Multiple sequence alignment - TraesCS7B01G025500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G025500 chr7B 100.000 5306 0 0 1 5306 24057258 24062563 0.000000e+00 9799.0
1 TraesCS7B01G025500 chr7B 81.873 822 116 20 1 803 411326276 411325469 0.000000e+00 662.0
2 TraesCS7B01G025500 chr7B 100.000 43 0 0 5074 5116 24062288 24062330 4.410000e-11 80.5
3 TraesCS7B01G025500 chr7B 100.000 43 0 0 5031 5073 24062331 24062373 4.410000e-11 80.5
4 TraesCS7B01G025500 chr7D 92.492 3663 184 45 882 4504 77396562 77400173 0.000000e+00 5156.0
5 TraesCS7B01G025500 chr7D 88.600 500 44 6 4572 5058 77413279 77413778 3.540000e-166 595.0
6 TraesCS7B01G025500 chr7D 77.851 605 96 21 3009 3610 76918419 76917850 1.830000e-89 340.0
7 TraesCS7B01G025500 chr7D 94.811 212 10 1 2057 2268 110645804 110646014 3.960000e-86 329.0
8 TraesCS7B01G025500 chr7D 85.978 271 23 11 4239 4498 76942243 76941977 5.230000e-70 276.0
9 TraesCS7B01G025500 chr7D 87.234 235 20 6 5074 5306 77413751 77413977 5.270000e-65 259.0
10 TraesCS7B01G025500 chr7D 82.051 195 18 8 4509 4698 76959507 76959325 3.310000e-32 150.0
11 TraesCS7B01G025500 chr7D 74.273 447 61 31 4361 4766 76977963 76977530 7.170000e-29 139.0
12 TraesCS7B01G025500 chr7D 90.000 90 7 1 3022 3111 76783019 76782932 1.210000e-21 115.0
13 TraesCS7B01G025500 chr7D 89.773 88 9 0 5219 5306 88881849 88881936 4.340000e-21 113.0
14 TraesCS7B01G025500 chr7D 90.588 85 8 0 5222 5306 305120396 305120312 4.340000e-21 113.0
15 TraesCS7B01G025500 chr7D 88.525 61 7 0 4099 4159 76934931 76934871 2.050000e-09 75.0
16 TraesCS7B01G025500 chr7D 91.489 47 4 0 4141 4187 76934858 76934812 1.230000e-06 65.8
17 TraesCS7B01G025500 chr7A 93.184 2142 119 17 1618 3755 81101956 81104074 0.000000e+00 3121.0
18 TraesCS7B01G025500 chr7A 93.270 847 38 11 3794 4626 81104073 81104914 0.000000e+00 1230.0
19 TraesCS7B01G025500 chr7A 88.462 572 33 19 867 1410 81101218 81101784 0.000000e+00 660.0
20 TraesCS7B01G025500 chr7A 93.868 212 12 1 2057 2268 29869871 29870081 8.580000e-83 318.0
21 TraesCS7B01G025500 chr7A 83.249 197 18 6 4874 5070 81105783 81105964 3.290000e-37 167.0
22 TraesCS7B01G025500 chr7A 85.263 95 13 1 4066 4159 80866969 80866875 4.370000e-16 97.1
23 TraesCS7B01G025500 chr7A 97.727 44 1 0 4140 4183 80866862 80866819 5.700000e-10 76.8
24 TraesCS7B01G025500 chr5D 84.217 811 94 22 1 803 456605724 456604940 0.000000e+00 758.0
25 TraesCS7B01G025500 chr5D 76.923 234 41 6 5074 5303 501441511 501441735 2.600000e-23 121.0
26 TraesCS7B01G025500 chr2D 83.518 813 94 19 1 798 649125000 649125787 0.000000e+00 723.0
27 TraesCS7B01G025500 chr2D 83.974 780 93 17 38 803 7094494 7093733 0.000000e+00 719.0
28 TraesCS7B01G025500 chr2D 85.410 658 78 11 38 689 547244521 547243876 0.000000e+00 667.0
29 TraesCS7B01G025500 chr2D 95.312 128 5 1 2141 2268 619109843 619109969 9.010000e-48 202.0
30 TraesCS7B01G025500 chr2D 78.903 237 37 6 5074 5306 55160499 55160726 1.190000e-31 148.0
31 TraesCS7B01G025500 chr6D 85.592 701 80 13 1 687 411196993 411196300 0.000000e+00 715.0
32 TraesCS7B01G025500 chr6D 82.039 824 105 21 1 803 294098707 294097906 0.000000e+00 662.0
33 TraesCS7B01G025500 chr6D 86.747 83 11 0 5224 5306 380559160 380559242 5.660000e-15 93.5
34 TraesCS7B01G025500 chr4D 82.874 835 106 21 1 814 152896400 152895582 0.000000e+00 715.0
35 TraesCS7B01G025500 chr4D 84.005 769 90 18 2 762 477542498 477541755 0.000000e+00 708.0
36 TraesCS7B01G025500 chr4D 83.240 179 28 2 619 795 388921401 388921223 4.250000e-36 163.0
37 TraesCS7B01G025500 chr4D 81.579 190 26 9 619 803 50458084 50457899 1.190000e-31 148.0
38 TraesCS7B01G025500 chr1A 81.350 815 115 19 1 803 349349972 349350761 3.490000e-176 628.0
39 TraesCS7B01G025500 chr1A 84.676 509 66 8 254 753 451848863 451849368 1.030000e-136 497.0
40 TraesCS7B01G025500 chr6B 80.870 805 112 24 1 794 498671141 498671914 3.540000e-166 595.0
41 TraesCS7B01G025500 chr6B 89.520 229 10 3 1092 1308 24746688 24746914 1.460000e-70 278.0
42 TraesCS7B01G025500 chr4A 80.357 784 108 28 19 767 499019558 499020330 2.160000e-153 553.0
43 TraesCS7B01G025500 chr4A 90.717 237 9 5 1092 1315 644676767 644677003 2.400000e-78 303.0
44 TraesCS7B01G025500 chr4A 90.717 237 9 6 1092 1315 644725220 644725456 2.400000e-78 303.0
45 TraesCS7B01G025500 chr4A 90.295 237 10 5 1092 1315 696217458 696217694 1.120000e-76 298.0
46 TraesCS7B01G025500 chr4A 85.714 168 13 4 5141 5306 579426273 579426431 3.290000e-37 167.0
47 TraesCS7B01G025500 chr4B 84.035 570 81 5 1 564 404909348 404908783 1.680000e-149 540.0
48 TraesCS7B01G025500 chr4B 91.775 231 12 5 1092 1316 352355774 352356003 1.110000e-81 315.0
49 TraesCS7B01G025500 chr4B 90.295 237 11 7 1092 1316 218596009 218595773 3.110000e-77 300.0
50 TraesCS7B01G025500 chr4B 87.395 119 6 3 1618 1736 365506853 365506962 1.550000e-25 128.0
51 TraesCS7B01G025500 chr3B 85.251 339 25 13 1125 1449 510237838 510238165 5.120000e-85 326.0
52 TraesCS7B01G025500 chr5B 93.182 220 13 2 2057 2275 20974881 20975099 6.630000e-84 322.0
53 TraesCS7B01G025500 chr5B 92.661 218 15 1 2057 2274 539174257 539174041 3.990000e-81 313.0
54 TraesCS7B01G025500 chr5B 89.030 237 13 5 1092 1315 458891686 458891922 1.130000e-71 281.0
55 TraesCS7B01G025500 chr5B 86.920 237 17 7 1092 1315 187565724 187565489 2.450000e-63 254.0
56 TraesCS7B01G025500 chr2B 93.119 218 14 1 2057 2274 756117371 756117155 8.580000e-83 318.0
57 TraesCS7B01G025500 chr2B 81.250 160 21 3 5147 5306 521983722 521983872 2.600000e-23 121.0
58 TraesCS7B01G025500 chr2A 93.868 212 12 1 2057 2268 64497877 64498087 8.580000e-83 318.0
59 TraesCS7B01G025500 chr2A 84.615 182 24 3 625 803 776482784 776482964 1.520000e-40 178.0
60 TraesCS7B01G025500 chr5A 93.396 212 13 1 2057 2268 702534679 702534889 3.990000e-81 313.0
61 TraesCS7B01G025500 chr5A 89.873 237 11 7 1092 1315 542384428 542384664 5.200000e-75 292.0
62 TraesCS7B01G025500 chr1B 93.237 207 13 1 2057 2263 114349646 114349851 2.400000e-78 303.0
63 TraesCS7B01G025500 chr1B 91.284 218 18 1 2057 2274 553831820 553831604 4.020000e-76 296.0
64 TraesCS7B01G025500 chr1B 88.208 212 10 6 2057 2268 42583851 42584047 6.870000e-59 239.0
65 TraesCS7B01G025500 chr1D 91.743 218 12 4 2057 2274 265707328 265707117 1.120000e-76 298.0
66 TraesCS7B01G025500 chr1D 81.818 187 30 4 619 803 476458564 476458380 2.560000e-33 154.0
67 TraesCS7B01G025500 chr1D 80.864 162 22 6 5145 5306 256108316 256108468 9.330000e-23 119.0
