Multiple sequence alignment - TraesCS7B01G026300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G026300 chr7B 100.000 3895 0 0 1 3895 25586510 25590404 0.000000e+00 7193.0
1 TraesCS7B01G026300 chr7A 87.990 2881 160 88 398 3173 81631825 81634624 0.000000e+00 3232.0
2 TraesCS7B01G026300 chr7A 89.828 698 44 11 3207 3895 81634622 81635301 0.000000e+00 870.0
3 TraesCS7B01G026300 chr7A 85.223 494 39 12 1650 2131 658724319 658724790 9.790000e-131 477.0
4 TraesCS7B01G026300 chr7A 85.408 466 33 13 1650 2100 728374749 728374304 5.930000e-123 451.0
5 TraesCS7B01G026300 chr7A 84.337 498 37 13 1646 2131 576381986 576381518 2.130000e-122 449.0
6 TraesCS7B01G026300 chr7A 87.273 165 10 2 1383 1547 728374915 728374762 1.110000e-40 178.0
7 TraesCS7B01G026300 chr7A 85.030 167 9 7 1383 1544 658724148 658724303 5.210000e-34 156.0
8 TraesCS7B01G026300 chr7A 96.364 55 2 0 1325 1379 728375000 728374946 1.490000e-14 91.6
9 TraesCS7B01G026300 chr7D 90.373 2223 124 45 995 3151 78189932 78192130 0.000000e+00 2837.0
10 TraesCS7B01G026300 chr7D 91.727 689 27 11 3207 3895 78192142 78192800 0.000000e+00 929.0
11 TraesCS7B01G026300 chr7D 85.920 348 17 14 399 720 78188909 78189250 3.730000e-90 342.0
12 TraesCS7B01G026300 chr7D 91.071 112 1 5 777 881 78189670 78189779 4.060000e-30 143.0
13 TraesCS7B01G026300 chr7D 100.000 34 0 0 3169 3202 60669585 60669552 3.250000e-06 63.9
14 TraesCS7B01G026300 chr4A 82.130 845 75 41 1243 2046 651217722 651218531 0.000000e+00 654.0
15 TraesCS7B01G026300 chr6A 81.991 844 78 38 1243 2046 254936332 254937141 0.000000e+00 649.0
16 TraesCS7B01G026300 chr6A 80.189 318 37 15 1826 2131 354884869 354884566 8.480000e-52 215.0
17 TraesCS7B01G026300 chr6A 88.525 61 6 1 1316 1375 596750224 596750164 5.400000e-09 73.1
18 TraesCS7B01G026300 chr5B 80.448 849 74 33 1243 2046 167760528 167759727 7.310000e-157 564.0
19 TraesCS7B01G026300 chr5B 84.486 593 54 16 1551 2131 56020236 56020802 5.690000e-153 551.0
20 TraesCS7B01G026300 chr3A 85.830 494 35 15 1650 2131 604999784 604999314 3.500000e-135 492.0
21 TraesCS7B01G026300 chr3A 89.730 370 34 3 4 372 599992874 599992508 1.640000e-128 470.0
22 TraesCS7B01G026300 chr3A 84.716 229 17 9 1325 1547 605000013 604999797 3.050000e-51 213.0
23 TraesCS7B01G026300 chr3A 100.000 33 0 0 3169 3201 595454254 595454222 1.170000e-05 62.1
24 TraesCS7B01G026300 chr3D 90.323 372 33 2 2 372 58989470 58989101 5.850000e-133 484.0
25 TraesCS7B01G026300 chr3D 90.027 371 34 2 2 371 58841846 58841478 9.790000e-131 477.0
26 TraesCS7B01G026300 chr3D 90.027 371 34 2 2 371 58896774 58896406 9.790000e-131 477.0
27 TraesCS7B01G026300 chr3D 100.000 33 0 0 3168 3200 445342950 445342982 1.170000e-05 62.1
28 TraesCS7B01G026300 chr5A 90.054 372 34 2 2 372 229489901 229490270 2.720000e-131 479.0
29 TraesCS7B01G026300 chr4B 85.020 494 41 12 1650 2131 228742526 228742998 4.560000e-129 472.0
30 TraesCS7B01G026300 chr4B 85.020 494 37 20 1383 1870 344472202 344472664 5.890000e-128 468.0
31 TraesCS7B01G026300 chr4B 89.532 363 35 2 2 362 481806087 481806448 1.280000e-124 457.0
32 TraesCS7B01G026300 chr4B 88.441 372 38 3 4 374 341929013 341928646 9.930000e-121 444.0
33 TraesCS7B01G026300 chr4B 87.978 366 41 2 2 364 35232993 35233358 2.780000e-116 429.0
34 TraesCS7B01G026300 chr4B 86.624 157 14 4 1391 1547 53487048 53486899 2.410000e-37 167.0
35 TraesCS7B01G026300 chr6D 88.827 358 39 1 2 358 411194970 411194613 4.620000e-119 438.0
36 TraesCS7B01G026300 chr6D 88.525 61 6 1 1316 1375 451111151 451111091 5.400000e-09 73.1
37 TraesCS7B01G026300 chr2D 86.945 383 26 8 1477 1859 348066526 348066884 3.620000e-110 409.0
38 TraesCS7B01G026300 chr2D 97.059 34 0 1 3168 3200 256440964 256440931 5.440000e-04 56.5
39 TraesCS7B01G026300 chr6B 88.525 61 6 1 1316 1375 685201642 685201582 5.400000e-09 73.1
40 TraesCS7B01G026300 chr4D 94.872 39 2 0 3163 3201 85535553 85535515 1.170000e-05 62.1
41 TraesCS7B01G026300 chr4D 100.000 33 0 0 3170 3202 509436222 509436254 1.170000e-05 62.1
42 TraesCS7B01G026300 chr2B 97.222 36 1 0 3165 3200 694542118 694542153 1.170000e-05 62.1
43 TraesCS7B01G026300 chr1A 97.222 36 1 0 3164 3199 526646872 526646907 1.170000e-05 62.1
44 TraesCS7B01G026300 chr1B 97.143 35 1 0 3169 3203 149273744 149273710 4.200000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G026300 chr7B 25586510 25590404 3894 False 7193.00 7193 100.000000 1 3895 1 chr7B.!!$F1 3894
1 TraesCS7B01G026300 chr7A 81631825 81635301 3476 False 2051.00 3232 88.909000 398 3895 2 chr7A.!!$F1 3497
2 TraesCS7B01G026300 chr7A 658724148 658724790 642 False 316.50 477 85.126500 1383 2131 2 chr7A.!!$F2 748
3 TraesCS7B01G026300 chr7A 728374304 728375000 696 True 240.20 451 89.681667 1325 2100 3 chr7A.!!$R2 775
4 TraesCS7B01G026300 chr7D 78188909 78192800 3891 False 1062.75 2837 89.772750 399 3895 4 chr7D.!!$F1 3496
5 TraesCS7B01G026300 chr4A 651217722 651218531 809 False 654.00 654 82.130000 1243 2046 1 chr4A.!!$F1 803
6 TraesCS7B01G026300 chr6A 254936332 254937141 809 False 649.00 649 81.991000 1243 2046 1 chr6A.!!$F1 803
7 TraesCS7B01G026300 chr5B 167759727 167760528 801 True 564.00 564 80.448000 1243 2046 1 chr5B.!!$R1 803
8 TraesCS7B01G026300 chr5B 56020236 56020802 566 False 551.00 551 84.486000 1551 2131 1 chr5B.!!$F1 580
9 TraesCS7B01G026300 chr3A 604999314 605000013 699 True 352.50 492 85.273000 1325 2131 2 chr3A.!!$R3 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.034896 GGGAGCTGTTGTTCTTCGGA 59.965 55.0 0.00 0.00 0.00 4.55 F
308 309 0.038526 CAACGAGTTGTAGCCGTCCT 60.039 55.0 7.74 0.00 35.28 3.85 F
309 310 0.038526 AACGAGTTGTAGCCGTCCTG 60.039 55.0 0.00 0.00 35.28 3.86 F
567 572 0.179097 GGAACCGATGAGCTGAGGTC 60.179 60.0 4.41 4.41 35.68 3.85 F
2299 2892 0.250467 CACTTGGTGTCAGTGGGAGG 60.250 60.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2615 0.609151 CATTTGCCCAAGTGCATCCA 59.391 50.000 0.00 0.00 41.70 3.41 R
2241 2834 1.371337 TTGCATAGGCTCAAGCGCTG 61.371 55.000 12.58 5.47 43.26 5.18 R
2290 2883 1.746615 CGCCACATTCCTCCCACTG 60.747 63.158 0.00 0.00 0.00 3.66 R
2444 3037 1.048601 AAGTGAAACGGAGGCTCTGA 58.951 50.000 29.39 4.21 45.86 3.27 R
3271 3885 0.034896 ATCAGGTTCGACCACACACC 59.965 55.000 6.78 0.57 41.95 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.436646 CCTTCTCCGGCGCAATGT 60.437 61.111 10.83 0.00 0.00 2.71
18 19 1.153449 CCTTCTCCGGCGCAATGTA 60.153 57.895 10.83 0.00 0.00 2.29
19 20 1.429148 CCTTCTCCGGCGCAATGTAC 61.429 60.000 10.83 0.00 0.00 2.90
20 21 1.752501 CTTCTCCGGCGCAATGTACG 61.753 60.000 10.83 1.30 0.00 3.67
22 23 4.071875 TCCGGCGCAATGTACGGT 62.072 61.111 17.90 0.00 46.06 4.83
23 24 3.560278 CCGGCGCAATGTACGGTC 61.560 66.667 10.83 0.00 41.34 4.79
24 25 3.908951 CGGCGCAATGTACGGTCG 61.909 66.667 10.83 0.00 0.00 4.79
25 26 2.812178 GGCGCAATGTACGGTCGT 60.812 61.111 10.83 0.69 0.00 4.34
26 27 2.385091 GGCGCAATGTACGGTCGTT 61.385 57.895 10.83 0.00 0.00 3.85
27 28 1.225637 GCGCAATGTACGGTCGTTG 60.226 57.895 0.30 8.87 37.38 4.10
28 29 1.418367 CGCAATGTACGGTCGTTGG 59.582 57.895 0.16 3.63 35.58 3.77
29 30 1.286354 CGCAATGTACGGTCGTTGGT 61.286 55.000 0.16 0.00 35.58 3.67
30 31 0.165079 GCAATGTACGGTCGTTGGTG 59.835 55.000 0.16 0.00 35.58 4.17
31 32 0.793861 CAATGTACGGTCGTTGGTGG 59.206 55.000 0.16 0.00 32.59 4.61
32 33 0.393820 AATGTACGGTCGTTGGTGGT 59.606 50.000 0.16 0.00 0.00 4.16
33 34 0.320073 ATGTACGGTCGTTGGTGGTG 60.320 55.000 0.16 0.00 0.00 4.17
34 35 1.363443 GTACGGTCGTTGGTGGTGA 59.637 57.895 0.16 0.00 0.00 4.02
35 36 0.249405 GTACGGTCGTTGGTGGTGAA 60.249 55.000 0.16 0.00 0.00 3.18
36 37 0.680618 TACGGTCGTTGGTGGTGAAT 59.319 50.000 0.16 0.00 0.00 2.57
37 38 0.601841 ACGGTCGTTGGTGGTGAATC 60.602 55.000 0.00 0.00 0.00 2.52
38 39 1.296056 CGGTCGTTGGTGGTGAATCC 61.296 60.000 0.00 0.00 0.00 3.01
39 40 0.250553 GGTCGTTGGTGGTGAATCCA 60.251 55.000 0.00 0.00 45.01 3.41
47 48 3.623848 TGGTGAATCCAAGACGGTG 57.376 52.632 0.00 0.00 44.12 4.94
48 49 0.605319 TGGTGAATCCAAGACGGTGC 60.605 55.000 0.00 0.00 44.12 5.01
49 50 1.305930 GGTGAATCCAAGACGGTGCC 61.306 60.000 0.00 0.00 35.57 5.01
50 51 0.321653 GTGAATCCAAGACGGTGCCT 60.322 55.000 0.00 0.00 35.57 4.75
51 52 0.321564 TGAATCCAAGACGGTGCCTG 60.322 55.000 0.00 0.00 35.57 4.85
52 53 0.321653 GAATCCAAGACGGTGCCTGT 60.322 55.000 0.00 0.00 35.57 4.00
53 54 0.321653 AATCCAAGACGGTGCCTGTC 60.322 55.000 6.15 6.15 36.60 3.51
55 56 1.374758 CCAAGACGGTGCCTGTCTC 60.375 63.158 14.63 0.00 45.62 3.36
