAGAAGTA 57.018 34.615 0.00 0.00 46.53 2.24
65 66 8.842280 ACATAGTGCTAGTTGATCTAGAAGTAC 58.158 37.037 0.00 0.00 46.53 2.73
66 67 9.062524 CATAGTGCTAGTTGATCTAGAAGTACT 57.937 37.037 13.07 13.07 46.53 2.73
68 69 8.671384 AGTGCTAGTTGATCTAGAAGTACTAG 57.329 38.462 22.07 22.07 46.53 2.57
69 70 8.269317 AGTGCTAGTTGATCTAGAAGTACTAGT 58.731 37.037 24.45 0.00 46.53 2.57
70 71 8.895737 GTGCTAGTTGATCTAGAAGTACTAGTT 58.104 37.037 24.45 0.03 46.53 2.24
71 72 8.894731 TGCTAGTTGATCTAGAAGTACTAGTTG 58.105 37.037 24.45 12.02 46.53 3.16
72 73 9.111613 GCTAGTTGATCTAGAAGTACTAGTTGA 57.888 37.037 24.45 0.00 46.53 3.18
75 76 9.914834 AGTTGATCTAGAAGTACTAGTTGATCT 57.085 33.333 19.92 11.74 46.15 2.75
106 107 9.257428 AGTGCTTATCTAGAAAAAGGTACTACT 57.743 33.333 16.02 6.81 38.49 2.57
107 108 9.518906 GTGCTTATCTAGAAAAAGGTACTACTC 57.481 37.037 16.02 2.64 38.49 2.59
108 109 8.693625 TGCTTATCTAGAAAAAGGTACTACTCC 58.306 37.037 16.02 2.13 38.49 3.85
109 110 8.143193 GCTTATCTAGAAAAAGGTACTACTCCC 58.857 40.741 16.02 0.00 38.49 4.30
110 111 9.423964 CTTATCTAGAAAAAGGTACTACTCCCT 57.576 37.037 0.00 0.00 38.49 4.20
111 112 7.901283 ATCTAGAAAAAGGTACTACTCCCTC 57.099 40.000 0.00 0.00 38.49 4.30
112 113 6.193504 TCTAGAAAAAGGTACTACTCCCTCC 58.806 44.000 0.00 0.00 38.49 4.30
113 114 3.768215 AGAAAAAGGTACTACTCCCTCCG 59.232 47.826 0.00 0.00 38.49 4.63
114 115 2.915657 AAAGGTACTACTCCCTCCGT 57.084 50.000 0.00 0.00 38.49 4.69
115 116 2.915657 AAGGTACTACTCCCTCCGTT 57.084 50.000 0.00 0.00 38.49 4.44
116 117 2.433662 AGGTACTACTCCCTCCGTTC 57.566 55.000 0.00 0.00 36.02 3.95
117 118 1.064091 AGGTACTACTCCCTCCGTTCC 60.064 57.143 0.00 0.00 36.02 3.62
118 119 1.020437 GTACTACTCCCTCCGTTCCG 58.980 60.000 0.00 0.00 0.00 4.30
119 120 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
120 121 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
121 122 1.180029 CTACTCCCTCCGTTCCGAAA 58.820 55.000 0.00 0.00 0.00 3.46
122 123 1.755380 CTACTCCCTCCGTTCCGAAAT 59.245 52.381 0.00 0.00 0.00 2.17
123 124 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
124 125 2.395619 ACTCCCTCCGTTCCGAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
125 126 2.770232 ACTCCCTCCGTTCCGAAATATT 59.230 45.455 0.00 0.00 0.00 1.28
126 127 3.199289 ACTCCCTCCGTTCCGAAATATTT 59.801 43.478 0.00 0.00 0.00 1.40
127 128 3.537580 TCCCTCCGTTCCGAAATATTTG 58.462 45.455 5.17 0.00 0.00 2.32
128 129 3.054948 TCCCTCCGTTCCGAAATATTTGT 60.055 43.478 5.17 0.00 0.00 2.83
129 130 3.311596 CCCTCCGTTCCGAAATATTTGTC 59.688 47.826 5.17 0.00 0.00 3.18
130 131 4.189231 CCTCCGTTCCGAAATATTTGTCT 58.811 43.478 5.17 0.00 0.00 3.41
131 132 4.634443 CCTCCGTTCCGAAATATTTGTCTT 59.366 41.667 5.17 0.00 0.00 3.01
132 133 5.123344 CCTCCGTTCCGAAATATTTGTCTTT 59.877 40.000 5.17 0.00 0.00 2.52
133 134 6.173191 TCCGTTCCGAAATATTTGTCTTTC 57.827 37.500 5.17 0.00 0.00 2.62
134 135 5.935789 TCCGTTCCGAAATATTTGTCTTTCT 59.064 36.000 5.17 0.00 30.80 2.52
135 136 7.098477 TCCGTTCCGAAATATTTGTCTTTCTA 58.902 34.615 5.17 0.00 30.80 2.10
136 137 7.277098 TCCGTTCCGAAATATTTGTCTTTCTAG 59.723 37.037 5.17 0.00 30.80 2.43
137 138 7.277098 CCGTTCCGAAATATTTGTCTTTCTAGA 59.723 37.037 5.17 0.00 30.80 2.43
138 139 8.321716 CGTTCCGAAATATTTGTCTTTCTAGAG 58.678 37.037 5.17 0.00 30.80 2.43
139 140 9.367444 GTTCCGAAATATTTGTCTTTCTAGAGA 57.633 33.333 5.17 0.00 30.80 3.10
151 152 9.645059 TTGTCTTTCTAGAGATATCAACAAGTG 57.355 33.333 5.32 0.00 0.00 3.16
152 153 9.025041 TGTCTTTCTAGAGATATCAACAAGTGA 57.975 33.333 5.32 0.00 41.67 3.41
153 154 9.296400 GTCTTTCTAGAGATATCAACAAGTGAC 57.704 37.037 5.32 1.29 39.72 3.67
154 155 9.249053 TCTTTCTAGAGATATCAACAAGTGACT 57.751 33.333 5.32 0.00 39.72 3.41
157 158 8.144155 TCTAGAGATATCAACAAGTGACTACG 57.856 38.462 5.32 0.00 39.72 3.51
158 159 6.761099 AGAGATATCAACAAGTGACTACGT 57.239 37.500 5.32 0.00 39.72 3.57
159 160 7.860918 AGAGATATCAACAAGTGACTACGTA 57.139 36.000 5.32 0.00 39.72 3.57
160 161 7.695820 AGAGATATCAACAAGTGACTACGTAC 58.304 38.462 5.32 0.00 39.72 3.67
161 162 6.484540 AGATATCAACAAGTGACTACGTACG 58.515 40.000 15.01 15.01 39.72 3.67
162 163 3.272439 TCAACAAGTGACTACGTACGG 57.728 47.619 21.06 5.00 0.00 4.02
163 164 2.877786 TCAACAAGTGACTACGTACGGA 59.122 45.455 21.06 10.81 0.00 4.69
164 165 3.058708 TCAACAAGTGACTACGTACGGAG 60.059 47.826 25.90 25.90 0.00 4.63
165 166 1.198637 ACAAGTGACTACGTACGGAGC 59.801 52.381 27.33 19.29 0.00 4.70
166 167 1.198408 CAAGTGACTACGTACGGAGCA 59.802 52.381 27.33 21.55 0.00 4.26
167 168 1.527034 AGTGACTACGTACGGAGCAA 58.473 50.000 27.33 12.96 0.00 3.91
168 169 1.881973 AGTGACTACGTACGGAGCAAA 59.118 47.619 27.33 10.27 0.00 3.68
