Multiple sequence alignment - TraesCS7B01G024700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G024700 chr7B 100.000 5234 0 0 1 5234 23523593 23528826 0.000000e+00 9666.0
1 TraesCS7B01G024700 chr7B 85.529 3310 415 43 839 4114 23516010 23519289 0.000000e+00 3400.0
2 TraesCS7B01G024700 chr7B 82.195 3471 491 69 924 4369 23933321 23936689 0.000000e+00 2868.0
3 TraesCS7B01G024700 chr7B 84.735 2627 317 52 1788 4368 23583127 23585715 0.000000e+00 2553.0
4 TraesCS7B01G024700 chr7B 84.741 2569 317 39 1811 4355 23597561 23600078 0.000000e+00 2503.0
5 TraesCS7B01G024700 chr7B 84.417 2522 316 38 1811 4291 23958851 23961336 0.000000e+00 2409.0
6 TraesCS7B01G024700 chr7B 83.721 1505 185 43 2819 4291 23639655 23641131 0.000000e+00 1367.0
7 TraesCS7B01G024700 chr7B 98.906 640 7 0 4365 5004 685389692 685389053 0.000000e+00 1144.0
8 TraesCS7B01G024700 chr7B 80.711 197 15 10 5011 5207 23585710 23585883 1.180000e-26 132.0
9 TraesCS7B01G024700 chr7B 90.000 60 6 0 5101 5160 23902511 23902570 1.560000e-10 78.7
10 TraesCS7B01G024700 chr7D 84.262 3501 468 56 839 4291 76929762 76933227 0.000000e+00 3336.0
11 TraesCS7B01G024700 chr7D 83.053 2974 448 36 779 3736 76636038 76633105 0.000000e+00 2649.0
12 TraesCS7B01G024700 chr7D 87.414 2336 239 29 1788 4114 76744393 76746682 0.000000e+00 2634.0
13 TraesCS7B01G024700 chr7D 85.877 2542 282 40 1779 4291 76920112 76922605 0.000000e+00 2634.0
14 TraesCS7B01G024700 chr7D 82.690 2981 461 35 777 3733 76625395 76622446 0.000000e+00 2595.0
15 TraesCS7B01G024700 chr7D 86.093 2337 280 25 1788 4114 76785009 76787310 0.000000e+00 2473.0
16 TraesCS7B01G024700 chr7D 86.098 2194 264 26 1937 4114 76973469 76975637 0.000000e+00 2324.0
17 TraesCS7B01G024700 chr7D 86.544 2118 216 32 2274 4367 77045885 77047957 0.000000e+00 2268.0
18 TraesCS7B01G024700 chr7D 84.016 1952 250 30 2167 4102 76955728 76957633 0.000000e+00 1820.0
19 TraesCS7B01G024700 chr7D 90.372 1423 81 22 331 1736 76953986 76955369 0.000000e+00 1818.0
20 TraesCS7B01G024700 chr7D 94.069 961 46 3 776 1736 76919160 76920109 0.000000e+00 1448.0
21 TraesCS7B01G024700 chr7D 87.594 927 112 2 817 1743 76947289 76948212 0.000000e+00 1072.0
22 TraesCS7B01G024700 chr7D 86.857 913 106 12 839 1742 76743476 76744383 0.000000e+00 1009.0
23 TraesCS7B01G024700 chr7D 84.914 875 124 8 1795 2665 7561904 7562774 0.000000e+00 878.0