56 57 1.734477 CAAGACGGTGCCTGTCTCG 60.734 63.158 14.63 3.16 45.62 4.04
57 58 2.932234 AAGACGGTGCCTGTCTCGG 61.932 63.158 14.63 0.00 45.62 4.63
58 59 3.681835 GACGGTGCCTGTCTCGGT 61.682 66.667 6.85 0.00 33.54 4.69
59 60 3.628280 GACGGTGCCTGTCTCGGTC 62.628 68.421 6.85 0.00 33.54 4.79
60 61 4.778415 CGGTGCCTGTCTCGGTCG 62.778 72.222 0.00 0.00 0.00 4.79
61 62 4.436998 GGTGCCTGTCTCGGTCGG 62.437 72.222 0.00 0.00 0.00 4.79
62 63 3.371063 GTGCCTGTCTCGGTCGGA 61.371 66.667 0.00 0.00 0.00 4.55
63 64 2.362503 TGCCTGTCTCGGTCGGAT 60.363 61.111 0.00 0.00 0.00 4.18
64 65 2.413765 GCCTGTCTCGGTCGGATC 59.586 66.667 0.00 0.00 0.00 3.36
65 66 2.716244 CCTGTCTCGGTCGGATCG 59.284 66.667 3.82 3.82 0.00 3.69
66 67 1.818363 CCTGTCTCGGTCGGATCGA 60.818 63.158 13.37 13.37 35.24 3.59
70 71 3.023950 CTCGGTCGGATCGAGTCC 58.976 66.667 27.91 1.35 46.16 3.85
71 72 2.515523 TCGGTCGGATCGAGTCCC 60.516 66.667 9.68 0.81 44.77 4.46
72 73 3.950254 CGGTCGGATCGAGTCCCG 61.950 72.222 4.25 15.00 44.77 5.14
73 74 4.267503 GGTCGGATCGAGTCCCGC 62.268 72.222 15.99 11.83 44.77 6.13
74 75 4.267503 GTCGGATCGAGTCCCGCC 62.268 72.222 15.99 4.28 44.77 6.13
75 76 4.807631 TCGGATCGAGTCCCGCCA 62.808 66.667 15.99 1.14 44.77 5.69
76 77 3.606662 CGGATCGAGTCCCGCCAT 61.607 66.667 10.10 0.00 44.77 4.40
77 78 2.340443 GGATCGAGTCCCGCCATC 59.660 66.667 0.00 0.00 41.50 3.51
78 79 2.340443 GATCGAGTCCCGCCATCC 59.660 66.667 0.00 0.00 38.37 3.51
79 80 2.123251 ATCGAGTCCCGCCATCCT 60.123 61.111 0.00 0.00 38.37 3.24
80 81 2.148558 GATCGAGTCCCGCCATCCTC 62.149 65.000 0.00 0.00 38.37 3.71
81 82 2.648613 ATCGAGTCCCGCCATCCTCT 62.649 60.000 0.00 0.00 38.37 3.69
82 83 2.427245 CGAGTCCCGCCATCCTCTT 61.427 63.158 0.00 0.00 0.00 2.85
83 84 1.144936 GAGTCCCGCCATCCTCTTG 59.855 63.158 0.00 0.00 0.00 3.02
84 85 2.514824 GTCCCGCCATCCTCTTGC 60.515 66.667 0.00 0.00 0.00 4.01
85 86 3.797353 TCCCGCCATCCTCTTGCC 61.797 66.667 0.00 0.00 0.00 4.52
86 87 4.113815 CCCGCCATCCTCTTGCCA 62.114 66.667 0.00 0.00 0.00 4.92
87 88 2.825836 CCGCCATCCTCTTGCCAC 60.826 66.667 0.00 0.00 0.00 5.01
88 89 2.825836 CGCCATCCTCTTGCCACC 60.826 66.667 0.00 0.00 0.00 4.61
89 90 2.679716 GCCATCCTCTTGCCACCT 59.320 61.111 0.00 0.00 0.00 4.00
90 91 1.452833 GCCATCCTCTTGCCACCTC 60.453 63.158 0.00 0.00 0.00 3.85
91 92 1.225704 CCATCCTCTTGCCACCTCC 59.774 63.158 0.00 0.00 0.00 4.30
92 93 1.277580 CCATCCTCTTGCCACCTCCT 61.278 60.000 0.00 0.00 0.00 3.69
93 94 0.622665 CATCCTCTTGCCACCTCCTT 59.377 55.000 0.00 0.00 0.00 3.36
94 95 1.005215 CATCCTCTTGCCACCTCCTTT 59.995 52.381 0.00 0.00 0.00 3.11
95 96 2.038863 TCCTCTTGCCACCTCCTTTA 57.961 50.000 0.00 0.00 0.00 1.85
96 97 1.909302 TCCTCTTGCCACCTCCTTTAG 59.091 52.381 0.00 0.00 0.00 1.85
106 107 2.355010 CCTCCTTTAGGCATCAAGGG 57.645 55.000 11.21 2.78 40.21 3.95
107 108 1.133668 CCTCCTTTAGGCATCAAGGGG 60.134 57.143 11.21 7.85 40.05 4.79
108 109 0.926293 TCCTTTAGGCATCAAGGGGG 59.074 55.000 11.21 0.00 40.21 5.40
122 123 2.750237 GGGGGATGGTGCGTTGAC 60.750 66.667 0.00 0.00 0.00 3.18
123 124 3.124921 GGGGATGGTGCGTTGACG 61.125 66.667 0.00 0.00 43.27 4.35
124 125 2.047655 GGGATGGTGCGTTGACGA 60.048 61.111 7.85 0.00 43.02 4.20
125 126 2.100631 GGGATGGTGCGTTGACGAG 61.101 63.158 7.85 0.00 43.02 4.18
126 127 2.100631 GGATGGTGCGTTGACGAGG 61.101 63.158 7.85 0.00 43.02 4.63
127 128 2.047274 ATGGTGCGTTGACGAGGG 60.047 61.111 7.85 0.00 43.02 4.30
128 129 2.501223 GATGGTGCGTTGACGAGGGA 62.501 60.000 7.85 0.00 43.02 4.20
129 130 2.029964 GGTGCGTTGACGAGGGAA 59.970 61.111 7.85 0.00 43.02 3.97
130 131 2.027625 GGTGCGTTGACGAGGGAAG 61.028 63.158 7.85 0.00 43.02 3.46
131 132 2.357034 TGCGTTGACGAGGGAAGC 60.357 61.111 7.85 0.00 43.02 3.86
132 133 2.048127 GCGTTGACGAGGGAAGCT 60.048 61.111 7.85 0.00 43.02 3.74
133 134 1.668151 GCGTTGACGAGGGAAGCTT 60.668 57.895 7.85 0.00 43.02 3.74
134 135 1.901650 GCGTTGACGAGGGAAGCTTG 61.902 60.000 2.10 0.00 43.02 4.01
135 136 1.291877 CGTTGACGAGGGAAGCTTGG 61.292 60.000 2.10 0.00 43.02 3.61
136 137 0.250338 GTTGACGAGGGAAGCTTGGT 60.250 55.000 2.10 0.00 0.00 3.67
137 138 0.250295 TTGACGAGGGAAGCTTGGTG 60.250 55.000 2.10 0.00 0.00 4.17
138 139 1.376037 GACGAGGGAAGCTTGGTGG 60.376 63.158 2.10 0.00 0.00 4.61
139 140 2.045926 CGAGGGAAGCTTGGTGGG 60.046 66.667 2.10 0.00 0.00 4.61
140 141 2.592993 CGAGGGAAGCTTGGTGGGA 61.593 63.158 2.10 0.00 0.00 4.37
141 142 1.301293 GAGGGAAGCTTGGTGGGAG 59.699 63.158 2.10 0.00 0.00 4.30
142 143 2.361737 GGGAAGCTTGGTGGGAGC 60.362 66.667 2.10 0.00 40.43 4.70
147 148 3.359002 GCTTGGTGGGAGCTGTTG 58.641 61.111 0.00 0.00 37.18 3.33
148 149 1.529244 GCTTGGTGGGAGCTGTTGT 60.529 57.895 0.00 0.00 37.18 3.32
149 150 1.109323 GCTTGGTGGGAGCTGTTGTT 61.109 55.000 0.00 0.00 37.18 2.83
150 151 0.954452 CTTGGTGGGAGCTGTTGTTC 59.046 55.000 0.00 0.00 0.00 3.18
151 152 0.550914 TTGGTGGGAGCTGTTGTTCT 59.449 50.000 0.00 0.00 0.00 3.01
152 153 0.550914 TGGTGGGAGCTGTTGTTCTT 59.449 50.000 0.00 0.00 0.00 2.52
153 154 1.239347 GGTGGGAGCTGTTGTTCTTC 58.761 55.000 0.00 0.00 0.00 2.87
154 155 0.868406 GTGGGAGCTGTTGTTCTTCG 59.132 55.000 0.00 0.00 0.00 3.79
155 156 0.250295 TGGGAGCTGTTGTTCTTCGG 60.250 55.000 0.00 0.00 0.00 4.30
156 157 0.034896 GGGAGCTGTTGTTCTTCGGA 59.965 55.000 0.00 0.00 0.00 4.55
157 158 1.433534 GGAGCTGTTGTTCTTCGGAG 58.566 55.000 0.00 0.00 0.00 4.63
158 159 1.433534 GAGCTGTTGTTCTTCGGAGG 58.566 55.000 0.00 0.00 0.00 4.30
159 160 0.759346 AGCTGTTGTTCTTCGGAGGT 59.241 50.000 0.00 0.00 0.00 3.85
160 161 1.968493 AGCTGTTGTTCTTCGGAGGTA 59.032 47.619 0.00 0.00 0.00 3.08
161 162 2.367567 AGCTGTTGTTCTTCGGAGGTAA 59.632 45.455 0.00 0.00 0.00 2.85
162 163 2.479275 GCTGTTGTTCTTCGGAGGTAAC 59.521 50.000 0.00 0.00 0.00 2.50
174 175 4.104143 GGTAACTGGCATCGGTCG 57.896 61.111 0.00 0.00 0.00 4.79
175 176 1.514087 GGTAACTGGCATCGGTCGA 59.486 57.895 0.00 0.00 0.00 4.20
176 177 0.527817 GGTAACTGGCATCGGTCGAG 60.528 60.000 0.00 0.00 0.00 4.04
177 178 0.454600 GTAACTGGCATCGGTCGAGA 59.545 55.000 0.00 0.00 0.00 4.04
178 179 0.454600 TAACTGGCATCGGTCGAGAC 59.545 55.000 0.00 0.00 0.00 3.36
179 180 2.278206 CTGGCATCGGTCGAGACG 60.278 66.667 3.22 3.22 0.00 4.18
180 181 4.492160 TGGCATCGGTCGAGACGC 62.492 66.667 4.68 1.97 0.00 5.19
191 192 2.737376 GAGACGCGGCGAGGTTTT 60.737 61.111 30.94 4.72 0.00 2.43
192 193 2.727684 GAGACGCGGCGAGGTTTTC 61.728 63.158 30.94 14.78 0.00 2.29
205 206 4.614946 CGAGGTTTTCGTATTAGGGTAGG 58.385 47.826 0.00 0.00 44.27 3.18
206 207 4.500375 CGAGGTTTTCGTATTAGGGTAGGG 60.500 50.000 0.00 0.00 44.27 3.53
207 208 4.365368 AGGTTTTCGTATTAGGGTAGGGT 58.635 43.478 0.00 0.00 0.00 4.34
208 209 4.406972 AGGTTTTCGTATTAGGGTAGGGTC 59.593 45.833 0.00 0.00 0.00 4.46
209 210 4.406972 GGTTTTCGTATTAGGGTAGGGTCT 59.593 45.833 0.00 0.00 0.00 3.85
210 211 5.104776 GGTTTTCGTATTAGGGTAGGGTCTT 60.105 44.000 0.00 0.00 0.00 3.01
211 212 6.409704 GTTTTCGTATTAGGGTAGGGTCTTT 58.590 40.000 0.00 0.00 0.00 2.52
212 213 6.625532 TTTCGTATTAGGGTAGGGTCTTTT 57.374 37.500 0.00 0.00 0.00 2.27
213 214 5.603170 TCGTATTAGGGTAGGGTCTTTTG 57.397 43.478 0.00 0.00 0.00 2.44
214 215 4.124970 CGTATTAGGGTAGGGTCTTTTGC 58.875 47.826 0.00 0.00 0.00 3.68
215 216 2.773993 TTAGGGTAGGGTCTTTTGCG 57.226 50.000 0.00 0.00 0.00 4.85
216 217 1.648116 TAGGGTAGGGTCTTTTGCGT 58.352 50.000 0.00 0.00 0.00 5.24
217 218 0.323957 AGGGTAGGGTCTTTTGCGTC 59.676 55.000 0.00 0.00 0.00 5.19
218 219 1.017701 GGGTAGGGTCTTTTGCGTCG 61.018 60.000 0.00 0.00 0.00 5.12
219 220 0.320160 GGTAGGGTCTTTTGCGTCGT 60.320 55.000 0.00 0.00 0.00 4.34
220 221 1.067635 GGTAGGGTCTTTTGCGTCGTA 60.068 52.381 0.00 0.00 0.00 3.43
221 222 2.257034 GTAGGGTCTTTTGCGTCGTAG 58.743 52.381 0.00 0.00 0.00 3.51
222 223 0.677842 AGGGTCTTTTGCGTCGTAGT 59.322 50.000 0.00 0.00 0.00 2.73
223 224 1.069668 AGGGTCTTTTGCGTCGTAGTT 59.930 47.619 0.00 0.00 0.00 2.24
224 225 1.193874 GGGTCTTTTGCGTCGTAGTTG 59.806 52.381 0.00 0.00 0.00 3.16
225 226 1.862827 GGTCTTTTGCGTCGTAGTTGT 59.137 47.619 0.00 0.00 0.00 3.32
226 227 2.348218 GGTCTTTTGCGTCGTAGTTGTG 60.348 50.000 0.00 0.00 0.00 3.33
227 228 2.283351 GTCTTTTGCGTCGTAGTTGTGT 59.717 45.455 0.00 0.00 0.00 3.72
228 229 2.536803 TCTTTTGCGTCGTAGTTGTGTC 59.463 45.455 0.00 0.00 0.00 3.67
229 230 0.847670 TTTGCGTCGTAGTTGTGTCG 59.152 50.000 0.00 0.00 0.00 4.35
230 231 0.248580 TTGCGTCGTAGTTGTGTCGT 60.249 50.000 0.00 0.00 0.00 4.34
231 232 0.248580 TGCGTCGTAGTTGTGTCGTT 60.249 50.000 0.00 0.00 0.00 3.85
232 233 0.158096 GCGTCGTAGTTGTGTCGTTG 59.842 55.000 0.00 0.00 0.00 4.10