169 170 2.294233 AGTGACTACGTACGGAGCAAAA 59.706 45.455 27.33 7.64 0.00 2.44
170 171 3.057033 AGTGACTACGTACGGAGCAAAAT 60.057 43.478 27.33 7.40 0.00 1.82
171 172 3.060363 GTGACTACGTACGGAGCAAAATG 59.940 47.826 27.33 3.03 0.00 2.32
172 173 3.057386 TGACTACGTACGGAGCAAAATGA 60.057 43.478 27.33 0.00 0.00 2.57
173 174 3.916761 ACTACGTACGGAGCAAAATGAA 58.083 40.909 27.33 0.00 0.00 2.57
174 175 4.501071 ACTACGTACGGAGCAAAATGAAT 58.499 39.130 27.33 1.15 0.00 2.57
175 176 3.740044 ACGTACGGAGCAAAATGAATG 57.260 42.857 21.06 0.00 0.00 2.67
176 177 3.331150 ACGTACGGAGCAAAATGAATGA 58.669 40.909 21.06 0.00 0.00 2.57
177 178 3.749088 ACGTACGGAGCAAAATGAATGAA 59.251 39.130 21.06 0.00 0.00 2.57
178 179 4.394920 ACGTACGGAGCAAAATGAATGAAT 59.605 37.500 21.06 0.00 0.00 2.57
179 180 4.963953 CGTACGGAGCAAAATGAATGAATC 59.036 41.667 7.57 0.00 0.00 2.52
180 181 5.220662 CGTACGGAGCAAAATGAATGAATCT 60.221 40.000 7.57 0.00 0.00 2.40
181 182 6.019075 CGTACGGAGCAAAATGAATGAATCTA 60.019 38.462 7.57 0.00 0.00 1.98
182 183 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
183 184 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
184 185 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
185 186 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
186 187 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
187 188 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
188 189 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
189 190 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
222 223 4.438148 CATACATCCGTATGTTGTGTCCA 58.562 43.478 0.00 0.00 46.70 4.02
223 224 3.627395 ACATCCGTATGTTGTGTCCAT 57.373 42.857 0.00 0.00 44.07 3.41
224 225 3.950397 ACATCCGTATGTTGTGTCCATT 58.050 40.909 0.00 0.00 44.07 3.16
225 226 4.331968 ACATCCGTATGTTGTGTCCATTT 58.668 39.130 0.00 0.00 44.07 2.32
226 227 4.155826 ACATCCGTATGTTGTGTCCATTTG 59.844 41.667 0.00 0.00 44.07 2.32
227 228 4.009370 TCCGTATGTTGTGTCCATTTGA 57.991 40.909 0.00 0.00 0.00 2.69
228 229 4.390264 TCCGTATGTTGTGTCCATTTGAA 58.610 39.130 0.00 0.00 0.00 2.69
229 230 4.822350 TCCGTATGTTGTGTCCATTTGAAA 59.178 37.500 0.00 0.00 0.00 2.69
230 231 5.475220 TCCGTATGTTGTGTCCATTTGAAAT 59.525 36.000 0.00 0.00 0.00 2.17
231 232 5.572511 CCGTATGTTGTGTCCATTTGAAATG 59.427 40.000 10.84 10.84 0.00 2.32
232 233 5.060816 CGTATGTTGTGTCCATTTGAAATGC 59.939 40.000 12.26 0.87 0.00 3.56
233 234 3.726607 TGTTGTGTCCATTTGAAATGCC 58.273 40.909 12.26 5.75 0.00 4.40
234 235 3.387374 TGTTGTGTCCATTTGAAATGCCT 59.613 39.130 12.26 0.00 0.00 4.75
235 236 4.586421 TGTTGTGTCCATTTGAAATGCCTA 59.414 37.500 12.26 0.00 0.00 3.93
236 237 5.163513 GTTGTGTCCATTTGAAATGCCTAG 58.836 41.667 12.26 0.00 0.00 3.02
237 238 4.661222 TGTGTCCATTTGAAATGCCTAGA 58.339 39.130 12.26 1.83 0.00 2.43
238 239 5.076182 TGTGTCCATTTGAAATGCCTAGAA 58.924 37.500 12.26 0.00 0.00 2.10
239 240 5.538053 TGTGTCCATTTGAAATGCCTAGAAA 59.462 36.000 12.26 0.00 0.00 2.52
240 241 6.095377 GTGTCCATTTGAAATGCCTAGAAAG 58.905 40.000 12.26 0.00 0.00 2.62
241 242 6.009589 TGTCCATTTGAAATGCCTAGAAAGA 58.990 36.000 12.26 0.00 0.00 2.52
242 243 6.071952 TGTCCATTTGAAATGCCTAGAAAGAC 60.072 38.462 12.26 11.27 0.00 3.01
243 244 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
244 245 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
245 246 7.015098 TCCATTTGAAATGCCTAGAAAGACAAA 59.985 33.333 12.26 0.00 0.00 2.83
246 247 7.820872 CCATTTGAAATGCCTAGAAAGACAAAT 59.179 33.333 12.26 0.00 36.38 2.32
247 248 9.859427 CATTTGAAATGCCTAGAAAGACAAATA 57.141 29.630 4.82 0.00 34.96 1.40
251 252 9.859427 TGAAATGCCTAGAAAGACAAATATTTG 57.141 29.630 23.60 23.60 43.62 2.32
254 255 9.466497 AATGCCTAGAAAGACAAATATTTGAGA 57.534 29.630 30.18 9.26 40.55 3.27
255 256 8.862325 TGCCTAGAAAGACAAATATTTGAGAA 57.138 30.769 30.18 10.27 40.55 2.87
256 257 8.730680 TGCCTAGAAAGACAAATATTTGAGAAC 58.269 33.333 30.18 18.28 40.55 3.01
257 258 8.730680 GCCTAGAAAGACAAATATTTGAGAACA 58.269 33.333 30.18 10.85 40.55 3.18
261 262 9.007901 AGAAAGACAAATATTTGAGAACAGAGG 57.992 33.333 30.18 4.51 40.55 3.69
262 263 7.693969 AAGACAAATATTTGAGAACAGAGGG 57.306 36.000 30.18 4.03 40.55 4.30
263 264 7.020827 AGACAAATATTTGAGAACAGAGGGA 57.979 36.000 30.18 0.00 40.55 4.20
264 265 7.108847 AGACAAATATTTGAGAACAGAGGGAG 58.891 38.462 30.18 3.44 40.55 4.30
265 266 6.784031 ACAAATATTTGAGAACAGAGGGAGT 58.216 36.000 30.18 4.10 40.55 3.85
266 267 7.918076 ACAAATATTTGAGAACAGAGGGAGTA 58.082 34.615 30.18 0.00 40.55 2.59
267 268 8.043710 ACAAATATTTGAGAACAGAGGGAGTAG 58.956 37.037 30.18 2.18 40.55 2.57
268 269 7.741554 AATATTTGAGAACAGAGGGAGTAGT 57.258 36.000 0.00 0.00 0.00 2.73
