Multiple sequence alignment - TraesCS7B01G026900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G026900 chr7B 100.000 3023 0 0 1 3023 25664644 25667666 0.000000e+00 5583.0
1 TraesCS7B01G026900 chr7B 96.090 2353 64 5 1 2326 707577784 707580135 0.000000e+00 3810.0
2 TraesCS7B01G026900 chr7B 85.572 901 90 13 1443 2307 144514231 144515127 0.000000e+00 907.0
3 TraesCS7B01G026900 chr7B 97.093 344 10 0 2680 3023 145042139 145042482 5.620000e-162 580.0
4 TraesCS7B01G026900 chr7B 97.085 343 10 0 2681 3023 552549469 552549127 2.020000e-161 579.0
5 TraesCS7B01G026900 chr7B 83.766 616 73 16 1733 2326 530442159 530441549 2.630000e-155 558.0
6 TraesCS7B01G026900 chr4B 97.380 2328 40 2 1 2307 165042229 165044556 0.000000e+00 3941.0
7 TraesCS7B01G026900 chr4B 83.612 659 86 14 1690 2326 618083031 618083689 1.550000e-167 599.0
8 TraesCS7B01G026900 chr4B 96.399 361 9 4 2665 3023 33648908 33648550 2.600000e-165 592.0
9 TraesCS7B01G026900 chr4B 88.785 214 23 1 4 216 484589445 484589232 8.310000e-66 261.0
10 TraesCS7B01G026900 chr4B 93.750 96 6 0 1 96 618081665 618081760 8.730000e-31 145.0
11 TraesCS7B01G026900 chr1B 96.767 2351 51 2 1 2326 642922044 642919694 0.000000e+00 3897.0
12 TraesCS7B01G026900 chr1B 96.220 1402 28 2 950 2326 642918015 642916614 0.000000e+00 2272.0
13 TraesCS7B01G026900 chr1B 96.286 350 13 0 2674 3023 104949976 104950325 2.610000e-160 575.0
14 TraesCS7B01G026900 chr1B 96.034 353 11 3 2671 3023 104347018 104347367 3.380000e-159 571.0
15 TraesCS7B01G026900 chr1B 91.705 217 17 1 1 216 579787924 579787708 1.760000e-77 300.0
16 TraesCS7B01G026900 chr6B 95.409 1089 24 4 1264 2326 27823149 27822061 0.000000e+00 1711.0
17 TraesCS7B01G026900 chr6B 80.025 2403 371 56 1 2326 157862889 157860519 0.000000e+00 1677.0
18 TraesCS7B01G026900 chr6B 81.346 1887 291 30 497 2324 481791474 481793358 0.000000e+00 1478.0
19 TraesCS7B01G026900 chr6B 77.295 1634 282 52 717 2307 213639286 213637699 0.000000e+00 880.0
20 TraesCS7B01G026900 chr6B 96.830 347 9 1 2679 3023 87673522 87673868 2.020000e-161 579.0
21 TraesCS7B01G026900 chr6B 91.244 217 18 1 1 216 71582003 71581787 8.200000e-76 294.0
22 TraesCS7B01G026900 chr6B 91.509 212 17 1 1 211 487554704 487554915 1.060000e-74 291.0
23 TraesCS7B01G026900 chr6B 88.479 217 24 1 1 216 709003784 709003568 8.310000e-66 261.0
24 TraesCS7B01G026900 chr6B 94.771 153 6 2 2156 2307 716590524 716590373 1.400000e-58 237.0
25 TraesCS7B01G026900 chr6A 79.784 2409 357 66 1 2326 24335676 24333315 0.000000e+00 1631.0
26 TraesCS7B01G026900 chr2D 84.596 1188 116 21 1161 2307 192064366 192065527 0.000000e+00 1118.0
27 TraesCS7B01G026900 chr2D 85.502 269 38 1 1690 1958 19219081 19218814 2.290000e-71 279.0
28 TraesCS7B01G026900 chr3B 82.297 740 94 19 1624 2326 228676115 228676854 9.270000e-170 606.0
29 TraesCS7B01G026900 chr3B 97.368 342 9 0 2682 3023 171120078 171120419 1.560000e-162 582.0
30 TraesCS7B01G026900 chr3A 97.085 343 10 0 2681 3023 522043380 522043722 2.020000e-161 579.0
31 TraesCS7B01G026900 chr3A 84.861 502 59 13 1737 2221 635481864 635481363 9.740000e-135 490.0
32 TraesCS7B01G026900 chr2B 95.775 355 14 1 2670 3023 675208176 675208530 3.380000e-159 571.0
33 TraesCS7B01G026900 chr2B 91.705 217 17 1 1 216 46669676 46669892 1.760000e-77 300.0
34 TraesCS7B01G026900 chr2B 91.244 217 18 1 1 216 704117690 704117906 8.200000e-76 294.0
35 TraesCS7B01G026900 chr5B 84.119 573 74 13 1752 2307 559176280 559176852 3.430000e-149 538.0
36 TraesCS7B01G026900 chr2A 84.787 493 53 9 11 481 124288853 124289345 2.730000e-130 475.0
37 TraesCS7B01G026900 chr2A 93.204 103 2 1 2228 2325 610980709 610980607 2.430000e-31 147.0
38 TraesCS7B01G026900 chr2A 85.714 133 18 1 2360 2492 18394007 18394138 4.060000e-29 139.0
39 TraesCS7B01G026900 chrUn 91.358 324 25 2 2361 2682 50131888 50131566 9.950000e-120 440.0
40 TraesCS7B01G026900 chrUn 90.093 323 27 3 2361 2680 50135457 50135137 6.030000e-112 414.0
41 TraesCS7B01G026900 chrUn 85.507 69 5 2 2379 2443 302638450 302638517 1.950000e-07 67.6
42 TraesCS7B01G026900 chr4A 91.358 324 25 2 2361 2682 491603822 491604144 9.950000e-120 440.0
43 TraesCS7B01G026900 chr4A 90.407 344 12 6 1976 2299 26016750 26016408 1.660000e-117 433.0
44 TraesCS7B01G026900 chr4A 88.957 326 31 3 2361 2682 491600146 491600470 6.070000e-107 398.0
45 TraesCS7B01G026900 chr4A 84.689 209 27 3 1 208 187560070 187559866 1.420000e-48 204.0
46 TraesCS7B01G026900 chr4A 91.071 112 10 0 2361 2472 718788319 718788430 5.220000e-33 152.0
47 TraesCS7B01G026900 chr7D 81.670 551 69 21 1774 2304 167074203 167074741 2.150000e-116 429.0
48 TraesCS7B01G026900 chr5A 87.768 327 30 5 2361 2682 663098815 663098494 1.020000e-99 374.0
49 TraesCS7B01G026900 chr4D 84.932 219 24 5 1 216 298237253 298237041 2.360000e-51 213.0
50 TraesCS7B01G026900 chr5D 84.286 70 5 1 454 517 410290396 410290327 2.520000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G026900 chr7B 25664644 25667666 3022 False 5583.0 5583 100.0000 1 3023 1 chr7B.!!$F1 3022
1 TraesCS7B01G026900 chr7B 707577784 707580135 2351 False 3810.0 3810 96.0900 1 2326 1 chr7B.!!$F4 2325
2 TraesCS7B01G026900 chr7B 144514231 144515127 896 False 907.0 907 85.5720 1443 2307 1 chr7B.!!$F2 864
3 TraesCS7B01G026900 chr7B 530441549 530442159 610 True 558.0 558 83.7660 1733 2326 1 chr7B.!!$R1 593
4 TraesCS7B01G026900 chr4B 165042229 165044556 2327 False 3941.0 3941 97.3800 1 2307 1 chr4B.!!$F1 2306
5 TraesCS7B01G026900 chr4B 618081665 618083689 2024 False 372.0 599 88.6810 1 2326 2 chr4B.!!$F2 2325
6 TraesCS7B01G026900 chr1B 642916614 642922044 5430 True 3084.5 3897 96.4935 1 2326 2 chr1B.!!$R2 2325
7 TraesCS7B01G026900 chr6B 27822061 27823149 1088 True 1711.0 1711 95.4090 1264 2326 1 chr6B.!!$R1 1062
8 TraesCS7B01G026900 chr6B 157860519 157862889 2370 True 1677.0 1677 80.0250 1 2326 1 chr6B.!!$R3 2325
