AutoCloner

Multiple sequence alignment - TraesCS7B01G026700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G026700	chr7B	100.000	3935	0	0	1	3935	25656234	25652300	0.000000e+00	7267
1	TraesCS7B01G026700	chr7B	83.133	2834	393	48	456	3243	25632306	25629512	0.000000e+00	2507
2	TraesCS7B01G026700	chr7B	86.335	1427	179	10	1657	3080	25887589	25889002	0.000000e+00	1541
3	TraesCS7B01G026700	chr7B	88.602	658	71	3	2303	2958	25663474	25662819	0.000000e+00	797
4	TraesCS7B01G026700	chr7B	81.922	874	155	1	637	1507	25886602	25887475	0.000000e+00	736
5	TraesCS7B01G026700	chr7B	85.829	621	86	2	1652	2271	25664089	25663470	0.000000e+00	658
6	TraesCS7B01G026700	chr7B	84.638	345	53	0	1163	1507	25664542	25664198	1.050000e-90	344
7	TraesCS7B01G026700	chr7B	86.102	295	30	6	2946	3231	25889624	25889916	1.370000e-79	307
8	TraesCS7B01G026700	chr7B	85.827	254	18	6	2983	3218	25889023	25889276	1.810000e-63	254
9	TraesCS7B01G026700	chr7B	83.969	131	20	1	1	130	483029775	483029905	1.480000e-24	124
10	TraesCS7B01G026700	chr7D	96.878	3587	76	6	1	3586	78303063	78299512	0.000000e+00	5971
11	TraesCS7B01G026700	chr7D	84.460	2632	357	28	456	3050	78211139	78208523	0.000000e+00	2547
12	TraesCS7B01G026700	chr7D	87.065	1438	171	11	1652	3079	78308042	78306610	0.000000e+00	1611
13	TraesCS7B01G026700	chr7D	80.962	998	176	9	520	1507	78309144	78308151	0.000000e+00	778
14	TraesCS7B01G026700	chr7D	85.397	315	28	11	3628	3925	78305365	78305052	1.060000e-80	311
15	TraesCS7B01G026700	chr7D	84.906	318	32	8	2946	3247	78305986	78305669	1.370000e-79	307
16	TraesCS7B01G026700	chr7D	96.089	179	7	0	3757	3935	78293677	78293499	3.850000e-75	292
17	TraesCS7B01G026700	chr7D	94.475	181	1	1	3582	3762	78299470	78299299	1.800000e-68	270
18	TraesCS7B01G026700	chr7D	86.614	254	16	6	2983	3218	78306588	78306335	8.380000e-67	265
19	TraesCS7B01G026700	chr7D	83.793	290	21	12	3245	3532	78300107	78299842	6.530000e-63	252
20	TraesCS7B01G026700	chr7A	84.773	2837	368	36	443	3247	81769918	81767114	0.000000e+00	2787
21	TraesCS7B01G026700	chr7A	83.291	2783	394	38	506	3243	81642292	81639536	0.000000e+00	2497
22	TraesCS7B01G026700	chr7A	87.500	1312	155	7	1652	2955	81776918	81775608	0.000000e+00	1506
23	TraesCS7B01G026700	chr6B	87.903	124	14	1	5	127	550144451	550144328	1.140000e-30	145
24	TraesCS7B01G026700	chr4B	87.302	126	15	1	5	129	641180288	641180163	4.100000e-30	143