233 234 1.469917 CGTCGTAGTTGTGTCGTTGT 58.530 50.000 0.00 0.00 0.00 3.32
234 235 1.847999 CGTCGTAGTTGTGTCGTTGTT 59.152 47.619 0.00 0.00 0.00 2.83
235 236 2.346012 CGTCGTAGTTGTGTCGTTGTTG 60.346 50.000 0.00 0.00 0.00 3.33
236 237 2.853594 GTCGTAGTTGTGTCGTTGTTGA 59.146 45.455 0.00 0.00 0.00 3.18
237 238 3.488310 GTCGTAGTTGTGTCGTTGTTGAT 59.512 43.478 0.00 0.00 0.00 2.57
238 239 3.487942 TCGTAGTTGTGTCGTTGTTGATG 59.512 43.478 0.00 0.00 0.00 3.07
239 240 3.362596 CGTAGTTGTGTCGTTGTTGATGG 60.363 47.826 0.00 0.00 0.00 3.51
240 241 2.639065 AGTTGTGTCGTTGTTGATGGT 58.361 42.857 0.00 0.00 0.00 3.55
241 242 3.013921 AGTTGTGTCGTTGTTGATGGTT 58.986 40.909 0.00 0.00 0.00 3.67
242 243 3.105203 GTTGTGTCGTTGTTGATGGTTG 58.895 45.455 0.00 0.00 0.00 3.77
243 244 2.360844 TGTGTCGTTGTTGATGGTTGT 58.639 42.857 0.00 0.00 0.00 3.32
244 245 2.353269 TGTGTCGTTGTTGATGGTTGTC 59.647 45.455 0.00 0.00 0.00 3.18
245 246 2.612212 GTGTCGTTGTTGATGGTTGTCT 59.388 45.455 0.00 0.00 0.00 3.41
246 247 3.064820 GTGTCGTTGTTGATGGTTGTCTT 59.935 43.478 0.00 0.00 0.00 3.01
247 248 3.692101 TGTCGTTGTTGATGGTTGTCTTT 59.308 39.130 0.00 0.00 0.00 2.52
248 249 4.035017 GTCGTTGTTGATGGTTGTCTTTG 58.965 43.478 0.00 0.00 0.00 2.77
249 250 3.066064 TCGTTGTTGATGGTTGTCTTTGG 59.934 43.478 0.00 0.00 0.00 3.28
250 251 3.066064 CGTTGTTGATGGTTGTCTTTGGA 59.934 43.478 0.00 0.00 0.00 3.53
251 252 4.359706 GTTGTTGATGGTTGTCTTTGGAC 58.640 43.478 0.00 0.00 42.42 4.02
252 253 3.897239 TGTTGATGGTTGTCTTTGGACT 58.103 40.909 0.00 0.00 42.54 3.85
253 254 5.042463 TGTTGATGGTTGTCTTTGGACTA 57.958 39.130 0.00 0.00 42.54 2.59
254 255 5.063204 TGTTGATGGTTGTCTTTGGACTAG 58.937 41.667 0.00 0.00 42.54 2.57
255 256 3.674997 TGATGGTTGTCTTTGGACTAGC 58.325 45.455 0.00 0.00 42.69 3.42
256 257 2.561478 TGGTTGTCTTTGGACTAGCC 57.439 50.000 7.14 0.00 42.08 3.93
257 258 1.270625 TGGTTGTCTTTGGACTAGCCG 60.271 52.381 7.14 0.00 42.08 5.52
258 259 1.439679 GTTGTCTTTGGACTAGCCGG 58.560 55.000 0.00 0.00 42.54 6.13
259 260 1.053424 TTGTCTTTGGACTAGCCGGT 58.947 50.000 1.90 0.00 42.54 5.28
260 261 1.053424 TGTCTTTGGACTAGCCGGTT 58.947 50.000 1.90 0.00 42.54 4.44
261 262 1.270625 TGTCTTTGGACTAGCCGGTTG 60.271 52.381 1.90 0.00 42.54 3.77
262 263 1.053424 TCTTTGGACTAGCCGGTTGT 58.947 50.000 1.90 0.00 40.66 3.32
263 264 1.156736 CTTTGGACTAGCCGGTTGTG 58.843 55.000 1.90 0.00 40.66 3.33
264 265 0.250553 TTTGGACTAGCCGGTTGTGG 60.251 55.000 1.90 0.00 40.66 4.17
265 266 1.122632 TTGGACTAGCCGGTTGTGGA 61.123 55.000 1.90 0.00 40.66 4.02
266 267 1.218316 GGACTAGCCGGTTGTGGAG 59.782 63.158 1.90 0.00 0.00 3.86
267 268 1.542187 GGACTAGCCGGTTGTGGAGT 61.542 60.000 1.90 0.00 0.00 3.85
268 269 0.389948 GACTAGCCGGTTGTGGAGTG 60.390 60.000 1.90 0.00 0.00 3.51
269 270 1.079127 CTAGCCGGTTGTGGAGTGG 60.079 63.158 1.90 0.00 0.00 4.00
270 271 2.521958 CTAGCCGGTTGTGGAGTGGG 62.522 65.000 1.90 0.00 0.00 4.61
274 275 4.643387 GGTTGTGGAGTGGGCGCT 62.643 66.667 7.64 0.00 0.00 5.92
275 276 2.345991 GTTGTGGAGTGGGCGCTA 59.654 61.111 7.64 0.00 0.00 4.26
276 277 2.033194 GTTGTGGAGTGGGCGCTAC 61.033 63.158 7.64 7.35 0.00 3.58
277 278 3.583276 TTGTGGAGTGGGCGCTACG 62.583 63.158 7.64 0.00 0.00 3.51
288 289 2.681666 CGCTACGCTCGTTGTTCG 59.318 61.111 0.00 0.00 41.41 3.95
289 290 2.390670 GCTACGCTCGTTGTTCGC 59.609 61.111 0.00 0.00 39.67 4.70
290 291 2.369629 GCTACGCTCGTTGTTCGCA 61.370 57.895 0.00 0.00 39.67 5.10
291 292 1.882682 GCTACGCTCGTTGTTCGCAA 61.883 55.000 0.00 0.00 39.67 4.85
299 300 3.889780 GTTGTTCGCAACGAGTTGT 57.110 47.368 16.14 0.00 46.47 3.32
301 302 2.887733 GTTGTTCGCAACGAGTTGTAG 58.112 47.619 16.14 11.19 46.47 2.74
302 303 0.856641 TGTTCGCAACGAGTTGTAGC 59.143 50.000 16.14 8.49 42.31 3.58
303 304 0.163146 GTTCGCAACGAGTTGTAGCC 59.837 55.000 16.14 0.51 42.31 3.93
304 305 1.279527 TTCGCAACGAGTTGTAGCCG 61.280 55.000 16.14 11.32 42.31 5.52
305 306 2.019951 CGCAACGAGTTGTAGCCGT 61.020 57.895 16.14 0.00 42.31 5.68
306 307 1.779683 GCAACGAGTTGTAGCCGTC 59.220 57.895 16.14 0.00 42.31 4.79
307 308 1.623973 GCAACGAGTTGTAGCCGTCC 61.624 60.000 16.14 0.00 42.31 4.79
308 309 0.038526 CAACGAGTTGTAGCCGTCCT 60.039 55.000 7.74 0.00 35.28 3.85
309 310 0.038526 AACGAGTTGTAGCCGTCCTG 60.039 55.000 0.00 0.00 35.28 3.86
310 311 1.177256 ACGAGTTGTAGCCGTCCTGT 61.177 55.000 0.00 0.00 29.82 4.00
311 312 0.806868 CGAGTTGTAGCCGTCCTGTA 59.193 55.000 0.00 0.00 0.00 2.74
312 313 1.467035 CGAGTTGTAGCCGTCCTGTAC 60.467 57.143 0.00 0.00 0.00 2.90
313 314 1.817447 GAGTTGTAGCCGTCCTGTACT 59.183 52.381 0.00 0.00 0.00 2.73
314 315 2.230750 GAGTTGTAGCCGTCCTGTACTT 59.769 50.000 0.00 0.00 0.00 2.24
315 316 2.029290 AGTTGTAGCCGTCCTGTACTTG 60.029 50.000 0.00 0.00 0.00 3.16
316 317 1.624336 TGTAGCCGTCCTGTACTTGT 58.376 50.000 0.00 0.00 0.00 3.16
317 318 2.794103 TGTAGCCGTCCTGTACTTGTA 58.206 47.619 0.00 0.00 0.00 2.41
318 319 3.156293 TGTAGCCGTCCTGTACTTGTAA 58.844 45.455 0.00 0.00 0.00 2.41
319 320 3.765511 TGTAGCCGTCCTGTACTTGTAAT 59.234 43.478 0.00 0.00 0.00 1.89
320 321 3.975168 AGCCGTCCTGTACTTGTAATT 57.025 42.857 0.00 0.00 0.00 1.40
321 322 3.858247 AGCCGTCCTGTACTTGTAATTC 58.142 45.455 0.00 0.00 0.00 2.17
322 323 2.601763 GCCGTCCTGTACTTGTAATTCG 59.398 50.000 0.00 0.00 0.00 3.34
323 324 2.601763 CCGTCCTGTACTTGTAATTCGC 59.398 50.000 0.00 0.00 0.00 4.70
324 325 3.508762 CGTCCTGTACTTGTAATTCGCT 58.491 45.455 0.00 0.00 0.00 4.93
325 326 3.924686 CGTCCTGTACTTGTAATTCGCTT 59.075 43.478 0.00 0.00 0.00 4.68
326 327 4.031426 CGTCCTGTACTTGTAATTCGCTTC 59.969 45.833 0.00 0.00 0.00 3.86
327 328 5.169295 GTCCTGTACTTGTAATTCGCTTCT 58.831 41.667 0.00 0.00 0.00 2.85
328 329 5.638234 GTCCTGTACTTGTAATTCGCTTCTT 59.362 40.000 0.00 0.00 0.00 2.52
329 330 5.867716 TCCTGTACTTGTAATTCGCTTCTTC 59.132 40.000 0.00 0.00 0.00 2.87
330 331 5.869888 CCTGTACTTGTAATTCGCTTCTTCT 59.130 40.000 0.00 0.00 0.00 2.85
331 332 6.183360 CCTGTACTTGTAATTCGCTTCTTCTG 60.183 42.308 0.00 0.00 0.00 3.02
332 333 6.220930 TGTACTTGTAATTCGCTTCTTCTGT 58.779 36.000 0.00 0.00 0.00 3.41
333 334 7.372714 TGTACTTGTAATTCGCTTCTTCTGTA 58.627 34.615 0.00 0.00 0.00 2.74
334 335 7.868922 TGTACTTGTAATTCGCTTCTTCTGTAA 59.131 33.333 0.00 0.00 0.00 2.41
335 336 7.724305 ACTTGTAATTCGCTTCTTCTGTAAA 57.276 32.000 0.00 0.00 0.00 2.01
336 337 7.797819 ACTTGTAATTCGCTTCTTCTGTAAAG 58.202 34.615 0.00 0.00 0.00 1.85
337 338 6.721571 TGTAATTCGCTTCTTCTGTAAAGG 57.278 37.500 0.00 0.00 0.00 3.11
338 339 6.228258 TGTAATTCGCTTCTTCTGTAAAGGT 58.772 36.000 0.00 0.00 0.00 3.50
339 340 7.380536 TGTAATTCGCTTCTTCTGTAAAGGTA 58.619 34.615 0.00 0.00 0.00 3.08
340 341 8.038944 TGTAATTCGCTTCTTCTGTAAAGGTAT 58.961 33.333 0.00 0.00 0.00 2.73
341 342 7.923414 AATTCGCTTCTTCTGTAAAGGTATT 57.077 32.000 0.00 0.00 0.00 1.89
342 343 6.721571 TTCGCTTCTTCTGTAAAGGTATTG 57.278 37.500 0.00 0.00 0.00 1.90
343 344 5.790593 TCGCTTCTTCTGTAAAGGTATTGT 58.209 37.500 0.00 0.00 0.00 2.71
344 345 6.927416 TCGCTTCTTCTGTAAAGGTATTGTA 58.073 36.000 0.00 0.00 0.00 2.41
345 346 6.810182 TCGCTTCTTCTGTAAAGGTATTGTAC 59.190 38.462 0.00 0.00 0.00 2.90
346 347 6.588756 CGCTTCTTCTGTAAAGGTATTGTACA 59.411 38.462 0.00 0.00 0.00 2.90
347 348 7.411588 CGCTTCTTCTGTAAAGGTATTGTACAC 60.412 40.741 0.00 0.00 0.00 2.90
348 349 7.386848 GCTTCTTCTGTAAAGGTATTGTACACA 59.613 37.037 0.00 0.00 0.00 3.72
349 350 9.268268 CTTCTTCTGTAAAGGTATTGTACACAA 57.732 33.333 0.00 0.00 40.51 3.33
351 352 9.787435 TCTTCTGTAAAGGTATTGTACACAATT 57.213 29.630 12.50 0.00 43.48 2.32
354 355 8.293867 TCTGTAAAGGTATTGTACACAATTTGC 58.706 33.333 12.50 6.50 43.48 3.68
355 356 7.078851 TGTAAAGGTATTGTACACAATTTGCG 58.921 34.615 12.50 0.00 43.48 4.85
356 357 5.699097 AAGGTATTGTACACAATTTGCGT 57.301 34.783 12.50 0.00 43.48 5.24
357 358 6.804770 AAGGTATTGTACACAATTTGCGTA 57.195 33.333 12.50 0.00 43.48 4.42
358 359 6.173191 AGGTATTGTACACAATTTGCGTAC 57.827 37.500 16.99 16.99 43.48 3.67
359 360 5.935789 AGGTATTGTACACAATTTGCGTACT 59.064 36.000 21.81 10.35 43.48 2.73
360 361 6.091713 AGGTATTGTACACAATTTGCGTACTC 59.908 38.462 21.81 12.77 43.48 2.59
361 362 6.091713 GGTATTGTACACAATTTGCGTACTCT 59.908 38.462 21.81 14.19 43.48 3.24
362 363 5.585500 TTGTACACAATTTGCGTACTCTC 57.415 39.130 21.81 3.64 36.96 3.20
363 364 3.671459 TGTACACAATTTGCGTACTCTCG 59.329 43.478 21.81 0.00 36.96 4.04
364 365 2.066262 ACACAATTTGCGTACTCTCGG 58.934 47.619 0.00 0.00 0.00 4.63
365 366 1.393539 CACAATTTGCGTACTCTCGGG 59.606 52.381 0.00 0.00 0.00 5.14