68 TraesCS7B01G025500 chr3D 79.343 213 34 7 5095 5306 416141559 416141356 1.990000e-29 141.0
69 TraesCS7B01G025500 chr3A 77.682 233 36 6 5074 5305 467094164 467094381 1.550000e-25 128.0
70 TraesCS7B01G025500 chr6A 77.778 180 30 7 5128 5306 521988836 521989006 9.400000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G025500 chr7B 24057258 24062563 5305 False 3320.0 9799 100.00000 1 5306 3 chr7B.!!$F1 5305
1 TraesCS7B01G025500 chr7B 411325469 411326276 807 True 662.0 662 81.87300 1 803 1 chr7B.!!$R1 802
2 TraesCS7B01G025500 chr7D 77396562 77400173 3611 False 5156.0 5156 92.49200 882 4504 1 chr7D.!!$F1 3622
3 TraesCS7B01G025500 chr7D 77413279 77413977 698 False 427.0 595 87.91700 4572 5306 2 chr7D.!!$F4 734
4 TraesCS7B01G025500 chr7D 76917850 76918419 569 True 340.0 340 77.85100 3009 3610 1 chr7D.!!$R2 601
5 TraesCS7B01G025500 chr7A 81101218 81105964 4746 False 1294.5 3121 89.54125 867 5070 4 chr7A.!!$F2 4203
6 TraesCS7B01G025500 chr5D 456604940 456605724 784 True 758.0 758 84.21700 1 803 1 chr5D.!!$R1 802
7 TraesCS7B01G025500 chr2D 649125000 649125787 787 False 723.0 723 83.51800 1 798 1 chr2D.!!$F3 797
8 TraesCS7B01G025500 chr2D 7093733 7094494 761 True 719.0 719 83.97400 38 803 1 chr2D.!!$R1 765
9 TraesCS7B01G025500 chr2D 547243876 547244521 645 True 667.0 667 85.41000 38 689 1 chr2D.!!$R2 651
10 TraesCS7B01G025500 chr6D 411196300 411196993 693 True 715.0 715 85.59200 1 687 1 chr6D.!!$R2 686
11 TraesCS7B01G025500 chr6D 294097906 294098707 801 True 662.0 662 82.03900 1 803 1 chr6D.!!$R1 802
12 TraesCS7B01G025500 chr4D 152895582 152896400 818 True 715.0 715 82.87400 1 814 1 chr4D.!!$R2 813
13 TraesCS7B01G025500 chr4D 477541755 477542498 743 True 708.0 708 84.00500 2 762 1 chr4D.!!$R4 760
14 TraesCS7B01G025500 chr1A 349349972 349350761 789 False 628.0 628 81.35000 1 803 1 chr1A.!!$F1 802
15 TraesCS7B01G025500 chr1A 451848863 451849368 505 False 497.0 497 84.67600 254 753 1 chr1A.!!$F2 499
16 TraesCS7B01G025500 chr6B 498671141 498671914 773 False 595.0 595 80.87000 1 794 1 chr6B.!!$F2 793
17 TraesCS7B01G025500 chr4A 499019558 499020330 772 False 553.0 553 80.35700 19 767 1 chr4A.!!$F1 748
18 TraesCS7B01G025500 chr4B 404908783 404909348 565 True 540.0 540 84.03500 1 564 1 chr4B.!!$R2 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 985 0.179100 CTCAGTGTAGCATCCCACCG 60.179 60.0 0.00 0.0 31.88 4.94 F
1648 1816 0.175073 GAATCCTCGGTAAGGCGTGT 59.825 55.0 0.00 0.0 45.78 4.49 F
1882 2063 0.322008 AGCTGGAAAAGAAGAGGCCG 60.322 55.0 0.00 0.0 0.00 6.13 F
3729 3933 0.543174 AGAGAGTCAGACACCACCCC 60.543 60.0 2.66 0.0 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2207 2388 1.337354 TGCCGACGAATAAACTCTGCA 60.337 47.619 0.00 0.0 0.00 4.41 R
2912 3098 0.941542 TCTTTTTCGCACCAGGAACG 59.058 50.000 0.00 0.0 0.00 3.95 R
3755 3993 0.037326 GTTCGTCCTGACATGGCTCA 60.037 55.000 0.00 0.0 0.00 4.26 R
5089 5970 0.033601 TTGTGCACAGACAAGGGGTT 60.034 50.000 20.59 0.0 32.05 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.824489 ATCTCCGCGTCGAGCTCA 60.824 61.111 15.40 0.00 45.59 4.26
39 40 2.493907 GAAGAGCGCGTTGGACTCCT 62.494 60.000 8.43 0.00 0.00 3.69
40 41 2.771763 AAGAGCGCGTTGGACTCCTG 62.772 60.000 8.43 0.00 0.00 3.86
43 44 2.811317 CGCGTTGGACTCCTGCTC 60.811 66.667 0.00 0.00 0.00 4.26
45 46 3.059982 CGTTGGACTCCTGCTCCA 58.940 61.111 0.00 0.00 35.91 3.86
46 47 1.599047 CGTTGGACTCCTGCTCCAT 59.401 57.895 0.00 0.00 37.65 3.41
65 71 4.324991 GGAGGAACGCCCGGTTGT 62.325 66.667 0.00 0.00 44.71 3.32
156 162 3.692406 GGTCAACTCCGCCTCCGT 61.692 66.667 0.00 0.00 0.00 4.69
180 201 1.978617 CCAAGTTGAAGGCGGGCAT 60.979 57.895 3.87 0.00 0.00 4.40
352 395 2.440247 TGCTGGATCTCGGAGCGA 60.440 61.111 0.00 0.00 35.36 4.93
431 476 1.782028 GAGCGTGGGCGAAGTGTTTT 61.782 55.000 0.00 0.00 46.35 2.43
434 479 0.938713 CGTGGGCGAAGTGTTTTACA 59.061 50.000 0.00 0.00 41.33 2.41
436 481 0.948678 TGGGCGAAGTGTTTTACAGC 59.051 50.000 0.00 0.00 0.00 4.40
440 485 1.262151 GCGAAGTGTTTTACAGCGGAA 59.738 47.619 0.00 0.00 0.00 4.30
445 490 3.805207 AGTGTTTTACAGCGGAAAGAGT 58.195 40.909 0.00 0.00 0.00 3.24
471 516 2.781406 GGGAGAGGGAGGAGGTGT 59.219 66.667 0.00 0.00 0.00 4.16
525 583 2.036731 GGGTGGGTTAGGGTTGCC 59.963 66.667 0.00 0.00 0.00 4.52
526 584 2.847650 GGGTGGGTTAGGGTTGCCA 61.848 63.158 0.00 0.00 0.00 4.92
741 833 3.661648 GGCTGGATGTGGGGGTGT 61.662 66.667 0.00 0.00 0.00 4.16
762 854 0.599204 GGTCAGTCCGAGCGTTTGAA 60.599 55.000 0.00 0.00 31.26 2.69
764 856 0.671796 TCAGTCCGAGCGTTTGAAGA 59.328 50.000 0.00 0.00 0.00 2.87
816 908 8.420374 AAAAATCATGACGTATATGTCGAGTT 57.580 30.769 18.06 13.00 41.87 3.01
817 909 8.420374 AAAATCATGACGTATATGTCGAGTTT 57.580 30.769 18.06 16.98 41.87 2.66
818 910 6.993175 ATCATGACGTATATGTCGAGTTTG 57.007 37.500 18.06 11.16 41.87 2.93
819 911 6.126568 TCATGACGTATATGTCGAGTTTGA 57.873 37.500 18.06 12.82 41.87 2.69
820 912 6.199393 TCATGACGTATATGTCGAGTTTGAG 58.801 40.000 18.06 4.35 41.87 3.02
821 913 5.806366 TGACGTATATGTCGAGTTTGAGA 57.194 39.130 18.06 0.00 41.87 3.27
822 914 5.807344 TGACGTATATGTCGAGTTTGAGAG 58.193 41.667 18.06 0.00 41.87 3.20
823 915 5.171147 ACGTATATGTCGAGTTTGAGAGG 57.829 43.478 8.66 0.00 0.00 3.69
824 916 4.639310 ACGTATATGTCGAGTTTGAGAGGT 59.361 41.667 8.66 0.00 0.00 3.85
825 917 5.206299 CGTATATGTCGAGTTTGAGAGGTC 58.794 45.833 0.00 0.00 0.00 3.85
826 918 4.657436 ATATGTCGAGTTTGAGAGGTCC 57.343 45.455 0.00 0.00 0.00 4.46
827 919 1.699730 TGTCGAGTTTGAGAGGTCCA 58.300 50.000 0.00 0.00 0.00 4.02
828 920 1.613925 TGTCGAGTTTGAGAGGTCCAG 59.386 52.381 0.00 0.00 0.00 3.86
829 921 0.603569 TCGAGTTTGAGAGGTCCAGC 59.396 55.000 0.00 0.00 0.00 4.85
830 922 0.605589 CGAGTTTGAGAGGTCCAGCT 59.394 55.000 0.00 0.00 0.00 4.24
831 923 1.819288 CGAGTTTGAGAGGTCCAGCTA 59.181 52.381 0.00 0.00 0.00 3.32
832 924 2.428890 CGAGTTTGAGAGGTCCAGCTAT 59.571 50.000 0.00 0.00 0.00 2.97
833 925 3.632604 CGAGTTTGAGAGGTCCAGCTATA 59.367 47.826 0.00 0.00 0.00 1.31
834 926 4.279671 CGAGTTTGAGAGGTCCAGCTATAT 59.720 45.833 0.00 0.00 0.00 0.86
835 927 5.473846 CGAGTTTGAGAGGTCCAGCTATATA 59.526 44.000 0.00 0.00 0.00 0.86
836 928 6.348950 CGAGTTTGAGAGGTCCAGCTATATAG 60.349 46.154 5.30 5.30 0.00 1.31
837 929 6.615617 AGTTTGAGAGGTCCAGCTATATAGA 58.384 40.000 14.16 0.00 0.00 1.98
838 930 7.245292 AGTTTGAGAGGTCCAGCTATATAGAT 58.755 38.462 14.16 4.00 0.00 1.98
839 931 7.178274 AGTTTGAGAGGTCCAGCTATATAGATG 59.822 40.741 19.07 19.07 39.31 2.90