269 270 7.741554 ATATTTGAGAACAGAGGGAGTAGTT 57.258 36.000 0.00 0.00 0.00 2.24
270 271 8.840200 ATATTTGAGAACAGAGGGAGTAGTTA 57.160 34.615 0.00 0.00 0.00 2.24
271 272 6.591750 TTTGAGAACAGAGGGAGTAGTTAG 57.408 41.667 0.00 0.00 0.00 2.34
272 273 4.017808 TGAGAACAGAGGGAGTAGTTAGC 58.982 47.826 0.00 0.00 0.00 3.09
273 274 4.017808 GAGAACAGAGGGAGTAGTTAGCA 58.982 47.826 0.00 0.00 0.00 3.49
274 275 4.417437 AGAACAGAGGGAGTAGTTAGCAA 58.583 43.478 0.00 0.00 0.00 3.91
275 276 5.026790 AGAACAGAGGGAGTAGTTAGCAAT 58.973 41.667 0.00 0.00 0.00 3.56
276 277 5.485708 AGAACAGAGGGAGTAGTTAGCAATT 59.514 40.000 0.00 0.00 0.00 2.32
277 278 5.763876 ACAGAGGGAGTAGTTAGCAATTT 57.236 39.130 0.00 0.00 0.00 1.82
278 279 6.128138 ACAGAGGGAGTAGTTAGCAATTTT 57.872 37.500 0.00 0.00 0.00 1.82
279 280 6.543735 ACAGAGGGAGTAGTTAGCAATTTTT 58.456 36.000 0.00 0.00 0.00 1.94
304 305 9.842775 TTTCATGATCTAGATGAAAATAGTGCT 57.157 29.630 10.74 0.00 43.53 4.40
305 306 9.842775 TTCATGATCTAGATGAAAATAGTGCTT 57.157 29.630 10.74 0.00 36.98 3.91
353 354 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
354 355 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
355 356 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
356 357 1.308069 TTTCGGACGGAGGGAGTACG 61.308 60.000 0.00 0.00 46.50 3.67
358 359 3.507290 GGACGGAGGGAGTACGAC 58.493 66.667 0.00 0.00 0.00 4.34
359 360 1.377725 GGACGGAGGGAGTACGACA 60.378 63.158 0.00 0.00 0.00 4.35
360 361 0.750911 GGACGGAGGGAGTACGACAT 60.751 60.000 0.00 0.00 0.00 3.06
361 362 1.475751 GGACGGAGGGAGTACGACATA 60.476 57.143 0.00 0.00 0.00 2.29
362 363 2.292267 GACGGAGGGAGTACGACATAA 58.708 52.381 0.00 0.00 0.00 1.90
363 364 2.684881 GACGGAGGGAGTACGACATAAA 59.315 50.000 0.00 0.00 0.00 1.40
364 365 3.294214 ACGGAGGGAGTACGACATAAAT 58.706 45.455 0.00 0.00 0.00 1.40
365 366 4.464008 ACGGAGGGAGTACGACATAAATA 58.536 43.478 0.00 0.00 0.00 1.40
366 367 5.075493 ACGGAGGGAGTACGACATAAATAT 58.925 41.667 0.00 0.00 0.00 1.28
367 368 6.240894 ACGGAGGGAGTACGACATAAATATA 58.759 40.000 0.00 0.00 0.00 0.86
368 369 6.716628 ACGGAGGGAGTACGACATAAATATAA 59.283 38.462 0.00 0.00 0.00 0.98
369 370 7.231317 ACGGAGGGAGTACGACATAAATATAAA 59.769 37.037 0.00 0.00 0.00 1.40
370 371 8.248945 CGGAGGGAGTACGACATAAATATAAAT 58.751 37.037 0.00 0.00 0.00 1.40
371 372 9.367444 GGAGGGAGTACGACATAAATATAAATG 57.633 37.037 0.00 0.00 0.00 2.32
372 373 9.367444 GAGGGAGTACGACATAAATATAAATGG 57.633 37.037 0.00 0.00 0.00 3.16
373 374 9.096823 AGGGAGTACGACATAAATATAAATGGA 57.903 33.333 0.00 0.00 0.00 3.41
374 375 9.715121 GGGAGTACGACATAAATATAAATGGAA 57.285 33.333 0.00 0.00 0.00 3.53
377 378 8.706035 AGTACGACATAAATATAAATGGAACGC 58.294 33.333 0.00 0.00 0.00 4.84
378 379 7.724305 ACGACATAAATATAAATGGAACGCT 57.276 32.000 0.00 0.00 0.00 5.07
379 380 7.793902 ACGACATAAATATAAATGGAACGCTC 58.206 34.615 0.00 0.00 0.00 5.03
380 381 7.439955 ACGACATAAATATAAATGGAACGCTCA 59.560 33.333 0.00 0.00 0.00 4.26
381 382 7.740346 CGACATAAATATAAATGGAACGCTCAC 59.260 37.037 3.12 0.00 0.00 3.51
382 383 8.445275 ACATAAATATAAATGGAACGCTCACA 57.555 30.769 3.12 0.00 0.00 3.58
383 384 8.898761 ACATAAATATAAATGGAACGCTCACAA 58.101 29.630 3.12 0.00 0.00 3.33
384 385 9.729023 CATAAATATAAATGGAACGCTCACAAA 57.271 29.630 0.00 0.00 0.00 2.83
385 386 9.950680 ATAAATATAAATGGAACGCTCACAAAG 57.049 29.630 0.00 0.00 0.00 2.77
386 387 7.391148 AATATAAATGGAACGCTCACAAAGT 57.609 32.000 0.00 0.00 0.00 2.66
387 388 3.626028 AAATGGAACGCTCACAAAGTC 57.374 42.857 0.00 0.00 0.00 3.01
388 389 2.254546 ATGGAACGCTCACAAAGTCA 57.745 45.000 0.00 0.00 0.00 3.41
389 390 1.295792 TGGAACGCTCACAAAGTCAC 58.704 50.000 0.00 0.00 0.00 3.67
390 391 1.295792 GGAACGCTCACAAAGTCACA 58.704 50.000 0.00 0.00 0.00 3.58
391 392 1.668751 GGAACGCTCACAAAGTCACAA 59.331 47.619 0.00 0.00 0.00 3.33
392 393 2.286418 GGAACGCTCACAAAGTCACAAG 60.286 50.000 0.00 0.00 0.00 3.16
393 394 0.657840 ACGCTCACAAAGTCACAAGC 59.342 50.000 0.00 0.00 0.00 4.01
394 395 0.383491 CGCTCACAAAGTCACAAGCG 60.383 55.000 0.00 0.00 45.24 4.68
395 396 0.657840 GCTCACAAAGTCACAAGCGT 59.342 50.000 0.00 0.00 0.00 5.07
396 397 1.595489 GCTCACAAAGTCACAAGCGTG 60.595 52.381 0.00 0.00 45.08 5.34
432 433 6.439487 TCAAGAATACTTCATCCTCCTCTCT 58.561 40.000 0.00 0.00 33.70 3.10
444 445 1.034838 TCCTCTCTTCTGCTCGCTCC 61.035 60.000 0.00 0.00 0.00 4.70
445 446 1.437160 CTCTCTTCTGCTCGCTCCC 59.563 63.158 0.00 0.00 0.00 4.30
446 447 2.015227 CTCTCTTCTGCTCGCTCCCC 62.015 65.000 0.00 0.00 0.00 4.81
447 448 2.038007 TCTTCTGCTCGCTCCCCT 59.962 61.111 0.00 0.00 0.00 4.79
448 449 2.186384 CTTCTGCTCGCTCCCCTG 59.814 66.667 0.00 0.00 0.00 4.45