366 367 1.274167 ACAATTTGCGTACTCTCGGGA 59.726 47.619 0.00 0.00 0.00 5.14
367 368 2.289195 ACAATTTGCGTACTCTCGGGAA 60.289 45.455 0.00 0.00 0.00 3.97
368 369 2.739913 CAATTTGCGTACTCTCGGGAAA 59.260 45.455 0.00 0.00 0.00 3.13
369 370 2.529780 TTTGCGTACTCTCGGGAAAA 57.470 45.000 0.00 0.00 0.00 2.29
370 371 2.529780 TTGCGTACTCTCGGGAAAAA 57.470 45.000 0.00 0.00 0.00 1.94
488 493 3.538028 CTCGACGCAGACACCACGT 62.538 63.158 0.00 0.00 43.83 4.49
489 494 2.178892 CTCGACGCAGACACCACGTA 62.179 60.000 0.00 0.00 40.69 3.57
490 495 2.078914 CGACGCAGACACCACGTAC 61.079 63.158 0.00 0.00 40.69 3.67
491 496 1.285023 GACGCAGACACCACGTACT 59.715 57.895 0.00 0.00 40.69 2.73
494 499 0.239082 CGCAGACACCACGTACTACA 59.761 55.000 0.00 0.00 0.00 2.74
513 518 2.434185 CACAGCGCCGTACCACAT 60.434 61.111 2.29 0.00 0.00 3.21
563 568 0.537188 GGAAGGAACCGATGAGCTGA 59.463 55.000 0.00 0.00 0.00 4.26
564 569 1.472376 GGAAGGAACCGATGAGCTGAG 60.472 57.143 0.00 0.00 0.00 3.35
565 570 0.539051 AAGGAACCGATGAGCTGAGG 59.461 55.000 0.00 0.00 0.00 3.86
566 571 0.616111 AGGAACCGATGAGCTGAGGT 60.616 55.000 0.00 0.00 38.88 3.85
567 572 0.179097 GGAACCGATGAGCTGAGGTC 60.179 60.000 4.41 4.41 35.68 3.85
610 648 2.124507 CTCAACCGAAAGCCCCTCCA 62.125 60.000 0.00 0.00 0.00 3.86
626 674 2.256591 CCACAGCACAGCACAGACC 61.257 63.158 0.00 0.00 0.00 3.85
628 676 2.111669 CAGCACAGCACAGACCCA 59.888 61.111 0.00 0.00 0.00 4.51
629 677 1.964891 CAGCACAGCACAGACCCAG 60.965 63.158 0.00 0.00 0.00 4.45
632 680 1.004080 CACAGCACAGACCCAGAGG 60.004 63.158 0.00 0.00 40.04 3.69
633 681 2.046507 CAGCACAGACCCAGAGGC 60.047 66.667 0.00 0.00 36.11 4.70
634 682 2.527624 AGCACAGACCCAGAGGCA 60.528 61.111 0.00 0.00 36.11 4.75
639 687 3.715097 AGACCCAGAGGCAGCAGC 61.715 66.667 0.00 0.00 41.10 5.25
640 688 4.025858 GACCCAGAGGCAGCAGCA 62.026 66.667 2.65 0.00 44.61 4.41
884 1307 3.966930 GACGCCACCTCCTCCTCCT 62.967 68.421 0.00 0.00 0.00 3.69
976 1428 4.498520 CTCGCGGGCGTGTGATCT 62.499 66.667 13.21 0.00 40.74 2.75
977 1429 4.794439 TCGCGGGCGTGTGATCTG 62.794 66.667 13.21 0.00 40.74 2.90
981 1433 3.490759 GGGCGTGTGATCTGTGCG 61.491 66.667 0.00 0.00 0.00 5.34
983 1435 4.152625 GCGTGTGATCTGTGCGGC 62.153 66.667 0.00 0.00 0.00 6.53
984 1436 3.842126 CGTGTGATCTGTGCGGCG 61.842 66.667 0.51 0.51 0.00 6.46
986 1438 2.027073 GTGTGATCTGTGCGGCGAA 61.027 57.895 12.98 0.00 0.00 4.70
987 1439 1.737735 TGTGATCTGTGCGGCGAAG 60.738 57.895 12.98 4.49 0.00 3.79
1010 1474 2.367512 AGGTGGGATGGAGGAGCC 60.368 66.667 0.00 0.00 37.10 4.70
1125 1595 4.812476 CGGCGCCAGATGTTCGGA 62.812 66.667 28.98 0.00 0.00 4.55
1134 1604 3.447025 GATGTTCGGAGGAGGGGCG 62.447 68.421 0.00 0.00 0.00 6.13
1191 1661 3.738246 CAGCAGCAGCAGCACCAG 61.738 66.667 12.92 0.00 45.49 4.00
1379 1849 1.545706 AACCTCTCCGAGAAGGTGGC 61.546 60.000 15.95 0.00 41.99 5.01
1380 1850 1.684049 CCTCTCCGAGAAGGTGGCT 60.684 63.158 0.00 0.00 41.99 4.75
1562 2073 2.355009 GCCGGCAGCACAACAAAG 60.355 61.111 24.80 0.00 42.97 2.77
1576 2087 2.425312 CAACAAAGCCAACCACTGTACA 59.575 45.455 0.00 0.00 0.00 2.90
1581 2092 2.572290 AGCCAACCACTGTACAACTTC 58.428 47.619 0.00 0.00 0.00 3.01
1583 2094 2.884639 GCCAACCACTGTACAACTTCAT 59.115 45.455 0.00 0.00 0.00 2.57
1633 2144 1.488527 ACTGAGTTTCGTCGTGCTTC 58.511 50.000 0.00 0.00 0.00 3.86
1812 2368 3.119316 TCCAAACTGCAAACATTGACGTT 60.119 39.130 0.00 0.00 0.00 3.99
1822 2378 5.732247 GCAAACATTGACGTTGGAGTAAAGT 60.732 40.000 0.00 0.00 33.56 2.66
1879 2435 8.918202 TTTATCCAATCCATAGCGAAGTAATT 57.082 30.769 0.00 0.00 0.00 1.40
1911 2467 3.492421 AAATTTCCACATAGCACAGCG 57.508 42.857 0.00 0.00 0.00 5.18
1965 2553 7.829211 TCTTATAGAACTGTTGATTTCCTTGGG 59.171 37.037 0.00 0.00 0.00 4.12
1972 2560 3.383185 TGTTGATTTCCTTGGGTTCACAC 59.617 43.478 0.00 0.00 0.00 3.82
2027 2615 4.422984 TGTTAGGGCTAGTTTCCTAGTGT 58.577 43.478 8.08 0.00 42.35 3.55
2038 2627 2.768253 TCCTAGTGTGGATGCACTTG 57.232 50.000 18.75 7.37 46.45 3.16
2178 2771 3.149005 ACAGAGTTTTTGCCCCGATAA 57.851 42.857 0.00 0.00 0.00 1.75
2182 2775 5.011635 ACAGAGTTTTTGCCCCGATAATTTT 59.988 36.000 0.00 0.00 0.00 1.82
2183 2776 5.931724 CAGAGTTTTTGCCCCGATAATTTTT 59.068 36.000 0.00 0.00 0.00 1.94
2236 2829 5.005394 CGTTTACTTGAACCCATCGTATCTG 59.995 44.000 0.00 0.00 0.00 2.90
2241 2834 2.159099 TGAACCCATCGTATCTGTCTGC 60.159 50.000 0.00 0.00 0.00 4.26
2245 2838 1.126890 CATCGTATCTGTCTGCAGCG 58.873 55.000 9.47 4.98 42.29 5.18
2255 2848 2.125391 CTGCAGCGCTTGAGCCTA 60.125 61.111 7.50 0.00 37.91 3.93
2290 2883 0.455410 TGTTTGCAGCACTTGGTGTC 59.545 50.000 9.98 3.66 44.70 3.67
2299 2892 0.250467 CACTTGGTGTCAGTGGGAGG 60.250 60.000 0.00 0.00 0.00 4.30
2366 2959 3.626670 CCAAAGTTCAGGAGCTCATCATC 59.373 47.826 17.19 0.00 0.00 2.92
2444 3037 5.453198 CCAAGCTGTCCTAAAACAACCATTT 60.453 40.000 0.00 0.00 0.00 2.32
2525 3118 5.152623 TGAATCCTCAGAGGTAACACAAG 57.847 43.478 16.65 0.00 36.53 3.16
2526 3119 4.593206 TGAATCCTCAGAGGTAACACAAGT 59.407 41.667 16.65 0.00 36.53 3.16
2527 3120 5.778241 TGAATCCTCAGAGGTAACACAAGTA 59.222 40.000 16.65 0.00 36.53 2.24
2528 3121 5.662674 ATCCTCAGAGGTAACACAAGTAC 57.337 43.478 16.65 0.00 36.53 2.73
2529 3122 3.830755 TCCTCAGAGGTAACACAAGTACC 59.169 47.826 16.65 0.00 36.53 3.34
2530 3123 3.833070 CCTCAGAGGTAACACAAGTACCT 59.167 47.826 8.54 2.79 46.05 3.08
2531 3124 4.283722 CCTCAGAGGTAACACAAGTACCTT 59.716 45.833 8.54 0.00 43.66 3.50
2532 3125 5.479375 CCTCAGAGGTAACACAAGTACCTTA 59.521 44.000 8.54 0.00 43.66 2.69
2533 3126 6.154706 CCTCAGAGGTAACACAAGTACCTTAT 59.845 42.308 8.54 0.00 43.66 1.73
2534 3127 7.166691 TCAGAGGTAACACAAGTACCTTATC 57.833 40.000 4.69 0.00 43.66 1.75
2535 3128 6.952358 TCAGAGGTAACACAAGTACCTTATCT 59.048 38.462 4.69 0.00 43.66 1.98
2537 3130 7.122948 CAGAGGTAACACAAGTACCTTATCTCT 59.877 40.741 4.69 0.00 43.66 3.10
2538 3131 7.674772 AGAGGTAACACAAGTACCTTATCTCTT 59.325 37.037 4.69 0.00 43.66 2.85
2539 3132 7.838884 AGGTAACACAAGTACCTTATCTCTTC 58.161 38.462 0.00 0.00 41.07 2.87
2553 3164 7.014808 ACCTTATCTCTTCTATTGTACTGAGGC 59.985 40.741 0.00 0.00 0.00 4.70
2578 3189 6.377327 TCAGGAAGATTTTTCTCACAACAC 57.623 37.500 0.00 0.00 0.00 3.32
2598 3209 4.096382 ACACGCATTCTTCTGTTTTGAAGT 59.904 37.500 0.00 0.00 42.76 3.01
2627 3238 3.072330 TGCGAGGGGATATAATGCTGAAA 59.928 43.478 0.00 0.00 0.00 2.69
2729 3340 3.731867 GCATTTTCATTTGTCTCGCGGAT 60.732 43.478 6.13 0.00 0.00 4.18
2767 3381 2.458969 AATGCCATGCCCCTTCACCA 62.459 55.000 0.00 0.00 0.00 4.17
2814 3428 4.924305 TTAAGGCAAGAATCATCCATGC 57.076 40.909 0.00 0.00 37.88 4.06
2910 3524 4.850680 TGTGTAGGTGAGTTTTTCTTGGT 58.149 39.130 0.00 0.00 0.00 3.67
2915 3529 5.319043 AGGTGAGTTTTTCTTGGTATGGA 57.681 39.130 0.00 0.00 0.00 3.41
3045 3659 7.309438 CCATTGCTTTTAGCTTCTCCTTTTAGT 60.309 37.037 0.00 0.00 42.97 2.24
3051 3665 9.930693 CTTTTAGCTTCTCCTTTTAGTCTAAGA 57.069 33.333 0.00 0.00 0.00 2.10
3153 3767 0.037697 TGTTCGTGCTTCGTGGCTAT 60.038 50.000 4.36 0.00 40.80 2.97
3156 3770 1.355971 TCGTGCTTCGTGGCTATTTC 58.644 50.000 4.36 0.00 40.80 2.17
3170 3784 3.557264 GGCTATTTCCCCTCGGTAGATTG 60.557 52.174 0.00 0.00 0.00 2.67
3171 3785 3.071167 GCTATTTCCCCTCGGTAGATTGT 59.929 47.826 0.00 0.00 0.00 2.71
3172 3786 4.282703 GCTATTTCCCCTCGGTAGATTGTA 59.717 45.833 0.00 0.00 0.00 2.41
3173 3787 4.684484 ATTTCCCCTCGGTAGATTGTAC 57.316 45.455 0.00 0.00 0.00 2.90
3174 3788 3.393426 TTCCCCTCGGTAGATTGTACT 57.607 47.619 0.00 0.00 0.00 2.73
3175 3789 2.941480 TCCCCTCGGTAGATTGTACTC 58.059 52.381 0.00 0.00 0.00 2.59
3176 3790 1.962100 CCCCTCGGTAGATTGTACTCC 59.038 57.143 0.00 0.00 0.00 3.85
3177 3791 1.962100 CCCTCGGTAGATTGTACTCCC 59.038 57.143 0.00 0.00 0.00 4.30
3178 3792 2.424523 CCCTCGGTAGATTGTACTCCCT 60.425 54.545 0.00 0.00 0.00 4.20
3179 3793 2.885894 CCTCGGTAGATTGTACTCCCTC 59.114 54.545 0.00 0.00 0.00 4.30
3180 3794 2.885894 CTCGGTAGATTGTACTCCCTCC 59.114 54.545 0.00 0.00 0.00 4.30
3181 3795 2.242965 TCGGTAGATTGTACTCCCTCCA 59.757 50.000 0.00 0.00 0.00 3.86
3182 3796 3.117246 TCGGTAGATTGTACTCCCTCCAT 60.117 47.826 0.00 0.00 0.00 3.41
3183 3797 3.256136 CGGTAGATTGTACTCCCTCCATC 59.744 52.174 0.00 0.00 0.00 3.51
3184 3798 3.579151 GGTAGATTGTACTCCCTCCATCC 59.421 52.174 0.00 0.00 0.00 3.51
3185 3799 2.695585 AGATTGTACTCCCTCCATCCC 58.304 52.381 0.00 0.00 0.00 3.85
3186 3800 2.022035 AGATTGTACTCCCTCCATCCCA 60.022 50.000 0.00 0.00 0.00 4.37
3187 3801 2.352561 TTGTACTCCCTCCATCCCAA 57.647 50.000 0.00 0.00 0.00 4.12
3188 3802 2.352561 TGTACTCCCTCCATCCCAAA 57.647 50.000 0.00 0.00 0.00 3.28