864 956 8.730680 TGGTCTTAAGATTAGAATTCTGTTTGC 58.269 33.333 18.47 3.27 0.00 3.68
865 957 8.951243 GGTCTTAAGATTAGAATTCTGTTTGCT 58.049 33.333 18.47 5.44 0.00 3.91
871 963 8.854614 AGATTAGAATTCTGTTTGCTTAGTGT 57.145 30.769 18.47 0.00 0.00 3.55
872 964 8.940952 AGATTAGAATTCTGTTTGCTTAGTGTC 58.059 33.333 18.47 0.00 0.00 3.67
873 965 8.621532 ATTAGAATTCTGTTTGCTTAGTGTCA 57.378 30.769 18.47 0.00 0.00 3.58
874 966 6.305693 AGAATTCTGTTTGCTTAGTGTCAC 57.694 37.500 7.30 0.00 0.00 3.67
875 967 6.058183 AGAATTCTGTTTGCTTAGTGTCACT 58.942 36.000 7.30 10.99 0.00 3.41
876 968 5.931441 ATTCTGTTTGCTTAGTGTCACTC 57.069 39.130 9.26 0.00 0.00 3.51
877 969 4.400529 TCTGTTTGCTTAGTGTCACTCA 57.599 40.909 9.26 0.00 0.00 3.41
878 970 4.371786 TCTGTTTGCTTAGTGTCACTCAG 58.628 43.478 9.26 9.37 0.00 3.35
879 971 4.122776 CTGTTTGCTTAGTGTCACTCAGT 58.877 43.478 9.26 0.00 0.00 3.41
892 984 0.905357 ACTCAGTGTAGCATCCCACC 59.095 55.000 0.00 0.00 31.88 4.61
893 985 0.179100 CTCAGTGTAGCATCCCACCG 60.179 60.000 0.00 0.00 31.88 4.94
894 986 1.815421 CAGTGTAGCATCCCACCGC 60.815 63.158 0.00 0.00 31.88 5.68
898 990 1.078426 GTAGCATCCCACCGCAAGT 60.078 57.895 0.00 0.00 0.00 3.16
911 1003 1.860078 GCAAGTCTCGAACCCAACG 59.140 57.895 0.00 0.00 0.00 4.10
928 1021 2.418983 ACGAGAAGAGTCCACGTTTC 57.581 50.000 0.00 0.00 34.97 2.78
1363 1485 0.679002 TCTCGGTCACGGAGTTAGGG 60.679 60.000 11.83 0.00 41.61 3.53
1419 1541 3.542648 GGTGGGCAGGTTAAGTAGAATC 58.457 50.000 0.00 0.00 0.00 2.52
1438 1560 1.135489 TCTCGCGTGCTCGTTTTATCT 60.135 47.619 5.77 0.00 39.49 1.98
1443 1565 2.532317 GCGTGCTCGTTTTATCTCTCTC 59.468 50.000 10.18 0.00 39.49 3.20
1445 1567 4.032355 CGTGCTCGTTTTATCTCTCTCTC 58.968 47.826 0.00 0.00 0.00 3.20
1483 1631 2.237143 CTGAGGCAACCAGGAATCAGTA 59.763 50.000 0.00 0.00 32.99 2.74
1484 1632 2.237143 TGAGGCAACCAGGAATCAGTAG 59.763 50.000 0.00 0.00 37.17 2.57
1485 1633 2.237392 GAGGCAACCAGGAATCAGTAGT 59.763 50.000 0.00 0.00 37.17 2.73
1486 1634 3.450904 AGGCAACCAGGAATCAGTAGTA 58.549 45.455 0.00 0.00 37.17 1.82
1487 1635 3.452627 AGGCAACCAGGAATCAGTAGTAG 59.547 47.826 0.00 0.00 37.17 2.57
1488 1636 3.432326 GGCAACCAGGAATCAGTAGTAGG 60.432 52.174 0.00 0.00 0.00 3.18
1611 1770 2.548057 ACGACCATGCTAAAACACACAG 59.452 45.455 0.00 0.00 0.00 3.66
1616 1775 3.305335 CCATGCTAAAACACACAGTTCCC 60.305 47.826 0.00 0.00 40.26 3.97
1646 1814 0.460311 CTGAATCCTCGGTAAGGCGT 59.540 55.000 0.00 0.00 45.78 5.68
1648 1816 0.175073 GAATCCTCGGTAAGGCGTGT 59.825 55.000 0.00 0.00 45.78 4.49
1673 1846 2.714991 TAGCTGCAGAGACGCTGGG 61.715 63.158 20.43 0.00 45.03 4.45
1678 1851 4.504916 CAGAGACGCTGGGCCGAG 62.505 72.222 10.99 10.99 41.07 4.63
1679 1852 4.742649 AGAGACGCTGGGCCGAGA 62.743 66.667 20.35 0.00 0.00 4.04
1680 1853 4.500116 GAGACGCTGGGCCGAGAC 62.500 72.222 20.35 8.96 0.00 3.36
1828 2008 9.640963 CTTACTACTGTACTGTTCTTTTATGCT 57.359 33.333 10.89 0.00 0.00 3.79
1882 2063 0.322008 AGCTGGAAAAGAAGAGGCCG 60.322 55.000 0.00 0.00 0.00 6.13
1935 2116 1.768870 CCTGGATATGAAAGTCCCCGT 59.231 52.381 0.00 0.00 33.45 5.28
1959 2140 1.675219 GGAAGCGAGTGGTTGGGTA 59.325 57.895 0.00 0.00 35.57 3.69
2027 2208 3.973206 TTCCAACTTCTTCGGCAGATA 57.027 42.857 0.00 0.00 0.00 1.98
2041 2222 3.303461 CGGCAGATACTCTGTACTCTTCG 60.303 52.174 6.06 0.00 45.94 3.79
2060 2241 1.605202 CGGTTTTTGCACCCATCTTGG 60.605 52.381 0.00 0.00 37.25 3.61
2065 2246 1.909700 TTGCACCCATCTTGGTCTTC 58.090 50.000 0.00 0.00 36.12 2.87
2068 2249 1.952367 GCACCCATCTTGGTCTTCCTG 60.952 57.143 0.00 0.00 36.12 3.86
2087 2268 4.518970 TCCTGTGCTGACATTCTTTTTACC 59.481 41.667 0.00 0.00 0.00 2.85
2172 2353 1.118838 AGCAGAGCAGGTGGAGTATC 58.881 55.000 0.00 0.00 0.00 2.24
2194 2375 3.548770 TGAAGCATTTCAGGGCAGATAG 58.451 45.455 0.00 0.00 38.37 2.08
2229 2410 2.285834 GCAGAGTTTATTCGTCGGCATG 60.286 50.000 0.00 0.00 32.42 4.06
2309 2490 4.168760 GTGACCTTGATGCACTTATTTGC 58.831 43.478 0.00 0.00 43.31 3.68
2330 2512 8.477984 TTTGCCTTGCATTCTTATTTATTGTC 57.522 30.769 0.00 0.00 38.76 3.18
2595 2777 6.366061 TCGTTCATGAAGTTGTGAGATACTTG 59.634 38.462 8.80 0.00 34.88 3.16
2631 2813 6.206042 AGGTGGAGGAGTAAGTCATTCTTAT 58.794 40.000 0.00 0.00 40.23 1.73
2672 2854 7.546358 TCTCACATGTGAATTTGAAACTTGTT 58.454 30.769 27.63 0.00 39.39 2.83
2770 2952 5.801380 TGGACTATCTGGTTTAGGTTTCAC 58.199 41.667 0.00 0.00 0.00 3.18
2870 3056 1.001641 ATCTGTGCCACTCCTTGCC 60.002 57.895 0.00 0.00 0.00 4.52
2912 3098 2.691011 GAGAGTGTGGGATCCTGTACTC 59.309 54.545 23.48 23.48 35.88 2.59
2924 3110 0.732880 CTGTACTCGTTCCTGGTGCG 60.733 60.000 0.00 0.00 0.00 5.34
3106 3292 4.750021 TGCTCTCTTGCATGAGTCTATT 57.250 40.909 24.31 0.00 38.12 1.73
3179 3367 8.089115 ACTGCAACTCATTTTCTAAAGTCTAC 57.911 34.615 0.00 0.00 0.00 2.59
3230 3418 4.816385 TCAAAATGGTCAGCCGATAAGATC 59.184 41.667 0.00 0.00 37.67 2.75
3231 3419 3.409026 AATGGTCAGCCGATAAGATCC 57.591 47.619 0.00 0.00 37.67 3.36
3318 3506 2.180086 ACTGGAGAGGTATGCCCAGATA 59.820 50.000 13.50 0.00 46.84 1.98
3360 3549 9.632638 ATTTGTTATAGTCATGTTCCTGCTAAT 57.367 29.630 0.00 0.00 0.00 1.73
3405 3594 7.441836 TGAGAGTAGACTTTGTAGCATTTTGA 58.558 34.615 0.00 0.00 0.00 2.69
3464 3653 1.679139 TAATGAGATGGGGCAAAGCG 58.321 50.000 0.00 0.00 0.00 4.68
3651 3850 4.812626 ACCAACGTTAACTTAGGTTGACAG 59.187 41.667 19.49 7.78 43.16 3.51
3663 3862 4.373156 AGGTTGACAGTGCTCCTTTTAT 57.627 40.909 0.00 0.00 0.00 1.40
3691 3891 1.992557 TGGTATTCAGGGCAAGGACTT 59.007 47.619 0.00 0.00 0.00 3.01
3724 3928 6.215495 AGCTATTAAAGAGAGTCAGACACC 57.785 41.667 2.66 0.00 0.00 4.16
3729 3933 0.543174 AGAGAGTCAGACACCACCCC 60.543 60.000 2.66 0.00 0.00 4.95
3759 3997 4.736739 GGTAACCTTGGGGTGAGC 57.263 61.111 0.00 0.00 46.67 4.26
3760 3998 1.001269 GGTAACCTTGGGGTGAGCC 60.001 63.158 0.00 0.00 46.67 4.70
3761 3999 1.765074 GTAACCTTGGGGTGAGCCA 59.235 57.895 1.97 0.00 46.67 4.75
3762 4000 0.331616 GTAACCTTGGGGTGAGCCAT 59.668 55.000 1.97 0.00 46.67 4.40
3763 4001 0.331278 TAACCTTGGGGTGAGCCATG 59.669 55.000 1.97 0.00 46.67 3.66
3764 4002 1.729267 AACCTTGGGGTGAGCCATGT 61.729 55.000 1.97 0.00 46.67 3.21
3765 4003 1.379044 CCTTGGGGTGAGCCATGTC 60.379 63.158 1.97 0.00 36.17 3.06
3766 4004 1.379916 CTTGGGGTGAGCCATGTCA 59.620 57.895 1.97 0.00 36.17 3.58
3767 4005 0.679002 CTTGGGGTGAGCCATGTCAG 60.679 60.000 1.97 0.00 36.17 3.51
3768 4006 2.141011 TTGGGGTGAGCCATGTCAGG 62.141 60.000 1.97 0.00 36.17 3.86
3769 4007 2.300967 GGGGTGAGCCATGTCAGGA 61.301 63.158 1.97 0.00 36.17 3.86
3770 4008 1.078143 GGGTGAGCCATGTCAGGAC 60.078 63.158 0.00 0.00 36.17 3.85