9 TraesCS7B01G026900 chr6B 481791474 481793358 1884 False 1478.0 1478 81.3460 497 2324 1 chr6B.!!$F2 1827
10 TraesCS7B01G026900 chr6B 213637699 213639286 1587 True 880.0 880 77.2950 717 2307 1 chr6B.!!$R4 1590
11 TraesCS7B01G026900 chr6A 24333315 24335676 2361 True 1631.0 1631 79.7840 1 2326 1 chr6A.!!$R1 2325
12 TraesCS7B01G026900 chr2D 192064366 192065527 1161 False 1118.0 1118 84.5960 1161 2307 1 chr2D.!!$F1 1146
13 TraesCS7B01G026900 chr3B 228676115 228676854 739 False 606.0 606 82.2970 1624 2326 1 chr3B.!!$F2 702
14 TraesCS7B01G026900 chr3A 635481363 635481864 501 True 490.0 490 84.8610 1737 2221 1 chr3A.!!$R1 484
15 TraesCS7B01G026900 chr5B 559176280 559176852 572 False 538.0 538 84.1190 1752 2307 1 chr5B.!!$F1 555
16 TraesCS7B01G026900 chrUn 50131566 50135457 3891 True 427.0 440 90.7255 2361 2682 2 chrUn.!!$R1 321
17 TraesCS7B01G026900 chr4A 491600146 491604144 3998 False 419.0 440 90.1575 2361 2682 2 chr4A.!!$F2 321
18 TraesCS7B01G026900 chr7D 167074203 167074741 538 False 429.0 429 81.6700 1774 2304 1 chr7D.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 573 2.577059 GTGGGGTGAGCGATTCGA 59.423 61.111 10.88 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2342 5564 0.031857 CAGCCCTGAGATCAGTAGCG 59.968 60.0 8.93 4.92 42.59 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
520 573 2.577059 GTGGGGTGAGCGATTCGA 59.423 61.111 10.88 0.00 0.00 3.71
911 977 3.120979 CTCCGCATCGACGCACCTA 62.121 63.158 3.68 0.00 0.00 3.08
1220 1294 0.318120 GTTGGGAATGTTGCTGGTGG 59.682 55.000 0.00 0.00 0.00 4.61
1343 1421 3.210528 GGAGCATGCTGAGGCTGC 61.211 66.667 28.27 8.49 39.98 5.25
1351 4509 4.152964 CTGAGGCTGCTGCGGCTA 62.153 66.667 30.31 17.02 40.21 3.93
1455 4613 0.254178 ATGGACGAGAAGCATGCCTT 59.746 50.000 15.66 8.13 36.19 4.35
1684 4843 2.674220 CCCTCTCCACCTCCCTTGC 61.674 68.421 0.00 0.00 0.00 4.01
1885 5074 0.617935 TGGGAAGACGATTGGATGCA 59.382 50.000 0.00 0.00 0.00 3.96
1928 5117 2.487265 GGAAGAAGCACAAGAAGGGTGA 60.487 50.000 0.00 0.00 38.54 4.02
1953 5142 2.123425 TCTAGATCCGGCGCCCTT 60.123 61.111 23.46 5.30 0.00 3.95
2129 5326 7.380602 AGCGAGTTGATTGATTTTCTTTTCTTG 59.619 33.333 0.00 0.00 0.00 3.02
2311 5533 1.048601 AGACGAGGCAAAACTCTCCA 58.951 50.000 0.00 0.00 35.33 3.86
2342 5564 3.646736 AAAAGGGTCAGGCCAGTATAC 57.353 47.619 5.01 0.00 39.65 1.47
2343 5565 1.120530 AAGGGTCAGGCCAGTATACG 58.879 55.000 5.01 0.00 39.65 3.06
2344 5566 1.069258 GGGTCAGGCCAGTATACGC 59.931 63.158 5.01 0.00 39.65 4.42
2345 5567 1.400530 GGGTCAGGCCAGTATACGCT 61.401 60.000 5.01 0.00 39.65 5.07
2346 5568 1.325355 GGTCAGGCCAGTATACGCTA 58.675 55.000 5.01 0.00 37.17 4.26
2347 5569 1.000496 GGTCAGGCCAGTATACGCTAC 60.000 57.143 5.01 0.00 37.17 3.58
2348 5570 1.955080 GTCAGGCCAGTATACGCTACT 59.045 52.381 5.01 0.00 0.00 2.57
2349 5571 1.954382 TCAGGCCAGTATACGCTACTG 59.046 52.381 5.01 15.42 43.26 2.74
2350 5572 1.954382 CAGGCCAGTATACGCTACTGA 59.046 52.381 21.27 0.00 45.69 3.41
2351 5573 2.558795 CAGGCCAGTATACGCTACTGAT 59.441 50.000 21.27 8.79 45.69 2.90
2352 5574 2.820787 AGGCCAGTATACGCTACTGATC 59.179 50.000 21.27 14.38 45.69 2.92
2353 5575 2.820787 GGCCAGTATACGCTACTGATCT 59.179 50.000 21.27 0.00 45.69 2.75
2354 5576 3.119779 GGCCAGTATACGCTACTGATCTC 60.120 52.174 21.27 10.68 45.69 2.75
2355 5577 3.502595 GCCAGTATACGCTACTGATCTCA 59.497 47.826 21.27 0.00 45.69 3.27
2356 5578 4.378978 GCCAGTATACGCTACTGATCTCAG 60.379 50.000 21.27 5.66 45.69 3.35
2377 5599 1.972660 GCTGTTGGCCTAGACCCGAT 61.973 60.000 3.32 0.00 34.27 4.18
2380 5602 1.689233 TTGGCCTAGACCCGATGCT 60.689 57.895 3.32 0.00 0.00 3.79
2389 5611 2.180276 AGACCCGATGCTGAGTACTTT 58.820 47.619 0.00 0.00 0.00 2.66
2391 5613 1.207329 ACCCGATGCTGAGTACTTTCC 59.793 52.381 0.00 0.00 0.00 3.13
2393 5615 1.134367 CCGATGCTGAGTACTTTCCGA 59.866 52.381 0.00 0.00 0.00 4.55
2394 5616 2.186076 CGATGCTGAGTACTTTCCGAC 58.814 52.381 0.00 0.00 0.00 4.79
2396 5618 1.241165 TGCTGAGTACTTTCCGACGA 58.759 50.000 0.00 0.00 0.00 4.20
2397 5619 1.068748 TGCTGAGTACTTTCCGACGAC 60.069 52.381 0.00 0.00 0.00 4.34
2408 9395 4.470170 CGACGACGGCGATGACCA 62.470 66.667 22.49 0.00 41.64 4.02
2423 9410 0.727122 GACCAACGACGAACGACGAT 60.727 55.000 22.29 10.44 45.77 3.73
2431 9418 0.589708 ACGAACGACGATGACAGACA 59.410 50.000 0.00 0.00 45.77 3.41
2453 9440 1.081175 CTTGCTGACGAGCTCGACA 60.081 57.895 40.58 36.28 46.39 4.35
2501 9488 1.079503 GTACAAAGCTGGCTTCCTCG 58.920 55.000 8.33 1.30 34.84 4.63
2532 9519 1.334869 GCAAAGCTAGCACACACAACT 59.665 47.619 18.83 0.00 0.00 3.16
2585 9572 4.344359 TGTGCTTGGTAGATACACAACA 57.656 40.909 0.00 0.00 38.24 3.33
2589 9576 4.062293 GCTTGGTAGATACACAACACACA 58.938 43.478 0.00 0.00 0.00 3.72
2682 9669 5.005107 GTGTCGCTCCCGTTATTACTTTTAG 59.995 44.000 0.00 0.00 35.54 1.85
2683 9670 4.505556 GTCGCTCCCGTTATTACTTTTAGG 59.494 45.833 0.00 0.00 35.54 2.69
2684 9671 3.805971 CGCTCCCGTTATTACTTTTAGGG 59.194 47.826 0.00 0.00 38.73 3.53
2685 9672 4.681512 CGCTCCCGTTATTACTTTTAGGGT 60.682 45.833 0.00 0.00 38.52 4.34
2686 9673 4.813161 GCTCCCGTTATTACTTTTAGGGTC 59.187 45.833 0.00 0.00 38.52 4.46
2687 9674 5.009854 TCCCGTTATTACTTTTAGGGTCG 57.990 43.478 0.00 0.00 38.52 4.79
2688 9675 3.557185 CCCGTTATTACTTTTAGGGTCGC 59.443 47.826 0.00 0.00 33.00 5.19
2689 9676 3.243643 CCGTTATTACTTTTAGGGTCGCG 59.756 47.826 0.00 0.00 0.00 5.87
2690 9677 3.302028 CGTTATTACTTTTAGGGTCGCGC 60.302 47.826 0.00 0.00 0.00 6.86
2691 9678 2.685850 ATTACTTTTAGGGTCGCGCT 57.314 45.000 5.56 0.00 0.00 5.92
2692 9679 3.806625 ATTACTTTTAGGGTCGCGCTA 57.193 42.857 5.56 0.00 0.00 4.26
2693 9680 3.591196 TTACTTTTAGGGTCGCGCTAA 57.409 42.857 5.56 0.09 37.16 3.09
2694 9681 1.718396 ACTTTTAGGGTCGCGCTAAC 58.282 50.000 5.56 3.16 38.32 2.34
2695 9682 1.274447 ACTTTTAGGGTCGCGCTAACT 59.726 47.619 5.56 0.50 38.32 2.24