3189 3803 2.638325 TGTACTCCCTCCATCCCAAAA 58.362 47.619 0.00 0.00 0.00 2.44
3190 3804 3.197983 TGTACTCCCTCCATCCCAAAAT 58.802 45.455 0.00 0.00 0.00 1.82
3191 3805 4.376223 TGTACTCCCTCCATCCCAAAATA 58.624 43.478 0.00 0.00 0.00 1.40
3192 3806 4.791334 TGTACTCCCTCCATCCCAAAATAA 59.209 41.667 0.00 0.00 0.00 1.40
3193 3807 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
3194 3808 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
3195 3809 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
3196 3810 3.855599 TCCCTCCATCCCAAAATAAGTGA 59.144 43.478 0.00 0.00 0.00 3.41
3197 3811 3.954258 CCCTCCATCCCAAAATAAGTGAC 59.046 47.826 0.00 0.00 0.00 3.67
3198 3812 4.325344 CCCTCCATCCCAAAATAAGTGACT 60.325 45.833 0.00 0.00 0.00 3.41
3199 3813 4.884164 CCTCCATCCCAAAATAAGTGACTC 59.116 45.833 0.00 0.00 0.00 3.36
3200 3814 4.513442 TCCATCCCAAAATAAGTGACTCG 58.487 43.478 0.00 0.00 0.00 4.18
3201 3815 4.224147 TCCATCCCAAAATAAGTGACTCGA 59.776 41.667 0.00 0.00 0.00 4.04
3202 3816 4.572389 CCATCCCAAAATAAGTGACTCGAG 59.428 45.833 11.84 11.84 0.00 4.04
3203 3817 4.202245 TCCCAAAATAAGTGACTCGAGG 57.798 45.455 18.41 0.00 0.00 4.63
3204 3818 3.055385 TCCCAAAATAAGTGACTCGAGGG 60.055 47.826 18.41 4.18 0.00 4.30
3205 3819 3.055385 CCCAAAATAAGTGACTCGAGGGA 60.055 47.826 18.41 0.00 34.49 4.20
3268 3882 2.183679 CTGAGCCTAAGGAGTTGGACT 58.816 52.381 0.00 0.00 0.00 3.85
3269 3883 1.902508 TGAGCCTAAGGAGTTGGACTG 59.097 52.381 0.00 0.00 0.00 3.51
3270 3884 1.903183 GAGCCTAAGGAGTTGGACTGT 59.097 52.381 0.00 0.00 0.00 3.55
3271 3885 1.625818 AGCCTAAGGAGTTGGACTGTG 59.374 52.381 0.00 0.00 0.00 3.66
3272 3886 1.339151 GCCTAAGGAGTTGGACTGTGG 60.339 57.143 0.00 0.00 0.00 4.17
3273 3887 1.978580 CCTAAGGAGTTGGACTGTGGT 59.021 52.381 0.00 0.00 0.00 4.16
3274 3888 2.289694 CCTAAGGAGTTGGACTGTGGTG 60.290 54.545 0.00 0.00 0.00 4.17
3282 3896 1.594293 GGACTGTGGTGTGTGGTCG 60.594 63.158 0.00 0.00 0.00 4.79
3307 3921 8.616076 CGAACCTGATTGCTAGATTAAAAGAAT 58.384 33.333 0.00 0.00 0.00 2.40
3329 3943 2.684001 AGTTTGAACTGACGGTGTCA 57.316 45.000 0.00 0.00 40.50 3.58
3330 3944 2.277084 AGTTTGAACTGACGGTGTCAC 58.723 47.619 0.00 0.00 37.67 3.67
3434 4048 5.771165 TGGACTCCCTGTAAATAAAAACACC 59.229 40.000 0.00 0.00 0.00 4.16
3457 4071 3.127030 GCAGCCAGTAATGAAACAGGTAC 59.873 47.826 0.00 0.00 0.00 3.34
3460 4074 3.370061 GCCAGTAATGAAACAGGTACGAC 59.630 47.826 0.00 0.00 0.00 4.34
3494 4108 4.858140 GCGGTAGTTGACTAAGAAGACTTC 59.142 45.833 7.14 7.14 37.53 3.01
3581 4196 5.205821 ACCAACCTAGCCCAATTTATTACC 58.794 41.667 0.00 0.00 0.00 2.85
3643 4259 3.700038 ACTTACTACCTGCTACGATTGCT 59.300 43.478 0.00 0.00 0.00 3.91
3644 4260 4.885907 ACTTACTACCTGCTACGATTGCTA 59.114 41.667 0.00 0.00 0.00 3.49
3645 4261 3.712091 ACTACCTGCTACGATTGCTAC 57.288 47.619 0.00 0.00 0.00 3.58
3646 4262 3.021695 ACTACCTGCTACGATTGCTACA 58.978 45.455 0.00 0.00 0.00 2.74
3647 4263 2.586258 ACCTGCTACGATTGCTACAG 57.414 50.000 0.00 0.00 0.00 2.74
3795 4411 3.832615 ACCAGTAACACCGAAGAAGTT 57.167 42.857 0.00 0.00 0.00 2.66
3798 4414 3.463944 CAGTAACACCGAAGAAGTTGGT 58.536 45.455 0.00 0.00 36.10 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.153449 TACATTGCGCCGGAGAAGG 60.153 57.895 10.31 4.96 0.00 3.46
1 2 1.752501 CGTACATTGCGCCGGAGAAG 61.753 60.000 10.31 0.00 0.00 2.85
2 3 1.807981 CGTACATTGCGCCGGAGAA 60.808 57.895 10.31 0.00 0.00 2.87
3 4 2.202690 CGTACATTGCGCCGGAGA 60.203 61.111 10.31 0.00 0.00 3.71
4 5 3.261951 CCGTACATTGCGCCGGAG 61.262 66.667 14.27 1.55 43.01 4.63
5 6 3.993376 GACCGTACATTGCGCCGGA 62.993 63.158 24.08 2.57 43.01 5.14
6 7 3.560278 GACCGTACATTGCGCCGG 61.560 66.667 17.23 17.23 45.72 6.13
7 8 3.908951 CGACCGTACATTGCGCCG 61.909 66.667 4.18 0.00 0.00 6.46
8 9 2.385091 AACGACCGTACATTGCGCC 61.385 57.895 4.18 0.00 0.00 6.53
9 10 1.225637 CAACGACCGTACATTGCGC 60.226 57.895 0.00 0.00 0.00 6.09
10 11 1.286354 ACCAACGACCGTACATTGCG 61.286 55.000 0.00 0.00 0.00 4.85
11 12 0.165079 CACCAACGACCGTACATTGC 59.835 55.000 0.00 0.00 0.00 3.56
12 13 0.793861 CCACCAACGACCGTACATTG 59.206 55.000 0.00 0.00 0.00 2.82
13 14 0.393820 ACCACCAACGACCGTACATT 59.606 50.000 0.00 0.00 0.00 2.71
14 15 0.320073 CACCACCAACGACCGTACAT 60.320 55.000 0.00 0.00 0.00 2.29
15 16 1.067749 CACCACCAACGACCGTACA 59.932 57.895 0.00 0.00 0.00 2.90
16 17 0.249405 TTCACCACCAACGACCGTAC 60.249 55.000 0.00 0.00 0.00 3.67
17 18 0.680618 ATTCACCACCAACGACCGTA 59.319 50.000 0.00 0.00 0.00 4.02
18 19 0.601841 GATTCACCACCAACGACCGT 60.602 55.000 0.00 0.00 0.00 4.83
19 20 1.296056 GGATTCACCACCAACGACCG 61.296 60.000 0.00 0.00 38.79 4.79
20 21 0.250553 TGGATTCACCACCAACGACC 60.251 55.000 0.00 0.00 44.64 4.79
21 22 3.315765 TGGATTCACCACCAACGAC 57.684 52.632 0.00 0.00 44.64 4.34
30 31 1.305930 GGCACCGTCTTGGATTCACC 61.306 60.000 0.00 0.00 42.00 4.02
31 32 0.321653 AGGCACCGTCTTGGATTCAC 60.322 55.000 0.00 0.00 42.00 3.18
32 33 0.321564 CAGGCACCGTCTTGGATTCA 60.322 55.000 0.00 0.00 42.00 2.57
33 34 0.321653 ACAGGCACCGTCTTGGATTC 60.322 55.000 0.00 0.00 42.00 2.52
34 35 0.321653 GACAGGCACCGTCTTGGATT 60.322 55.000 4.95 0.00 42.00 3.01
35 36 1.194781 AGACAGGCACCGTCTTGGAT 61.195 55.000 7.93 0.00 40.89 3.41
36 37 1.816863 GAGACAGGCACCGTCTTGGA 61.817 60.000 13.03 0.00 43.72 3.53
37 38 1.374758 GAGACAGGCACCGTCTTGG 60.375 63.158 13.03 0.00 43.72 3.61
38 39 1.734477 CGAGACAGGCACCGTCTTG 60.734 63.158 13.03 12.37 43.72 3.02
39 40 2.651361 CGAGACAGGCACCGTCTT 59.349 61.111 13.03 1.61 43.72 3.01
40 41 3.374402 CCGAGACAGGCACCGTCT 61.374 66.667 12.05 12.05 46.32 4.18
41 42 3.628280 GACCGAGACAGGCACCGTC 62.628 68.421 4.23 4.23 33.69 4.79
42 43 3.681835 GACCGAGACAGGCACCGT 61.682 66.667 0.00 0.00 33.69 4.83
43 44 4.778415 CGACCGAGACAGGCACCG 62.778 72.222 0.00 0.00 33.69 4.94
44 45 4.436998 CCGACCGAGACAGGCACC 62.437 72.222 0.00 0.00 33.69 5.01
45 46 2.615262 GATCCGACCGAGACAGGCAC 62.615 65.000 0.00 0.00 33.69 5.01
46 47 2.362503 ATCCGACCGAGACAGGCA 60.363 61.111 0.00 0.00 33.69 4.75
47 48 2.413765 GATCCGACCGAGACAGGC 59.586 66.667 0.00 0.00 33.69 4.85
48 49 1.818363 TCGATCCGACCGAGACAGG 60.818 63.158 0.00 0.00 37.30 4.00
49 50 3.809423 TCGATCCGACCGAGACAG 58.191 61.111 0.00 0.00 0.00 3.51
61 62 2.148558 GAGGATGGCGGGACTCGATC 62.149 65.000 0.00 0.00 42.43 3.69
62 63 2.123251 AGGATGGCGGGACTCGAT 60.123 61.111 0.00 0.00 42.43 3.59
63 64 2.833582 GAGGATGGCGGGACTCGA 60.834 66.667 0.00 0.00 42.43 4.04
64 65 2.427245 AAGAGGATGGCGGGACTCG 61.427 63.158 0.00 0.00 42.76 4.18
65 66 1.144936 CAAGAGGATGGCGGGACTC 59.855 63.158 0.00 0.00 0.00 3.36
66 67 3.036429 GCAAGAGGATGGCGGGACT 62.036 63.158 0.00 0.00 0.00 3.85
67 68 2.514824 GCAAGAGGATGGCGGGAC 60.515 66.667 0.00 0.00 0.00 4.46
68 69 3.797353 GGCAAGAGGATGGCGGGA 61.797 66.667 0.00 0.00 36.07 5.14
72 73 1.452833 GAGGTGGCAAGAGGATGGC 60.453 63.158 0.00 0.00 45.44 4.40
73 74 1.225704 GGAGGTGGCAAGAGGATGG 59.774 63.158 0.00 0.00 0.00 3.51
74 75 0.622665 AAGGAGGTGGCAAGAGGATG 59.377 55.000 0.00 0.00 0.00 3.51
75 76 1.376649 AAAGGAGGTGGCAAGAGGAT 58.623 50.000 0.00 0.00 0.00 3.24
76 77 1.909302 CTAAAGGAGGTGGCAAGAGGA 59.091 52.381 0.00 0.00 0.00 3.71
77 78 1.065126 CCTAAAGGAGGTGGCAAGAGG 60.065 57.143 0.00 0.00 40.98 3.69
78 79 2.409948 CCTAAAGGAGGTGGCAAGAG 57.590 55.000 0.00 0.00 40.98 2.85
88 89 1.133668 CCCCCTTGATGCCTAAAGGAG 60.134 57.143 6.70 0.00 44.93 3.69
89 90 0.926293 CCCCCTTGATGCCTAAAGGA 59.074 55.000 6.70 0.00 44.93 3.36
90 91 3.520623 CCCCCTTGATGCCTAAAGG 57.479 57.895 0.00 0.00 42.29 3.11
105 106 2.750237 GTCAACGCACCATCCCCC 60.750 66.667 0.00 0.00 0.00 5.40
106 107 3.124921 CGTCAACGCACCATCCCC 61.125 66.667 0.00 0.00 0.00 4.81
107 108 2.047655 TCGTCAACGCACCATCCC 60.048 61.111 0.00 0.00 39.60 3.85
108 109 2.100631 CCTCGTCAACGCACCATCC 61.101 63.158 0.00 0.00 39.60 3.51
109 110 2.100631 CCCTCGTCAACGCACCATC 61.101 63.158 0.00 0.00 39.60 3.51
110 111 2.047274 CCCTCGTCAACGCACCAT 60.047 61.111 0.00 0.00 39.60 3.55
111 112 2.709125 CTTCCCTCGTCAACGCACCA 62.709 60.000 0.00 0.00 39.60 4.17
112 113 2.027625 CTTCCCTCGTCAACGCACC 61.028 63.158 0.00 0.00 39.60 5.01
113 114 2.668280 GCTTCCCTCGTCAACGCAC 61.668 63.158 0.00 0.00 39.60 5.34
114 115 2.357034 GCTTCCCTCGTCAACGCA 60.357 61.111 0.00 0.00 39.60 5.24
115 116 1.668151 AAGCTTCCCTCGTCAACGC 60.668 57.895 0.00 0.00 39.60 4.84
116 117 1.291877 CCAAGCTTCCCTCGTCAACG 61.292 60.000 0.00 0.00 41.45 4.10
117 118 0.250338 ACCAAGCTTCCCTCGTCAAC 60.250 55.000 0.00 0.00 0.00 3.18
118 119 0.250295 CACCAAGCTTCCCTCGTCAA 60.250 55.000 0.00 0.00 0.00 3.18