3771 4009 1.448540 GGTGAGCCATGTCAGGACG 60.449 63.158 0.00 0.00 34.09 4.79
3772 4010 1.591703 GTGAGCCATGTCAGGACGA 59.408 57.895 0.00 0.00 0.00 4.20
3773 4011 0.037326 GTGAGCCATGTCAGGACGAA 60.037 55.000 0.00 0.00 0.00 3.85
3774 4012 0.037326 TGAGCCATGTCAGGACGAAC 60.037 55.000 0.00 0.00 0.00 3.95
3775 4013 0.247736 GAGCCATGTCAGGACGAACT 59.752 55.000 0.00 0.00 0.00 3.01
3776 4014 0.687354 AGCCATGTCAGGACGAACTT 59.313 50.000 0.00 0.00 0.00 2.66
3777 4015 0.798776 GCCATGTCAGGACGAACTTG 59.201 55.000 0.00 0.00 0.00 3.16
3778 4016 1.878102 GCCATGTCAGGACGAACTTGT 60.878 52.381 0.00 0.00 0.00 3.16
3779 4017 1.800586 CCATGTCAGGACGAACTTGTG 59.199 52.381 0.00 0.00 0.00 3.33
3780 4018 1.195448 CATGTCAGGACGAACTTGTGC 59.805 52.381 0.00 0.00 0.00 4.57
3781 4019 0.176910 TGTCAGGACGAACTTGTGCA 59.823 50.000 0.00 0.00 31.86 4.57
3782 4020 1.295792 GTCAGGACGAACTTGTGCAA 58.704 50.000 0.00 0.00 31.86 4.08
3783 4021 1.873591 GTCAGGACGAACTTGTGCAAT 59.126 47.619 0.00 0.00 31.86 3.56
3784 4022 1.872952 TCAGGACGAACTTGTGCAATG 59.127 47.619 0.00 0.00 31.86 2.82
3785 4023 1.872952 CAGGACGAACTTGTGCAATGA 59.127 47.619 0.00 0.00 31.86 2.57
3786 4024 2.485426 CAGGACGAACTTGTGCAATGAT 59.515 45.455 0.00 0.00 31.86 2.45
3787 4025 3.684305 CAGGACGAACTTGTGCAATGATA 59.316 43.478 0.00 0.00 31.86 2.15
3788 4026 3.935203 AGGACGAACTTGTGCAATGATAG 59.065 43.478 0.00 0.00 31.86 2.08
3789 4027 3.932710 GGACGAACTTGTGCAATGATAGA 59.067 43.478 0.00 0.00 0.00 1.98
3790 4028 4.391830 GGACGAACTTGTGCAATGATAGAA 59.608 41.667 0.00 0.00 0.00 2.10
3791 4029 5.446473 GGACGAACTTGTGCAATGATAGAAG 60.446 44.000 0.00 0.00 0.00 2.85
3792 4030 5.237815 ACGAACTTGTGCAATGATAGAAGA 58.762 37.500 0.00 0.00 0.00 2.87
3793 4031 5.349817 ACGAACTTGTGCAATGATAGAAGAG 59.650 40.000 0.00 0.00 0.00 2.85
3794 4032 5.220548 CGAACTTGTGCAATGATAGAAGAGG 60.221 44.000 0.00 0.00 0.00 3.69
3800 4038 4.569966 GTGCAATGATAGAAGAGGACACTG 59.430 45.833 0.00 0.00 0.00 3.66
3825 4063 4.946038 GCACCCTATTGCGTACCA 57.054 55.556 0.00 0.00 31.51 3.25
3833 4071 5.763204 CACCCTATTGCGTACCAAGATATTT 59.237 40.000 3.68 0.00 36.76 1.40
3834 4072 5.763204 ACCCTATTGCGTACCAAGATATTTG 59.237 40.000 3.68 0.00 36.76 2.32
3854 4092 7.837202 ATTTGTTGCTTATGATTTGTCATGG 57.163 32.000 1.37 0.00 0.00 3.66
4039 4277 7.687941 TTGATCTTCTTCCCAACAAGATTAC 57.312 36.000 0.00 0.00 37.07 1.89
4098 4336 2.588877 GGCGATGTATGGCACGCT 60.589 61.111 17.11 0.00 42.65 5.07
4116 4354 1.721664 CTGATTGCATGCAGGTCCCG 61.722 60.000 21.50 12.35 0.00 5.14
4149 4387 3.562973 CGGTGTACTACGAGGACATGTAT 59.437 47.826 0.00 0.00 0.00 2.29
4278 4516 1.489481 TCGAGCATCTCATGGGTCTT 58.511 50.000 0.00 0.00 0.00 3.01
4325 4563 8.466798 GTTTTAGCCTTTTAGCTCATCCATAAA 58.533 33.333 0.00 0.00 43.67 1.40
4326 4564 8.766994 TTTAGCCTTTTAGCTCATCCATAAAT 57.233 30.769 0.00 0.00 43.67 1.40
4327 4565 9.860650 TTTAGCCTTTTAGCTCATCCATAAATA 57.139 29.630 0.00 0.00 43.67 1.40
4491 4729 2.162319 TGTTATGCACAGCTCGTTGA 57.838 45.000 0.00 0.00 0.00 3.18
4504 4742 2.926838 GCTCGTTGAGATCCTTCTGAAC 59.073 50.000 0.00 0.00 41.17 3.18
4507 4745 4.082845 TCGTTGAGATCCTTCTGAACTCT 58.917 43.478 4.31 1.23 42.05 3.24
4512 4763 7.257722 GTTGAGATCCTTCTGAACTCTAGAAG 58.742 42.308 7.58 7.58 46.76 2.85
4532 4783 6.653989 AGAAGTTCAGACAAAGAGGAAGAAA 58.346 36.000 5.50 0.00 0.00 2.52
4534 4785 6.934048 AGTTCAGACAAAGAGGAAGAAAAG 57.066 37.500 0.00 0.00 0.00 2.27
4538 4789 7.938140 TCAGACAAAGAGGAAGAAAAGAAAA 57.062 32.000 0.00 0.00 0.00 2.29
4570 4822 6.900194 CCCAAGAAAGGGTATCTGAATTCTA 58.100 40.000 7.05 0.00 44.24 2.10
4575 4827 7.521669 AGAAAGGGTATCTGAATTCTAATGGG 58.478 38.462 7.05 0.00 0.00 4.00
4636 4925 9.436957 AGTTCAGACTTTATGTTTCATATTCGT 57.563 29.630 0.00 0.00 29.87 3.85
4664 4958 5.838529 TCTGAAGACGAACTGTTATCACAA 58.161 37.500 0.00 0.00 30.36 3.33
4678 4972 7.503521 TGTTATCACAACAGAGTAAATTGCA 57.496 32.000 0.00 0.00 0.00 4.08
4692 4993 8.049117 AGAGTAAATTGCAAAGGATCATCTGTA 58.951 33.333 1.71 0.00 0.00 2.74
4707 5008 4.040339 TCATCTGTAAGTTCTGCTTCCACA 59.960 41.667 0.00 0.00 38.57 4.17
4713 5014 6.237901 TGTAAGTTCTGCTTCCACATTACAT 58.762 36.000 0.00 0.00 38.57 2.29
4719 5020 7.394359 AGTTCTGCTTCCACATTACATATTTGT 59.606 33.333 0.00 0.00 39.98 2.83
4730 5031 9.767684 CACATTACATATTTGTTTCGAAGCTTA 57.232 29.630 13.36 1.68 37.28 3.09
4745 5046 9.565213 TTTCGAAGCTTAAGTATACTACAGTTC 57.435 33.333 5.65 9.85 0.00 3.01
4770 5071 4.558226 ATTATCTCAGTGTCAGCCAACA 57.442 40.909 0.00 0.00 0.00 3.33
4801 5102 0.674895 GCTCGCAAGGACATGGACTT 60.675 55.000 0.00 0.00 38.47 3.01
4811 5112 3.395941 AGGACATGGACTTTGTTCCTCTT 59.604 43.478 0.00 0.00 36.51 2.85
4812 5113 3.753797 GGACATGGACTTTGTTCCTCTTC 59.246 47.826 0.00 0.00 36.51 2.87
4887 5767 7.694886 TGACTGACGTATACATGTAGAGAAAG 58.305 38.462 11.91 7.11 0.00 2.62
4890 5770 7.120873 ACTGACGTATACATGTAGAGAAAGTGT 59.879 37.037 11.91 1.53 0.00 3.55
4936 5817 8.278729 AGAGAAAATTAGCAGGAAAAGAGATG 57.721 34.615 0.00 0.00 0.00 2.90
4941 5822 0.729690 GCAGGAAAAGAGATGACGGC 59.270 55.000 0.00 0.00 0.00 5.68
4985 5866 1.600636 CTCCAAGCCCGTTTGCAGA 60.601 57.895 0.00 0.00 0.00 4.26
5005 5886 3.251004 AGATCCTCGAACAAGCACAAAAC 59.749 43.478 0.00 0.00 0.00 2.43
5036 5917 1.126329 ATGCCAGATGCCCTCTCGAT 61.126 55.000 0.00 0.00 40.16 3.59
5040 5921 1.480137 CCAGATGCCCTCTCGATATCC 59.520 57.143 0.00 0.00 29.16 2.59
5058 5939 4.576330 ATCCTTTCTAACCCCTTGTCTG 57.424 45.455 0.00 0.00 0.00 3.51
5062 5943 1.429930 TCTAACCCCTTGTCTGTGCA 58.570 50.000 0.00 0.00 0.00 4.57
5070 5951 2.016318 CCTTGTCTGTGCACAAAGTGA 58.984 47.619 21.98 11.75 35.83 3.41
5072 5953 1.667236 TGTCTGTGCACAAAGTGAGG 58.333 50.000 21.98 7.34 35.23 3.86
5074 5955 1.599542 GTCTGTGCACAAAGTGAGGTC 59.400 52.381 21.98 1.26 35.23 3.85
5076 5957 1.869767 CTGTGCACAAAGTGAGGTCTC 59.130 52.381 21.98 0.00 35.23 3.36
5077 5958 0.861837 GTGCACAAAGTGAGGTCTCG 59.138 55.000 13.17 0.00 35.23 4.04
5078 5959 0.750249 TGCACAAAGTGAGGTCTCGA 59.250 50.000 0.58 0.00 35.23 4.04
5079 5960 1.344438 TGCACAAAGTGAGGTCTCGAT 59.656 47.619 0.58 0.00 35.23 3.59
5080 5961 2.560981 TGCACAAAGTGAGGTCTCGATA 59.439 45.455 0.58 0.00 35.23 2.92
5081 5962 3.195610 TGCACAAAGTGAGGTCTCGATAT 59.804 43.478 0.58 0.00 35.23 1.63
5082 5963 3.799420 GCACAAAGTGAGGTCTCGATATC 59.201 47.826 0.58 0.00 35.23 1.63
5083 5964 4.363999 CACAAAGTGAGGTCTCGATATCC 58.636 47.826 0.00 0.00 35.23 2.59
5084 5965 4.098654 CACAAAGTGAGGTCTCGATATCCT 59.901 45.833 0.00 3.40 35.23 3.24