2696 9683 1.659098 CTTTTAGGGTCGCGCTAACTG 59.341 52.381 5.56 7.69 38.32 3.16
2697 9684 0.738412 TTTAGGGTCGCGCTAACTGC 60.738 55.000 5.56 0.00 38.32 4.40
2698 9685 2.567564 TTAGGGTCGCGCTAACTGCC 62.568 60.000 5.56 1.49 34.71 4.85
2699 9686 4.752879 GGGTCGCGCTAACTGCCA 62.753 66.667 5.56 0.00 38.78 4.92
2700 9687 3.488090 GGTCGCGCTAACTGCCAC 61.488 66.667 5.56 0.00 38.78 5.01
2701 9688 2.736995 GTCGCGCTAACTGCCACA 60.737 61.111 5.56 0.00 38.78 4.17
2702 9689 2.736995 TCGCGCTAACTGCCACAC 60.737 61.111 5.56 0.00 38.78 3.82
2703 9690 4.134187 CGCGCTAACTGCCACACG 62.134 66.667 5.56 0.00 38.78 4.49
2704 9691 3.041940 GCGCTAACTGCCACACGT 61.042 61.111 0.00 0.00 38.78 4.49
2705 9692 2.853210 CGCTAACTGCCACACGTG 59.147 61.111 15.48 15.48 38.78 4.49
2706 9693 1.954146 CGCTAACTGCCACACGTGT 60.954 57.895 17.22 17.22 38.78 4.49
2707 9694 1.569493 GCTAACTGCCACACGTGTG 59.431 57.895 36.13 36.13 45.23 3.82
2715 9702 3.333414 CACACGTGTGGCAGGAAG 58.667 61.111 35.65 12.08 42.10 3.46
2716 9703 2.111043 ACACGTGTGGCAGGAAGG 59.889 61.111 22.71 0.00 34.19 3.46
2717 9704 2.669569 CACGTGTGGCAGGAAGGG 60.670 66.667 7.58 0.00 0.00 3.95
2718 9705 2.847234 ACGTGTGGCAGGAAGGGA 60.847 61.111 0.00 0.00 0.00 4.20
2719 9706 2.046892 CGTGTGGCAGGAAGGGAG 60.047 66.667 0.00 0.00 0.00 4.30
2720 9707 2.583441 CGTGTGGCAGGAAGGGAGA 61.583 63.158 0.00 0.00 0.00 3.71
2721 9708 1.003233 GTGTGGCAGGAAGGGAGAC 60.003 63.158 0.00 0.00 0.00 3.36
2722 9709 2.266055 GTGGCAGGAAGGGAGACG 59.734 66.667 0.00 0.00 0.00 4.18
2723 9710 2.203788 TGGCAGGAAGGGAGACGT 60.204 61.111 0.00 0.00 0.00 4.34
2724 9711 1.077805 TGGCAGGAAGGGAGACGTA 59.922 57.895 0.00 0.00 0.00 3.57
2725 9712 1.255667 TGGCAGGAAGGGAGACGTAC 61.256 60.000 0.00 0.00 0.00 3.67
2726 9713 0.971447 GGCAGGAAGGGAGACGTACT 60.971 60.000 0.00 0.00 0.00 2.73
2727 9714 1.684248 GGCAGGAAGGGAGACGTACTA 60.684 57.143 0.00 0.00 0.00 1.82
2728 9715 1.404748 GCAGGAAGGGAGACGTACTAC 59.595 57.143 0.00 0.00 0.00 2.73
2729 9716 2.719739 CAGGAAGGGAGACGTACTACA 58.280 52.381 0.00 0.00 0.00 2.74
2730 9717 2.422832 CAGGAAGGGAGACGTACTACAC 59.577 54.545 0.00 0.00 0.00 2.90
2745 9732 7.642060 CGTACTACACGTCTCTAATGTAAAC 57.358 40.000 0.00 0.00 45.82 2.01
2746 9733 7.236474 CGTACTACACGTCTCTAATGTAAACA 58.764 38.462 0.00 0.00 45.82 2.83
2747 9734 7.424738 CGTACTACACGTCTCTAATGTAAACAG 59.575 40.741 0.00 0.00 45.82 3.16
2748 9735 7.444629 ACTACACGTCTCTAATGTAAACAGA 57.555 36.000 0.00 0.00 0.00 3.41
2749 9736 8.053026 ACTACACGTCTCTAATGTAAACAGAT 57.947 34.615 0.00 0.00 0.00 2.90
2750 9737 8.521176 ACTACACGTCTCTAATGTAAACAGATT 58.479 33.333 0.00 0.00 0.00 2.40
2751 9738 7.582435 ACACGTCTCTAATGTAAACAGATTG 57.418 36.000 0.00 0.00 0.00 2.67
2752 9739 7.152645 ACACGTCTCTAATGTAAACAGATTGT 58.847 34.615 0.00 0.00 0.00 2.71
2753 9740 7.328737 ACACGTCTCTAATGTAAACAGATTGTC 59.671 37.037 0.00 0.00 0.00 3.18
2754 9741 7.328493 CACGTCTCTAATGTAAACAGATTGTCA 59.672 37.037 0.00 0.00 0.00 3.58
2755 9742 7.328737 ACGTCTCTAATGTAAACAGATTGTCAC 59.671 37.037 0.00 0.00 0.00 3.67
2756 9743 7.461546 CGTCTCTAATGTAAACAGATTGTCACG 60.462 40.741 0.00 0.00 0.00 4.35
2757 9744 7.328737 GTCTCTAATGTAAACAGATTGTCACGT 59.671 37.037 0.00 0.00 0.00 4.49
2758 9745 7.541091 TCTCTAATGTAAACAGATTGTCACGTC 59.459 37.037 0.00 0.00 0.00 4.34
2759 9746 7.149307 TCTAATGTAAACAGATTGTCACGTCA 58.851 34.615 0.00 0.00 0.00 4.35
2760 9747 6.801539 AATGTAAACAGATTGTCACGTCAT 57.198 33.333 0.00 0.00 0.00 3.06
2761 9748 5.839262 TGTAAACAGATTGTCACGTCATC 57.161 39.130 0.00 0.00 0.00 2.92
2762 9749 4.384547 TGTAAACAGATTGTCACGTCATCG 59.615 41.667 0.00 0.00 43.34 3.84
2763 9750 1.350193 ACAGATTGTCACGTCATCGC 58.650 50.000 0.00 0.00 41.18 4.58
2764 9751 1.336795 ACAGATTGTCACGTCATCGCA 60.337 47.619 0.00 0.00 41.18 5.10
2765 9752 1.929169 CAGATTGTCACGTCATCGCAT 59.071 47.619 0.00 0.00 41.18 4.73
2766 9753 1.929169 AGATTGTCACGTCATCGCATG 59.071 47.619 0.00 0.00 41.18 4.06
2767 9754 0.374758 ATTGTCACGTCATCGCATGC 59.625 50.000 7.91 7.91 41.18 4.06
2768 9755 0.948141 TTGTCACGTCATCGCATGCA 60.948 50.000 19.57 5.34 41.18 3.96
2769 9756 0.740516 TGTCACGTCATCGCATGCAT 60.741 50.000 19.57 7.64 41.18 3.96
2770 9757 0.315625 GTCACGTCATCGCATGCATG 60.316 55.000 22.70 22.70 41.18 4.06
2790 9777 5.898174 CATGCATGCAGGAATCTTTTTAGA 58.102 37.500 27.49 0.00 0.00 2.10
2791 9778 6.513180 CATGCATGCAGGAATCTTTTTAGAT 58.487 36.000 27.49 0.00 0.00 1.98
2792 9779 6.534475 TGCATGCAGGAATCTTTTTAGATT 57.466 33.333 18.46 0.26 40.81 2.40
2793 9780 6.938507 TGCATGCAGGAATCTTTTTAGATTT 58.061 32.000 18.46 0.00 38.50 2.17
2794 9781 7.388437 TGCATGCAGGAATCTTTTTAGATTTT 58.612 30.769 18.46 0.00 38.50 1.82
2795 9782 7.546667 TGCATGCAGGAATCTTTTTAGATTTTC 59.453 33.333 18.46 0.00 38.50 2.29
2796 9783 7.546667 GCATGCAGGAATCTTTTTAGATTTTCA 59.453 33.333 14.21 0.49 38.50 2.69
2797 9784 9.084164 CATGCAGGAATCTTTTTAGATTTTCAG 57.916 33.333 0.00 0.00 38.50 3.02
2798 9785 8.181904 TGCAGGAATCTTTTTAGATTTTCAGT 57.818 30.769 2.26 0.00 38.50 3.41
2799 9786 8.641541 TGCAGGAATCTTTTTAGATTTTCAGTT 58.358 29.630 2.26 0.00 38.50 3.16
2800 9787 9.481340 GCAGGAATCTTTTTAGATTTTCAGTTT 57.519 29.630 2.26 0.00 38.50 2.66
2833 9820 9.601971 TGTTTTATCTCTTAAACGAAAAATCCG 57.398 29.630 0.00 0.00 37.12 4.18
2834 9821 9.815936 GTTTTATCTCTTAAACGAAAAATCCGA 57.184 29.630 0.00 0.00 29.47 4.55
2837 9824 9.982291 TTATCTCTTAAACGAAAAATCCGATTG 57.018 29.630 0.00 0.00 0.00 2.67
2838 9825 7.661127 TCTCTTAAACGAAAAATCCGATTGA 57.339 32.000 0.00 0.00 0.00 2.57
2839 9826 8.090250 TCTCTTAAACGAAAAATCCGATTGAA 57.910 30.769 0.00 0.00 0.00 2.69
2840 9827 8.561212 TCTCTTAAACGAAAAATCCGATTGAAA 58.439 29.630 0.00 0.00 0.00 2.69
2841 9828 9.176181 CTCTTAAACGAAAAATCCGATTGAAAA 57.824 29.630 0.00 0.00 0.00 2.29
2842 9829 9.685828 TCTTAAACGAAAAATCCGATTGAAAAT 57.314 25.926 0.00 0.00 0.00 1.82
2843 9830 9.937577 CTTAAACGAAAAATCCGATTGAAAATC 57.062 29.630 0.00 0.00 0.00 2.17