449 450 4.087892 TTCTGCTCGCTCCCCTGC 62.088 66.667 0.00 0.00 0.00 4.85
463 464 1.153469 CCTGCCTCGCTCCTCTTTC 60.153 63.158 0.00 0.00 0.00 2.62
468 469 2.036731 TCGCTCCTCTTTCCGGGA 59.963 61.111 0.00 0.00 0.00 5.14
576 578 1.068333 CCACACACATGCTGCCTAAAC 60.068 52.381 0.00 0.00 0.00 2.01
597 599 0.179073 CATCCATCGCGGTCTTTCCT 60.179 55.000 6.13 0.00 35.57 3.36
598 600 0.541863 ATCCATCGCGGTCTTTCCTT 59.458 50.000 6.13 0.00 35.57 3.36
612 614 3.893200 TCTTTCCTTCTGTCACGTAGGAA 59.107 43.478 10.51 10.51 43.21 3.36
631 633 5.140077 GGAAATTCCTGTTTCGATACGAC 57.860 43.478 4.46 0.00 38.64 4.34
642 920 7.319615 CCTGTTTCGATACGACTTAAAAACAAC 59.680 37.037 1.52 0.00 34.89 3.32
643 921 7.682824 TGTTTCGATACGACTTAAAAACAACA 58.317 30.769 1.52 0.00 34.89 3.33
690 968 1.821216 TTCGGGATTTGAAGGTGAGC 58.179 50.000 0.00 0.00 0.00 4.26
699 977 4.647424 TTTGAAGGTGAGCATTCGTTTT 57.353 36.364 0.00 0.00 38.14 2.43
755 1033 6.491714 ACCATACTTCATGCTTAGAGTGAT 57.508 37.500 0.00 0.00 32.84 3.06
765 1043 2.445316 CTTAGAGTGATGTCGCGTGAG 58.555 52.381 5.77 0.00 0.00 3.51
807 1085 0.531532 CGTGAAGAGCCCTAGCCATG 60.532 60.000 0.00 0.00 41.25 3.66
836 1114 5.527951 AGTCGGCCATAGTATGAGTATATCG 59.472 44.000 11.91 4.98 0.00 2.92
921 1236 0.392863 TGCACATGGGACTGGATTCG 60.393 55.000 0.00 0.00 0.00 3.34
932 1247 1.340017 ACTGGATTCGGTGGATGTTGG 60.340 52.381 0.00 0.00 0.00 3.77
936 1251 3.201045 TGGATTCGGTGGATGTTGGATTA 59.799 43.478 0.00 0.00 0.00 1.75
1003 1333 4.436852 CCGTGTTCCCTTTCGTATTTGATG 60.437 45.833 0.00 0.00 0.00 3.07
1004 1334 4.390603 CGTGTTCCCTTTCGTATTTGATGA 59.609 41.667 0.00 0.00 0.00 2.92
1005 1335 5.064707 CGTGTTCCCTTTCGTATTTGATGAT 59.935 40.000 0.00 0.00 0.00 2.45
1018 1348 8.889717 TCGTATTTGATGATTTAAGAAGTTCCC 58.110 33.333 0.00 0.00 0.00 3.97
1019 1349 7.850982 CGTATTTGATGATTTAAGAAGTTCCCG 59.149 37.037 0.00 0.00 0.00 5.14
1060 1393 4.595538 TCACCAACCGCGTCGCTT 62.596 61.111 16.36 0.09 0.00 4.68
1292 1961 2.979814 TATGCTTGTATCCTGCGTGT 57.020 45.000 0.00 0.00 0.00 4.49
1426 2097 2.101415 TCGCATATGTCCTGACTTCTGG 59.899 50.000 4.29 0.00 36.43 3.86
1432 2103 1.552337 TGTCCTGACTTCTGGCAGATC 59.448 52.381 19.50 14.39 34.06 2.75
1484 2155 1.541588 CTTCCTTGGGCTAAGCACAAC 59.458 52.381 4.89 0.00 45.26 3.32
1630 2466 4.271049 ACGTTAGATTGATGATGAAAGCCG 59.729 41.667 0.00 0.00 0.00 5.52
1665 2501 3.373748 TCATGCGTATTGCTTTACCACTG 59.626 43.478 0.00 0.00 46.63 3.66
1688 2532 5.221481 TGTTGGATTTGTAGGTCGTCTGTAA 60.221 40.000 0.00 0.00 0.00 2.41
1771 2621 8.279970 TGAACTGAACAATAATATCCCTGTTG 57.720 34.615 2.08 0.00 32.31 3.33
1911 2768 1.919600 GCAGGCCCTCTGTTCCATCT 61.920 60.000 0.00 0.00 45.08 2.90
1912 2769 1.500474 CAGGCCCTCTGTTCCATCTA 58.500 55.000 0.00 0.00 38.64 1.98
1913 2770 2.053244 CAGGCCCTCTGTTCCATCTAT 58.947 52.381 0.00 0.00 38.64 1.98
1914 2771 2.053244 AGGCCCTCTGTTCCATCTATG 58.947 52.381 0.00 0.00 0.00 2.23
1915 2772 2.050144 GGCCCTCTGTTCCATCTATGA 58.950 52.381 0.00 0.00 0.00 2.15
1916 2773 2.641815 GGCCCTCTGTTCCATCTATGAT 59.358 50.000 0.00 0.00 0.00 2.45
1917 2774 3.307339 GGCCCTCTGTTCCATCTATGATC 60.307 52.174 0.00 0.00 0.00 2.92
1973 2834 6.445357 TTCAGTTTCAGTTTTTCTGTACCC 57.555 37.500 0.00 0.00 43.97 3.69
1984 2845 4.634012 TTTCTGTACCCTTGCAGTGTAT 57.366 40.909 0.00 0.00 36.83 2.29
2065 3506 9.710900 GTTGAAAGTGGAATAAAAGATGGAATT 57.289 29.630 0.00 0.00 0.00 2.17
2172 3618 2.996621 CACCAAAAAGCTAGGAGTCTCG 59.003 50.000 0.00 0.00 0.00 4.04
2173 3619 2.897969 ACCAAAAAGCTAGGAGTCTCGA 59.102 45.455 0.00 0.00 0.00 4.04
2213 3668 2.189342 GCAAGCACGCTTTACACAAAA 58.811 42.857 0.44 0.00 33.42 2.44
2260 3715 6.688385 CCTGTTTACATGCTGAATATCAAACG 59.312 38.462 0.00 0.00 0.00 3.60
2325 3780 4.406943 GAGCCACAATTGAACGAGAATTC 58.593 43.478 13.59 0.00 0.00 2.17
2334 3789 2.490509 TGAACGAGAATTCTGGCGAGTA 59.509 45.455 19.87 5.74 0.00 2.59
2373 3828 5.178096 TCTCCAAGCAATCAGTTTCCATA 57.822 39.130 0.00 0.00 0.00 2.74
2374 3829 4.943705 TCTCCAAGCAATCAGTTTCCATAC 59.056 41.667 0.00 0.00 0.00 2.39
2376 3831 3.763360 CCAAGCAATCAGTTTCCATACCA 59.237 43.478 0.00 0.00 0.00 3.25
2377 3832 4.380867 CCAAGCAATCAGTTTCCATACCAC 60.381 45.833 0.00 0.00 0.00 4.16
2378 3833 3.009723 AGCAATCAGTTTCCATACCACG 58.990 45.455 0.00 0.00 0.00 4.94
2379 3834 2.747446 GCAATCAGTTTCCATACCACGT 59.253 45.455 0.00 0.00 0.00 4.49
2380 3835 3.426159 GCAATCAGTTTCCATACCACGTG 60.426 47.826 9.08 9.08 0.00 4.49
2502 3959 2.065906 CTAGGAGCGCCGAAGAGGAC 62.066 65.000 2.29 0.00 45.00 3.85
2645 4102 1.006758 TCGTGGTAGATGAAGGAGGGT 59.993 52.381 0.00 0.00 0.00 4.34
2679 4136 2.499685 GCCCTGATCGTAGCCGTT 59.500 61.111 0.00 0.00 35.01 4.44