24 TraesCS7B01G024700 chr7D 84.764 466 36 14 295 749 76918720 76919161 8.050000e-118 435.0
25 TraesCS7B01G024700 chr7D 80.460 435 64 16 3800 4232 76622357 76621942 3.940000e-81 313.0
26 TraesCS7B01G024700 chr7D 81.325 332 38 13 245 569 76947074 76946760 1.130000e-61 248.0
27 TraesCS7B01G024700 chr7D 86.730 211 15 6 4163 4366 76957750 76957954 6.820000e-54 222.0
28 TraesCS7B01G024700 chr7D 88.535 157 14 2 4138 4294 76787403 76787555 2.490000e-43 187.0
29 TraesCS7B01G024700 chr7D 89.313 131 13 1 5079 5209 76975703 76975832 4.190000e-36 163.0
30 TraesCS7B01G024700 chr7D 88.095 84 10 0 476 559 76946635 76946552 3.340000e-17 100.0
31 TraesCS7B01G024700 chr7A 87.310 2364 248 27 1788 4139 80862814 80865137 0.000000e+00 2656.0
32 TraesCS7B01G024700 chr7A 87.459 909 104 9 839 1742 80861901 80862804 0.000000e+00 1038.0
33 TraesCS7B01G024700 chr7A 88.163 245 20 5 4129 4368 80865225 80865465 3.090000e-72 283.0
34 TraesCS7B01G024700 chr7A 86.385 213 18 6 5011 5216 80865460 80865668 6.820000e-54 222.0
35 TraesCS7B01G024700 chr4A 99.215 637 5 0 4365 5001 578157051 578156415 0.000000e+00 1149.0
36 TraesCS7B01G024700 chr4A 98.607 646 9 0 4365 5010 41811348 41810703 0.000000e+00 1144.0
37 TraesCS7B01G024700 chr4A 98.452 646 10 0 4365 5010 689075261 689074616 0.000000e+00 1138.0
38 TraesCS7B01G024700 chr4A 85.075 938 129 10 1794 2725 731616020 731615088 0.000000e+00 946.0
39 TraesCS7B01G024700 chr3B 99.215 637 5 0 4365 5001 53351999 53351363 0.000000e+00 1149.0
40 TraesCS7B01G024700 chr3B 86.079 862 110 7 1794 2650 741463995 741464851 0.000000e+00 918.0
41 TraesCS7B01G024700 chr6A 98.910 642 7 0 4365 5006 234186666 234186025 0.000000e+00 1147.0
42 TraesCS7B01G024700 chr4B 98.760 645 7 1 4365 5009 286791979 286792622 0.000000e+00 1146.0
43 TraesCS7B01G024700 chr3D 98.600 643 8 1 4365 5006 369408402 369409044 0.000000e+00 1136.0
44 TraesCS7B01G024700 chr5B 98.009 653 12 1 4365 5017 222250614 222249963 0.000000e+00 1133.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G024700 chr7B 23523593 23528826 5233 False 9666.000000 9666 100.000000 1 5234 1 chr7B.!!$F2 5233
1 TraesCS7B01G024700 chr7B 23516010 23519289 3279 False 3400.000000 3400 85.529000 839 4114 1 chr7B.!!$F1 3275
2 TraesCS7B01G024700 chr7B 23933321 23936689 3368 False 2868.000000 2868 82.195000 924 4369 1 chr7B.!!$F6 3445
3 TraesCS7B01G024700 chr7B 23597561 23600078 2517 False 2503.000000 2503 84.741000 1811 4355 1 chr7B.!!$F3 2544