2844 9831 6.944557 AACGAAAAATCCGATTGAAAATCC 57.055 33.333 0.00 0.00 0.00 3.01
2845 9832 5.092781 ACGAAAAATCCGATTGAAAATCCG 58.907 37.500 0.00 0.00 0.00 4.18
2846 9833 5.092781 CGAAAAATCCGATTGAAAATCCGT 58.907 37.500 0.00 0.00 0.00 4.69
2847 9834 5.571357 CGAAAAATCCGATTGAAAATCCGTT 59.429 36.000 0.00 0.00 0.00 4.44
2848 9835 6.088883 CGAAAAATCCGATTGAAAATCCGTTT 59.911 34.615 0.00 0.00 0.00 3.60
2849 9836 7.358848 CGAAAAATCCGATTGAAAATCCGTTTT 60.359 33.333 0.00 0.00 40.13 2.43
2862 9849 7.899178 AAAATCCGTTTTCACCATTAAATCC 57.101 32.000 0.00 0.00 32.14 3.01
2863 9850 5.592104 ATCCGTTTTCACCATTAAATCCC 57.408 39.130 0.00 0.00 0.00 3.85
2864 9851 4.668636 TCCGTTTTCACCATTAAATCCCT 58.331 39.130 0.00 0.00 0.00 4.20
2865 9852 4.703093 TCCGTTTTCACCATTAAATCCCTC 59.297 41.667 0.00 0.00 0.00 4.30
2866 9853 4.438200 CCGTTTTCACCATTAAATCCCTCG 60.438 45.833 0.00 0.00 0.00 4.63
2867 9854 4.421058 GTTTTCACCATTAAATCCCTCGC 58.579 43.478 0.00 0.00 0.00 5.03
2868 9855 1.948104 TCACCATTAAATCCCTCGCG 58.052 50.000 0.00 0.00 0.00 5.87
2869 9856 1.483004 TCACCATTAAATCCCTCGCGA 59.517 47.619 9.26 9.26 0.00 5.87
2870 9857 2.104111 TCACCATTAAATCCCTCGCGAT 59.896 45.455 10.36 0.00 0.00 4.58
2871 9858 2.224079 CACCATTAAATCCCTCGCGATG 59.776 50.000 10.36 6.89 0.00 3.84
2872 9859 2.104111 ACCATTAAATCCCTCGCGATGA 59.896 45.455 10.36 10.40 0.00 2.92
2873 9860 2.738846 CCATTAAATCCCTCGCGATGAG 59.261 50.000 10.36 0.80 44.83 2.90
2885 9872 3.849911 TCGCGATGAGATCTTCAAAACT 58.150 40.909 3.71 0.00 39.77 2.66
2886 9873 4.993905 TCGCGATGAGATCTTCAAAACTA 58.006 39.130 3.71 0.00 39.77 2.24
2887 9874 5.037385 TCGCGATGAGATCTTCAAAACTAG 58.963 41.667 3.71 0.00 39.77 2.57
2888 9875 5.037385 CGCGATGAGATCTTCAAAACTAGA 58.963 41.667 0.00 0.00 39.77 2.43
2889 9876 5.689514 CGCGATGAGATCTTCAAAACTAGAT 59.310 40.000 0.00 0.00 39.77 1.98
2890 9877 6.129221 CGCGATGAGATCTTCAAAACTAGATC 60.129 42.308 0.00 0.00 39.77 2.75
2891 9878 6.145371 GCGATGAGATCTTCAAAACTAGATCC 59.855 42.308 0.00 2.51 39.77 3.36
2892 9879 6.644592 CGATGAGATCTTCAAAACTAGATCCC 59.355 42.308 0.00 0.00 39.77 3.85
2893 9880 6.874278 TGAGATCTTCAAAACTAGATCCCA 57.126 37.500 0.00 1.25 38.24 4.37
2894 9881 7.443302 TGAGATCTTCAAAACTAGATCCCAT 57.557 36.000 0.00 0.00 38.24 4.00
2895 9882 7.278135 TGAGATCTTCAAAACTAGATCCCATG 58.722 38.462 0.00 0.00 38.24 3.66
2896 9883 7.092712 TGAGATCTTCAAAACTAGATCCCATGT 60.093 37.037 0.00 0.00 38.24 3.21
2897 9884 7.637511 AGATCTTCAAAACTAGATCCCATGTT 58.362 34.615 0.00 0.00 38.24 2.71
2898 9885 7.555554 AGATCTTCAAAACTAGATCCCATGTTG 59.444 37.037 0.00 0.00 38.24 3.33
2899 9886 6.778821 TCTTCAAAACTAGATCCCATGTTGA 58.221 36.000 0.00 0.00 0.00 3.18
2900 9887 7.405292 TCTTCAAAACTAGATCCCATGTTGAT 58.595 34.615 0.00 0.00 0.00 2.57
2901 9888 8.548025 TCTTCAAAACTAGATCCCATGTTGATA 58.452 33.333 0.00 0.00 0.00 2.15
2902 9889 9.347240 CTTCAAAACTAGATCCCATGTTGATAT 57.653 33.333 0.00 0.00 0.00 1.63
2903 9890 8.681486 TCAAAACTAGATCCCATGTTGATATG 57.319 34.615 0.00 0.00 0.00 1.78
2904 9891 8.274322 TCAAAACTAGATCCCATGTTGATATGT 58.726 33.333 0.00 0.00 0.00 2.29
2905 9892 8.906867 CAAAACTAGATCCCATGTTGATATGTT 58.093 33.333 0.00 0.00 0.00 2.71
2906 9893 9.479549 AAAACTAGATCCCATGTTGATATGTTT 57.520 29.630 0.00 3.85 0.00 2.83
2907 9894 9.479549 AAACTAGATCCCATGTTGATATGTTTT 57.520 29.630 0.00 0.00 0.00 2.43
2908 9895 8.455903 ACTAGATCCCATGTTGATATGTTTTG 57.544 34.615 0.00 0.00 0.00 2.44
2909 9896 8.274322 ACTAGATCCCATGTTGATATGTTTTGA 58.726 33.333 0.00 0.00 0.00 2.69
2910 9897 9.293404 CTAGATCCCATGTTGATATGTTTTGAT 57.707 33.333 0.00 0.00 0.00 2.57
2911 9898 7.948357 AGATCCCATGTTGATATGTTTTGATG 58.052 34.615 0.00 0.00 0.00 3.07
2912 9899 7.781219 AGATCCCATGTTGATATGTTTTGATGA 59.219 33.333 0.00 0.00 0.00 2.92
2913 9900 7.715266 TCCCATGTTGATATGTTTTGATGAA 57.285 32.000 0.00 0.00 0.00 2.57
2914 9901 8.308851 TCCCATGTTGATATGTTTTGATGAAT 57.691 30.769 0.00 0.00 0.00 2.57
2915 9902 8.760735 TCCCATGTTGATATGTTTTGATGAATT 58.239 29.630 0.00 0.00 0.00 2.17
2916 9903 9.386010 CCCATGTTGATATGTTTTGATGAATTT 57.614 29.630 0.00 0.00 0.00 1.82
2943 9930 8.729805 TTTTTGAATTAAAAGTTGCCATGTCT 57.270 26.923 0.00 0.00 39.29 3.41
2944 9931 9.823647 TTTTTGAATTAAAAGTTGCCATGTCTA 57.176 25.926 0.00 0.00 39.29 2.59
2945 9932 9.995003 TTTTGAATTAAAAGTTGCCATGTCTAT 57.005 25.926 0.00 0.00 33.48 1.98
2946 9933 9.995003 TTTGAATTAAAAGTTGCCATGTCTATT 57.005 25.926 0.00 0.00 0.00 1.73
2947 9934 8.984891 TGAATTAAAAGTTGCCATGTCTATTG 57.015 30.769 0.00 0.00 0.00 1.90
2948 9935 7.545265 TGAATTAAAAGTTGCCATGTCTATTGC 59.455 33.333 0.00 0.00 0.00 3.56
2949 9936 4.870123 AAAAGTTGCCATGTCTATTGCA 57.130 36.364 0.00 0.00 33.58 4.08
2950 9937 5.410355 AAAAGTTGCCATGTCTATTGCAT 57.590 34.783 0.00 0.00 35.21 3.96
2951 9938 6.528537 AAAAGTTGCCATGTCTATTGCATA 57.471 33.333 0.00 0.00 35.21 3.14
2952 9939 6.720112 AAAGTTGCCATGTCTATTGCATAT 57.280 33.333 0.00 0.00 35.21 1.78
2953 9940 5.700722 AGTTGCCATGTCTATTGCATATG 57.299 39.130 0.00 0.00 35.21 1.78
2954 9941 5.379187 AGTTGCCATGTCTATTGCATATGA 58.621 37.500 6.97 0.00 35.21 2.15
2955 9942 5.829391 AGTTGCCATGTCTATTGCATATGAA 59.171 36.000 6.97 0.00 35.21 2.57
2956 9943 6.492429 AGTTGCCATGTCTATTGCATATGAAT 59.508 34.615 6.97 6.30 35.21 2.57
2957 9944 6.904463 TGCCATGTCTATTGCATATGAATT 57.096 33.333 6.97 0.00 30.76 2.17
2958 9945 6.683715 TGCCATGTCTATTGCATATGAATTG 58.316 36.000 6.97 5.20 30.76 2.32
2959 9946 5.575606 GCCATGTCTATTGCATATGAATTGC 59.424 40.000 6.97 0.00 40.55 3.56
2960 9947 6.097356 CCATGTCTATTGCATATGAATTGCC 58.903 40.000 6.97 0.00 39.39 4.52
2961 9948 6.294843 CCATGTCTATTGCATATGAATTGCCA 60.295 38.462 6.97 1.96 39.39 4.92
2962 9949 6.904463 TGTCTATTGCATATGAATTGCCAT 57.096 33.333 6.97 0.00 39.39 4.40
2963 9950 6.683715 TGTCTATTGCATATGAATTGCCATG 58.316 36.000 6.97 0.00 39.39 3.66
2964 9951 6.490721 TGTCTATTGCATATGAATTGCCATGA 59.509 34.615 6.97 0.00 39.39 3.07