2770 4228 2.607668 CTTGGCGCGGTCATCGTCTA 62.608 60.000 8.83 0.00 41.72 2.59
2792 4250 3.417069 AAACCGAGGATCACATGTGAA 57.583 42.857 31.00 15.50 43.58 3.18
2832 4291 3.643320 TGGATGAAGACGAGGCAATCTAT 59.357 43.478 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.065854 GGCTACAGCATGGACTGACTT 60.066 52.381 7.27 0.00 43.62 3.01
6 7 0.250234 TGGCTACAGCATGGACTGAC 59.750 55.000 7.27 0.00 43.62 3.51
8 9 2.048444 ATTGGCTACAGCATGGACTG 57.952 50.000 3.24 0.00 43.62 3.51
10 11 3.874392 AAAATTGGCTACAGCATGGAC 57.126 42.857 3.24 0.00 43.62 4.02
28 29 6.276832 ACTAGCACTATGTAGTCCGAAAAA 57.723 37.500 0.00 0.00 33.46 1.94
29 30 5.909621 ACTAGCACTATGTAGTCCGAAAA 57.090 39.130 0.00 0.00 33.46 2.29
30 31 5.416639 TCAACTAGCACTATGTAGTCCGAAA 59.583 40.000 0.00 0.00 33.46 3.46
31 32 4.945543 TCAACTAGCACTATGTAGTCCGAA 59.054 41.667 0.00 0.00 33.46 4.30
32 33 4.520179 TCAACTAGCACTATGTAGTCCGA 58.480 43.478 0.00 0.00 33.46 4.55
33 34 4.895224 TCAACTAGCACTATGTAGTCCG 57.105 45.455 0.00 0.00 33.46 4.79
34 35 6.642707 AGATCAACTAGCACTATGTAGTCC 57.357 41.667 0.00 0.00 33.46 3.85
35 36 8.610248 TCTAGATCAACTAGCACTATGTAGTC 57.390 38.462 0.00 0.00 45.78 2.59
36 37 8.982091 TTCTAGATCAACTAGCACTATGTAGT 57.018 34.615 0.00 0.00 45.78 2.73
37 38 9.062524 ACTTCTAGATCAACTAGCACTATGTAG 57.937 37.037 0.00 0.00 45.78 2.74
38 39 8.982091 ACTTCTAGATCAACTAGCACTATGTA 57.018 34.615 0.00 0.00 45.78 2.29
39 40 7.889873 ACTTCTAGATCAACTAGCACTATGT 57.110 36.000 0.00 0.00 45.78 2.29
40 41 9.062524 AGTACTTCTAGATCAACTAGCACTATG 57.937 37.037 0.00 0.00 45.78 2.23
42 43 9.767228 CTAGTACTTCTAGATCAACTAGCACTA 57.233 37.037 16.64 9.75 46.53 2.74
43 44 8.269317 ACTAGTACTTCTAGATCAACTAGCACT 58.731 37.037 23.05 13.35 46.53 4.40
44 45 8.441312 ACTAGTACTTCTAGATCAACTAGCAC 57.559 38.462 23.05 8.27 46.53 4.40
45 46 8.894731 CAACTAGTACTTCTAGATCAACTAGCA 58.105 37.037 23.05 0.00 46.53 3.49
46 47 9.111613 TCAACTAGTACTTCTAGATCAACTAGC 57.888 37.037 23.05 2.15 46.53 3.42
49 50 9.914834 AGATCAACTAGTACTTCTAGATCAACT 57.085 33.333 20.51 0.00 46.53 3.16
80 81 9.257428 AGTAGTACCTTTTTCTAGATAAGCACT 57.743 33.333 16.29 16.29 0.00 4.40
81 82 9.518906 GAGTAGTACCTTTTTCTAGATAAGCAC 57.481 37.037 0.00 2.50 0.00 4.40
82 83 8.693625 GGAGTAGTACCTTTTTCTAGATAAGCA 58.306 37.037 0.00 0.00 0.00 3.91
83 84 8.143193 GGGAGTAGTACCTTTTTCTAGATAAGC 58.857 40.741 0.00 0.00 0.00 3.09
84 85 9.423964 AGGGAGTAGTACCTTTTTCTAGATAAG 57.576 37.037 0.00 0.73 31.68 1.73
85 86 9.418839 GAGGGAGTAGTACCTTTTTCTAGATAA 57.581 37.037 1.79 0.00 37.18 1.75
86 87 8.003629 GGAGGGAGTAGTACCTTTTTCTAGATA 58.996 40.741 1.79 0.00 37.18 1.98
87 88 6.840181 GGAGGGAGTAGTACCTTTTTCTAGAT 59.160 42.308 1.79 0.00 37.18 1.98
88 89 6.193504 GGAGGGAGTAGTACCTTTTTCTAGA 58.806 44.000 1.79 0.00 37.18 2.43
89 90 5.067544 CGGAGGGAGTAGTACCTTTTTCTAG 59.932 48.000 1.79 0.00 37.18 2.43
90 91 4.952335 CGGAGGGAGTAGTACCTTTTTCTA 59.048 45.833 1.79 0.00 37.18 2.10
91 92 3.768215 CGGAGGGAGTAGTACCTTTTTCT 59.232 47.826 1.79 0.00 37.18 2.52
92 93 3.513119 ACGGAGGGAGTAGTACCTTTTTC 59.487 47.826 1.79 0.00 37.18 2.29
93 94 3.514539 ACGGAGGGAGTAGTACCTTTTT 58.485 45.455 1.79 0.00 37.18 1.94
94 95 3.181393 ACGGAGGGAGTAGTACCTTTT 57.819 47.619 1.79 0.00 37.18 2.27
95 96 2.915657 ACGGAGGGAGTAGTACCTTT 57.084 50.000 1.79 0.00 37.18 3.11
96 97 2.622714 GGAACGGAGGGAGTAGTACCTT 60.623 54.545 1.79 0.00 37.18 3.50
97 98 1.064091 GGAACGGAGGGAGTAGTACCT 60.064 57.143 0.00 0.00 40.54 3.08
98 99 1.397672 GGAACGGAGGGAGTAGTACC 58.602 60.000 0.00 0.00 0.00 3.34
113 114 9.367444 TCTCTAGAAAGACAAATATTTCGGAAC 57.633 33.333 0.00 0.00 40.33 3.62
125 126 9.645059 CACTTGTTGATATCTCTAGAAAGACAA 57.355 33.333 3.98 0.00 0.00 3.18
126 127 9.025041 TCACTTGTTGATATCTCTAGAAAGACA 57.975 33.333 3.98 0.00 0.00 3.41
127 128 9.296400 GTCACTTGTTGATATCTCTAGAAAGAC 57.704 37.037 3.98 9.93 36.32 3.01
128 129 9.249053 AGTCACTTGTTGATATCTCTAGAAAGA 57.751 33.333 3.98 0.00 36.32 2.52
131 132 8.613482 CGTAGTCACTTGTTGATATCTCTAGAA 58.387 37.037 3.98 0.00 36.32 2.10
132 133 7.769507 ACGTAGTCACTTGTTGATATCTCTAGA 59.230 37.037 3.98 0.00 29.74 2.43
133 134 7.921787 ACGTAGTCACTTGTTGATATCTCTAG 58.078 38.462 3.98 6.38 29.74 2.43
134 135 7.860918 ACGTAGTCACTTGTTGATATCTCTA 57.139 36.000 3.98 0.00 29.74 2.43
135 136 6.761099 ACGTAGTCACTTGTTGATATCTCT 57.239 37.500 3.98 0.00 29.74 3.10
136 137 6.628065 CGTACGTAGTCACTTGTTGATATCTC 59.372 42.308 7.22 0.00 43.93 2.75
137 138 6.457934 CCGTACGTAGTCACTTGTTGATATCT 60.458 42.308 15.21 0.00 43.93 1.98
138 139 5.680229 CCGTACGTAGTCACTTGTTGATATC 59.320 44.000 15.21 0.00 43.93 1.63
139 140 5.355071 TCCGTACGTAGTCACTTGTTGATAT 59.645 40.000 15.21 0.00 43.93 1.63