4 TraesCS7B01G024700 chr7B 23958851 23961336 2485 False 2409.000000 2409 84.417000 1811 4291 1 chr7B.!!$F7 2480
5 TraesCS7B01G024700 chr7B 23639655 23641131 1476 False 1367.000000 1367 83.721000 2819 4291 1 chr7B.!!$F4 1472
6 TraesCS7B01G024700 chr7B 23583127 23585883 2756 False 1342.500000 2553 82.723000 1788 5207 2 chr7B.!!$F8 3419
7 TraesCS7B01G024700 chr7B 685389053 685389692 639 True 1144.000000 1144 98.906000 4365 5004 1 chr7B.!!$R1 639
8 TraesCS7B01G024700 chr7D 76929762 76933227 3465 False 3336.000000 3336 84.262000 839 4291 1 chr7D.!!$F2 3452
9 TraesCS7B01G024700 chr7D 76633105 76636038 2933 True 2649.000000 2649 83.053000 779 3736 1 chr7D.!!$R1 2957
10 TraesCS7B01G024700 chr7D 77045885 77047957 2072 False 2268.000000 2268 86.544000 2274 4367 1 chr7D.!!$F4 2093
11 TraesCS7B01G024700 chr7D 76743476 76746682 3206 False 1821.500000 2634 87.135500 839 4114 2 chr7D.!!$F5 3275
12 TraesCS7B01G024700 chr7D 76918720 76922605 3885 False 1505.666667 2634 88.236667 295 4291 3 chr7D.!!$F7 3996
13 TraesCS7B01G024700 chr7D 76621942 76625395 3453 True 1454.000000 2595 81.575000 777 4232 2 chr7D.!!$R2 3455
14 TraesCS7B01G024700 chr7D 76785009 76787555 2546 False 1330.000000 2473 87.314000 1788 4294 2 chr7D.!!$F6 2506
15 TraesCS7B01G024700 chr7D 76953986 76957954 3968 False 1286.666667 1820 87.039333 331 4366 3 chr7D.!!$F8 4035
16 TraesCS7B01G024700 chr7D 76973469 76975832 2363 False 1243.500000 2324 87.705500 1937 5209 2 chr7D.!!$F9 3272
17 TraesCS7B01G024700 chr7D 76947289 76948212 923 False 1072.000000 1072 87.594000 817 1743 1 chr7D.!!$F3 926
18 TraesCS7B01G024700 chr7D 7561904 7562774 870 False 878.000000 878 84.914000 1795 2665 1 chr7D.!!$F1 870
19 TraesCS7B01G024700 chr7A 80861901 80865668 3767 False 1049.750000 2656 87.329250 839 5216 4 chr7A.!!$F1 4377
20 TraesCS7B01G024700 chr4A 578156415 578157051 636 True 1149.000000 1149 99.215000 4365 5001 1 chr4A.!!$R2 636
21 TraesCS7B01G024700 chr4A 41810703 41811348 645 True 1144.000000 1144 98.607000 4365 5010 1 chr4A.!!$R1 645
22 TraesCS7B01G024700 chr4A 689074616 689075261 645 True 1138.000000 1138 98.452000 4365 5010 1 chr4A.!!$R3 645
23 TraesCS7B01G024700 chr4A 731615088 731616020 932 True 946.000000 946 85.075000 1794 2725 1 chr4A.!!$R4 931
24 TraesCS7B01G024700 chr3B 53351363 53351999 636 True 1149.000000 1149 99.215000 4365 5001 1 chr3B.!!$R1 636