5085 5966 4.712337 ACAAAGTGAGGTCTCGATATCCTT 59.288 41.667 0.00 0.00 0.00 3.36
5086 5967 5.187967 ACAAAGTGAGGTCTCGATATCCTTT 59.812 40.000 0.00 0.00 0.00 3.11
5087 5968 5.523438 AAGTGAGGTCTCGATATCCTTTC 57.477 43.478 0.00 2.92 0.00 2.62
5088 5969 4.798882 AGTGAGGTCTCGATATCCTTTCT 58.201 43.478 0.00 4.61 0.00 2.52
5089 5970 5.942961 AGTGAGGTCTCGATATCCTTTCTA 58.057 41.667 0.00 0.00 0.00 2.10
5090 5971 6.366340 AGTGAGGTCTCGATATCCTTTCTAA 58.634 40.000 0.00 0.00 0.00 2.10
5091 5972 6.263617 AGTGAGGTCTCGATATCCTTTCTAAC 59.736 42.308 0.00 0.00 0.00 2.34
5092 5973 5.535406 TGAGGTCTCGATATCCTTTCTAACC 59.465 44.000 0.00 0.00 0.00 2.85
5093 5974 4.833938 AGGTCTCGATATCCTTTCTAACCC 59.166 45.833 0.00 0.00 0.00 4.11
5094 5975 4.021280 GGTCTCGATATCCTTTCTAACCCC 60.021 50.000 0.00 0.00 0.00 4.95
5095 5976 4.833938 GTCTCGATATCCTTTCTAACCCCT 59.166 45.833 0.00 0.00 0.00 4.79
5096 5977 5.304871 GTCTCGATATCCTTTCTAACCCCTT 59.695 44.000 0.00 0.00 0.00 3.95
5097 5978 5.304614 TCTCGATATCCTTTCTAACCCCTTG 59.695 44.000 0.00 0.00 0.00 3.61
5098 5979 4.966805 TCGATATCCTTTCTAACCCCTTGT 59.033 41.667 0.00 0.00 0.00 3.16
5099 5980 5.070047 TCGATATCCTTTCTAACCCCTTGTC 59.930 44.000 0.00 0.00 0.00 3.18
5100 5981 5.070580 CGATATCCTTTCTAACCCCTTGTCT 59.929 44.000 0.00 0.00 0.00 3.41
5101 5982 4.576330 ATCCTTTCTAACCCCTTGTCTG 57.424 45.455 0.00 0.00 0.00 3.51
5102 5983 3.323775 TCCTTTCTAACCCCTTGTCTGT 58.676 45.455 0.00 0.00 0.00 3.41
5103 5984 3.072476 TCCTTTCTAACCCCTTGTCTGTG 59.928 47.826 0.00 0.00 0.00 3.66
5104 5985 2.561478 TTCTAACCCCTTGTCTGTGC 57.439 50.000 0.00 0.00 0.00 4.57
5105 5986 1.429930 TCTAACCCCTTGTCTGTGCA 58.570 50.000 0.00 0.00 0.00 4.57
5106 5987 1.071699 TCTAACCCCTTGTCTGTGCAC 59.928 52.381 10.75 10.75 0.00 4.57
5107 5988 0.840617 TAACCCCTTGTCTGTGCACA 59.159 50.000 20.37 20.37 0.00 4.57
5108 5989 0.033601 AACCCCTTGTCTGTGCACAA 60.034 50.000 21.98 9.23 34.99 3.33
5109 5990 0.033601 ACCCCTTGTCTGTGCACAAA 60.034 50.000 21.98 11.56 35.83 2.83
5110 5991 0.670162 CCCCTTGTCTGTGCACAAAG 59.330 55.000 21.98 20.08 35.83 2.77
5111 5992 1.392589 CCCTTGTCTGTGCACAAAGT 58.607 50.000 21.98 0.00 35.83 2.66
5112 5993 1.066002 CCCTTGTCTGTGCACAAAGTG 59.934 52.381 21.98 9.29 35.83 3.16
5113 5994 2.016318 CCTTGTCTGTGCACAAAGTGA 58.984 47.619 21.98 11.75 35.83 3.41
5114 5995 2.032550 CCTTGTCTGTGCACAAAGTGAG 59.967 50.000 21.98 14.09 35.83 3.51
5115 5996 1.667236 TGTCTGTGCACAAAGTGAGG 58.333 50.000 21.98 7.34 35.23 3.86
5116 5997 0.947244 GTCTGTGCACAAAGTGAGGG 59.053 55.000 21.98 6.56 35.23 4.30
5117 5998 0.819259 TCTGTGCACAAAGTGAGGGC 60.819 55.000 21.98 0.00 35.23 5.19
5121 6002 1.032014 TGCACAAAGTGAGGGCTTTC 58.968 50.000 0.58 0.00 36.64 2.62
5137 6018 1.203994 CTTTCCTTTGCCATGGCTCAG 59.796 52.381 35.53 28.19 42.51 3.35
5139 6020 1.000521 CCTTTGCCATGGCTCAGGA 60.001 57.895 34.83 17.48 40.90 3.86
5150 6031 1.918262 TGGCTCAGGAATGGTCTTGAT 59.082 47.619 0.00 0.00 39.00 2.57
5153 6034 3.614092 GCTCAGGAATGGTCTTGATGAA 58.386 45.455 0.00 0.00 39.00 2.57
5165 6046 2.041485 TCTTGATGAAGGTTGCCCATGA 59.959 45.455 0.00 0.00 0.00 3.07
5216 6097 4.165950 AGCCCATGTTATAGTCATGACCAA 59.834 41.667 22.21 11.43 43.47 3.67
5218 6099 5.536161 GCCCATGTTATAGTCATGACCAATT 59.464 40.000 22.21 6.40 43.47 2.32
5219 6100 6.515531 GCCCATGTTATAGTCATGACCAATTG 60.516 42.308 22.21 13.86 43.47 2.32
5221 6102 7.255242 CCCATGTTATAGTCATGACCAATTGAC 60.255 40.741 22.21 16.23 43.47 3.18
5222 6103 7.255242 CCATGTTATAGTCATGACCAATTGACC 60.255 40.741 22.21 4.13 43.47 4.02
5223 6104 6.716284 TGTTATAGTCATGACCAATTGACCA 58.284 36.000 22.21 4.60 42.56 4.02
5224 6105 7.345691 TGTTATAGTCATGACCAATTGACCAT 58.654 34.615 22.21 6.85 42.56 3.55
5225 6106 7.833682 TGTTATAGTCATGACCAATTGACCATT 59.166 33.333 22.21 1.73 42.56 3.16
5226 6107 6.949352 ATAGTCATGACCAATTGACCATTC 57.051 37.500 22.21 5.69 42.56 2.67
5227 6108 4.665451 AGTCATGACCAATTGACCATTCA 58.335 39.130 22.21 1.91 42.56 2.57
5228 6109 5.266788 AGTCATGACCAATTGACCATTCAT 58.733 37.500 22.21 4.15 42.56 2.57
5250 6131 2.432510 GGTATAGTTGCACAGAGGAGCT 59.567 50.000 0.00 0.00 32.93 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 71 1.722034 GATGAGGCCTATGTGGAGGA 58.278 55.000 4.42 0.00 39.15 3.71
142 148 2.125912 CAGACGGAGGCGGAGTTG 60.126 66.667 0.00 0.00 0.00 3.16
156 162 0.603707 CGCCTTCAACTTGGAGCAGA 60.604 55.000 0.00 0.00 0.00 4.26
180 201 1.986757 GAGGAGCCAGACCAGCAGA 60.987 63.158 0.00 0.00 0.00 4.26
321 363 2.765807 AGCAGGAGATCCGGGTGG 60.766 66.667 0.00 0.00 40.30 4.61
431 476 1.080093 CGGCACTCTTTCCGCTGTA 60.080 57.895 0.00 0.00 39.14 2.74
434 479 3.302347 CTCCGGCACTCTTTCCGCT 62.302 63.158 0.00 0.00 44.01 5.52
436 481 2.815647 GCTCCGGCACTCTTTCCG 60.816 66.667 0.00 0.00 44.89 4.30
471 516 3.536917 CGCCAGTCCGAGCCCATA 61.537 66.667 0.00 0.00 0.00 2.74
525 583 0.387622 TTTAAGTCGGTCGGCGTCTG 60.388 55.000 6.85 6.73 0.00 3.51
526 584 0.529378 ATTTAAGTCGGTCGGCGTCT 59.471 50.000 6.85 0.00 0.00 4.18
608 685 2.355126 CGATCCGATGGACGCCAG 60.355 66.667 4.90 0.00 36.75 4.85
609 686 4.585526 GCGATCCGATGGACGCCA 62.586 66.667 16.56 1.01 42.09 5.69
692 769 3.175710 ATATGGGGGTGCCCGGAC 61.176 66.667 0.73 0.00 46.66 4.79
693 770 2.852075 GATATGGGGGTGCCCGGA 60.852 66.667 0.73 0.00 46.66 5.14
694 771 3.966543 GGATATGGGGGTGCCCGG 61.967 72.222 0.00 0.00 46.66 5.73
700 777 2.424989 TATGGGGCGGATATGGGGGT 62.425 60.000 0.00 0.00 0.00 4.95
732 823 3.236003 GACTGACCGACACCCCCAC 62.236 68.421 0.00 0.00 0.00 4.61
753 845 2.554032 CCTCAAATGGTCTTCAAACGCT 59.446 45.455 0.00 0.00 0.00 5.07
764 856 1.352352 CAGACAGACCCCTCAAATGGT 59.648 52.381 0.00 0.00 37.64 3.55
797 889 6.199393 TCTCAAACTCGACATATACGTCATG 58.801 40.000 0.00 0.00 35.54 3.07
798 890 6.373186 TCTCAAACTCGACATATACGTCAT 57.627 37.500 0.00 0.00 35.54 3.06
799 891 5.220796 CCTCTCAAACTCGACATATACGTCA 60.221 44.000 0.00 0.00 35.54 4.35
800 892 5.206299 CCTCTCAAACTCGACATATACGTC 58.794 45.833 0.00 0.00 0.00 4.34
801 893 4.639310 ACCTCTCAAACTCGACATATACGT 59.361 41.667 0.00 0.00 0.00 3.57
802 894 5.171147 ACCTCTCAAACTCGACATATACG 57.829 43.478 0.00 0.00 0.00 3.06
803 895 5.067413 TGGACCTCTCAAACTCGACATATAC 59.933 44.000 0.00 0.00 0.00 1.47
804 896 5.198207 TGGACCTCTCAAACTCGACATATA 58.802 41.667 0.00 0.00 0.00 0.86
805 897 4.023980 TGGACCTCTCAAACTCGACATAT 58.976 43.478 0.00 0.00 0.00 1.78
806 898 3.427573 TGGACCTCTCAAACTCGACATA 58.572 45.455 0.00 0.00 0.00 2.29
807 899 2.232452 CTGGACCTCTCAAACTCGACAT 59.768 50.000 0.00 0.00 0.00 3.06