119 120 1.371183 CACCAAGCTTCCCTCGTCA 59.629 57.895 0.00 0.00 0.00 4.35
120 121 1.376037 CCACCAAGCTTCCCTCGTC 60.376 63.158 0.00 0.00 0.00 4.20
121 122 2.750350 CCACCAAGCTTCCCTCGT 59.250 61.111 0.00 0.00 0.00 4.18
122 123 2.045926 CCCACCAAGCTTCCCTCG 60.046 66.667 0.00 0.00 0.00 4.63
123 124 1.301293 CTCCCACCAAGCTTCCCTC 59.699 63.158 0.00 0.00 0.00 4.30
124 125 2.911926 GCTCCCACCAAGCTTCCCT 61.912 63.158 0.00 0.00 36.80 4.20
125 126 2.361737 GCTCCCACCAAGCTTCCC 60.362 66.667 0.00 0.00 36.80 3.97
130 131 1.109323 AACAACAGCTCCCACCAAGC 61.109 55.000 0.00 0.00 40.14 4.01
131 132 0.954452 GAACAACAGCTCCCACCAAG 59.046 55.000 0.00 0.00 0.00 3.61
132 133 0.550914 AGAACAACAGCTCCCACCAA 59.449 50.000 0.00 0.00 0.00 3.67
133 134 0.550914 AAGAACAACAGCTCCCACCA 59.449 50.000 0.00 0.00 0.00 4.17
134 135 1.239347 GAAGAACAACAGCTCCCACC 58.761 55.000 0.00 0.00 0.00 4.61
135 136 0.868406 CGAAGAACAACAGCTCCCAC 59.132 55.000 0.00 0.00 0.00 4.61
136 137 0.250295 CCGAAGAACAACAGCTCCCA 60.250 55.000 0.00 0.00 0.00 4.37
137 138 0.034896 TCCGAAGAACAACAGCTCCC 59.965 55.000 0.00 0.00 0.00 4.30
138 139 1.433534 CTCCGAAGAACAACAGCTCC 58.566 55.000 0.00 0.00 0.00 4.70
139 140 1.270358 ACCTCCGAAGAACAACAGCTC 60.270 52.381 0.00 0.00 0.00 4.09
140 141 0.759346 ACCTCCGAAGAACAACAGCT 59.241 50.000 0.00 0.00 0.00 4.24
141 142 2.450609 TACCTCCGAAGAACAACAGC 57.549 50.000 0.00 0.00 0.00 4.40
142 143 3.741344 CAGTTACCTCCGAAGAACAACAG 59.259 47.826 0.00 0.00 0.00 3.16
143 144 3.493699 CCAGTTACCTCCGAAGAACAACA 60.494 47.826 0.00 0.00 0.00 3.33
144 145 3.064931 CCAGTTACCTCCGAAGAACAAC 58.935 50.000 0.00 0.00 0.00 3.32
145 146 2.549349 GCCAGTTACCTCCGAAGAACAA 60.549 50.000 0.00 0.00 0.00 2.83
146 147 1.001633 GCCAGTTACCTCCGAAGAACA 59.998 52.381 0.00 0.00 0.00 3.18
147 148 1.001633 TGCCAGTTACCTCCGAAGAAC 59.998 52.381 0.00 0.00 0.00 3.01
148 149 1.344065 TGCCAGTTACCTCCGAAGAA 58.656 50.000 0.00 0.00 0.00 2.52
149 150 1.480954 GATGCCAGTTACCTCCGAAGA 59.519 52.381 0.00 0.00 0.00 2.87
150 151 1.802880 CGATGCCAGTTACCTCCGAAG 60.803 57.143 0.00 0.00 0.00 3.79
151 152 0.174845 CGATGCCAGTTACCTCCGAA 59.825 55.000 0.00 0.00 0.00 4.30
152 153 1.672854 CCGATGCCAGTTACCTCCGA 61.673 60.000 0.00 0.00 0.00 4.55
153 154 1.227263 CCGATGCCAGTTACCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
154 155 0.179081 GACCGATGCCAGTTACCTCC 60.179 60.000 0.00 0.00 0.00 4.30
155 156 0.527817 CGACCGATGCCAGTTACCTC 60.528 60.000 0.00 0.00 0.00 3.85
156 157 0.968901 TCGACCGATGCCAGTTACCT 60.969 55.000 0.00 0.00 0.00 3.08
157 158 0.527817 CTCGACCGATGCCAGTTACC 60.528 60.000 0.00 0.00 0.00 2.85
158 159 0.454600 TCTCGACCGATGCCAGTTAC 59.545 55.000 0.00 0.00 0.00 2.50
159 160 0.454600 GTCTCGACCGATGCCAGTTA 59.545 55.000 0.00 0.00 0.00 2.24
160 161 1.215647 GTCTCGACCGATGCCAGTT 59.784 57.895 0.00 0.00 0.00 3.16
161 162 2.885861 GTCTCGACCGATGCCAGT 59.114 61.111 0.00 0.00 0.00 4.00
162 163 2.278206 CGTCTCGACCGATGCCAG 60.278 66.667 0.00 0.00 0.00 4.85
163 164 4.492160 GCGTCTCGACCGATGCCA 62.492 66.667 7.47 0.00 39.45 4.92
174 175 2.727684 GAAAACCTCGCCGCGTCTC 61.728 63.158 13.39 0.00 0.00 3.36
175 176 2.737376 GAAAACCTCGCCGCGTCT 60.737 61.111 13.39 0.00 0.00 4.18
176 177 4.130281 CGAAAACCTCGCCGCGTC 62.130 66.667 13.39 0.46 41.49 5.19
184 185 4.406972 ACCCTACCCTAATACGAAAACCTC 59.593 45.833 0.00 0.00 0.00 3.85
185 186 4.365368 ACCCTACCCTAATACGAAAACCT 58.635 43.478 0.00 0.00 0.00 3.50
186 187 4.406972 AGACCCTACCCTAATACGAAAACC 59.593 45.833 0.00 0.00 0.00 3.27
187 188 5.604758 AGACCCTACCCTAATACGAAAAC 57.395 43.478 0.00 0.00 0.00 2.43
188 189 6.625532 AAAGACCCTACCCTAATACGAAAA 57.374 37.500 0.00 0.00 0.00 2.29
189 190 6.408869 CAAAAGACCCTACCCTAATACGAAA 58.591 40.000 0.00 0.00 0.00 3.46
190 191 5.627503 GCAAAAGACCCTACCCTAATACGAA 60.628 44.000 0.00 0.00 0.00 3.85
191 192 4.141869 GCAAAAGACCCTACCCTAATACGA 60.142 45.833 0.00 0.00 0.00 3.43
192 193 4.124970 GCAAAAGACCCTACCCTAATACG 58.875 47.826 0.00 0.00 0.00 3.06
193 194 4.124970 CGCAAAAGACCCTACCCTAATAC 58.875 47.826 0.00 0.00 0.00 1.89
194 195 3.776417 ACGCAAAAGACCCTACCCTAATA 59.224 43.478 0.00 0.00 0.00 0.98
195 196 2.574824 ACGCAAAAGACCCTACCCTAAT 59.425 45.455 0.00 0.00 0.00 1.73
196 197 1.980036 ACGCAAAAGACCCTACCCTAA 59.020 47.619 0.00 0.00 0.00 2.69
197 198 1.551883 GACGCAAAAGACCCTACCCTA 59.448 52.381 0.00 0.00 0.00 3.53
198 199 0.323957 GACGCAAAAGACCCTACCCT 59.676 55.000 0.00 0.00 0.00 4.34
199 200 1.017701 CGACGCAAAAGACCCTACCC 61.018 60.000 0.00 0.00 0.00 3.69
200 201 0.320160 ACGACGCAAAAGACCCTACC 60.320 55.000 0.00 0.00 0.00 3.18
201 202 2.257034 CTACGACGCAAAAGACCCTAC 58.743 52.381 0.00 0.00 0.00 3.18
202 203 1.888512 ACTACGACGCAAAAGACCCTA 59.111 47.619 0.00 0.00 0.00 3.53
203 204 0.677842 ACTACGACGCAAAAGACCCT 59.322 50.000 0.00 0.00 0.00 4.34
204 205 1.193874 CAACTACGACGCAAAAGACCC 59.806 52.381 0.00 0.00 0.00 4.46
205 206 1.862827 ACAACTACGACGCAAAAGACC 59.137 47.619 0.00 0.00 0.00 3.85
206 207 2.283351 ACACAACTACGACGCAAAAGAC 59.717 45.455 0.00 0.00 0.00 3.01
207 208 2.536803 GACACAACTACGACGCAAAAGA 59.463 45.455 0.00 0.00 0.00 2.52
208 209 2.655577 CGACACAACTACGACGCAAAAG 60.656 50.000 0.00 0.00 0.00 2.27
209 210 1.255859 CGACACAACTACGACGCAAAA 59.744 47.619 0.00 0.00 0.00 2.44
210 211 0.847670 CGACACAACTACGACGCAAA 59.152 50.000 0.00 0.00 0.00 3.68
211 212 0.248580 ACGACACAACTACGACGCAA 60.249 50.000 0.00 0.00 0.00 4.85
212 213 0.248580 AACGACACAACTACGACGCA 60.249 50.000 0.00 0.00 0.00 5.24
213 214 0.158096 CAACGACACAACTACGACGC 59.842 55.000 0.00 0.00 0.00 5.19
214 215 1.469917 ACAACGACACAACTACGACG 58.530 50.000 0.00 0.00 0.00 5.12
215 216 2.853594 TCAACAACGACACAACTACGAC 59.146 45.455 0.00 0.00 0.00 4.34
216 217 3.148026 TCAACAACGACACAACTACGA 57.852 42.857 0.00 0.00 0.00 3.43
217 218 3.362596 CCATCAACAACGACACAACTACG 60.363 47.826 0.00 0.00 0.00 3.51
218 219 3.558418 ACCATCAACAACGACACAACTAC 59.442 43.478 0.00 0.00 0.00 2.73
219 220 3.799366 ACCATCAACAACGACACAACTA 58.201 40.909 0.00 0.00 0.00 2.24
220 221 2.639065 ACCATCAACAACGACACAACT 58.361 42.857 0.00 0.00 0.00 3.16
221 222 3.105203 CAACCATCAACAACGACACAAC 58.895 45.455 0.00 0.00 0.00 3.32
222 223 2.750166 ACAACCATCAACAACGACACAA 59.250 40.909 0.00 0.00 0.00 3.33
223 224 2.353269 GACAACCATCAACAACGACACA 59.647 45.455 0.00 0.00 0.00 3.72
224 225 2.612212 AGACAACCATCAACAACGACAC 59.388 45.455 0.00 0.00 0.00 3.67
225 226 2.912771 AGACAACCATCAACAACGACA 58.087 42.857 0.00 0.00 0.00 4.35
226 227 3.963383 AAGACAACCATCAACAACGAC 57.037 42.857 0.00 0.00 0.00 4.34
227 228 3.066064 CCAAAGACAACCATCAACAACGA 59.934 43.478 0.00 0.00 0.00 3.85
228 229 3.066064 TCCAAAGACAACCATCAACAACG 59.934 43.478 0.00 0.00 0.00 4.10
229 230 4.097892 AGTCCAAAGACAACCATCAACAAC 59.902 41.667 0.00 0.00 46.15 3.32
230 231 4.277476 AGTCCAAAGACAACCATCAACAA 58.723 39.130 0.00 0.00 46.15 2.83
231 232 3.897239 AGTCCAAAGACAACCATCAACA 58.103 40.909 0.00 0.00 46.15 3.33
232 233 4.083271 GCTAGTCCAAAGACAACCATCAAC 60.083 45.833 0.00 0.00 46.15 3.18
233 234 4.072131 GCTAGTCCAAAGACAACCATCAA 58.928 43.478 0.00 0.00 46.15 2.57
234 235 3.559171 GGCTAGTCCAAAGACAACCATCA 60.559 47.826 0.00 0.00 46.15 3.07
235 236 3.010420 GGCTAGTCCAAAGACAACCATC 58.990 50.000 0.00 0.00 46.15 3.51
236 237 2.615493 CGGCTAGTCCAAAGACAACCAT 60.615 50.000 4.43 0.00 46.15 3.55
237 238 1.270625 CGGCTAGTCCAAAGACAACCA 60.271 52.381 4.43 0.00 46.15 3.67
238 239 1.439679 CGGCTAGTCCAAAGACAACC 58.560 55.000 4.43 0.00 46.15 3.77
239 240 1.270678 ACCGGCTAGTCCAAAGACAAC 60.271 52.381 0.00 0.00 46.15 3.32
240 241 1.053424 ACCGGCTAGTCCAAAGACAA 58.947 50.000 0.00 0.00 46.15 3.18
241 242 1.053424 AACCGGCTAGTCCAAAGACA 58.947 50.000 0.00 0.00 46.15 3.41
242 243 1.270678 ACAACCGGCTAGTCCAAAGAC 60.271 52.381 0.00 0.00 43.89 3.01
243 244 1.053424 ACAACCGGCTAGTCCAAAGA 58.947 50.000 0.00 0.00 34.01 2.52
244 245 1.156736 CACAACCGGCTAGTCCAAAG 58.843 55.000 0.00 0.00 34.01 2.77
245 246 0.250553 CCACAACCGGCTAGTCCAAA 60.251 55.000 0.00 0.00 34.01 3.28
246 247 1.122632 TCCACAACCGGCTAGTCCAA 61.123 55.000 0.00 0.00 34.01 3.53
247 248 1.534476 TCCACAACCGGCTAGTCCA 60.534 57.895 0.00 0.00 34.01 4.02
248 249 1.218316 CTCCACAACCGGCTAGTCC 59.782 63.158 0.00 0.00 0.00 3.85
249 250 0.389948 CACTCCACAACCGGCTAGTC 60.390 60.000 0.00 0.00 0.00 2.59
250 251 1.671742 CACTCCACAACCGGCTAGT 59.328 57.895 0.00 0.00 0.00 2.57
251 252 1.079127 CCACTCCACAACCGGCTAG 60.079 63.158 0.00 0.00 0.00 3.42