25 TraesCS7B01G024700 chr3B 741463995 741464851 856 False 918.000000 918 86.079000 1794 2650 1 chr3B.!!$F1 856
26 TraesCS7B01G024700 chr6A 234186025 234186666 641 True 1147.000000 1147 98.910000 4365 5006 1 chr6A.!!$R1 641
27 TraesCS7B01G024700 chr4B 286791979 286792622 643 False 1146.000000 1146 98.760000 4365 5009 1 chr4B.!!$F1 644
28 TraesCS7B01G024700 chr3D 369408402 369409044 642 False 1136.000000 1136 98.600000 4365 5006 1 chr3D.!!$F1 641
29 TraesCS7B01G024700 chr5B 222249963 222250614 651 True 1133.000000 1133 98.009000 4365 5017 1 chr5B.!!$R1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.109781 CGCTTGCTTTTACATGCCGT 60.110 50.0 0.00 0.00 37.41 5.68 F
241 242 0.109964 TGCTTTTACATGCCGTTCGC 60.110 50.0 0.00 0.00 38.31 4.70 F
246 247 0.246910 TTACATGCCGTTCGCCTACA 59.753 50.0 0.00 0.00 36.24 2.74 F
1297 1360 0.250513 GATCGGCAAGTCCACTTCCT 59.749 55.0 0.00 0.00 33.11 3.36 F
1683 1746 0.534877 TGAAGATGTGGCACTGCGTT 60.535 50.0 19.83 6.97 0.00 4.84 F
1691 1754 1.159713 TGGCACTGCGTTTCAGACAG 61.160 55.0 0.00 0.00 45.72 3.51 F
2805 2956 1.171549 TGCGCATCAGTTTCAAGGCA 61.172 50.0 5.66 0.00 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 1844 0.909623 AGACAGGTACCAATTCCCGG 59.090 55.000 15.94 0.00 0.00 5.73 R
1776 1845 1.406887 CCAGACAGGTACCAATTCCCG 60.407 57.143 15.94 1.66 0.00 5.14 R
1878 1962 2.103373 TCCCACATCCTCTTCTCTTCG 58.897 52.381 0.00 0.00 0.00 3.79 R
2916 3067 0.392998 ATTGCCGTAGTCCCTTGCAG 60.393 55.000 0.00 0.00 0.00 4.41 R
3670 3831 0.107459 AGCTTAGGGCAGCAGCTAAC 60.107 55.000 3.15 0.00 42.25 2.34 R
3672 3833 0.107508 CAAGCTTAGGGCAGCAGCTA 60.108 55.000 5.44 0.00 43.28 3.32 R
4608 4942 0.033405 TCCGGACTCGATCCTTCCTT 60.033 55.000 0.00 0.00 46.69 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.925506 TCGAAGACCAACATTATAGTGGA 57.074 39.130 0.00 0.00 0.00 4.02
23 24 6.288941 TCGAAGACCAACATTATAGTGGAA 57.711 37.500 0.00 0.00 0.00 3.53
24 25 6.884832 TCGAAGACCAACATTATAGTGGAAT 58.115 36.000 0.00 0.00 0.00 3.01
25 26 6.984474 TCGAAGACCAACATTATAGTGGAATC 59.016 38.462 0.00 0.00 0.00 2.52
26 27 6.986817 CGAAGACCAACATTATAGTGGAATCT 59.013 38.462 0.00 0.00 0.00 2.40
27 28 7.042456 CGAAGACCAACATTATAGTGGAATCTG 60.042 40.741 0.00 0.00 0.00 2.90
28 29 6.058183 AGACCAACATTATAGTGGAATCTGC 58.942 40.000 0.00 0.00 0.00 4.26
29 30 6.006275 ACCAACATTATAGTGGAATCTGCT 57.994 37.500 0.00 0.00 0.00 4.24