808 900 1.613925 CTGGACCTCTCAAACTCGACA 59.386 52.381 0.00 0.00 0.00 4.35
809 901 1.670380 GCTGGACCTCTCAAACTCGAC 60.670 57.143 0.00 0.00 0.00 4.20
810 902 0.603569 GCTGGACCTCTCAAACTCGA 59.396 55.000 0.00 0.00 0.00 4.04
811 903 0.605589 AGCTGGACCTCTCAAACTCG 59.394 55.000 0.00 0.00 0.00 4.18
812 904 5.799827 ATATAGCTGGACCTCTCAAACTC 57.200 43.478 0.00 0.00 0.00 3.01
813 905 6.615617 TCTATATAGCTGGACCTCTCAAACT 58.384 40.000 4.75 0.00 0.00 2.66
814 906 6.902771 TCTATATAGCTGGACCTCTCAAAC 57.097 41.667 4.75 0.00 0.00 2.93
815 907 6.438741 CCATCTATATAGCTGGACCTCTCAAA 59.561 42.308 22.93 0.00 41.03 2.69
816 908 5.954752 CCATCTATATAGCTGGACCTCTCAA 59.045 44.000 22.93 0.00 41.03 3.02
817 909 5.015710 ACCATCTATATAGCTGGACCTCTCA 59.984 44.000 30.52 1.44 41.03 3.27
818 910 5.515106 ACCATCTATATAGCTGGACCTCTC 58.485 45.833 30.52 0.00 41.03 3.20
819 911 5.255207 AGACCATCTATATAGCTGGACCTCT 59.745 44.000 30.52 21.88 41.03 3.69
820 912 5.515106 AGACCATCTATATAGCTGGACCTC 58.485 45.833 30.52 20.44 41.03 3.85
821 913 5.544441 AGACCATCTATATAGCTGGACCT 57.456 43.478 30.52 23.57 41.03 3.85
822 914 7.616150 TCTTAAGACCATCTATATAGCTGGACC 59.384 40.741 30.52 22.23 41.03 4.46
823 915 8.582657 TCTTAAGACCATCTATATAGCTGGAC 57.417 38.462 30.52 25.41 41.03 4.02
824 916 9.775539 AATCTTAAGACCATCTATATAGCTGGA 57.224 33.333 30.52 12.98 41.03 3.86
838 930 8.730680 GCAAACAGAATTCTAATCTTAAGACCA 58.269 33.333 7.48 0.00 0.00 4.02
839 931 8.951243 AGCAAACAGAATTCTAATCTTAAGACC 58.049 33.333 7.48 0.00 0.00 3.85
845 937 9.289782 ACACTAAGCAAACAGAATTCTAATCTT 57.710 29.630 7.86 9.56 0.00 2.40
846 938 8.854614 ACACTAAGCAAACAGAATTCTAATCT 57.145 30.769 7.86 0.00 0.00 2.40
847 939 8.721478 TGACACTAAGCAAACAGAATTCTAATC 58.279 33.333 7.86 0.00 0.00 1.75
848 940 8.507249 GTGACACTAAGCAAACAGAATTCTAAT 58.493 33.333 7.86 0.00 0.00 1.73
849 941 7.715249 AGTGACACTAAGCAAACAGAATTCTAA 59.285 33.333 7.86 0.00 0.00 2.10
850 942 7.217200 AGTGACACTAAGCAAACAGAATTCTA 58.783 34.615 7.86 0.00 0.00 2.10
851 943 6.058183 AGTGACACTAAGCAAACAGAATTCT 58.942 36.000 6.24 0.88 0.00 2.40
852 944 6.017934 TGAGTGACACTAAGCAAACAGAATTC 60.018 38.462 8.41 0.00 0.00 2.17
853 945 5.822519 TGAGTGACACTAAGCAAACAGAATT 59.177 36.000 8.41 0.00 0.00 2.17
854 946 5.368145 TGAGTGACACTAAGCAAACAGAAT 58.632 37.500 8.41 0.00 0.00 2.40
855 947 4.765273 TGAGTGACACTAAGCAAACAGAA 58.235 39.130 8.41 0.00 0.00 3.02
856 948 4.141937 ACTGAGTGACACTAAGCAAACAGA 60.142 41.667 18.60 0.00 29.22 3.41
857 949 4.025396 CACTGAGTGACACTAAGCAAACAG 60.025 45.833 18.60 15.86 35.23 3.16
858 950 3.871006 CACTGAGTGACACTAAGCAAACA 59.129 43.478 18.60 5.44 35.23 2.83
859 951 3.871594 ACACTGAGTGACACTAAGCAAAC 59.128 43.478 20.97 0.88 36.96 2.93
860 952 4.137116 ACACTGAGTGACACTAAGCAAA 57.863 40.909 20.97 0.00 36.96 3.68
861 953 3.819564 ACACTGAGTGACACTAAGCAA 57.180 42.857 20.97 0.00 36.96 3.91
862 954 3.305403 GCTACACTGAGTGACACTAAGCA 60.305 47.826 20.97 7.49 36.96 3.91
863 955 3.246619 GCTACACTGAGTGACACTAAGC 58.753 50.000 20.97 12.93 36.96 3.09
864 956 4.505313 TGCTACACTGAGTGACACTAAG 57.495 45.455 20.97 17.29 36.96 2.18
865 957 4.082190 GGATGCTACACTGAGTGACACTAA 60.082 45.833 20.97 0.00 36.96 2.24
866 958 3.444034 GGATGCTACACTGAGTGACACTA 59.556 47.826 20.97 0.00 36.96 2.74
867 959 2.232452 GGATGCTACACTGAGTGACACT 59.768 50.000 20.97 8.12 36.96 3.55
868 960 2.611518 GGATGCTACACTGAGTGACAC 58.388 52.381 20.97 7.99 36.96 3.67
869 961 1.550524 GGGATGCTACACTGAGTGACA 59.449 52.381 20.97 14.11 36.96 3.58
870 962 1.550524 TGGGATGCTACACTGAGTGAC 59.449 52.381 20.97 8.71 36.96 3.67
871 963 1.550524 GTGGGATGCTACACTGAGTGA 59.449 52.381 20.97 2.05 36.96 3.41
872 964 1.406069 GGTGGGATGCTACACTGAGTG 60.406 57.143 11.70 11.70 39.75 3.51
873 965 0.905357 GGTGGGATGCTACACTGAGT 59.095 55.000 2.62 0.00 37.72 3.41
874 966 0.179100 CGGTGGGATGCTACACTGAG 60.179 60.000 2.62 0.00 44.70 3.35
875 967 1.897423 CGGTGGGATGCTACACTGA 59.103 57.895 2.62 0.00 44.70 3.41
876 968 1.815421 GCGGTGGGATGCTACACTG 60.815 63.158 2.62 0.67 44.71 3.66
877 969 1.836999 TTGCGGTGGGATGCTACACT 61.837 55.000 2.62 0.00 37.72 3.55
878 970 1.369091 CTTGCGGTGGGATGCTACAC 61.369 60.000 2.62 0.00 36.89 2.90
879 971 1.078497 CTTGCGGTGGGATGCTACA 60.078 57.895 2.62 0.00 0.00 2.74
892 984 1.860078 GTTGGGTTCGAGACTTGCG 59.140 57.895 0.00 0.00 0.00 4.85
893 985 0.599204 TCGTTGGGTTCGAGACTTGC 60.599 55.000 0.00 0.00 33.38 4.01
894 986 3.580904 TCGTTGGGTTCGAGACTTG 57.419 52.632 0.00 0.00 33.38 3.16
911 1003 1.268899 TCCGAAACGTGGACTCTTCTC 59.731 52.381 0.00 0.00 0.00 2.87
913 1005 1.993370 CATCCGAAACGTGGACTCTTC 59.007 52.381 0.00 0.00 38.60 2.87
914 1006 1.616865 TCATCCGAAACGTGGACTCTT 59.383 47.619 0.00 0.00 38.60 2.85
956 1051 2.809174 GGCGGCGATTTGTTTGGC 60.809 61.111 12.98 0.00 0.00 4.52
957 1052 2.503809 CGGCGGCGATTTGTTTGG 60.504 61.111 29.19 0.00 0.00 3.28
1125 1224 0.456221 AGGACGACGACATGGACATC 59.544 55.000 0.00 0.00 0.00 3.06
1127 1226 1.880894 GAGGACGACGACATGGACA 59.119 57.895 0.00 0.00 0.00 4.02
1129 1228 3.047718 GCGAGGACGACGACATGGA 62.048 63.158 0.00 0.00 42.66 3.41
1269 1380 2.740714 GGCGAAGACGGTGATGTGC 61.741 63.158 0.00 0.00 40.15 4.57
1271 1382 2.264794 GGGCGAAGACGGTGATGT 59.735 61.111 0.00 0.00 33.41 3.06
1296 1407 3.066190 CGGGGAGTACCTGCGACA 61.066 66.667 0.00 0.00 39.19 4.35
1363 1485 0.538287 GTGCAGGGCCATCTTATCCC 60.538 60.000 6.18 0.00 40.36 3.85
1419 1541 1.253034 GAGATAAAACGAGCACGCGAG 59.747 52.381 15.93 5.97 43.96 5.03
1451 1573 3.582647 TGGTTGCCTCAGAACAGAGATTA 59.417 43.478 0.00 0.00 37.87 1.75
1611 1770 1.886886 TCAGTAAACCAAGCGGGAAC 58.113 50.000 4.35 0.48 41.15 3.62
1616 1775 2.348666 CGAGGATTCAGTAAACCAAGCG 59.651 50.000 0.00 0.00 0.00 4.68
1646 1814 1.877576 CTCTGCAGCTACACCCGACA 61.878 60.000 9.47 0.00 0.00 4.35
1648 1816 1.304134 TCTCTGCAGCTACACCCGA 60.304 57.895 9.47 0.00 0.00 5.14
1674 1847 1.298413 CATACACTCGGCGTCTCGG 60.298 63.158 6.85 0.00 0.00 4.63
1675 1848 1.298413 CCATACACTCGGCGTCTCG 60.298 63.158 6.85 0.00 0.00 4.04
1676 1849 0.669077 ATCCATACACTCGGCGTCTC 59.331 55.000 6.85 0.00 0.00 3.36
1677 1850 1.607628 GTATCCATACACTCGGCGTCT 59.392 52.381 6.85 0.00 33.52 4.18
1678 1851 1.335810 TGTATCCATACACTCGGCGTC 59.664 52.381 6.85 0.00 38.28 5.19
1679 1852 1.395635 TGTATCCATACACTCGGCGT 58.604 50.000 6.85 0.00 38.28 5.68
1680 1853 2.502213 TTGTATCCATACACTCGGCG 57.498 50.000 0.00 0.00 42.48 6.46
1828 2008 2.865119 AACAGTCATGTGGATGCAGA 57.135 45.000 0.00 0.00 40.39 4.26