140 141 4.694982 TCCGTACGTAGTCACTTGTTGATA 59.305 41.667 15.21 0.00 43.93 2.15
141 142 3.503363 TCCGTACGTAGTCACTTGTTGAT 59.497 43.478 15.21 0.00 43.93 2.57
142 143 2.877786 TCCGTACGTAGTCACTTGTTGA 59.122 45.455 15.21 0.00 43.93 3.18
143 144 3.231965 CTCCGTACGTAGTCACTTGTTG 58.768 50.000 15.21 0.00 43.93 3.33
144 145 2.351157 GCTCCGTACGTAGTCACTTGTT 60.351 50.000 15.21 0.00 43.93 2.83
145 146 1.198637 GCTCCGTACGTAGTCACTTGT 59.801 52.381 15.21 0.00 43.93 3.16
146 147 1.198408 TGCTCCGTACGTAGTCACTTG 59.802 52.381 15.21 0.00 43.93 3.16
147 148 1.527034 TGCTCCGTACGTAGTCACTT 58.473 50.000 15.21 0.00 43.93 3.16
148 149 1.527034 TTGCTCCGTACGTAGTCACT 58.473 50.000 15.21 0.00 43.93 3.41
149 150 2.336554 TTTGCTCCGTACGTAGTCAC 57.663 50.000 15.21 0.00 43.93 3.67
150 151 3.057386 TCATTTTGCTCCGTACGTAGTCA 60.057 43.478 15.21 7.62 43.93 3.41
151 152 3.504863 TCATTTTGCTCCGTACGTAGTC 58.495 45.455 15.21 5.03 43.93 2.59
153 154 4.565166 TCATTCATTTTGCTCCGTACGTAG 59.435 41.667 15.21 9.26 0.00 3.51
154 155 4.496360 TCATTCATTTTGCTCCGTACGTA 58.504 39.130 15.21 0.00 0.00 3.57
155 156 3.331150 TCATTCATTTTGCTCCGTACGT 58.669 40.909 15.21 0.00 0.00 3.57
156 157 4.335082 TTCATTCATTTTGCTCCGTACG 57.665 40.909 8.69 8.69 0.00 3.67
157 158 6.124088 AGATTCATTCATTTTGCTCCGTAC 57.876 37.500 0.00 0.00 0.00 3.67
158 159 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
159 160 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
160 161 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
161 162 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
162 163 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
163 164 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
201 202 4.746535 TGGACACAACATACGGATGTAT 57.253 40.909 15.10 2.23 45.93 2.29
202 203 4.746535 ATGGACACAACATACGGATGTA 57.253 40.909 15.10 0.00 45.93 2.29
204 205 4.394610 TCAAATGGACACAACATACGGATG 59.605 41.667 5.94 5.94 39.16 3.51
205 206 4.584874 TCAAATGGACACAACATACGGAT 58.415 39.130 0.00 0.00 0.00 4.18
206 207 4.009370 TCAAATGGACACAACATACGGA 57.991 40.909 0.00 0.00 0.00 4.69
207 208 4.757799 TTCAAATGGACACAACATACGG 57.242 40.909 0.00 0.00 0.00 4.02
208 209 5.060816 GCATTTCAAATGGACACAACATACG 59.939 40.000 12.14 0.00 0.00 3.06
209 210 5.348451 GGCATTTCAAATGGACACAACATAC 59.652 40.000 12.14 0.00 0.00 2.39
210 211 5.245751 AGGCATTTCAAATGGACACAACATA 59.754 36.000 12.14 0.00 0.00 2.29
211 212 4.040706 AGGCATTTCAAATGGACACAACAT 59.959 37.500 12.14 0.00 0.00 2.71
212 213 3.387374 AGGCATTTCAAATGGACACAACA 59.613 39.130 12.14 0.00 0.00 3.33
213 214 3.993920 AGGCATTTCAAATGGACACAAC 58.006 40.909 12.14 0.00 0.00 3.32
214 215 5.076182 TCTAGGCATTTCAAATGGACACAA 58.924 37.500 12.14 0.00 0.00 3.33
215 216 4.661222 TCTAGGCATTTCAAATGGACACA 58.339 39.130 12.14 0.00 0.00 3.72
216 217 5.643379 TTCTAGGCATTTCAAATGGACAC 57.357 39.130 12.14 0.00 0.00 3.67
217 218 6.009589 TCTTTCTAGGCATTTCAAATGGACA 58.990 36.000 12.14 0.00 0.00 4.02
218 219 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
219 220 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
220 221 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
221 222 8.767478 ATTTGTCTTTCTAGGCATTTCAAATG 57.233 30.769 5.68 5.68 35.56 2.32
225 226 9.859427 CAAATATTTGTCTTTCTAGGCATTTCA 57.141 29.630 18.32 0.00 35.56 2.69
228 229 9.466497 TCTCAAATATTTGTCTTTCTAGGCATT 57.534 29.630 23.95 0.00 35.56 3.56
229 230 9.466497 TTCTCAAATATTTGTCTTTCTAGGCAT 57.534 29.630 23.95 0.00 35.56 4.40
230 231 8.730680 GTTCTCAAATATTTGTCTTTCTAGGCA 58.269 33.333 23.95 3.47 39.18 4.75
231 232 8.730680 TGTTCTCAAATATTTGTCTTTCTAGGC 58.269 33.333 23.95 11.35 39.18 3.93
235 236 9.007901 CCTCTGTTCTCAAATATTTGTCTTTCT 57.992 33.333 23.95 0.00 39.18 2.52
236 237 8.239998 CCCTCTGTTCTCAAATATTTGTCTTTC 58.760 37.037 23.95 13.88 39.18 2.62
237 238 7.944554 TCCCTCTGTTCTCAAATATTTGTCTTT 59.055 33.333 23.95 0.00 39.18 2.52
238 239 7.461749 TCCCTCTGTTCTCAAATATTTGTCTT 58.538 34.615 23.95 0.00 39.18 3.01
239 240 7.020827 TCCCTCTGTTCTCAAATATTTGTCT 57.979 36.000 23.95 0.00 39.18 3.41
240 241 6.881602 ACTCCCTCTGTTCTCAAATATTTGTC 59.118 38.462 23.95 14.69 39.18 3.18
241 242 6.784031 ACTCCCTCTGTTCTCAAATATTTGT 58.216 36.000 23.95 1.02 39.18 2.83
242 243 8.043710 ACTACTCCCTCTGTTCTCAAATATTTG 58.956 37.037 20.13 20.13 39.48 2.32
243 244 8.152023 ACTACTCCCTCTGTTCTCAAATATTT 57.848 34.615 0.00 0.00 0.00 1.40
244 245 7.741554 ACTACTCCCTCTGTTCTCAAATATT 57.258 36.000 0.00 0.00 0.00 1.28
245 246 7.741554 AACTACTCCCTCTGTTCTCAAATAT 57.258 36.000 0.00 0.00 0.00 1.28
246 247 7.147880 GCTAACTACTCCCTCTGTTCTCAAATA 60.148 40.741 0.00 0.00 0.00 1.40