30 31 6.426587 ACCAACATTATAGTGGAATCTGCTT 58.573 36.000 0.00 0.00 0.00 3.91
31 32 7.573710 ACCAACATTATAGTGGAATCTGCTTA 58.426 34.615 0.00 0.00 0.00 3.09
32 33 7.716998 ACCAACATTATAGTGGAATCTGCTTAG 59.283 37.037 0.00 0.00 0.00 2.18
33 34 7.308229 CCAACATTATAGTGGAATCTGCTTAGC 60.308 40.741 0.00 0.00 0.00 3.09
34 35 6.234177 ACATTATAGTGGAATCTGCTTAGCC 58.766 40.000 0.29 0.00 0.00 3.93
35 36 3.778954 ATAGTGGAATCTGCTTAGCCC 57.221 47.619 0.29 0.00 0.00 5.19
36 37 1.289160 AGTGGAATCTGCTTAGCCCA 58.711 50.000 0.29 0.00 0.00 5.36
37 38 1.635487 AGTGGAATCTGCTTAGCCCAA 59.365 47.619 0.29 0.00 0.00 4.12
38 39 2.041620 AGTGGAATCTGCTTAGCCCAAA 59.958 45.455 0.29 0.00 0.00 3.28
39 40 2.825532 GTGGAATCTGCTTAGCCCAAAA 59.174 45.455 0.29 0.00 0.00 2.44
40 41 3.258123 GTGGAATCTGCTTAGCCCAAAAA 59.742 43.478 0.29 0.00 0.00 1.94
41 42 3.258123 TGGAATCTGCTTAGCCCAAAAAC 59.742 43.478 0.29 0.00 0.00 2.43
42 43 3.258123 GGAATCTGCTTAGCCCAAAAACA 59.742 43.478 0.29 0.00 0.00 2.83
43 44 3.942130 ATCTGCTTAGCCCAAAAACAC 57.058 42.857 0.29 0.00 0.00 3.32
44 45 2.944129 TCTGCTTAGCCCAAAAACACT 58.056 42.857 0.29 0.00 0.00 3.55
45 46 2.622942 TCTGCTTAGCCCAAAAACACTG 59.377 45.455 0.29 0.00 0.00 3.66
46 47 2.362077 CTGCTTAGCCCAAAAACACTGT 59.638 45.455 0.29 0.00 0.00 3.55
47 48 3.556999 TGCTTAGCCCAAAAACACTGTA 58.443 40.909 0.29 0.00 0.00 2.74
48 49 3.954904 TGCTTAGCCCAAAAACACTGTAA 59.045 39.130 0.29 0.00 0.00 2.41
49 50 4.202070 TGCTTAGCCCAAAAACACTGTAAC 60.202 41.667 0.29 0.00 0.00 2.50
50 51 4.037565 GCTTAGCCCAAAAACACTGTAACT 59.962 41.667 0.00 0.00 0.00 2.24
51 52 5.239963 GCTTAGCCCAAAAACACTGTAACTA 59.760 40.000 0.00 0.00 0.00 2.24
52 53 6.567891 GCTTAGCCCAAAAACACTGTAACTAG 60.568 42.308 0.00 0.00 0.00 2.57
53 54 3.568430 AGCCCAAAAACACTGTAACTAGC 59.432 43.478 0.00 0.00 0.00 3.42
54 55 3.608474 GCCCAAAAACACTGTAACTAGCG 60.608 47.826 0.00 0.00 0.00 4.26
55 56 3.551551 CCAAAAACACTGTAACTAGCGC 58.448 45.455 0.00 0.00 0.00 5.92
56 57 3.250040 CCAAAAACACTGTAACTAGCGCT 59.750 43.478 17.26 17.26 0.00 5.92
57 58 4.449743 CCAAAAACACTGTAACTAGCGCTA 59.550 41.667 17.75 17.75 0.00 4.26
58 59 5.389516 CCAAAAACACTGTAACTAGCGCTAG 60.390 44.000 36.70 36.70 39.04 3.42
59 60 3.505464 AACACTGTAACTAGCGCTAGG 57.495 47.619 39.50 26.69 37.49 3.02
60 61 1.134560 ACACTGTAACTAGCGCTAGGC 59.865 52.381 39.50 29.61 44.05 3.93
71 72 2.636768 GCGCTAGGCAAAACTGAATT 57.363 45.000 0.00 0.00 42.87 2.17
72 73 2.946564 GCGCTAGGCAAAACTGAATTT 58.053 42.857 0.00 0.00 42.87 1.82