25	TraesCS7B01G026700	chr1D	86.400	125	16	1	5	128	460435335	460435211	6.860000e-28	135
26	TraesCS7B01G026700	chr1D	85.271	129	16	3	5	131	431453782	431453655	3.190000e-26	130
27	TraesCS7B01G026700	chr5B	86.555	119	15	1	11	129	662011635	662011752	3.190000e-26	130
28	TraesCS7B01G026700	chr3D	84.615	130	19	1	1	129	3200305	3200176	1.150000e-25	128
29	TraesCS7B01G026700	chr2B	86.441	118	15	1	1	117	36016108	36015991	1.150000e-25	128

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G026700	chr7B	25652300	25656234	3934	True	7267.000000	7267	100.000000	1	3935	1	chr7B.!!$R2	3934
1	TraesCS7B01G026700	chr7B	25629512	25632306	2794	True	2507.000000	2507	83.133000	456	3243	1	chr7B.!!$R1	2787
2	TraesCS7B01G026700	chr7B	25886602	25889916	3314	False	709.500000	1541	85.046500	637	3231	4	chr7B.!!$F2	2594
3	TraesCS7B01G026700	chr7B	25662819	25664542	1723	True	599.666667	797	86.356333	1163	2958	3	chr7B.!!$R3	1795
4	TraesCS7B01G026700	chr7D	78208523	78211139	2616	True	2547.000000	2547	84.460000	456	3050	1	chr7D.!!$R1	2594
5	TraesCS7B01G026700	chr7D	78299299	78303063	3764	True	2164.333333	5971	91.715333	1	3762	3	chr7D.!!$R3	3761
6	TraesCS7B01G026700	chr7D	78305052	78309144	4092	True	654.400000	1611	84.988800	520	3925	5	chr7D.!!$R4	3405
7	TraesCS7B01G026700	chr7A	81767114	81769918	2804	True	2787.000000	2787	84.773000	443	3247	1	chr7A.!!$R2	2804
8	TraesCS7B01G026700	chr7A	81639536	81642292	2756	True	2497.000000	2497	83.291000	506	3243	1	chr7A.!!$R1	2737
9	TraesCS7B01G026700	chr7A	81775608	81776918	1310	True	1506.000000	1506	87.500000	1652	2955	1	chr7A.!!$R3	1303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
103	104	0.036010	AGCGTCTGAGGGATGGTTTG	60.036	55.000	0.0	0.00	38.37	2.93	F
597	628	1.134007	CATGGCATCAGCTACCTTGGA	60.134	52.381	0.0	0.00	41.70	3.53	F
1407	1450	1.680338	GACTCTGTGGCCAAAACAGT	58.320	50.000	18.5	13.11	44.42	3.55	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	End Stability	Orientation
1951	2000	0.951558	ACCAAACAACCAGCGATGAC	59.048	50.0	0.06	3.06	R
2250	2300	0.395312	TCTCGACAGAAAACCCCCAC	59.605	55.0	0.00	4.61	R
3277	4128	1.396653	CTATGGCAGGGAAAGGCTTG	58.603	55.0	0.00	4.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	5.691704	GCCTATAGGATGATACGAGGGATCT	60.692	48.000	23.61	0.00	37.39	2.75
54	55	3.741856	GTCACGTTTTTCCTTCTCTCTCC	59.258	47.826	0.00	0.00	0.00	3.71
57	58	2.739379	CGTTTTTCCTTCTCTCTCCTGC	59.261	50.000	0.00	0.00	0.00	4.85