247 248 6.351456 GCTAACTACTCCCTCTGTTCTCAAAT 60.351 42.308 0.00 0.00 0.00 2.32
248 249 5.047235 GCTAACTACTCCCTCTGTTCTCAAA 60.047 44.000 0.00 0.00 0.00 2.69
249 250 4.463186 GCTAACTACTCCCTCTGTTCTCAA 59.537 45.833 0.00 0.00 0.00 3.02
250 251 4.017808 GCTAACTACTCCCTCTGTTCTCA 58.982 47.826 0.00 0.00 0.00 3.27
251 252 4.017808 TGCTAACTACTCCCTCTGTTCTC 58.982 47.826 0.00 0.00 0.00 2.87
252 253 4.048970 TGCTAACTACTCCCTCTGTTCT 57.951 45.455 0.00 0.00 0.00 3.01
253 254 4.803098 TTGCTAACTACTCCCTCTGTTC 57.197 45.455 0.00 0.00 0.00 3.18
254 255 5.763876 AATTGCTAACTACTCCCTCTGTT 57.236 39.130 0.00 0.00 0.00 3.16
255 256 5.763876 AAATTGCTAACTACTCCCTCTGT 57.236 39.130 0.00 0.00 0.00 3.41
278 279 9.842775 AGCACTATTTTCATCTAGATCATGAAA 57.157 29.630 13.53 13.53 44.72 2.69
279 280 9.842775 AAGCACTATTTTCATCTAGATCATGAA 57.157 29.630 1.03 2.57 38.27 2.57
335 336 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
336 337 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
337 338 1.308069 CGTACTCCCTCCGTCCGAAA 61.308 60.000 0.00 0.00 0.00 3.46
338 339 1.746615 CGTACTCCCTCCGTCCGAA 60.747 63.158 0.00 0.00 0.00 4.30
339 340 2.124983 CGTACTCCCTCCGTCCGA 60.125 66.667 0.00 0.00 0.00 4.55
340 341 2.124983 TCGTACTCCCTCCGTCCG 60.125 66.667 0.00 0.00 0.00 4.79
341 342 0.750911 ATGTCGTACTCCCTCCGTCC 60.751 60.000 0.00 0.00 0.00 4.79
342 343 1.959042 TATGTCGTACTCCCTCCGTC 58.041 55.000 0.00 0.00 0.00 4.79
343 344 2.425143 TTATGTCGTACTCCCTCCGT 57.575 50.000 0.00 0.00 0.00 4.69
344 345 5.640189 ATATTTATGTCGTACTCCCTCCG 57.360 43.478 0.00 0.00 0.00 4.63
345 346 9.367444 CATTTATATTTATGTCGTACTCCCTCC 57.633 37.037 0.00 0.00 0.00 4.30
346 347 9.367444 CCATTTATATTTATGTCGTACTCCCTC 57.633 37.037 0.00 0.00 0.00 4.30
347 348 9.096823 TCCATTTATATTTATGTCGTACTCCCT 57.903 33.333 0.00 0.00 0.00 4.20
348 349 9.715121 TTCCATTTATATTTATGTCGTACTCCC 57.285 33.333 0.00 0.00 0.00 4.30
351 352 8.706035 GCGTTCCATTTATATTTATGTCGTACT 58.294 33.333 0.00 0.00 0.00 2.73
352 353 8.706035 AGCGTTCCATTTATATTTATGTCGTAC 58.294 33.333 0.00 0.00 0.00 3.67
353 354 8.821147 AGCGTTCCATTTATATTTATGTCGTA 57.179 30.769 0.00 0.00 0.00 3.43
354 355 7.439955 TGAGCGTTCCATTTATATTTATGTCGT 59.560 33.333 0.00 0.00 0.00 4.34
355 356 7.740346 GTGAGCGTTCCATTTATATTTATGTCG 59.260 37.037 0.00 0.00 0.00 4.35
356 357 8.556194 TGTGAGCGTTCCATTTATATTTATGTC 58.444 33.333 0.00 0.00 0.00 3.06
357 358 8.445275 TGTGAGCGTTCCATTTATATTTATGT 57.555 30.769 0.00 0.00 0.00 2.29
358 359 9.729023 TTTGTGAGCGTTCCATTTATATTTATG 57.271 29.630 0.00 0.00 0.00 1.90
359 360 9.950680 CTTTGTGAGCGTTCCATTTATATTTAT 57.049 29.630 0.00 0.00 0.00 1.40
360 361 8.952278 ACTTTGTGAGCGTTCCATTTATATTTA 58.048 29.630 0.00 0.00 0.00 1.40
361 362 7.826690 ACTTTGTGAGCGTTCCATTTATATTT 58.173 30.769 0.00 0.00 0.00 1.40
362 363 7.120579 TGACTTTGTGAGCGTTCCATTTATATT 59.879 33.333 0.00 0.00 0.00 1.28
363 364 6.597672 TGACTTTGTGAGCGTTCCATTTATAT 59.402 34.615 0.00 0.00 0.00 0.86
364 365 5.935206 TGACTTTGTGAGCGTTCCATTTATA 59.065 36.000 0.00 0.00 0.00 0.98
365 366 4.759693 TGACTTTGTGAGCGTTCCATTTAT 59.240 37.500 0.00 0.00 0.00 1.40
366 367 4.024387 GTGACTTTGTGAGCGTTCCATTTA 60.024 41.667 0.00 0.00 0.00 1.40
367 368 2.948979 TGACTTTGTGAGCGTTCCATTT 59.051 40.909 0.00 0.00 0.00 2.32
368 369 2.290641 GTGACTTTGTGAGCGTTCCATT 59.709 45.455 0.00 0.00 0.00 3.16
369 370 1.873591 GTGACTTTGTGAGCGTTCCAT 59.126 47.619 0.00 0.00 0.00 3.41
370 371 1.295792 GTGACTTTGTGAGCGTTCCA 58.704 50.000 0.00 0.00 0.00 3.53
371 372 1.295792 TGTGACTTTGTGAGCGTTCC 58.704 50.000 0.00 0.00 0.00 3.62
372 373 2.851008 GCTTGTGACTTTGTGAGCGTTC 60.851 50.000 0.00 0.00 0.00 3.95
373 374 1.064060 GCTTGTGACTTTGTGAGCGTT 59.936 47.619 0.00 0.00 0.00 4.84
374 375 0.657840 GCTTGTGACTTTGTGAGCGT 59.342 50.000 0.00 0.00 0.00 5.07
375 376 0.383491 CGCTTGTGACTTTGTGAGCG 60.383 55.000 1.05 1.05 45.32 5.03
376 377 0.657840 ACGCTTGTGACTTTGTGAGC 59.342 50.000 0.00 0.00 0.00 4.26
377 378 2.373735 CACGCTTGTGACTTTGTGAG 57.626 50.000 0.00 0.00 46.91 3.51
387 388 3.008240 CTCGCTGCTCACGCTTGTG 62.008 63.158 0.00 0.00 45.26 3.33
388 389 2.142357 TACTCGCTGCTCACGCTTGT 62.142 55.000 0.00 0.00 36.97 3.16
389 390 0.803768 ATACTCGCTGCTCACGCTTG 60.804 55.000 0.00 0.00 36.97 4.01
390 391 0.526524 GATACTCGCTGCTCACGCTT 60.527 55.000 0.00 0.00 36.97 4.68
391 392 1.064946 GATACTCGCTGCTCACGCT 59.935 57.895 0.00 0.00 36.97 5.07
392 393 0.802222 TTGATACTCGCTGCTCACGC 60.802 55.000 0.00 0.00 0.00 5.34
393 394 1.195347 CTTGATACTCGCTGCTCACG 58.805 55.000 0.00 0.00 0.00 4.35
394 395 2.568696 TCTTGATACTCGCTGCTCAC 57.431 50.000 0.00 0.00 0.00 3.51