252 253 2.589157 CCCACTCCACAACCGGCTA 61.589 63.158 0.00 0.00 0.00 3.93
253 254 3.953775 CCCACTCCACAACCGGCT 61.954 66.667 0.00 0.00 0.00 5.52
257 258 3.248446 TAGCGCCCACTCCACAACC 62.248 63.158 2.29 0.00 0.00 3.77
258 259 2.033194 GTAGCGCCCACTCCACAAC 61.033 63.158 2.29 0.00 0.00 3.32
259 260 2.345991 GTAGCGCCCACTCCACAA 59.654 61.111 2.29 0.00 0.00 3.33
260 261 4.063967 CGTAGCGCCCACTCCACA 62.064 66.667 2.29 0.00 0.00 4.17
273 274 0.179282 GTTGCGAACAACGAGCGTAG 60.179 55.000 0.00 0.00 46.20 3.51
274 275 1.847975 GTTGCGAACAACGAGCGTA 59.152 52.632 0.00 0.00 46.20 4.42
275 276 2.624264 GTTGCGAACAACGAGCGT 59.376 55.556 0.00 0.00 46.20 5.07
282 283 1.259507 GCTACAACTCGTTGCGAACAA 59.740 47.619 9.55 0.00 44.03 2.83
283 284 0.856641 GCTACAACTCGTTGCGAACA 59.143 50.000 9.55 0.00 44.03 3.18
284 285 0.163146 GGCTACAACTCGTTGCGAAC 59.837 55.000 9.55 0.00 45.94 3.95
285 286 1.279527 CGGCTACAACTCGTTGCGAA 61.280 55.000 9.55 0.00 45.94 4.70
286 287 1.731613 CGGCTACAACTCGTTGCGA 60.732 57.895 9.55 0.00 45.94 5.10
287 288 1.941476 GACGGCTACAACTCGTTGCG 61.941 60.000 9.55 7.62 45.94 4.85
288 289 1.623973 GGACGGCTACAACTCGTTGC 61.624 60.000 9.55 0.00 44.03 4.17
289 290 0.038526 AGGACGGCTACAACTCGTTG 60.039 55.000 8.16 8.16 45.58 4.10
290 291 0.038526 CAGGACGGCTACAACTCGTT 60.039 55.000 0.00 0.00 37.25 3.85
291 292 1.177256 ACAGGACGGCTACAACTCGT 61.177 55.000 0.00 0.00 39.99 4.18
292 293 0.806868 TACAGGACGGCTACAACTCG 59.193 55.000 0.00 0.00 0.00 4.18
293 294 1.817447 AGTACAGGACGGCTACAACTC 59.183 52.381 0.00 0.00 0.00 3.01
294 295 1.920610 AGTACAGGACGGCTACAACT 58.079 50.000 0.00 0.00 0.00 3.16
295 296 2.288640 ACAAGTACAGGACGGCTACAAC 60.289 50.000 0.00 0.00 0.00 3.32
296 297 1.965643 ACAAGTACAGGACGGCTACAA 59.034 47.619 0.00 0.00 0.00 2.41
297 298 1.624336 ACAAGTACAGGACGGCTACA 58.376 50.000 0.00 0.00 0.00 2.74
298 299 3.855689 TTACAAGTACAGGACGGCTAC 57.144 47.619 0.00 0.00 0.00 3.58
299 300 4.439153 CGAATTACAAGTACAGGACGGCTA 60.439 45.833 0.00 0.00 0.00 3.93
300 301 3.675228 CGAATTACAAGTACAGGACGGCT 60.675 47.826 0.00 0.00 0.00 5.52
301 302 2.601763 CGAATTACAAGTACAGGACGGC 59.398 50.000 0.00 0.00 0.00 5.68
302 303 2.601763 GCGAATTACAAGTACAGGACGG 59.398 50.000 0.00 0.00 0.00 4.79
303 304 3.508762 AGCGAATTACAAGTACAGGACG 58.491 45.455 0.00 0.00 0.00 4.79
304 305 5.169295 AGAAGCGAATTACAAGTACAGGAC 58.831 41.667 0.00 0.00 0.00 3.85
305 306 5.401531 AGAAGCGAATTACAAGTACAGGA 57.598 39.130 0.00 0.00 0.00 3.86
306 307 5.869888 AGAAGAAGCGAATTACAAGTACAGG 59.130 40.000 0.00 0.00 0.00 4.00
307 308 6.366332 ACAGAAGAAGCGAATTACAAGTACAG 59.634 38.462 0.00 0.00 0.00 2.74
308 309 6.220930 ACAGAAGAAGCGAATTACAAGTACA 58.779 36.000 0.00 0.00 0.00 2.90
309 310 6.707599 ACAGAAGAAGCGAATTACAAGTAC 57.292 37.500 0.00 0.00 0.00 2.73
310 311 8.821147 TTTACAGAAGAAGCGAATTACAAGTA 57.179 30.769 0.00 0.00 0.00 2.24
311 312 7.095187 CCTTTACAGAAGAAGCGAATTACAAGT 60.095 37.037 0.00 0.00 0.00 3.16
312 313 7.095187 ACCTTTACAGAAGAAGCGAATTACAAG 60.095 37.037 0.00 0.00 0.00 3.16
313 314 6.708949 ACCTTTACAGAAGAAGCGAATTACAA 59.291 34.615 0.00 0.00 0.00 2.41
314 315 6.228258 ACCTTTACAGAAGAAGCGAATTACA 58.772 36.000 0.00 0.00 0.00 2.41
315 316 6.723131 ACCTTTACAGAAGAAGCGAATTAC 57.277 37.500 0.00 0.00 0.00 1.89
316 317 8.879759 CAATACCTTTACAGAAGAAGCGAATTA 58.120 33.333 0.00 0.00 0.00 1.40
317 318 7.390718 ACAATACCTTTACAGAAGAAGCGAATT 59.609 33.333 0.00 0.00 0.00 2.17
318 319 6.879458 ACAATACCTTTACAGAAGAAGCGAAT 59.121 34.615 0.00 0.00 0.00 3.34
319 320 6.228258 ACAATACCTTTACAGAAGAAGCGAA 58.772 36.000 0.00 0.00 0.00 4.70
320 321 5.790593 ACAATACCTTTACAGAAGAAGCGA 58.209 37.500 0.00 0.00 0.00 4.93
321 322 6.588756 TGTACAATACCTTTACAGAAGAAGCG 59.411 38.462 0.00 0.00 0.00 4.68
322 323 7.386848 TGTGTACAATACCTTTACAGAAGAAGC 59.613 37.037 0.00 0.00 0.00 3.86
323 324 8.827177 TGTGTACAATACCTTTACAGAAGAAG 57.173 34.615 0.00 0.00 0.00 2.85
324 325 9.787435 ATTGTGTACAATACCTTTACAGAAGAA 57.213 29.630 8.40 0.00 44.09 2.52
325 326 9.787435 AATTGTGTACAATACCTTTACAGAAGA 57.213 29.630 10.37 0.00 45.06 2.87
328 329 8.293867 GCAAATTGTGTACAATACCTTTACAGA 58.706 33.333 10.37 0.00 45.06 3.41
329 330 7.270365 CGCAAATTGTGTACAATACCTTTACAG 59.730 37.037 10.37 0.00 45.06 2.74
330 331 7.078851 CGCAAATTGTGTACAATACCTTTACA 58.921 34.615 10.37 0.00 45.06 2.41
331 332 7.079475 ACGCAAATTGTGTACAATACCTTTAC 58.921 34.615 10.76 0.00 45.06 2.01
332 333 7.204496 ACGCAAATTGTGTACAATACCTTTA 57.796 32.000 10.76 0.00 45.06 1.85
333 334 6.079424 ACGCAAATTGTGTACAATACCTTT 57.921 33.333 10.76 0.36 45.06 3.11
334 335 5.699097 ACGCAAATTGTGTACAATACCTT 57.301 34.783 10.76 0.00 45.06 3.50
343 344 3.247442 CCGAGAGTACGCAAATTGTGTA 58.753 45.455 14.58 14.58 41.83 2.90
344 345 2.066262 CCGAGAGTACGCAAATTGTGT 58.934 47.619 16.68 16.68 44.22 3.72
345 346 1.393539 CCCGAGAGTACGCAAATTGTG 59.606 52.381 4.83 4.83 0.00 3.33
346 347 1.274167 TCCCGAGAGTACGCAAATTGT 59.726 47.619 0.00 0.00 0.00 2.71
347 348 2.004583 TCCCGAGAGTACGCAAATTG 57.995 50.000 0.00 0.00 0.00 2.32
348 349 2.754946 TTCCCGAGAGTACGCAAATT 57.245 45.000 0.00 0.00 0.00 1.82
349 350 2.754946 TTTCCCGAGAGTACGCAAAT 57.245 45.000 0.00 0.00 0.00 2.32
350 351 2.529780 TTTTCCCGAGAGTACGCAAA 57.470 45.000 0.00 0.00 0.00 3.68
351 352 2.529780 TTTTTCCCGAGAGTACGCAA 57.470 45.000 0.00 0.00 0.00 4.85
374 375 9.463443 CCAAACCATAGAAAACTTTTCTAACAG 57.537 33.333 22.19 16.81 34.99 3.16
375 376 8.973182 ACCAAACCATAGAAAACTTTTCTAACA 58.027 29.630 22.19 7.61 34.99 2.41
378 379 9.629878 TGTACCAAACCATAGAAAACTTTTCTA 57.370 29.630 21.11 21.11 35.71 2.10
379 380 8.528044 TGTACCAAACCATAGAAAACTTTTCT 57.472 30.769 18.57 18.57 0.00 2.52
380 381 9.589111 TTTGTACCAAACCATAGAAAACTTTTC 57.411 29.630 6.18 6.18 0.00 2.29
381 382 9.373603 GTTTGTACCAAACCATAGAAAACTTTT 57.626 29.630 8.32 0.00 0.00 2.27
382 383 7.703197 CGTTTGTACCAAACCATAGAAAACTTT 59.297 33.333 12.73 0.00 0.00 2.66
383 384 7.148035 ACGTTTGTACCAAACCATAGAAAACTT 60.148 33.333 12.73 0.00 0.00 2.66
384 385 6.319405 ACGTTTGTACCAAACCATAGAAAACT 59.681 34.615 12.73 0.00 0.00 2.66
385 386 6.497437 ACGTTTGTACCAAACCATAGAAAAC 58.503 36.000 12.73 2.62 0.00 2.43
386 387 6.696441 ACGTTTGTACCAAACCATAGAAAA 57.304 33.333 12.73 0.00 0.00 2.29
387 388 7.188468 GTACGTTTGTACCAAACCATAGAAA 57.812 36.000 12.73 0.00 44.25 2.52
388 389 6.783892 GTACGTTTGTACCAAACCATAGAA 57.216 37.500 12.73 0.00 44.25 2.10
437 439 5.067413 TCCTCTCACGTACTCCATGTATTTC 59.933 44.000 0.00 0.00 33.23 2.17
438 440 4.954202 TCCTCTCACGTACTCCATGTATTT 59.046 41.667 0.00 0.00 33.23 1.40
445 447 1.476891 GCAATCCTCTCACGTACTCCA 59.523 52.381 0.00 0.00 0.00 3.86
488 493 0.959867 TACGGCGCTGTGGTGTAGTA 60.960 55.000 31.70 6.07 0.00 1.82
489 494 2.270257 TACGGCGCTGTGGTGTAGT 61.270 57.895 31.70 4.39 0.00 2.73
490 495 1.804326 GTACGGCGCTGTGGTGTAG 60.804 63.158 31.70 2.80 0.00 2.74
491 496 2.259204 GTACGGCGCTGTGGTGTA 59.741 61.111 31.70 8.59 0.00 2.90
494 499 4.675029 GTGGTACGGCGCTGTGGT 62.675 66.667 31.70 14.80 0.00 4.16
513 518 1.607178 TTTCTGCGTCCGGGGTCTA 60.607 57.895 0.00 0.00 0.00 2.59
610 648 2.111878 GGGTCTGTGCTGTGCTGT 59.888 61.111 0.00 0.00 0.00 4.40
626 674 4.717313 TGCTGCTGCTGCCTCTGG 62.717 66.667 25.44 0.00 40.48 3.86
639 687 1.745864 CCTCTTCTGCCTGCTGCTG 60.746 63.158 0.00 0.00 42.00 4.41
640 688 1.486997 TTCCTCTTCTGCCTGCTGCT 61.487 55.000 0.00 0.00 42.00 4.24
724 781 1.833860 TTGGCGCAAACTTTTTCTCG 58.166 45.000 10.83 0.00 0.00 4.04
884 1307 0.996762 GGAGGAGGAGAGAGAGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
960 1412 4.794439 CAGATCACACGCCCGCGA 62.794 66.667 17.16 0.00 42.83 5.87
963 1415 3.490759 GCACAGATCACACGCCCG 61.491 66.667 0.00 0.00 0.00 6.13
964 1416 3.490759 CGCACAGATCACACGCCC 61.491 66.667 0.00 0.00 0.00 6.13
965 1417 3.490759 CCGCACAGATCACACGCC 61.491 66.667 0.00 0.00 0.00 5.68
966 1418 4.152625 GCCGCACAGATCACACGC 62.153 66.667 0.00 0.00 0.00 5.34
969 1421 1.737735 CTTCGCCGCACAGATCACA 60.738 57.895 0.00 0.00 0.00 3.58
970 1422 3.084579 CTTCGCCGCACAGATCAC 58.915 61.111 0.00 0.00 0.00 3.06
971 1423 2.815211 GCTTCGCCGCACAGATCA 60.815 61.111 0.00 0.00 0.00 2.92
972 1424 3.567797 GGCTTCGCCGCACAGATC 61.568 66.667 0.00 0.00 39.62 2.75
989 1441 1.003442 TCCTCCATCCCACCTCAGG 59.997 63.158 0.00 0.00 0.00 3.86
990 1442 1.694133 GCTCCTCCATCCCACCTCAG 61.694 65.000 0.00 0.00 0.00 3.35
993 1445 2.367512 GGCTCCTCCATCCCACCT 60.368 66.667 0.00 0.00 34.01 4.00
1379 1849 3.882025 GAGCGAAACTCAGGGCAG 58.118 61.111 0.00 0.00 45.49 4.85