2965 9952 6.805271 GTCTATTGCATATGAATTGCCATGAC 59.195 38.462 6.97 0.00 39.39 3.06
2966 9953 3.629438 TGCATATGAATTGCCATGACG 57.371 42.857 6.97 0.00 39.39 4.35
2967 9954 2.950975 TGCATATGAATTGCCATGACGT 59.049 40.909 6.97 0.00 39.39 4.34
2968 9955 3.380954 TGCATATGAATTGCCATGACGTT 59.619 39.130 6.97 0.00 39.39 3.99
2969 9956 4.142204 TGCATATGAATTGCCATGACGTTT 60.142 37.500 6.97 0.00 39.39 3.60
2970 9957 5.067023 TGCATATGAATTGCCATGACGTTTA 59.933 36.000 6.97 0.00 39.39 2.01
2971 9958 5.399301 GCATATGAATTGCCATGACGTTTAC 59.601 40.000 6.97 0.00 33.95 2.01
2972 9959 6.493978 CATATGAATTGCCATGACGTTTACA 58.506 36.000 0.00 0.00 0.00 2.41
2973 9960 4.153958 TGAATTGCCATGACGTTTACAC 57.846 40.909 0.00 0.00 0.00 2.90
2974 9961 3.818210 TGAATTGCCATGACGTTTACACT 59.182 39.130 0.00 0.00 0.00 3.55
2975 9962 3.829886 ATTGCCATGACGTTTACACTG 57.170 42.857 0.00 0.00 0.00 3.66
2976 9963 2.535012 TGCCATGACGTTTACACTGA 57.465 45.000 0.00 0.00 0.00 3.41
2977 9964 2.839975 TGCCATGACGTTTACACTGAA 58.160 42.857 0.00 0.00 0.00 3.02
2978 9965 2.805671 TGCCATGACGTTTACACTGAAG 59.194 45.455 0.00 0.00 0.00 3.02
2979 9966 2.806244 GCCATGACGTTTACACTGAAGT 59.194 45.455 0.00 0.00 0.00 3.01
2980 9967 3.250040 GCCATGACGTTTACACTGAAGTT 59.750 43.478 0.00 0.00 0.00 2.66
2981 9968 4.772434 CCATGACGTTTACACTGAAGTTG 58.228 43.478 0.00 0.00 0.00 3.16
2982 9969 3.936902 TGACGTTTACACTGAAGTTGC 57.063 42.857 0.00 0.00 0.00 4.17
2983 9970 2.610374 TGACGTTTACACTGAAGTTGCC 59.390 45.455 0.00 0.00 0.00 4.52
2984 9971 2.610374 GACGTTTACACTGAAGTTGCCA 59.390 45.455 0.00 0.00 0.00 4.92
2985 9972 3.211045 ACGTTTACACTGAAGTTGCCAT 58.789 40.909 0.00 0.00 0.00 4.40
2986 9973 3.003275 ACGTTTACACTGAAGTTGCCATG 59.997 43.478 0.00 0.00 0.00 3.66
2987 9974 3.249799 CGTTTACACTGAAGTTGCCATGA 59.750 43.478 0.00 0.00 0.00 3.07
2988 9975 4.083324 CGTTTACACTGAAGTTGCCATGAT 60.083 41.667 0.00 0.00 0.00 2.45
2989 9976 5.121611 CGTTTACACTGAAGTTGCCATGATA 59.878 40.000 0.00 0.00 0.00 2.15
2990 9977 6.183360 CGTTTACACTGAAGTTGCCATGATAT 60.183 38.462 0.00 0.00 0.00 1.63
2991 9978 6.682423 TTACACTGAAGTTGCCATGATATG 57.318 37.500 0.00 0.00 0.00 1.78
2992 9979 4.592942 ACACTGAAGTTGCCATGATATGT 58.407 39.130 0.00 0.00 0.00 2.29
2993 9980 5.012239 ACACTGAAGTTGCCATGATATGTT 58.988 37.500 0.00 0.00 0.00 2.71
2994 9981 5.477984 ACACTGAAGTTGCCATGATATGTTT 59.522 36.000 0.00 0.00 0.00 2.83
2995 9982 6.032094 CACTGAAGTTGCCATGATATGTTTC 58.968 40.000 0.00 0.00 0.00 2.78
2996 9983 5.711506 ACTGAAGTTGCCATGATATGTTTCA 59.288 36.000 0.00 0.00 0.00 2.69
2997 9984 6.127814 ACTGAAGTTGCCATGATATGTTTCAG 60.128 38.462 16.88 16.88 42.68 3.02
2998 9985 4.644103 AGTTGCCATGATATGTTTCAGC 57.356 40.909 0.00 0.00 0.00 4.26
2999 9986 4.275810 AGTTGCCATGATATGTTTCAGCT 58.724 39.130 0.00 0.00 0.00 4.24
3000 9987 5.439721 AGTTGCCATGATATGTTTCAGCTA 58.560 37.500 0.00 0.00 0.00 3.32
3001 9988 6.066690 AGTTGCCATGATATGTTTCAGCTAT 58.933 36.000 0.00 0.00 0.00 2.97
3002 9989 6.548622 AGTTGCCATGATATGTTTCAGCTATT 59.451 34.615 0.00 0.00 0.00 1.73
3003 9990 6.964807 TGCCATGATATGTTTCAGCTATTT 57.035 33.333 0.00 0.00 0.00 1.40
3004 9991 7.350744 TGCCATGATATGTTTCAGCTATTTT 57.649 32.000 0.00 0.00 0.00 1.82
3005 9992 7.428020 TGCCATGATATGTTTCAGCTATTTTC 58.572 34.615 0.00 0.00 0.00 2.29
3006 9993 7.286087 TGCCATGATATGTTTCAGCTATTTTCT 59.714 33.333 0.00 0.00 0.00 2.52
3007 9994 8.139989 GCCATGATATGTTTCAGCTATTTTCTT 58.860 33.333 0.00 0.00 0.00 2.52
3008 9995 9.674824 CCATGATATGTTTCAGCTATTTTCTTC 57.325 33.333 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
520 573 1.268283 GCCCCAGGAGTAGAAGCAGT 61.268 60.000 0.00 0.00 0.00 4.40
747 807 1.214367 GACAACCACGTTCACGATGT 58.786 50.000 6.30 5.58 43.02 3.06
911 977 2.037847 GGGCAACAATGGAGGCCT 59.962 61.111 3.86 3.86 45.68 5.19
1220 1294 0.666274 TTCGCTGTCGACATCCACAC 60.666 55.000 20.40 3.93 45.43 3.82
1343 1421 4.021631 CGCATGCCATAGCCGCAG 62.022 66.667 13.15 0.00 40.15 5.18
1455 4613 3.112263 ACGAGGGGAGAAACATCCATAA 58.888 45.455 0.00 0.00 41.52 1.90
1684 4843 1.002990 TCTCCACACATGCAGGCTG 60.003 57.895 10.94 10.94 0.00 4.85
1885 5074 5.490357 TCCTCAGAGATTTTTCCTCCAAGAT 59.510 40.000 0.00 0.00 0.00 2.40
1928 5117 2.496111 CGCCGGATCTAGAGTTAGAGT 58.504 52.381 5.05 0.00 39.21 3.24
2129 5326 3.005897 ACATATGGGTCTCAGTATCGCAC 59.994 47.826 7.80 0.00 0.00 5.34
2326 5548 1.069258 GCGTATACTGGCCTGACCC 59.931 63.158 17.64 0.38 37.83 4.46
2327 5549 1.000496 GTAGCGTATACTGGCCTGACC 60.000 57.143 17.64 0.04 39.84 4.02
2328 5550 1.955080 AGTAGCGTATACTGGCCTGAC 59.045 52.381 17.64 3.20 0.00 3.51
2329 5551 1.954382 CAGTAGCGTATACTGGCCTGA 59.046 52.381 17.64 0.27 40.76 3.86
2330 5552 1.954382 TCAGTAGCGTATACTGGCCTG 59.046 52.381 21.93 8.29 43.67 4.85
2331 5553 2.359981 TCAGTAGCGTATACTGGCCT 57.640 50.000 21.93 0.00 43.67 5.19
2332 5554 2.820787 AGATCAGTAGCGTATACTGGCC 59.179 50.000 21.93 16.02 43.67 5.36
2333 5555 3.502595 TGAGATCAGTAGCGTATACTGGC 59.497 47.826 21.93 16.47 43.67 4.85
2334 5556 4.155099 CCTGAGATCAGTAGCGTATACTGG 59.845 50.000 21.93 10.34 43.67 4.00
2335 5557 4.155099 CCCTGAGATCAGTAGCGTATACTG 59.845 50.000 18.42 18.42 44.56 2.74
2336 5558 4.328536 CCCTGAGATCAGTAGCGTATACT 58.671 47.826 8.93 0.00 42.27 2.12
2337 5559 3.119779 GCCCTGAGATCAGTAGCGTATAC 60.120 52.174 8.93 0.00 42.27 1.47
2338 5560 3.082548 GCCCTGAGATCAGTAGCGTATA 58.917 50.000 8.93 0.00 42.27 1.47
2339 5561 1.889829 GCCCTGAGATCAGTAGCGTAT 59.110 52.381 8.93 0.00 42.27 3.06
2340 5562 1.133761 AGCCCTGAGATCAGTAGCGTA 60.134 52.381 8.93 0.00 42.59 4.42
2341 5563 0.396417 AGCCCTGAGATCAGTAGCGT 60.396 55.000 8.93 0.48 42.59 5.07
2342 5564 0.031857 CAGCCCTGAGATCAGTAGCG 59.968 60.000 8.93 4.92 42.59 4.26
2343 5565 1.118838 ACAGCCCTGAGATCAGTAGC 58.881 55.000 8.93 10.65 42.27 3.58
2344 5566 2.158986 CCAACAGCCCTGAGATCAGTAG 60.159 54.545 8.93 1.59 42.27 2.57