395 396 3.808466 ATTCTTGATACTCGCTGCTCA 57.192 42.857 0.00 0.00 0.00 4.26
396 397 4.865776 AGTATTCTTGATACTCGCTGCTC 58.134 43.478 0.00 0.00 46.28 4.26
397 398 4.927978 AGTATTCTTGATACTCGCTGCT 57.072 40.909 0.00 0.00 46.28 4.24
432 433 4.087892 GCAGGGGAGCGAGCAGAA 62.088 66.667 0.00 0.00 0.00 3.02
444 445 2.585791 GAAAGAGGAGCGAGGCAGGG 62.586 65.000 0.00 0.00 0.00 4.45
445 446 1.153469 GAAAGAGGAGCGAGGCAGG 60.153 63.158 0.00 0.00 0.00 4.85
446 447 1.153469 GGAAAGAGGAGCGAGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
447 448 2.982130 GGAAAGAGGAGCGAGGCA 59.018 61.111 0.00 0.00 0.00 4.75
448 449 2.202810 CGGAAAGAGGAGCGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
449 450 2.496817 CCGGAAAGAGGAGCGAGG 59.503 66.667 0.00 0.00 0.00 4.63
450 451 1.605058 TTCCCGGAAAGAGGAGCGAG 61.605 60.000 0.73 0.00 32.57 5.03
451 452 1.608336 TTCCCGGAAAGAGGAGCGA 60.608 57.895 0.73 0.00 32.57 4.93
452 453 1.448013 GTTCCCGGAAAGAGGAGCG 60.448 63.158 0.73 0.00 32.57 5.03
453 454 1.448013 CGTTCCCGGAAAGAGGAGC 60.448 63.158 0.73 0.00 32.57 4.70
454 455 1.448013 GCGTTCCCGGAAAGAGGAG 60.448 63.158 16.39 0.00 32.57 3.69
455 456 1.885163 GAGCGTTCCCGGAAAGAGGA 61.885 60.000 16.39 0.00 33.68 3.71
456 457 1.448013 GAGCGTTCCCGGAAAGAGG 60.448 63.158 16.39 1.53 33.68 3.69
457 458 1.448013 GGAGCGTTCCCGGAAAGAG 60.448 63.158 16.39 5.85 37.53 2.85
468 469 4.250305 AGCGTTGGTGGGAGCGTT 62.250 61.111 0.00 0.00 34.34 4.84
576 578 1.153168 AAAGACCGCGATGGATGGG 60.153 57.895 8.23 0.00 42.00 4.00
612 614 7.894376 TTTAAGTCGTATCGAAACAGGAATT 57.106 32.000 0.00 0.00 37.72 2.17
631 633 5.279456 CCCTGGATTCCCTGTTGTTTTTAAG 60.279 44.000 0.00 0.00 0.00 1.85
642 920 0.916358 ACTGTCCCCTGGATTCCCTG 60.916 60.000 0.00 0.00 32.73 4.45
643 921 0.916358 CACTGTCCCCTGGATTCCCT 60.916 60.000 0.00 0.00 32.73 4.20
736 1014 5.582550 CGACATCACTCTAAGCATGAAGTA 58.417 41.667 0.00 0.00 0.00 2.24
755 1033 0.249699 AACCATTCACTCACGCGACA 60.250 50.000 15.93 0.00 0.00 4.35
765 1043 4.801516 GGTACACACAACAAAACCATTCAC 59.198 41.667 0.00 0.00 0.00 3.18
807 1085 3.418995 TCATACTATGGCCGACTCTACC 58.581 50.000 0.00 0.00 0.00 3.18
836 1114 9.736023 ATCTGAACTTTTCACATTTACAAACTC 57.264 29.630 0.00 0.00 35.46 3.01
921 1236 3.319122 GGAATGCTAATCCAACATCCACC 59.681 47.826 0.00 0.00 36.92 4.61
1003 1333 1.669265 CGGCCGGGAACTTCTTAAATC 59.331 52.381 20.10 0.00 0.00 2.17
1004 1334 1.680860 CCGGCCGGGAACTTCTTAAAT 60.681 52.381 37.42 0.00 38.47 1.40
1005 1335 0.321830 CCGGCCGGGAACTTCTTAAA 60.322 55.000 37.42 0.00 38.47 1.52
1115 1467 1.546834 GATCGGACGAAGAAGTTCCG 58.453 55.000 2.81 2.81 44.43 4.30
1182 1534 3.339141 GTGGGAGATGGTGTTTTCTCTC 58.661 50.000 0.00 0.00 39.49 3.20
1246 1612 6.089954 GGAGAAAGCACAAAATTAACAGCATC 59.910 38.462 0.00 0.00 0.00 3.91
1292 1961 1.024271 GCCTCTGCAACAAGAACACA 58.976 50.000 0.00 0.00 37.47 3.72
1426 2097 2.630158 ACTGCACAAGATCAGATCTGC 58.370 47.619 18.36 13.86 40.13 4.26
1432 2103 2.663879 GCAACGAACTGCACAAGATCAG 60.664 50.000 0.00 0.00 42.17 2.90
1484 2155 1.626654 CTTGCGCGGTGTAGTTCAGG 61.627 60.000 8.83 0.00 0.00 3.86
1630 2466 5.741388 ATACGCATGATCCTTGAAGAAAC 57.259 39.130 0.00 0.00 0.00 2.78
1665 2501 3.660865 ACAGACGACCTACAAATCCAAC 58.339 45.455 0.00 0.00 0.00 3.77
1675 2519 4.828939 TCCTTTTGAGTTACAGACGACCTA 59.171 41.667 0.00 0.00 0.00 3.08
1688 2532 9.971922 CAAACAAGAATAATCTTCCTTTTGAGT 57.028 29.630 10.62 0.00 44.11 3.41
1771 2621 1.639298 GCGACACAGGCTGTCCAATC 61.639 60.000 19.13 11.86 46.01 2.67
1973 2834 7.550551 TCTCTTTAATCTTCCATACACTGCAAG 59.449 37.037 0.00 0.00 42.29 4.01
1984 2845 6.299141 AGCAACAACTCTCTTTAATCTTCCA 58.701 36.000 0.00 0.00 0.00 3.53
1991 2852 6.710744 CCCTAGAAAGCAACAACTCTCTTTAA 59.289 38.462 0.00 0.00 0.00 1.52
2172 3618 4.332543 TGCACTTTGAATGTGACCGATATC 59.667 41.667 14.45 0.00 37.60 1.63
2173 3619 4.260985 TGCACTTTGAATGTGACCGATAT 58.739 39.130 14.45 0.00 37.60 1.63
2213 3668 2.186826 GCTAACATCCCGGCGCATT 61.187 57.895 10.83 0.00 0.00 3.56
2334 3789 1.137872 GAGATGGTGACGCTCTGGAAT 59.862 52.381 0.00 0.00 33.18 3.01
2373 3828 2.227089 GAGGATTCTCGCCACGTGGT 62.227 60.000 33.92 14.84 37.57 4.16
2374 3829 1.519455 GAGGATTCTCGCCACGTGG 60.519 63.158 30.66 30.66 38.53 4.94
2645 4102 2.989639 CCACCAAGGAGGCGATCA 59.010 61.111 0.00 0.00 43.14 2.92
2679 4136 1.338136 GCGAAGAGGGGAGGAATCCA 61.338 60.000 0.61 0.00 0.00 3.41
2770 4228 4.753516 TCACATGTGATCCTCGGTTTAT 57.246 40.909 24.56 0.00 34.14 1.40
2792 4250 2.203070 GACTCATGGGCGCGGATT 60.203 61.111 8.83 0.00 0.00 3.01
2843 4302 0.322816 TCTGGGAAGAAGCATGTGCC 60.323 55.000 0.57 0.00 43.38 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.