103	104	0.036010	AGCGTCTGAGGGATGGTTTG	60.036	55.000	0.00	0.00	38.37	2.93
114	115	1.303317	ATGGTTTGAGGTGTCCGGC	60.303	57.895	0.00	0.00	0.00	6.13
154	155	6.422100	GCTCACACTATTGTATGAATGACGAT	59.578	38.462	0.00	0.00	33.30	3.73
364	365	1.206831	GCGCCGTTCAGTCCTTTTC	59.793	57.895	0.00	0.00	0.00	2.29
419	420	2.508928	CCACGTGAACCTGGGTGT	59.491	61.111	19.30	0.00	0.00	4.16
429	430	6.183360	ACGTGAACCTGGGTGTATATAACTAC	60.183	42.308	0.00	0.00	0.00	2.73
430	431	6.040166	CGTGAACCTGGGTGTATATAACTACT	59.960	42.308	0.00	0.00	0.00	2.57
431	432	7.229306	CGTGAACCTGGGTGTATATAACTACTA	59.771	40.741	0.00	0.00	0.00	1.82
484	506	8.561738	TGGATACATGAAAAGTAAGAAGAACC	57.438	34.615	0.00	0.00	46.17	3.62
485	507	7.333423	TGGATACATGAAAAGTAAGAAGAACCG	59.667	37.037	0.00	0.00	46.17	4.44
486	508	5.941948	ACATGAAAAGTAAGAAGAACCGG	57.058	39.130	0.00	0.00	0.00	5.28
487	509	5.617252	ACATGAAAAGTAAGAAGAACCGGA	58.383	37.500	9.46	0.00	0.00	5.14
488	510	5.469084	ACATGAAAAGTAAGAAGAACCGGAC	59.531	40.000	9.46	0.99	0.00	4.79
489	511	4.053295	TGAAAAGTAAGAAGAACCGGACG	58.947	43.478	9.46	0.00	0.00	4.79
490	512	2.738013	AAGTAAGAAGAACCGGACGG	57.262	50.000	9.46	9.56	42.03	4.79
559	581	4.762289	TTCCTTCTCTTGCTTATCTCCC	57.238	45.455	0.00	0.00	0.00	4.30
597	628	1.134007	CATGGCATCAGCTACCTTGGA	60.134	52.381	0.00	0.00	41.70	3.53
798	841	2.501492	CGTGAACGGTAGGGGATCT	58.499	57.895	0.00	0.00	35.37	2.75
815	858	3.181459	GGATCTAGGCTCTCCTTCCAAAC	60.181	52.174	0.00	0.00	40.66	2.93
875	918	1.877680	CGTCTGGAGCACCAACATGAA	60.878	52.381	3.90	0.00	46.32	2.57
1104	1147	8.263640	AGTGACAATCAGCTAAAACTCATCTAT	58.736	33.333	0.00	0.00	0.00	1.98
1191	1234	1.738830	TGCTTACAACCGTAGCCGC	60.739	57.895	0.00	0.00	0.00	6.53
1399	1442	3.615110	CGATATACATGGACTCTGTGGCC	60.615	52.174	0.00	0.00	46.75	5.36
1407	1450	1.680338	GACTCTGTGGCCAAAACAGT	58.320	50.000	18.50	13.11	44.42	3.55
1951	2000	4.093408	TGCTTTGCATCGAAGTAGCTTTAG	59.907	41.667	0.00	0.00	31.71	1.85
2328	2378	6.665680	AGAATGGTTCTTTAGACAGAGCTCTA	59.334	38.462	17.75	0.00	36.36	2.43
2564	2617	3.807209	GCACTGATGTTGTCAAGGGTACT	60.807	47.826	0.00	0.00	36.14	2.73
2746	2799	8.484641	TGTTAGATGCTCTACTGAAATTCTTG	57.515	34.615	0.00	0.00	0.00	3.02
2945	3681	7.220740	TCACTTGTGGAATAATGTTCAGTGTA	58.779	34.615	7.45	0.00	0.00	2.90
3051	3880	3.025262	GGAGACTCTCCGGATTTGTACT	58.975	50.000	3.57	0.00	41.08	2.73
3092	3928	4.311520	TGGAGTACTAGCCAGTAACTGA	57.688	45.455	0.00	0.00	38.98	3.41
3188	4036	4.414337	AATCAATCCTAGTGAGCCAGAC	57.586	45.455	0.00	0.00	0.00	3.51