73 74 2.663119 GCGCTAGGCAAAACTGAATTTG 59.337 45.455 0.00 6.40 42.87 2.32
74 75 3.244976 CGCTAGGCAAAACTGAATTTGG 58.755 45.455 10.83 0.00 39.99 3.28
75 76 3.588955 GCTAGGCAAAACTGAATTTGGG 58.411 45.455 10.83 0.00 39.99 4.12
76 77 3.006859 GCTAGGCAAAACTGAATTTGGGT 59.993 43.478 10.83 0.00 39.99 4.51
77 78 4.219725 GCTAGGCAAAACTGAATTTGGGTA 59.780 41.667 10.83 0.00 39.99 3.69
78 79 4.871933 AGGCAAAACTGAATTTGGGTAG 57.128 40.909 10.83 0.00 39.99 3.18
79 80 4.223144 AGGCAAAACTGAATTTGGGTAGT 58.777 39.130 10.83 0.00 39.99 2.73
80 81 5.390387 AGGCAAAACTGAATTTGGGTAGTA 58.610 37.500 10.83 0.00 39.99 1.82
81 82 5.836358 AGGCAAAACTGAATTTGGGTAGTAA 59.164 36.000 10.83 0.00 39.99 2.24
82 83 5.924254 GGCAAAACTGAATTTGGGTAGTAAC 59.076 40.000 10.83 0.00 39.99 2.50
83 84 6.461788 GGCAAAACTGAATTTGGGTAGTAACA 60.462 38.462 10.83 0.00 39.99 2.41
84 85 6.981559 GCAAAACTGAATTTGGGTAGTAACAA 59.018 34.615 10.83 0.00 39.99 2.83
85 86 7.492994 GCAAAACTGAATTTGGGTAGTAACAAA 59.507 33.333 10.83 4.35 39.99 2.83
86 87 9.541143 CAAAACTGAATTTGGGTAGTAACAAAT 57.459 29.630 7.79 7.79 46.11 2.32
87 88 9.541143 AAAACTGAATTTGGGTAGTAACAAATG 57.459 29.630 12.34 5.78 44.11 2.32
88 89 7.227049 ACTGAATTTGGGTAGTAACAAATGG 57.773 36.000 12.34 9.45 44.11 3.16
89 90 6.031751 TGAATTTGGGTAGTAACAAATGGC 57.968 37.500 12.34 9.49 44.11 4.40
90 91 5.777732 TGAATTTGGGTAGTAACAAATGGCT 59.222 36.000 12.34 1.47 44.11 4.75
91 92 6.948886 TGAATTTGGGTAGTAACAAATGGCTA 59.051 34.615 12.34 0.00 44.11 3.93
92 93 7.122055 TGAATTTGGGTAGTAACAAATGGCTAG 59.878 37.037 12.34 0.00 44.11 3.42
93 94 5.508280 TTGGGTAGTAACAAATGGCTAGT 57.492 39.130 0.00 0.00 0.00 2.57
94 95 5.093849 TGGGTAGTAACAAATGGCTAGTC 57.906 43.478 0.00 0.00 0.00 2.59
95 96 4.781087 TGGGTAGTAACAAATGGCTAGTCT 59.219 41.667 0.00 0.00 0.00 3.24
96 97 5.116882 GGGTAGTAACAAATGGCTAGTCTG 58.883 45.833 0.00 0.00 0.00 3.51
97 98 5.105064 GGGTAGTAACAAATGGCTAGTCTGA 60.105 44.000 0.00 0.00 0.00 3.27
98 99 6.408206 GGGTAGTAACAAATGGCTAGTCTGAT 60.408 42.308 0.00 0.00 0.00 2.90
99 100 6.480320 GGTAGTAACAAATGGCTAGTCTGATG 59.520 42.308 0.00 0.00 0.00 3.07
100 101 4.878397 AGTAACAAATGGCTAGTCTGATGC 59.122 41.667 0.00 0.00 0.00 3.91
101 102 3.354948 ACAAATGGCTAGTCTGATGCA 57.645 42.857 0.00 0.00 0.00 3.96
102 103 3.276857 ACAAATGGCTAGTCTGATGCAG 58.723 45.455 0.00 0.00 0.00 4.41
103 104 3.054875 ACAAATGGCTAGTCTGATGCAGA 60.055 43.478 0.00 0.00 38.25 4.26