1562 2073 2.294074 TGAAGTTGTACAGTGGTTGGC 58.706 47.619 0.00 0.00 0.00 4.52
1576 2087 6.321435 AGGGACGAAGAAAGAAAAATGAAGTT 59.679 34.615 0.00 0.00 0.00 2.66
1581 2092 5.689383 TCAGGGACGAAGAAAGAAAAATG 57.311 39.130 0.00 0.00 0.00 2.32
1583 2094 6.512741 CGAATTCAGGGACGAAGAAAGAAAAA 60.513 38.462 6.22 0.00 0.00 1.94
1633 2144 1.600957 CTTGTCAGTCTGCAACCACAG 59.399 52.381 0.00 0.00 39.12 3.66
1665 2199 1.338337 AGATACTCAATGGCCTCGTCG 59.662 52.381 3.32 0.00 0.00 5.12
1822 2378 3.018149 GGACAACACCCACAGTAAAACA 58.982 45.455 0.00 0.00 0.00 2.83
1870 2426 5.828299 TTTCCCCAGCATTAATTACTTCG 57.172 39.130 0.00 0.00 0.00 3.79
1911 2467 2.031870 AGAAAACAGAAAGTGGCCACC 58.968 47.619 32.29 17.25 0.00 4.61
1965 2553 4.218417 AGCATTACAAATCCCAGTGTGAAC 59.782 41.667 0.00 0.00 0.00 3.18
1972 2560 5.840243 TTGATCAGCATTACAAATCCCAG 57.160 39.130 0.00 0.00 0.00 4.45
2027 2615 0.609151 CATTTGCCCAAGTGCATCCA 59.391 50.000 0.00 0.00 41.70 3.41
2078 2671 4.408921 AGCACCTACCAACTGAATATAGCA 59.591 41.667 0.00 0.00 0.00 3.49
2079 2672 4.962155 AGCACCTACCAACTGAATATAGC 58.038 43.478 0.00 0.00 0.00 2.97
2178 2771 5.184892 AGACAGCATCTGTAGGGAAAAAT 57.815 39.130 0.00 0.00 45.44 1.82
2182 2775 4.546674 TCATAGACAGCATCTGTAGGGAA 58.453 43.478 0.00 0.00 45.44 3.97
2183 2776 4.141158 TCTCATAGACAGCATCTGTAGGGA 60.141 45.833 0.00 0.00 45.44 4.20
2236 2829 2.842394 TAGGCTCAAGCGCTGCAGAC 62.842 60.000 20.43 12.78 43.26 3.51
2241 2834 1.371337 TTGCATAGGCTCAAGCGCTG 61.371 55.000 12.58 5.47 43.26 5.18
2255 2848 3.187637 GCAAACATTTGTGATGCTTGCAT 59.812 39.130 17.40 7.91 45.30 3.96
2290 2883 1.746615 CGCCACATTCCTCCCACTG 60.747 63.158 0.00 0.00 0.00 3.66
2332 2925 1.268625 GAACTTTGGTTTACAGGCGGG 59.731 52.381 0.00 0.00 35.58 6.13
2335 2928 3.219281 TCCTGAACTTTGGTTTACAGGC 58.781 45.455 0.00 0.00 42.43 4.85
2366 2959 3.681897 GGAGAATTCATCGGATCGAATGG 59.318 47.826 8.44 0.00 39.99 3.16
2444 3037 1.048601 AAGTGAAACGGAGGCTCTGA 58.951 50.000 29.39 4.21 45.86 3.27
2526 3119 9.575868 CCTCAGTACAATAGAAGAGATAAGGTA 57.424 37.037 0.00 0.00 0.00 3.08
2527 3120 7.014808 GCCTCAGTACAATAGAAGAGATAAGGT 59.985 40.741 0.00 0.00 0.00 3.50
2528 3121 7.232534 AGCCTCAGTACAATAGAAGAGATAAGG 59.767 40.741 0.00 0.00 0.00 2.69
2529 3122 8.177119 AGCCTCAGTACAATAGAAGAGATAAG 57.823 38.462 0.00 0.00 0.00 1.73
2530 3123 8.540507 AAGCCTCAGTACAATAGAAGAGATAA 57.459 34.615 0.00 0.00 0.00 1.75
2531 3124 7.780271 TGAAGCCTCAGTACAATAGAAGAGATA 59.220 37.037 0.00 0.00 0.00 1.98
2532 3125 6.609212 TGAAGCCTCAGTACAATAGAAGAGAT 59.391 38.462 0.00 0.00 0.00 2.75
2533 3126 5.952347 TGAAGCCTCAGTACAATAGAAGAGA 59.048 40.000 0.00 0.00 0.00 3.10
2534 3127 6.214191 TGAAGCCTCAGTACAATAGAAGAG 57.786 41.667 0.00 0.00 0.00 2.85
2535 3128 5.127845 CCTGAAGCCTCAGTACAATAGAAGA 59.872 44.000 11.35 0.00 46.71 2.87
2537 3130 5.023452 TCCTGAAGCCTCAGTACAATAGAA 58.977 41.667 11.35 0.00 46.71 2.10
2538 3131 4.610333 TCCTGAAGCCTCAGTACAATAGA 58.390 43.478 11.35 0.00 46.71 1.98
2539 3132 5.127845 TCTTCCTGAAGCCTCAGTACAATAG 59.872 44.000 11.35 0.37 46.71 1.73
2553 3164 6.914757 GTGTTGTGAGAAAAATCTTCCTGAAG 59.085 38.462 0.31 0.31 39.71 3.02
2578 3189 5.273170 TCAACTTCAAAACAGAAGAATGCG 58.727 37.500 10.37 0.00 46.18 4.73
2598 3209 4.698201 TTATATCCCCTCGCAACATCAA 57.302 40.909 0.00 0.00 0.00 2.57
2627 3238 3.118482 CCTGAGCTGATGTTAGGTGATGT 60.118 47.826 0.00 0.00 0.00 3.06
2729 3340 6.892456 TGGCATTAATATGAAAAGGTGTGGTA 59.108 34.615 0.00 0.00 33.37 3.25
2767 3381 5.449553 AGTTCATCTTGTTTCCTTCAAGGT 58.550 37.500 2.50 0.00 41.52 3.50
2814 3428 5.100259 GCATCCATCAAAATGAGTGTTCAG 58.900 41.667 0.00 0.00 36.61 3.02
2910 3524 4.409901 TGACTGATTGGCTCTTCATCCATA 59.590 41.667 0.00 0.00 31.54 2.74
2915 3529 3.015327 GCTTGACTGATTGGCTCTTCAT 58.985 45.455 0.00 0.00 0.00 2.57
3153 3767 3.703052 GAGTACAATCTACCGAGGGGAAA 59.297 47.826 0.00 0.00 36.97 3.13
3156 3770 1.962100 GGAGTACAATCTACCGAGGGG 59.038 57.143 0.00 0.00 40.11 4.79
3170 3784 3.953542 ATTTTGGGATGGAGGGAGTAC 57.046 47.619 0.00 0.00 0.00 2.73
3171 3785 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
3172 3786 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
3173 3787 4.079787 TCACTTATTTTGGGATGGAGGGAG 60.080 45.833 0.00 0.00 0.00 4.30
3174 3788 3.855599 TCACTTATTTTGGGATGGAGGGA 59.144 43.478 0.00 0.00 0.00 4.20
3175 3789 3.954258 GTCACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
3176 3790 4.860022 AGTCACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
3177 3791 4.572389 CGAGTCACTTATTTTGGGATGGAG 59.428 45.833 0.00 0.00 0.00 3.86
3178 3792 4.224147 TCGAGTCACTTATTTTGGGATGGA 59.776 41.667 0.00 0.00 0.00 3.41
3179 3793 4.513442 TCGAGTCACTTATTTTGGGATGG 58.487 43.478 0.00 0.00 0.00 3.51
3180 3794 4.572389 CCTCGAGTCACTTATTTTGGGATG 59.428 45.833 12.31 0.00 0.00 3.51
3181 3795 4.384208 CCCTCGAGTCACTTATTTTGGGAT 60.384 45.833 12.31 0.00 33.14 3.85
3182 3796 3.055385 CCCTCGAGTCACTTATTTTGGGA 60.055 47.826 12.31 0.00 33.14 4.37
3183 3797 3.055385 TCCCTCGAGTCACTTATTTTGGG 60.055 47.826 12.31 1.14 0.00 4.12
3184 3798 4.184629 CTCCCTCGAGTCACTTATTTTGG 58.815 47.826 12.31 0.51 0.00 3.28
3185 3799 4.822026 ACTCCCTCGAGTCACTTATTTTG 58.178 43.478 12.31 0.00 46.90 2.44
3186 3800 6.600882 TTACTCCCTCGAGTCACTTATTTT 57.399 37.500 12.31 0.00 46.90 1.82
3187 3801 6.600882 TTTACTCCCTCGAGTCACTTATTT 57.399 37.500 12.31 0.00 46.90 1.40
3188 3802 6.600882 TTTTACTCCCTCGAGTCACTTATT 57.399 37.500 12.31 0.00 46.90 1.40
3189 3803 6.014840 TGTTTTTACTCCCTCGAGTCACTTAT 60.015 38.462 12.31 0.00 46.90 1.73
3190 3804 5.302568 TGTTTTTACTCCCTCGAGTCACTTA 59.697 40.000 12.31 0.00 46.90 2.24
3191 3805 4.100498 TGTTTTTACTCCCTCGAGTCACTT 59.900 41.667 12.31 0.00 46.90 3.16
3192 3806 3.640029 TGTTTTTACTCCCTCGAGTCACT 59.360 43.478 12.31 0.00 46.90 3.41
3193 3807 3.986277 TGTTTTTACTCCCTCGAGTCAC 58.014 45.455 12.31 0.00 46.90 3.67
3194 3808 4.675976 TTGTTTTTACTCCCTCGAGTCA 57.324 40.909 12.31 0.00 46.90 3.41
3195 3809 5.055144 ACTTTGTTTTTACTCCCTCGAGTC 58.945 41.667 12.31 0.00 46.90 3.36
3197 3811 5.526111 TGAACTTTGTTTTTACTCCCTCGAG 59.474 40.000 5.13 5.13 42.32 4.04
3198 3812 5.430007 TGAACTTTGTTTTTACTCCCTCGA 58.570 37.500 0.00 0.00 0.00 4.04
3199 3813 5.744666 TGAACTTTGTTTTTACTCCCTCG 57.255 39.130 0.00 0.00 0.00 4.63
3200 3814 5.520632 GCTGAACTTTGTTTTTACTCCCTC 58.479 41.667 0.00 0.00 0.00 4.30
3201 3815 4.036380 CGCTGAACTTTGTTTTTACTCCCT 59.964 41.667 0.00 0.00 0.00 4.20
3202 3816 4.287720 CGCTGAACTTTGTTTTTACTCCC 58.712 43.478 0.00 0.00 0.00 4.30
3203 3817 3.729217 GCGCTGAACTTTGTTTTTACTCC 59.271 43.478 0.00 0.00 0.00 3.85
3204 3818 4.347813 TGCGCTGAACTTTGTTTTTACTC 58.652 39.130 9.73 0.00 0.00 2.59
3205 3819 4.364415 TGCGCTGAACTTTGTTTTTACT 57.636 36.364 9.73 0.00 0.00 2.24
3268 3882 1.153329 GGTTCGACCACACACCACA 60.153 57.895 0.00 0.00 38.42 4.17
3269 3883 1.145377 AGGTTCGACCACACACCAC 59.855 57.895 4.61 0.00 41.95 4.16
3270 3884 1.145156 CAGGTTCGACCACACACCA 59.855 57.895 4.61 0.00 41.95 4.17
3271 3885 0.034896 ATCAGGTTCGACCACACACC 59.965 55.000 6.78 0.57 41.95 4.16
3272 3886 1.531149 CAATCAGGTTCGACCACACAC 59.469 52.381 6.78 0.00 41.95 3.82
3273 3887 1.877637 CAATCAGGTTCGACCACACA 58.122 50.000 6.78 0.00 41.95 3.72
3274 3888 0.517316 GCAATCAGGTTCGACCACAC 59.483 55.000 6.78 0.00 41.95 3.82
3307 3921 5.010314 AGTGACACCGTCAGTTCAAACTATA 59.990 40.000 0.84 0.00 42.73 1.31
3329 3943 6.211584 ACATCCTAGACAACATGACAGTAAGT 59.788 38.462 0.00 0.00 0.00 2.24
3330 3944 6.533012 CACATCCTAGACAACATGACAGTAAG 59.467 42.308 0.00 0.00 0.00 2.34
3434 4048 1.131126 CCTGTTTCATTACTGGCTGCG 59.869 52.381 0.00 0.00 31.59 5.18
3457 4071 1.844357 CTACCGCATGTCTAAACGTCG 59.156 52.381 0.00 0.00 0.00 5.12
3460 4074 3.060363 GTCAACTACCGCATGTCTAAACG 59.940 47.826 0.00 0.00 0.00 3.60
3494 4108 3.929417 TGAACCGATTAAATTACGCCG 57.071 42.857 0.00 0.00 0.00 6.46
3581 4196 5.854866 CAGTTGATGATGTTACAAAGCACTG 59.145 40.000 0.00 0.00 0.00 3.66
3643 4259 8.740123 TTGTTCTTTTGATCCAACTTACTGTA 57.260 30.769 0.00 0.00 0.00 2.74
3644 4260 7.639113 TTGTTCTTTTGATCCAACTTACTGT 57.361 32.000 0.00 0.00 0.00 3.55
3678 4294 7.042051 GCTTCGTTAAGATATAGGAATGCACAA 60.042 37.037 0.00 0.00 34.37 3.33
3679 4295 6.423905 GCTTCGTTAAGATATAGGAATGCACA 59.576 38.462 0.00 0.00 34.37 4.57
3798 4414 4.081185 TCATCCTGCCTTCGCGCA 62.081 61.111 8.75 0.00 38.08 6.09
3817 4433 1.313772 AGATCGCTGAGCTACGTCAT 58.686 50.000 1.78 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.