3211	4059	7.611467	AGACTGATTGCAAACAGAAATATACCA	59.389	33.333	34.96	0.00	37.54	3.25
3277	4128	4.149396	GTGATGTTGCAGAAAAGTTGATGC	59.851	41.667	0.00	1.34	39.14	3.91
3296	4147	1.396653	CAAGCCTTTCCCTGCCATAG	58.603	55.000	0.00	0.00	0.00	2.23
3300	4151	1.202818	GCCTTTCCCTGCCATAGGTAG	60.203	57.143	0.00	0.00	45.80	3.18
3307	4158	2.158385	CCCTGCCATAGGTAGAGACTCT	60.158	54.545	10.47	10.47	45.80	3.24
3308	4159	3.153919	CCTGCCATAGGTAGAGACTCTC	58.846	54.545	8.64	0.00	42.00	3.20
3309	4160	3.153919	CTGCCATAGGTAGAGACTCTCC	58.846	54.545	8.64	10.20	37.63	3.71
3310	4161	2.158445	TGCCATAGGTAGAGACTCTCCC	60.158	54.545	8.64	7.18	0.00	4.30
3311	4162	2.785562	CCATAGGTAGAGACTCTCCCG	58.214	57.143	8.64	0.00	0.00	5.14
3312	4163	2.372504	CCATAGGTAGAGACTCTCCCGA	59.627	54.545	8.64	3.51	0.00	5.14
3313	4164	3.181442	CCATAGGTAGAGACTCTCCCGAA	60.181	52.174	8.64	1.41	0.00	4.30
3314	4165	2.721425	AGGTAGAGACTCTCCCGAAG	57.279	55.000	8.64	0.00	0.00	3.79
3353	4204	7.766278	TCAATAACTAGTTTCTCAAGATGGAGC	59.234	37.037	14.49	0.00	34.84	4.70
3421	4272	9.845740	ATGCTTAAGTCCATATAACATAACACA	57.154	29.630	4.02	0.00	0.00	3.72
3430	4281	9.407380	TCCATATAACATAACACATCTGCTTTT	57.593	29.630	0.00	0.00	0.00	2.27
3539	4390	5.471456	GGTTGGATCAATCTATAGCCAGTTG	59.529	44.000	0.00	0.00	0.00	3.16
3542	4393	6.759272	TGGATCAATCTATAGCCAGTTGTAC	58.241	40.000	0.00	0.00	0.00	2.90
3654	4721	3.878519	CTCGAGGTCGGCTCGGTC	61.879	72.222	3.91	0.00	43.66	4.79
3774	4847	0.907230	GAAGGAGGAGGAGGTGCTGT	60.907	60.000	0.00	0.00	0.00	4.40
3776	4849	1.197430	AGGAGGAGGAGGTGCTGTTG	61.197	60.000	0.00	0.00	0.00	3.33
3787	4860	2.047179	GCTGTTGGGGTCGGAGTC	60.047	66.667	0.00	0.00	0.00	3.36
3836	4909	4.798682	GGGGAAGGGGAGGAGCGA	62.799	72.222	0.00	0.00	0.00	4.93
3842	4918	3.213402	GGGGAGGAGCGAGTCGAG	61.213	72.222	18.61	0.00	0.00	4.04
3856	4932	4.824515	CGAGGAGGCCGGAGAGGT	62.825	72.222	5.05	0.00	43.70	3.85
3875	4951	0.181114	TAGTAGAAGGCGAGCGGGTA	59.819	55.000	0.00	0.00	0.00	3.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	3.564053	AGGAAAAACGTGACCCAACTA	57.436	42.857	0.00	0.00	0.00	2.24
84	85	0.036010	CAAACCATCCCTCAGACGCT	60.036	55.000	0.00	0.00	0.00	5.07
89	90	1.352352	ACACCTCAAACCATCCCTCAG	59.648	52.381	0.00	0.00	0.00	3.35
103	104	0.103208	CATCTACAGCCGGACACCTC	59.897	60.000	5.05	0.00	0.00	3.85
364	365	3.252974	CAGTCCTGCCCTAGTAGTTTG	57.747	52.381	0.00	0.00	0.00	2.93