104 105 4.135306 CAAATGGCTAGTCTGATGCAGAT 58.865 43.478 0.00 0.00 42.73 2.90
105 106 2.904697 TGGCTAGTCTGATGCAGATG 57.095 50.000 0.00 0.00 42.73 2.90
106 107 1.202615 TGGCTAGTCTGATGCAGATGC 60.203 52.381 0.00 0.00 42.73 3.91
107 108 1.070445 GGCTAGTCTGATGCAGATGCT 59.930 52.381 6.35 6.46 42.73 3.79
108 109 2.406130 GCTAGTCTGATGCAGATGCTC 58.594 52.381 6.35 2.33 42.73 4.26
109 110 2.036217 GCTAGTCTGATGCAGATGCTCT 59.964 50.000 6.35 0.00 42.73 4.09
110 111 3.255395 GCTAGTCTGATGCAGATGCTCTA 59.745 47.826 6.35 0.00 42.73 2.43
111 112 4.261952 GCTAGTCTGATGCAGATGCTCTAA 60.262 45.833 6.35 0.00 42.73 2.10
112 113 4.325028 AGTCTGATGCAGATGCTCTAAG 57.675 45.455 6.35 0.00 42.73 2.18
113 114 2.801679 GTCTGATGCAGATGCTCTAAGC 59.198 50.000 6.35 0.00 42.73 3.09
126 127 4.392921 GCTCTAAGCATCTACCAACAGA 57.607 45.455 0.00 0.00 41.89 3.41
127 128 4.759782 GCTCTAAGCATCTACCAACAGAA 58.240 43.478 0.00 0.00 41.89 3.02
128 129 5.178797 GCTCTAAGCATCTACCAACAGAAA 58.821 41.667 0.00 0.00 41.89 2.52
129 130 5.064071 GCTCTAAGCATCTACCAACAGAAAC 59.936 44.000 0.00 0.00 41.89 2.78
130 131 6.109156 TCTAAGCATCTACCAACAGAAACA 57.891 37.500 0.00 0.00 0.00 2.83
131 132 5.932303 TCTAAGCATCTACCAACAGAAACAC 59.068 40.000 0.00 0.00 0.00 3.32
132 133 3.412386 AGCATCTACCAACAGAAACACC 58.588 45.455 0.00 0.00 0.00 4.16
133 134 3.073062 AGCATCTACCAACAGAAACACCT 59.927 43.478 0.00 0.00 0.00 4.00
134 135 3.437049 GCATCTACCAACAGAAACACCTC 59.563 47.826 0.00 0.00 0.00 3.85
135 136 4.641396 CATCTACCAACAGAAACACCTCA 58.359 43.478 0.00 0.00 0.00 3.86
136 137 4.336889 TCTACCAACAGAAACACCTCAG 57.663 45.455 0.00 0.00 0.00 3.35
137 138 1.680338 ACCAACAGAAACACCTCAGC 58.320 50.000 0.00 0.00 0.00 4.26
138 139 1.064758 ACCAACAGAAACACCTCAGCA 60.065 47.619 0.00 0.00 0.00 4.41
139 140 2.023673 CCAACAGAAACACCTCAGCAA 58.976 47.619 0.00 0.00 0.00 3.91
140 141 2.624838 CCAACAGAAACACCTCAGCAAT 59.375 45.455 0.00 0.00 0.00 3.56
141 142 3.820467 CCAACAGAAACACCTCAGCAATA 59.180 43.478 0.00 0.00 0.00 1.90
142 143 4.460382 CCAACAGAAACACCTCAGCAATAT 59.540 41.667 0.00 0.00 0.00 1.28
143 144 5.047802 CCAACAGAAACACCTCAGCAATATT 60.048 40.000 0.00 0.00 0.00 1.28
144 145 6.449698 CAACAGAAACACCTCAGCAATATTT 58.550 36.000 0.00 0.00 0.00 1.40
145 146 6.655078 ACAGAAACACCTCAGCAATATTTT 57.345 33.333 0.00 0.00 0.00 1.82
146 147 7.054491 ACAGAAACACCTCAGCAATATTTTT 57.946 32.000 0.00 0.00 0.00 1.94