1882 2063 2.683362 GGTACACCAGATAAGGCAAAGC 59.317 50.000 0.00 0.00 35.64 3.51
1935 2116 3.691342 CCACTCGCTTCCGTGGGA 61.691 66.667 0.00 0.00 45.39 4.37
1959 2140 3.378427 GGTATTCTTCGCATGCCTTCTTT 59.622 43.478 13.15 0.00 0.00 2.52
2027 2208 3.808174 GCAAAAACCGAAGAGTACAGAGT 59.192 43.478 0.00 0.00 0.00 3.24
2041 2222 1.416030 ACCAAGATGGGTGCAAAAACC 59.584 47.619 0.87 0.00 43.37 3.27
2060 2241 3.051081 AGAATGTCAGCACAGGAAGAC 57.949 47.619 0.00 0.00 35.41 3.01
2065 2246 4.520492 AGGTAAAAAGAATGTCAGCACAGG 59.480 41.667 0.00 0.00 35.41 4.00
2068 2249 6.503524 TGAAAGGTAAAAAGAATGTCAGCAC 58.496 36.000 0.00 0.00 0.00 4.40
2087 2268 2.393271 ATCCTGTTCCTCGCTGAAAG 57.607 50.000 0.00 0.00 0.00 2.62
2194 2375 7.736447 ATAAACTCTGCATCCTTAACTATGC 57.264 36.000 9.40 9.40 46.92 3.14
2207 2388 1.337354 TGCCGACGAATAAACTCTGCA 60.337 47.619 0.00 0.00 0.00 4.41
2229 2410 1.654023 GGCTTGGCATCCGGTACAAC 61.654 60.000 0.00 0.00 0.00 3.32
2271 2452 6.818142 TCAAGGTCACATGATGTTACATACTG 59.182 38.462 11.52 1.58 0.00 2.74
2282 2463 3.361281 AGTGCATCAAGGTCACATGAT 57.639 42.857 0.00 0.00 36.74 2.45
2309 2490 9.781834 TTAACGACAATAAATAAGAATGCAAGG 57.218 29.630 0.00 0.00 0.00 3.61
2356 2538 5.189145 TCTGTAAAGGAGGAAATGGTAGACC 59.811 44.000 0.00 0.00 0.00 3.85
2478 2660 1.462616 ACACAGTTTCTGCAGTGCAA 58.537 45.000 20.22 7.56 38.41 4.08
2559 2741 4.929808 ACTTCATGAACGACTTGTACATCC 59.070 41.667 3.38 0.00 0.00 3.51
2595 2777 2.834549 TCCTCCACCTTCAGATTCACTC 59.165 50.000 0.00 0.00 0.00 3.51
2631 2813 7.167302 CACATGTGAGAGAAAACGCAAAAATAA 59.833 33.333 21.64 0.00 0.00 1.40
2642 2824 8.469200 AGTTTCAAATTCACATGTGAGAGAAAA 58.531 29.630 28.52 22.48 41.13 2.29
2770 2952 3.415212 TGCAGTCTTTCAAATCCTCCAG 58.585 45.455 0.00 0.00 0.00 3.86
2912 3098 0.941542 TCTTTTTCGCACCAGGAACG 59.058 50.000 0.00 0.00 0.00 3.95
3106 3292 9.841295 AAAGTATCAAAAGTTACCTCACAGTAA 57.159 29.630 0.00 0.00 0.00 2.24
3171 3359 7.861629 TGGATCCATGAATTACAGTAGACTTT 58.138 34.615 11.44 0.00 0.00 2.66
3179 3367 4.712051 TCCCTGGATCCATGAATTACAG 57.288 45.455 16.63 0.00 0.00 2.74
3230 3418 7.495279 TCAAACAAACTTCCATTTTCATTGAGG 59.505 33.333 0.00 0.00 0.00 3.86
3231 3419 8.422973 TCAAACAAACTTCCATTTTCATTGAG 57.577 30.769 0.00 0.00 0.00 3.02
3318 3506 5.659440 AACAAATGACGCTTCCCATAAAT 57.341 34.783 0.00 0.00 0.00 1.40
3360 3549 2.610833 CAGCGCATGATAGAGCTCAAAA 59.389 45.455 17.77 0.65 42.90 2.44
3405 3594 4.357918 ACTACAAACTTGCCAGACAGAT 57.642 40.909 0.00 0.00 0.00 2.90
3444 3633 2.233271 CGCTTTGCCCCATCTCATTAT 58.767 47.619 0.00 0.00 0.00 1.28
3464 3653 7.757526 ACCATTTTCTTTAAACAAAGGCAAAC 58.242 30.769 0.00 0.00 0.00 2.93
3501 3691 5.705905 AGCTTTTCACTTCATGGGTTACTAC 59.294 40.000 0.00 0.00 0.00 2.73
3608 3798 6.294361 TGGTAAGATCTTAGCAAGTAGCAA 57.706 37.500 34.11 15.98 46.52 3.91
3609 3799 5.932619 TGGTAAGATCTTAGCAAGTAGCA 57.067 39.130 34.11 18.87 46.52 3.49
3651 3850 3.633986 CCATCCCTTCATAAAAGGAGCAC 59.366 47.826 5.39 0.00 39.81 4.40
3663 3862 1.494721 GCCCTGAATACCATCCCTTCA 59.505 52.381 0.00 0.00 0.00 3.02
3712 3916 0.104934 AAGGGGTGGTGTCTGACTCT 60.105 55.000 9.51 0.00 0.00 3.24
3718 3922 1.697982 GTACTGAAAGGGGTGGTGTCT 59.302 52.381 0.00 0.00 39.30 3.41
3755 3993 0.037326 GTTCGTCCTGACATGGCTCA 60.037 55.000 0.00 0.00 0.00 4.26
3756 3994 0.247736 AGTTCGTCCTGACATGGCTC 59.752 55.000 0.00 0.00 0.00 4.70
3757 3995 0.687354 AAGTTCGTCCTGACATGGCT 59.313 50.000 0.00 0.00 0.00 4.75
3758 3996 0.798776 CAAGTTCGTCCTGACATGGC 59.201 55.000 0.00 0.00 0.00 4.40
3759 3997 1.800586 CACAAGTTCGTCCTGACATGG 59.199 52.381 0.00 0.00 0.00 3.66
3760 3998 1.195448 GCACAAGTTCGTCCTGACATG 59.805 52.381 0.00 0.00 0.00 3.21
3761 3999 1.202639 TGCACAAGTTCGTCCTGACAT 60.203 47.619 0.00 0.00 0.00 3.06
3762 4000 0.176910 TGCACAAGTTCGTCCTGACA 59.823 50.000 0.00 0.00 0.00 3.58
3763 4001 1.295792 TTGCACAAGTTCGTCCTGAC 58.704 50.000 0.00 0.00 0.00 3.51
3764 4002 1.872952 CATTGCACAAGTTCGTCCTGA 59.127 47.619 0.00 0.00 0.00 3.86
3765 4003 1.872952 TCATTGCACAAGTTCGTCCTG 59.127 47.619 0.00 0.00 0.00 3.86
3766 4004 2.254546 TCATTGCACAAGTTCGTCCT 57.745 45.000 0.00 0.00 0.00 3.85
3767 4005 3.932710 TCTATCATTGCACAAGTTCGTCC 59.067 43.478 0.00 0.00 0.00 4.79
3768 4006 5.348724 TCTTCTATCATTGCACAAGTTCGTC 59.651 40.000 0.00 0.00 0.00 4.20
3769 4007 5.237815 TCTTCTATCATTGCACAAGTTCGT 58.762 37.500 0.00 0.00 0.00 3.85
3770 4008 5.220548 CCTCTTCTATCATTGCACAAGTTCG 60.221 44.000 0.00 0.00 0.00 3.95
3771 4009 5.877012 TCCTCTTCTATCATTGCACAAGTTC 59.123 40.000 0.00 0.00 0.00 3.01
3772 4010 5.645497 GTCCTCTTCTATCATTGCACAAGTT 59.355 40.000 0.00 0.00 0.00 2.66
3773 4011 5.181748 GTCCTCTTCTATCATTGCACAAGT 58.818 41.667 0.00 0.00 0.00 3.16
3774 4012 5.064452 GTGTCCTCTTCTATCATTGCACAAG 59.936 44.000 0.00 0.00 0.00 3.16
3775 4013 4.937620 GTGTCCTCTTCTATCATTGCACAA 59.062 41.667 0.00 0.00 0.00 3.33
3776 4014 4.223700 AGTGTCCTCTTCTATCATTGCACA 59.776 41.667 0.00 0.00 0.00 4.57
3777 4015 4.569966 CAGTGTCCTCTTCTATCATTGCAC 59.430 45.833 0.00 0.00 0.00 4.57
3778 4016 4.763073 CAGTGTCCTCTTCTATCATTGCA 58.237 43.478 0.00 0.00 0.00 4.08
3779 4017 3.559242 GCAGTGTCCTCTTCTATCATTGC 59.441 47.826 0.00 0.00 35.44 3.56
3780 4018 5.021033 AGCAGTGTCCTCTTCTATCATTG 57.979 43.478 0.00 0.00 0.00 2.82
3781 4019 5.690464 AAGCAGTGTCCTCTTCTATCATT 57.310 39.130 0.00 0.00 0.00 2.57
3782 4020 5.221422 GCTAAGCAGTGTCCTCTTCTATCAT 60.221 44.000 0.00 0.00 0.00 2.45
3783 4021 4.098654 GCTAAGCAGTGTCCTCTTCTATCA 59.901 45.833 0.00 0.00 0.00 2.15
3784 4022 4.098654 TGCTAAGCAGTGTCCTCTTCTATC 59.901 45.833 0.00 0.00 33.32 2.08
3785 4023 4.026744 TGCTAAGCAGTGTCCTCTTCTAT 58.973 43.478 0.00 0.00 33.32 1.98
3786 4024 3.431415 TGCTAAGCAGTGTCCTCTTCTA 58.569 45.455 0.00 0.00 33.32 2.10
3787 4025 2.251818 TGCTAAGCAGTGTCCTCTTCT 58.748 47.619 0.00 0.00 33.32 2.85
3788 4026 2.751166 TGCTAAGCAGTGTCCTCTTC 57.249 50.000 0.00 0.00 33.32 2.87
3833 4071 6.778834 ATCCATGACAAATCATAAGCAACA 57.221 33.333 0.00 0.00 44.13 3.33
3834 4072 6.698766 GGAATCCATGACAAATCATAAGCAAC 59.301 38.462 0.00 0.00 44.13 4.17
3854 4092 6.981722 AGGAAACAAACACATGTTAGGAATC 58.018 36.000 0.00 0.00 42.49 2.52
3959 4197 4.143740 AGGCCAGTCCTCCTTCTG 57.856 61.111 5.01 0.00 43.20 3.02
3979 4217 6.538381 TGTTCAACACGCTGATATCATACAAT 59.462 34.615 5.72 0.00 0.00 2.71
4039 4277 0.250640 GCATACCATGGAGGAGGCTG 60.251 60.000 21.47 5.73 41.22 4.85
4098 4336 1.750018 CGGGACCTGCATGCAATCA 60.750 57.895 22.88 0.00 0.00 2.57