419	420	8.003044	AGCACCTTGTGTCCTAGTAGTTATATA	58.997	37.037	0.00	0.00	35.75	0.86
429	430	2.100605	GGAAGCACCTTGTGTCCTAG	57.899	55.000	0.00	0.00	35.75	3.02
470	492	2.629617	TCCGTCCGGTTCTTCTTACTTT	59.370	45.455	0.00	0.00	36.47	2.66
471	493	2.242043	TCCGTCCGGTTCTTCTTACTT	58.758	47.619	0.00	0.00	36.47	2.24
472	494	1.915141	TCCGTCCGGTTCTTCTTACT	58.085	50.000	0.00	0.00	36.47	2.24
474	496	1.134907	GCATCCGTCCGGTTCTTCTTA	60.135	52.381	0.00	0.00	36.47	2.10
475	497	0.391263	GCATCCGTCCGGTTCTTCTT	60.391	55.000	0.00	0.00	36.47	2.52
477	499	1.814169	GGCATCCGTCCGGTTCTTC	60.814	63.158	0.00	0.00	36.47	2.87
478	500	1.910580	ATGGCATCCGTCCGGTTCTT	61.911	55.000	0.00	0.00	36.47	2.52
479	501	2.367202	ATGGCATCCGTCCGGTTCT	61.367	57.895	0.00	0.00	36.47	3.01
480	502	2.180204	CATGGCATCCGTCCGGTTC	61.180	63.158	0.00	0.00	36.47	3.62
481	503	2.124736	CATGGCATCCGTCCGGTT	60.125	61.111	0.00	0.00	36.47	4.44
482	504	3.080765	TCATGGCATCCGTCCGGT	61.081	61.111	0.00	0.00	36.47	5.28
483	505	2.588877	GTCATGGCATCCGTCCGG	60.589	66.667	0.00	0.00	0.00	5.14
484	506	2.588877	GGTCATGGCATCCGTCCG	60.589	66.667	0.00	0.00	0.00	4.79
485	507	1.149174	ATGGTCATGGCATCCGTCC	59.851	57.895	0.00	0.00	0.00	4.79
486	508	0.179048	TCATGGTCATGGCATCCGTC	60.179	55.000	10.61	0.00	39.24	4.79
487	509	0.179037	CTCATGGTCATGGCATCCGT	60.179	55.000	10.61	0.00	39.24	4.69
488	510	0.107268	TCTCATGGTCATGGCATCCG	59.893	55.000	10.61	0.00	39.24	4.18
489	511	1.142465	ACTCTCATGGTCATGGCATCC	59.858	52.381	10.61	0.00	39.24	3.51
490	512	2.617308	CAACTCTCATGGTCATGGCATC	59.383	50.000	10.61	0.00	39.24	3.91
597	628	0.119155	TGGAGATGGAGGAACCTGGT	59.881	55.000	0.00	0.00	39.86	4.00
672	712	2.169769	CCTATAGAACCCACAGGCGAAA	59.830	50.000	0.00	0.00	36.11	3.46
798	841	0.902531	CCGTTTGGAAGGAGAGCCTA	59.097	55.000	0.00	0.00	46.28	3.93
1104	1147	2.248248	CTACTAATCTCGGGGCCATCA	58.752	52.381	4.39	0.00	0.00	3.07
1367	1410	2.229062	CCATGTATATCGCAGACTCGGT	59.771	50.000	0.00	0.00	42.51	4.69
1399	1442	7.023575	GGTATGTATTTGCAGAGACTGTTTTG	58.976	38.462	3.51	0.00	33.43	2.44
1407	1450	5.500234	AGCTTTGGTATGTATTTGCAGAGA	58.500	37.500	0.00	0.00	0.00	3.10
1934	1983	4.147306	CGATGACTAAAGCTACTTCGATGC	59.853	45.833	0.00	0.00	33.83	3.91
1951	2000	0.951558	ACCAAACAACCAGCGATGAC	59.048	50.000	0.06	0.00	0.00	3.06
2250	2300	0.395312	TCTCGACAGAAAACCCCCAC	59.605	55.000	0.00	0.00	0.00	4.61
2328	2378	9.492730	ACAGGGATTATTCTTTGGTAATCAAAT	57.507	29.630	7.25	0.00	43.57	2.32