2345 5567 1.833630 CCAACAGCCCTGAGATCAGTA 59.166 52.381 8.93 0.00 42.27 2.74
2346 5568 0.617413 CCAACAGCCCTGAGATCAGT 59.383 55.000 8.93 0.00 42.27 3.41
2347 5569 0.747283 GCCAACAGCCCTGAGATCAG 60.747 60.000 1.69 2.72 43.40 2.90
2348 5570 1.300963 GCCAACAGCCCTGAGATCA 59.699 57.895 1.69 0.00 34.35 2.92
2349 5571 4.232310 GCCAACAGCCCTGAGATC 57.768 61.111 1.69 0.00 34.35 2.75
2358 5580 1.972660 ATCGGGTCTAGGCCAACAGC 61.973 60.000 16.93 0.00 42.60 4.40
2359 5581 0.179073 CATCGGGTCTAGGCCAACAG 60.179 60.000 16.93 3.34 0.00 3.16
2371 5593 1.207329 GGAAAGTACTCAGCATCGGGT 59.793 52.381 0.00 0.00 0.00 5.28
2377 5599 1.068748 GTCGTCGGAAAGTACTCAGCA 60.069 52.381 0.00 0.00 0.00 4.41
2391 5613 3.957027 TTGGTCATCGCCGTCGTCG 62.957 63.158 0.00 0.00 36.96 5.12
2393 5615 2.431942 GTTGGTCATCGCCGTCGT 60.432 61.111 0.00 0.00 36.96 4.34
2394 5616 3.541831 CGTTGGTCATCGCCGTCG 61.542 66.667 0.00 0.00 0.00 5.12
2396 5618 2.431942 GTCGTTGGTCATCGCCGT 60.432 61.111 0.00 0.00 0.00 5.68
2397 5619 3.541831 CGTCGTTGGTCATCGCCG 61.542 66.667 0.00 0.00 0.00 6.46
2399 5621 1.414897 GTTCGTCGTTGGTCATCGC 59.585 57.895 0.00 0.00 0.00 4.58
2400 5622 0.726787 TCGTTCGTCGTTGGTCATCG 60.727 55.000 0.00 0.00 40.80 3.84
2401 5623 0.706729 GTCGTTCGTCGTTGGTCATC 59.293 55.000 0.00 0.00 40.80 2.92
2402 5624 1.000233 CGTCGTTCGTCGTTGGTCAT 61.000 55.000 4.05 0.00 40.80 3.06
2403 5625 1.655046 CGTCGTTCGTCGTTGGTCA 60.655 57.895 4.05 0.00 40.80 4.02
2408 9395 0.041047 TGTCATCGTCGTTCGTCGTT 60.041 50.000 10.78 1.60 40.80 3.85
2423 9410 1.942657 GTCAGCAAGCTTTGTCTGTCA 59.057 47.619 15.61 0.87 36.69 3.58
2453 9440 1.529865 GTCTCGGCGTAAAAGCAACTT 59.470 47.619 6.85 0.00 39.27 2.66
2501 9488 4.380531 TGCTAGCTTTGCACATAGGTATC 58.619 43.478 17.23 0.00 35.31 2.24
2565 9552 4.062293 TGTGTTGTGTATCTACCAAGCAC 58.938 43.478 0.00 0.00 0.00 4.40
2585 9572 1.202521 TCGATCAGCTGTTGTGTGTGT 60.203 47.619 14.67 0.00 0.00 3.72
2589 9576 1.276138 TGGATCGATCAGCTGTTGTGT 59.724 47.619 25.93 0.00 0.00 3.72
2612 9599 1.795872 CTTCGTACGCATGTGTTTCCA 59.204 47.619 18.51 0.00 0.00 3.53
2689 9676 1.569493 CACACGTGTGGCAGTTAGC 59.431 57.895 35.65 0.00 42.10 3.09
2698 9685 2.253758 CCTTCCTGCCACACGTGTG 61.254 63.158 36.13 36.13 45.23 3.82
2699 9686 2.111043 CCTTCCTGCCACACGTGT 59.889 61.111 17.22 17.22 0.00 4.49
2700 9687 2.669569 CCCTTCCTGCCACACGTG 60.670 66.667 15.48 15.48 0.00 4.49
2701 9688 2.847234 TCCCTTCCTGCCACACGT 60.847 61.111 0.00 0.00 0.00 4.49
2702 9689 2.046892 CTCCCTTCCTGCCACACG 60.047 66.667 0.00 0.00 0.00 4.49
2703 9690 1.003233 GTCTCCCTTCCTGCCACAC 60.003 63.158 0.00 0.00 0.00 3.82
2704 9691 2.583441 CGTCTCCCTTCCTGCCACA 61.583 63.158 0.00 0.00 0.00 4.17
2705 9692 1.255667 TACGTCTCCCTTCCTGCCAC 61.256 60.000 0.00 0.00 0.00 5.01
2706 9693 1.077805 TACGTCTCCCTTCCTGCCA 59.922 57.895 0.00 0.00 0.00 4.92
2707 9694 0.971447 AGTACGTCTCCCTTCCTGCC 60.971 60.000 0.00 0.00 0.00 4.85
2708 9695 1.404748 GTAGTACGTCTCCCTTCCTGC 59.595 57.143 0.00 0.00 0.00 4.85
2709 9696 2.422832 GTGTAGTACGTCTCCCTTCCTG 59.577 54.545 0.00 0.00 0.00 3.86
2710 9697 2.720915 GTGTAGTACGTCTCCCTTCCT 58.279 52.381 0.00 0.00 0.00 3.36
2722 9709 8.446273 TCTGTTTACATTAGAGACGTGTAGTAC 58.554 37.037 0.00 0.00 30.79 2.73
2723 9710 8.552083 TCTGTTTACATTAGAGACGTGTAGTA 57.448 34.615 0.00 0.00 30.79 1.82
2724 9711 7.444629 TCTGTTTACATTAGAGACGTGTAGT 57.555 36.000 0.00 0.00 30.79 2.73
2725 9712 8.799091 CAATCTGTTTACATTAGAGACGTGTAG 58.201 37.037 0.00 0.00 30.79 2.74
2726 9713 8.301720 ACAATCTGTTTACATTAGAGACGTGTA 58.698 33.333 0.00 0.00 0.00 2.90
2727 9714 7.152645 ACAATCTGTTTACATTAGAGACGTGT 58.847 34.615 0.00 0.00 0.00 4.49
2728 9715 7.328493 TGACAATCTGTTTACATTAGAGACGTG 59.672 37.037 0.00 0.00 0.00 4.49
2729 9716 7.328737 GTGACAATCTGTTTACATTAGAGACGT 59.671 37.037 0.00 0.00 0.00 4.34
2730 9717 7.461546 CGTGACAATCTGTTTACATTAGAGACG 60.462 40.741 0.00 0.00 0.00 4.18
2731 9718 7.328737 ACGTGACAATCTGTTTACATTAGAGAC 59.671 37.037 0.00 0.00 0.00 3.36
2732 9719 7.375834 ACGTGACAATCTGTTTACATTAGAGA 58.624 34.615 0.00 0.00 0.00 3.10
2733 9720 7.328493 TGACGTGACAATCTGTTTACATTAGAG 59.672 37.037 0.00 0.00 0.00 2.43
2734 9721 7.149307 TGACGTGACAATCTGTTTACATTAGA 58.851 34.615 0.00 0.00 0.00 2.10
2735 9722 7.346208 TGACGTGACAATCTGTTTACATTAG 57.654 36.000 0.00 0.00 0.00 1.73
2736 9723 7.201401 CGATGACGTGACAATCTGTTTACATTA 60.201 37.037 0.00 0.00 34.56 1.90
2737 9724 6.401047 CGATGACGTGACAATCTGTTTACATT 60.401 38.462 0.00 0.00 34.56 2.71
2738 9725 5.062183 CGATGACGTGACAATCTGTTTACAT 59.938 40.000 0.00 0.00 34.56 2.29
2739 9726 4.384547 CGATGACGTGACAATCTGTTTACA 59.615 41.667 0.00 0.00 34.56 2.41
2740 9727 4.721226 GCGATGACGTGACAATCTGTTTAC 60.721 45.833 0.00 0.00 41.98 2.01
2741 9728 3.366724 GCGATGACGTGACAATCTGTTTA 59.633 43.478 0.00 0.00 41.98 2.01
2742 9729 2.157668 GCGATGACGTGACAATCTGTTT 59.842 45.455 0.00 0.00 41.98 2.83
2743 9730 1.726791 GCGATGACGTGACAATCTGTT 59.273 47.619 0.00 0.00 41.98 3.16
2744 9731 1.336795 TGCGATGACGTGACAATCTGT 60.337 47.619 0.00 0.00 41.98 3.41
2745 9732 1.349234 TGCGATGACGTGACAATCTG 58.651 50.000 0.00 0.00 41.98 2.90
2746 9733 1.929169 CATGCGATGACGTGACAATCT 59.071 47.619 0.00 0.00 41.98 2.40
2747 9734 1.593070 GCATGCGATGACGTGACAATC 60.593 52.381 0.00 0.00 41.98 2.67
2748 9735 0.374758 GCATGCGATGACGTGACAAT 59.625 50.000 0.00 0.00 41.98 2.71
2749 9736 0.948141 TGCATGCGATGACGTGACAA 60.948 50.000 14.09 0.00 41.98 3.18
2750 9737 0.740516 ATGCATGCGATGACGTGACA 60.741 50.000 14.09 0.00 41.98 3.58
2751 9738 0.315625 CATGCATGCGATGACGTGAC 60.316 55.000 14.93 0.00 41.98 3.67
2752 9739 2.008328 CATGCATGCGATGACGTGA 58.992 52.632 14.93 0.00 41.98 4.35
2753 9740 1.653232 GCATGCATGCGATGACGTG 60.653 57.895 33.99 3.92 44.67 4.49
2754 9741 2.711311 GCATGCATGCGATGACGT 59.289 55.556 33.99 0.00 44.67 4.34
2766 9753 8.376028 AATCTAAAAAGATTCCTGCATGCATGC 61.376 37.037 38.71 38.71 42.81 4.06