4149 4387 1.960417 TGGCGATGTTGAAGTTGACA 58.040 45.000 0.00 0.00 0.00 3.58
4403 4641 2.240667 GCCCCAGGATATATGTGCAGAT 59.759 50.000 0.53 0.53 0.00 2.90
4504 4742 6.582677 TCCTCTTTGTCTGAACTTCTAGAG 57.417 41.667 0.00 0.00 0.00 2.43
4507 4745 6.978674 TCTTCCTCTTTGTCTGAACTTCTA 57.021 37.500 0.00 0.00 0.00 2.10
4512 4763 6.927294 TCTTTTCTTCCTCTTTGTCTGAAC 57.073 37.500 0.00 0.00 0.00 3.18
4532 4783 6.014242 CCCTTTCTTGGGCTTCTAATTTTCTT 60.014 38.462 0.00 0.00 40.84 2.52
4534 4785 5.724328 CCCTTTCTTGGGCTTCTAATTTTC 58.276 41.667 0.00 0.00 40.84 2.29
4570 4822 1.901833 GTTGAACAATCCAGCCCCATT 59.098 47.619 0.00 0.00 0.00 3.16
4575 4827 1.154225 CGCGTTGAACAATCCAGCC 60.154 57.895 0.00 0.00 0.00 4.85
4633 4922 4.454847 ACAGTTCGTCTTCAGATCTTACGA 59.545 41.667 12.74 12.74 40.48 3.43
4634 4923 4.724303 ACAGTTCGTCTTCAGATCTTACG 58.276 43.478 0.00 1.33 34.99 3.18
4635 4924 7.968956 TGATAACAGTTCGTCTTCAGATCTTAC 59.031 37.037 0.00 0.00 0.00 2.34
4636 4925 7.968956 GTGATAACAGTTCGTCTTCAGATCTTA 59.031 37.037 0.00 0.00 0.00 2.10
4664 4958 6.888632 AGATGATCCTTTGCAATTTACTCTGT 59.111 34.615 0.00 0.00 0.00 3.41
4667 4961 7.093322 ACAGATGATCCTTTGCAATTTACTC 57.907 36.000 0.00 0.00 0.00 2.59
4677 4971 5.879223 AGCAGAACTTACAGATGATCCTTTG 59.121 40.000 0.00 0.00 0.00 2.77
4678 4972 6.059787 AGCAGAACTTACAGATGATCCTTT 57.940 37.500 0.00 0.00 0.00 3.11
4692 4993 7.944729 AATATGTAATGTGGAAGCAGAACTT 57.055 32.000 0.00 0.00 42.98 2.66
4719 5020 9.565213 GAACTGTAGTATACTTAAGCTTCGAAA 57.435 33.333 11.40 0.00 43.54 3.46
4745 5046 4.264253 TGGCTGACACTGAGATAATTTGG 58.736 43.478 0.00 0.00 0.00 3.28
4750 5051 3.866066 GCTGTTGGCTGACACTGAGATAA 60.866 47.826 0.00 0.00 38.06 1.75
4786 5087 2.029918 GGAACAAAGTCCATGTCCTTGC 60.030 50.000 0.00 0.00 37.65 4.01
4811 5112 2.438614 CCTCGGCTCTGACCTCGA 60.439 66.667 0.00 0.00 0.00 4.04
4812 5113 3.522731 CCCTCGGCTCTGACCTCG 61.523 72.222 0.00 0.00 0.00 4.63
4890 5770 8.441312 TCTCTACATGTGTGTATACGTCAATA 57.559 34.615 9.11 0.00 39.93 1.90
4936 5817 2.022195 TCTCTACATACTGTGGCCGTC 58.978 52.381 0.00 0.00 0.00 4.79
4941 5822 6.536582 CACTCCATTTTCTCTACATACTGTGG 59.463 42.308 0.00 0.00 0.00 4.17
4985 5866 2.032030 CGTTTTGTGCTTGTTCGAGGAT 60.032 45.455 0.00 0.00 0.00 3.24
5023 5904 3.513515 AGAAAGGATATCGAGAGGGCATC 59.486 47.826 0.00 0.00 0.00 3.91
5036 5917 5.045869 CACAGACAAGGGGTTAGAAAGGATA 60.046 44.000 0.00 0.00 0.00 2.59
5040 5921 2.814336 GCACAGACAAGGGGTTAGAAAG 59.186 50.000 0.00 0.00 0.00 2.62
5058 5939 0.861837 CGAGACCTCACTTTGTGCAC 59.138 55.000 10.75 10.75 32.98 4.57
5062 5943 4.282496 AGGATATCGAGACCTCACTTTGT 58.718 43.478 0.00 0.00 0.00 2.83
5070 5951 4.833938 GGGTTAGAAAGGATATCGAGACCT 59.166 45.833 0.00 0.00 35.36 3.85
5072 5953 4.833938 AGGGGTTAGAAAGGATATCGAGAC 59.166 45.833 0.00 0.00 0.00 3.36
5074 5955 5.070580 ACAAGGGGTTAGAAAGGATATCGAG 59.929 44.000 0.00 0.00 0.00 4.04
5076 5957 5.070580 AGACAAGGGGTTAGAAAGGATATCG 59.929 44.000 0.00 0.00 0.00 2.92
5077 5958 6.126739 ACAGACAAGGGGTTAGAAAGGATATC 60.127 42.308 0.00 0.00 0.00 1.63
5078 5959 5.731678 ACAGACAAGGGGTTAGAAAGGATAT 59.268 40.000 0.00 0.00 0.00 1.63
5079 5960 5.045869 CACAGACAAGGGGTTAGAAAGGATA 60.046 44.000 0.00 0.00 0.00 2.59
5080 5961 3.916989 ACAGACAAGGGGTTAGAAAGGAT 59.083 43.478 0.00 0.00 0.00 3.24
5081 5962 3.072476 CACAGACAAGGGGTTAGAAAGGA 59.928 47.826 0.00 0.00 0.00 3.36
5082 5963 3.412386 CACAGACAAGGGGTTAGAAAGG 58.588 50.000 0.00 0.00 0.00 3.11
5083 5964 2.814336 GCACAGACAAGGGGTTAGAAAG 59.186 50.000 0.00 0.00 0.00 2.62
5084 5965 2.173782 TGCACAGACAAGGGGTTAGAAA 59.826 45.455 0.00 0.00 0.00 2.52
5085 5966 1.771854 TGCACAGACAAGGGGTTAGAA 59.228 47.619 0.00 0.00 0.00 2.10
5086 5967 1.071699 GTGCACAGACAAGGGGTTAGA 59.928 52.381 13.17 0.00 0.00 2.10
5087 5968 1.202758 TGTGCACAGACAAGGGGTTAG 60.203 52.381 17.42 0.00 0.00 2.34
5088 5969 0.840617 TGTGCACAGACAAGGGGTTA 59.159 50.000 17.42 0.00 0.00 2.85
5089 5970 0.033601 TTGTGCACAGACAAGGGGTT 60.034 50.000 20.59 0.00 32.05 4.11
5090 5971 0.033601 TTTGTGCACAGACAAGGGGT 60.034 50.000 20.59 0.00 37.16 4.95
5091 5972 0.670162 CTTTGTGCACAGACAAGGGG 59.330 55.000 20.59 0.00 37.16 4.79
5092 5973 1.066002 CACTTTGTGCACAGACAAGGG 59.934 52.381 25.78 21.15 37.27 3.95
5093 5974 2.016318 TCACTTTGTGCACAGACAAGG 58.984 47.619 25.78 17.50 37.16 3.61
5094 5975 2.032550 CCTCACTTTGTGCACAGACAAG 59.967 50.000 22.37 22.37 37.16 3.16
5095 5976 2.016318 CCTCACTTTGTGCACAGACAA 58.984 47.619 20.59 10.90 33.96 3.18
5096 5977 1.667236 CCTCACTTTGTGCACAGACA 58.333 50.000 20.59 1.98 32.98 3.41
5097 5978 0.947244 CCCTCACTTTGTGCACAGAC 59.053 55.000 20.59 0.00 32.98 3.51
5098 5979 0.819259 GCCCTCACTTTGTGCACAGA 60.819 55.000 20.59 15.19 32.98 3.41
5099 5980 0.820891 AGCCCTCACTTTGTGCACAG 60.821 55.000 20.59 12.15 32.98 3.66
5100 5981 0.395586 AAGCCCTCACTTTGTGCACA 60.396 50.000 17.42 17.42 32.98 4.57
5101 5982 0.746659 AAAGCCCTCACTTTGTGCAC 59.253 50.000 10.75 10.75 38.43 4.57
5102 5983 1.032014 GAAAGCCCTCACTTTGTGCA 58.968 50.000 0.00 0.00 39.93 4.57
5103 5984 0.315251 GGAAAGCCCTCACTTTGTGC 59.685 55.000 0.00 0.00 39.93 4.57
5104 5985 1.986882 AGGAAAGCCCTCACTTTGTG 58.013 50.000 0.00 0.00 43.31 3.33
5116 5997 0.108472 GAGCCATGGCAAAGGAAAGC 60.108 55.000 37.18 11.40 44.88 3.51
5117 5998 1.203994 CTGAGCCATGGCAAAGGAAAG 59.796 52.381 37.18 18.61 44.88 2.62
5121 6002 0.612732 TTCCTGAGCCATGGCAAAGG 60.613 55.000 35.58 35.58 44.88 3.11
5124 6005 0.685131 CCATTCCTGAGCCATGGCAA 60.685 55.000 37.18 22.86 44.88 4.52
5126 6007 1.076485 ACCATTCCTGAGCCATGGC 60.076 57.895 30.12 30.12 41.21 4.40
5137 6018 3.119352 GCAACCTTCATCAAGACCATTCC 60.119 47.826 0.00 0.00 0.00 3.01
5139 6020 2.827921 GGCAACCTTCATCAAGACCATT 59.172 45.455 0.00 0.00 0.00 3.16
5221 6102 5.125356 TCTGTGCAACTATACCATGAATGG 58.875 41.667 7.82 7.82 46.22 3.16
5222 6103 5.237996 CCTCTGTGCAACTATACCATGAATG 59.762 44.000 0.00 0.00 38.04 2.67
5223 6104 5.130975 TCCTCTGTGCAACTATACCATGAAT 59.869 40.000 0.00 0.00 38.04 2.57
5224 6105 4.469586 TCCTCTGTGCAACTATACCATGAA 59.530 41.667 0.00 0.00 38.04 2.57
5225 6106 4.030216 TCCTCTGTGCAACTATACCATGA 58.970 43.478 0.00 0.00 38.04 3.07
5226 6107 4.375272 CTCCTCTGTGCAACTATACCATG 58.625 47.826 0.00 0.00 38.04 3.66
5227 6108 3.181461 GCTCCTCTGTGCAACTATACCAT 60.181 47.826 0.00 0.00 38.04 3.55
5228 6109 2.168521 GCTCCTCTGTGCAACTATACCA 59.831 50.000 0.00 0.00 38.04 3.25
5250 6131 0.817634 CAAGGTTGTGTGCGGGAGAA 60.818 55.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.