2564	2617	3.980022	TGCAATATATCCTCTGGTCCCAA	59.020	43.478	0.00	0.00	0.00	4.12
2746	2799	2.656560	TCGCCTGCTAGTTTCTCTTC	57.343	50.000	0.00	0.00	0.00	2.87
3188	4036	8.984891	TTTGGTATATTTCTGTTTGCAATCAG	57.015	30.769	25.26	25.26	0.00	2.90
3277	4128	1.396653	CTATGGCAGGGAAAGGCTTG	58.603	55.000	0.00	0.00	0.00	4.01
3296	4147	2.291365	GACTTCGGGAGAGTCTCTACC	58.709	57.143	20.23	20.23	44.36	3.18
3300	4151	2.099994	CGGACTTCGGGAGAGTCTC	58.900	63.158	12.01	12.01	41.75	3.36
3311	4162	6.214399	AGTTATTGATACGAATCCGGACTTC	58.786	40.000	6.12	11.25	40.78	3.01
3312	4163	6.158023	AGTTATTGATACGAATCCGGACTT	57.842	37.500	6.12	1.96	40.78	3.01
3313	4164	5.786264	AGTTATTGATACGAATCCGGACT	57.214	39.130	6.12	0.00	40.78	3.85
3314	4165	6.675987	ACTAGTTATTGATACGAATCCGGAC	58.324	40.000	6.12	0.00	40.78	4.79
3430	4281	9.466497	AGGATTGCAGATTTCTTCAAATAACTA	57.534	29.630	0.00	0.00	33.21	2.24
3490	4341	9.088512	CCTATTACTATTCATGTTAGATTCCGC	57.911	37.037	10.94	0.00	0.00	5.54
3542	4393	8.437360	TGGTTGCATGATAAATCAAGTAGTAG	57.563	34.615	0.00	0.00	40.69	2.57
3564	4415	8.697507	ATTCTTCTGTTCTTTAATCTGTTGGT	57.302	30.769	0.00	0.00	0.00	3.67
3750	4817	3.157949	CTCCTCCTCCTTCCCGCC	61.158	72.222	0.00	0.00	0.00	6.13
3774	4847	2.678934	CCGAGACTCCGACCCCAA	60.679	66.667	0.00	0.00	0.00	4.12
3776	4849	2.829458	CTCCGAGACTCCGACCCC	60.829	72.222	0.00	0.00	0.00	4.95
3787	4860	3.115556	CTCGCCTTCCTCTCCGAG	58.884	66.667	0.00	0.00	40.76	4.63
3820	4893	3.157949	CTCGCTCCTCCCCTTCCC	61.158	72.222	0.00	0.00	0.00	3.97
3821	4894	2.364448	ACTCGCTCCTCCCCTTCC	60.364	66.667	0.00	0.00	0.00	3.46
3823	4896	2.756283	CGACTCGCTCCTCCCCTT	60.756	66.667	0.00	0.00	0.00	3.95
3824	4897	3.707640	CTCGACTCGCTCCTCCCCT	62.708	68.421	0.00	0.00	0.00	4.79
3826	4899	3.213402	CCTCGACTCGCTCCTCCC	61.213	72.222	0.00	0.00	0.00	4.30
3827	4900	2.124653	TCCTCGACTCGCTCCTCC	60.125	66.667	0.00	0.00	0.00	4.30
3829	4902	2.124487	CCTCCTCGACTCGCTCCT	60.124	66.667	0.00	0.00	0.00	3.69
3831	4904	3.894947	GGCCTCCTCGACTCGCTC	61.895	72.222	0.00	0.00	0.00	5.03
3835	4908	3.213402	CTCCGGCCTCCTCGACTC	61.213	72.222	0.00	0.00	0.00	3.36
3836	4909	3.707640	CTCTCCGGCCTCCTCGACT	62.708	68.421	0.00	0.00	0.00	4.18
3842	4918	0.537828	CTACTACCTCTCCGGCCTCC	60.538	65.000	0.00	0.00	35.61	4.30
3849	4925	2.223745	CTCGCCTTCTACTACCTCTCC	58.776	57.143	0.00	0.00	0.00	3.71
3856	4932	0.181114	TACCCGCTCGCCTTCTACTA	59.819	55.000	0.00	0.00	0.00	1.82

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.