2767 9754 5.898174 TCTAAAAAGATTCCTGCATGCATG 58.102 37.500 22.97 22.70 0.00 4.06
2768 9755 6.726490 ATCTAAAAAGATTCCTGCATGCAT 57.274 33.333 22.97 5.92 0.00 3.96
2769 9756 6.534475 AATCTAAAAAGATTCCTGCATGCA 57.466 33.333 21.29 21.29 33.66 3.96
2770 9757 7.546667 TGAAAATCTAAAAAGATTCCTGCATGC 59.453 33.333 11.82 11.82 37.52 4.06
2771 9758 8.991243 TGAAAATCTAAAAAGATTCCTGCATG 57.009 30.769 1.35 0.00 37.52 4.06
2772 9759 8.810041 ACTGAAAATCTAAAAAGATTCCTGCAT 58.190 29.630 1.35 0.00 37.52 3.96
2773 9760 8.181904 ACTGAAAATCTAAAAAGATTCCTGCA 57.818 30.769 1.35 0.00 37.52 4.41
2774 9761 9.481340 AAACTGAAAATCTAAAAAGATTCCTGC 57.519 29.630 1.35 0.00 37.52 4.85
2807 9794 9.601971 CGGATTTTTCGTTTAAGAGATAAAACA 57.398 29.630 0.00 0.00 35.33 2.83
2808 9795 9.815936 TCGGATTTTTCGTTTAAGAGATAAAAC 57.184 29.630 0.00 0.00 35.33 2.43
2811 9798 9.982291 CAATCGGATTTTTCGTTTAAGAGATAA 57.018 29.630 0.00 0.00 0.00 1.75
2812 9799 9.373603 TCAATCGGATTTTTCGTTTAAGAGATA 57.626 29.630 0.00 0.00 0.00 1.98
2813 9800 8.263940 TCAATCGGATTTTTCGTTTAAGAGAT 57.736 30.769 0.00 0.00 0.00 2.75
2814 9801 7.661127 TCAATCGGATTTTTCGTTTAAGAGA 57.339 32.000 0.00 0.00 0.00 3.10
2815 9802 8.722342 TTTCAATCGGATTTTTCGTTTAAGAG 57.278 30.769 0.00 0.00 0.00 2.85
2816 9803 9.685828 ATTTTCAATCGGATTTTTCGTTTAAGA 57.314 25.926 0.00 0.00 0.00 2.10
2817 9804 9.937577 GATTTTCAATCGGATTTTTCGTTTAAG 57.062 29.630 0.00 0.00 0.00 1.85
2818 9805 8.917655 GGATTTTCAATCGGATTTTTCGTTTAA 58.082 29.630 0.00 0.00 0.00 1.52
2819 9806 7.271653 CGGATTTTCAATCGGATTTTTCGTTTA 59.728 33.333 0.00 0.00 0.00 2.01
2820 9807 6.088883 CGGATTTTCAATCGGATTTTTCGTTT 59.911 34.615 0.00 0.00 0.00 3.60
2821 9808 5.571357 CGGATTTTCAATCGGATTTTTCGTT 59.429 36.000 0.00 0.00 0.00 3.85
2822 9809 5.092781 CGGATTTTCAATCGGATTTTTCGT 58.907 37.500 0.00 0.00 0.00 3.85
2823 9810 5.092781 ACGGATTTTCAATCGGATTTTTCG 58.907 37.500 0.00 2.07 0.00 3.46
2824 9811 6.944557 AACGGATTTTCAATCGGATTTTTC 57.055 33.333 0.00 0.00 0.00 2.29
2825 9812 7.722795 AAAACGGATTTTCAATCGGATTTTT 57.277 28.000 0.00 5.70 32.29 1.94
2838 9825 6.876789 GGGATTTAATGGTGAAAACGGATTTT 59.123 34.615 0.00 0.00 40.83 1.82
2839 9826 6.212589 AGGGATTTAATGGTGAAAACGGATTT 59.787 34.615 0.00 0.00 0.00 2.17
2840 9827 5.719563 AGGGATTTAATGGTGAAAACGGATT 59.280 36.000 0.00 0.00 0.00 3.01
2841 9828 5.269189 AGGGATTTAATGGTGAAAACGGAT 58.731 37.500 0.00 0.00 0.00 4.18
2842 9829 4.668636 AGGGATTTAATGGTGAAAACGGA 58.331 39.130 0.00 0.00 0.00 4.69
2843 9830 4.438200 CGAGGGATTTAATGGTGAAAACGG 60.438 45.833 0.00 0.00 0.00 4.44
2844 9831 4.658071 CGAGGGATTTAATGGTGAAAACG 58.342 43.478 0.00 0.00 0.00 3.60
2845 9832 4.421058 GCGAGGGATTTAATGGTGAAAAC 58.579 43.478 0.00 0.00 0.00 2.43
2846 9833 3.127895 CGCGAGGGATTTAATGGTGAAAA 59.872 43.478 0.00 0.00 0.00 2.29
2847 9834 2.680841 CGCGAGGGATTTAATGGTGAAA 59.319 45.455 0.00 0.00 0.00 2.69
2848 9835 2.093394 TCGCGAGGGATTTAATGGTGAA 60.093 45.455 3.71 0.00 0.00 3.18
2849 9836 1.483004 TCGCGAGGGATTTAATGGTGA 59.517 47.619 3.71 0.00 0.00 4.02
2850 9837 1.948104 TCGCGAGGGATTTAATGGTG 58.052 50.000 3.71 0.00 0.00 4.17
2851 9838 2.104111 TCATCGCGAGGGATTTAATGGT 59.896 45.455 21.76 0.00 0.00 3.55
2852 9839 2.738846 CTCATCGCGAGGGATTTAATGG 59.261 50.000 21.76 0.53 38.18 3.16
2853 9840 3.653344 TCTCATCGCGAGGGATTTAATG 58.347 45.455 21.76 7.60 42.55 1.90
2854 9841 4.221703 AGATCTCATCGCGAGGGATTTAAT 59.778 41.667 21.76 8.75 42.55 1.40
2855 9842 3.574396 AGATCTCATCGCGAGGGATTTAA 59.426 43.478 21.76 0.00 42.55 1.52
2856 9843 3.157881 AGATCTCATCGCGAGGGATTTA 58.842 45.455 21.76 0.00 42.55 1.40
2857 9844 1.967066 AGATCTCATCGCGAGGGATTT 59.033 47.619 21.76 13.93 42.55 2.17
2858 9845 1.626686 AGATCTCATCGCGAGGGATT 58.373 50.000 21.76 5.43 42.55 3.01
2859 9846 1.543802 GAAGATCTCATCGCGAGGGAT 59.456 52.381 21.76 20.51 42.55 3.85
2860 9847 0.955178 GAAGATCTCATCGCGAGGGA 59.045 55.000 21.76 16.72 42.55 4.20
2861 9848 0.670706 TGAAGATCTCATCGCGAGGG 59.329 55.000 21.76 12.63 42.55 4.30
2862 9849 2.498807 TTGAAGATCTCATCGCGAGG 57.501 50.000 15.81 15.81 42.55 4.63
2863 9850 3.862267 AGTTTTGAAGATCTCATCGCGAG 59.138 43.478 16.66 7.11 43.80 5.03
2864 9851 3.849911 AGTTTTGAAGATCTCATCGCGA 58.150 40.909 13.09 13.09 32.78 5.87
2865 9852 5.037385 TCTAGTTTTGAAGATCTCATCGCG 58.963 41.667 0.00 0.00 32.78 5.87
2866 9853 6.145371 GGATCTAGTTTTGAAGATCTCATCGC 59.855 42.308 11.05 0.00 37.77 4.58
2867 9854 6.644592 GGGATCTAGTTTTGAAGATCTCATCG 59.355 42.308 11.05 0.00 37.98 3.84
2868 9855 7.504403 TGGGATCTAGTTTTGAAGATCTCATC 58.496 38.462 10.15 0.00 41.63 2.92
2869 9856 7.443302 TGGGATCTAGTTTTGAAGATCTCAT 57.557 36.000 10.15 0.00 41.63 2.90
2870 9857 6.874278 TGGGATCTAGTTTTGAAGATCTCA 57.126 37.500 10.15 10.15 43.51 3.27
2871 9858 7.278875 ACATGGGATCTAGTTTTGAAGATCTC 58.721 38.462 11.05 8.38 38.41 2.75
2872 9859 7.205515 ACATGGGATCTAGTTTTGAAGATCT 57.794 36.000 11.05 0.00 37.77 2.75
2873 9860 7.554118 TCAACATGGGATCTAGTTTTGAAGATC 59.446 37.037 0.00 4.15 37.15 2.75
2874 9861 7.405292 TCAACATGGGATCTAGTTTTGAAGAT 58.595 34.615 0.00 0.00 0.00 2.40
2875 9862 6.778821 TCAACATGGGATCTAGTTTTGAAGA 58.221 36.000 0.00 0.00 0.00 2.87
2876 9863 7.636150 ATCAACATGGGATCTAGTTTTGAAG 57.364 36.000 0.00 0.00 0.00 3.02
2877 9864 9.123902 CATATCAACATGGGATCTAGTTTTGAA 57.876 33.333 5.52 0.00 0.00 2.69
2878 9865 8.274322 ACATATCAACATGGGATCTAGTTTTGA 58.726 33.333 5.52 0.00 0.00 2.69
2879 9866 8.455903 ACATATCAACATGGGATCTAGTTTTG 57.544 34.615 5.52 0.00 0.00 2.44
2880 9867 9.479549 AAACATATCAACATGGGATCTAGTTTT 57.520 29.630 5.52 0.00 0.00 2.43
2881 9868 9.479549 AAAACATATCAACATGGGATCTAGTTT 57.520 29.630 5.52 11.05 30.93 2.66
2882 9869 8.906867 CAAAACATATCAACATGGGATCTAGTT 58.093 33.333 5.52 6.83 0.00 2.24
2883 9870 8.274322 TCAAAACATATCAACATGGGATCTAGT 58.726 33.333 5.52 1.99 0.00 2.57
2884 9871 8.681486 TCAAAACATATCAACATGGGATCTAG 57.319 34.615 5.52 0.00 0.00 2.43
2885 9872 9.070179 CATCAAAACATATCAACATGGGATCTA 57.930 33.333 5.52 0.00 0.00 1.98
2886 9873 7.781219 TCATCAAAACATATCAACATGGGATCT 59.219 33.333 5.52 0.00 0.00 2.75
2887 9874 7.944061 TCATCAAAACATATCAACATGGGATC 58.056 34.615 5.52 0.00 0.00 3.36
2888 9875 7.901283 TCATCAAAACATATCAACATGGGAT 57.099 32.000 0.00 2.37 0.00 3.85
2889 9876 7.715266 TTCATCAAAACATATCAACATGGGA 57.285 32.000 0.00 0.00 0.00 4.37
2890 9877 8.951787 AATTCATCAAAACATATCAACATGGG 57.048 30.769 0.00 0.00 0.00 4.00
2918 9905 8.729805 AGACATGGCAACTTTTAATTCAAAAA 57.270 26.923 0.00 0.00 35.71 1.94
2919 9906 9.995003 ATAGACATGGCAACTTTTAATTCAAAA 57.005 25.926 0.00 0.00 34.89 2.44
2920 9907 9.995003 AATAGACATGGCAACTTTTAATTCAAA 57.005 25.926 0.00 0.00 37.61 2.69
2921 9908 9.421806 CAATAGACATGGCAACTTTTAATTCAA 57.578 29.630 0.00 0.00 37.61 2.69
2922 9909 7.545265 GCAATAGACATGGCAACTTTTAATTCA 59.455 33.333 0.00 0.00 30.66 2.57
2923 9910 7.545265 TGCAATAGACATGGCAACTTTTAATTC 59.455 33.333 0.00 0.00 38.19 2.17
2924 9911 7.385267 TGCAATAGACATGGCAACTTTTAATT 58.615 30.769 0.00 0.00 38.19 1.40
2925 9912 6.934056 TGCAATAGACATGGCAACTTTTAAT 58.066 32.000 0.00 0.00 38.19 1.40
2926 9913 6.338214 TGCAATAGACATGGCAACTTTTAA 57.662 33.333 0.00 0.00 38.19 1.52
2927 9914 5.973899 TGCAATAGACATGGCAACTTTTA 57.026 34.783 0.00 0.00 38.19 1.52
2928 9915 4.870123 TGCAATAGACATGGCAACTTTT 57.130 36.364 0.00 0.00 38.19 2.27
2929 9916 6.321945 TCATATGCAATAGACATGGCAACTTT 59.678 34.615 0.00 0.00 44.38 2.66
2930 9917 5.829391 TCATATGCAATAGACATGGCAACTT 59.171 36.000 0.00 0.00 44.38 2.66
2931 9918 5.379187 TCATATGCAATAGACATGGCAACT 58.621 37.500 0.00 0.00 44.38 3.16
2932 9919 5.694231 TCATATGCAATAGACATGGCAAC 57.306 39.130 0.00 0.00 44.38 4.17
2933 9920 6.904463 ATTCATATGCAATAGACATGGCAA 57.096 33.333 0.00 0.00 44.38 4.52
2934 9921 6.683715 CAATTCATATGCAATAGACATGGCA 58.316 36.000 0.00 0.00 45.29 4.92
2935 9922 5.575606 GCAATTCATATGCAATAGACATGGC 59.424 40.000 0.00 0.00 43.29 4.40
2936 9923 6.097356 GGCAATTCATATGCAATAGACATGG 58.903 40.000 0.00 0.00 45.60 3.66
2937 9924 6.683715 TGGCAATTCATATGCAATAGACATG 58.316 36.000 0.00 0.00 45.60 3.21
2938 9925 6.904463 TGGCAATTCATATGCAATAGACAT 57.096 33.333 0.00 0.00 45.60 3.06
2939 9926 6.490721 TCATGGCAATTCATATGCAATAGACA 59.509 34.615 0.00 0.00 45.60 3.41
2940 9927 6.805271 GTCATGGCAATTCATATGCAATAGAC 59.195 38.462 0.00 2.79 45.60 2.59
2941 9928 6.348704 CGTCATGGCAATTCATATGCAATAGA 60.349 38.462 0.00 0.00 45.60 1.98
2942 9929 5.798434 CGTCATGGCAATTCATATGCAATAG 59.202 40.000 0.00 0.00 45.60 1.73
2943 9930 5.241285 ACGTCATGGCAATTCATATGCAATA 59.759 36.000 0.00 0.00 45.60 1.90
2944 9931 4.038282 ACGTCATGGCAATTCATATGCAAT 59.962 37.500 0.00 0.00 45.60 3.56
2945 9932 3.380954 ACGTCATGGCAATTCATATGCAA 59.619 39.130 0.00 0.00 45.60 4.08
2946 9933 2.950975 ACGTCATGGCAATTCATATGCA 59.049 40.909 0.00 0.00 45.60 3.96
2947 9934 3.631145 ACGTCATGGCAATTCATATGC 57.369 42.857 0.00 0.00 43.08 3.14
2948 9935 6.414694 GTGTAAACGTCATGGCAATTCATATG 59.585 38.462 0.00 0.00 0.00 1.78
2949 9936 6.318648 AGTGTAAACGTCATGGCAATTCATAT 59.681 34.615 0.00 0.00 0.00 1.78
2950 9937 5.645929 AGTGTAAACGTCATGGCAATTCATA 59.354 36.000 0.00 0.00 0.00 2.15
2951 9938 4.458989 AGTGTAAACGTCATGGCAATTCAT 59.541 37.500 0.00 0.00 0.00 2.57
2952 9939 3.818210 AGTGTAAACGTCATGGCAATTCA 59.182 39.130 0.00 0.00 0.00 2.57
2953 9940 4.083537 TCAGTGTAAACGTCATGGCAATTC 60.084 41.667 0.00 0.00 0.00 2.17
2954 9941 3.818210 TCAGTGTAAACGTCATGGCAATT 59.182 39.130 0.00 0.00 0.00 2.32
2955 9942 3.407698 TCAGTGTAAACGTCATGGCAAT 58.592 40.909 0.00 0.00 0.00 3.56
2956 9943 2.839975 TCAGTGTAAACGTCATGGCAA 58.160 42.857 0.00 0.00 0.00 4.52
2957 9944 2.535012 TCAGTGTAAACGTCATGGCA 57.465 45.000 0.00 0.00 0.00 4.92
2958 9945 2.806244 ACTTCAGTGTAAACGTCATGGC 59.194 45.455 0.00 0.00 0.00 4.40
2959 9946 4.772434 CAACTTCAGTGTAAACGTCATGG 58.228 43.478 0.00 0.00 0.00 3.66
2960 9947 4.211389 GCAACTTCAGTGTAAACGTCATG 58.789 43.478 0.00 0.00 0.00 3.07
2961 9948 3.250040 GGCAACTTCAGTGTAAACGTCAT 59.750 43.478 0.00 0.00 0.00 3.06
2962 9949 2.610374 GGCAACTTCAGTGTAAACGTCA 59.390 45.455 0.00 0.00 0.00 4.35
2963 9950 2.610374 TGGCAACTTCAGTGTAAACGTC 59.390 45.455 0.00 0.00 37.61 4.34
2964 9951 2.634600 TGGCAACTTCAGTGTAAACGT 58.365 42.857 0.00 0.00 37.61 3.99
2965 9952 3.249799 TCATGGCAACTTCAGTGTAAACG 59.750 43.478 0.00 0.00 37.61 3.60
2966 9953 4.829064 TCATGGCAACTTCAGTGTAAAC 57.171 40.909 0.00 0.00 37.61 2.01
2967 9954 6.658816 ACATATCATGGCAACTTCAGTGTAAA 59.341 34.615 0.00 0.00 37.61 2.01
2968 9955 6.179756 ACATATCATGGCAACTTCAGTGTAA 58.820 36.000 0.00 0.00 37.61 2.41
2969 9956 5.744171 ACATATCATGGCAACTTCAGTGTA 58.256 37.500 0.00 0.00 37.61 2.90
2970 9957 4.592942 ACATATCATGGCAACTTCAGTGT 58.407 39.130 0.00 0.00 37.61 3.55
2971 9958 5.571784 AACATATCATGGCAACTTCAGTG 57.428 39.130 0.00 0.00 37.61 3.66
2972 9959 5.711506 TGAAACATATCATGGCAACTTCAGT 59.288 36.000 0.00 0.00 37.61 3.41
2973 9960 6.198650 TGAAACATATCATGGCAACTTCAG 57.801 37.500 0.00 0.00 37.61 3.02
2974 9961 5.393352 GCTGAAACATATCATGGCAACTTCA 60.393 40.000 0.00 0.00 37.61 3.02
2975 9962 5.039333 GCTGAAACATATCATGGCAACTTC 58.961 41.667 0.00 0.00 37.61 3.01
2976 9963 4.708421 AGCTGAAACATATCATGGCAACTT 59.292 37.500 0.00 0.00 37.61 2.66
2977 9964 4.275810 AGCTGAAACATATCATGGCAACT 58.724 39.130 0.00 0.00 37.61 3.16
2978 9965 4.644103 AGCTGAAACATATCATGGCAAC 57.356 40.909 0.00 0.00 33.60 4.17
2979 9966 6.964807 AATAGCTGAAACATATCATGGCAA 57.035 33.333 0.00 0.00 33.60 4.52
2980 9967 6.964807 AAATAGCTGAAACATATCATGGCA 57.035 33.333 0.00 0.00 33.60 4.92
2981 9968 7.655490 AGAAAATAGCTGAAACATATCATGGC 58.345 34.615 0.00 0.00 33.60 4.40
2982 9969 9.674824 GAAGAAAATAGCTGAAACATATCATGG 57.325 33.333 0.00 0.00 33.60 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.