147 148 8.177119 ACAGAAACACCTCAGCAATATTTTTA 57.823 30.769 0.00 0.00 0.00 1.52
148 149 8.806146 ACAGAAACACCTCAGCAATATTTTTAT 58.194 29.630 0.00 0.00 0.00 1.40
149 150 9.294030 CAGAAACACCTCAGCAATATTTTTATC 57.706 33.333 0.00 0.00 0.00 1.75
150 151 9.247861 AGAAACACCTCAGCAATATTTTTATCT 57.752 29.630 0.00 0.00 0.00 1.98
151 152 9.860898 GAAACACCTCAGCAATATTTTTATCTT 57.139 29.630 0.00 0.00 0.00 2.40
153 154 9.860898 AACACCTCAGCAATATTTTTATCTTTC 57.139 29.630 0.00 0.00 0.00 2.62
154 155 9.247861 ACACCTCAGCAATATTTTTATCTTTCT 57.752 29.630 0.00 0.00 0.00 2.52
157 158 9.741647 CCTCAGCAATATTTTTATCTTTCTTCC 57.258 33.333 0.00 0.00 0.00 3.46
169 170 9.533831 TTTTATCTTTCTTCCTTTTATGAGGCT 57.466 29.630 0.00 0.00 36.71 4.58
170 171 8.738645 TTATCTTTCTTCCTTTTATGAGGCTC 57.261 34.615 7.79 7.79 36.71 4.70
171 172 6.126863 TCTTTCTTCCTTTTATGAGGCTCA 57.873 37.500 21.19 21.19 36.71 4.26
172 173 6.725364 TCTTTCTTCCTTTTATGAGGCTCAT 58.275 36.000 30.89 30.89 40.72 2.90
173 174 6.600822 TCTTTCTTCCTTTTATGAGGCTCATG 59.399 38.462 34.43 20.10 37.70 3.07
174 175 4.202441 TCTTCCTTTTATGAGGCTCATGC 58.798 43.478 34.43 1.78 37.70 4.06
190 191 6.061231 GCTCATGCCTTAGTAATGTTTACC 57.939 41.667 0.00 0.00 0.00 2.85
191 192 5.823045 GCTCATGCCTTAGTAATGTTTACCT 59.177 40.000 0.00 0.00 0.00 3.08
192 193 6.017852 GCTCATGCCTTAGTAATGTTTACCTC 60.018 42.308 0.00 0.00 0.00 3.85
193 194 7.195374 TCATGCCTTAGTAATGTTTACCTCT 57.805 36.000 0.00 0.00 0.00 3.69
194 195 7.047891 TCATGCCTTAGTAATGTTTACCTCTG 58.952 38.462 0.00 0.00 0.00 3.35
195 196 5.183228 TGCCTTAGTAATGTTTACCTCTGC 58.817 41.667 0.00 0.00 0.00 4.26
196 197 5.183228 GCCTTAGTAATGTTTACCTCTGCA 58.817 41.667 0.00 0.00 0.00 4.41
197 198 5.064834 GCCTTAGTAATGTTTACCTCTGCAC 59.935 44.000 0.00 0.00 0.00 4.57
198 199 5.585047 CCTTAGTAATGTTTACCTCTGCACC 59.415 44.000 0.00 0.00 0.00 5.01
199 200 4.634012 AGTAATGTTTACCTCTGCACCA 57.366 40.909 0.00 0.00 0.00 4.17
200 201 4.980573 AGTAATGTTTACCTCTGCACCAA 58.019 39.130 0.00 0.00 0.00 3.67
201 202 5.570320 AGTAATGTTTACCTCTGCACCAAT 58.430 37.500 0.00 0.00 0.00 3.16
202 203 4.789012 AATGTTTACCTCTGCACCAATG 57.211 40.909 0.00 0.00 0.00 2.82
219 220 4.006532 GCAATGTGCATGCCATCG 57.993 55.556 16.68 8.85 44.26 3.84
220 221 2.235016 GCAATGTGCATGCCATCGC 61.235 57.895 16.68 14.91 44.26 4.58
221 222 1.435925 CAATGTGCATGCCATCGCT 59.564 52.632 16.68 0.93 35.36 4.93
222 223 0.179121 CAATGTGCATGCCATCGCTT 60.179 50.000 16.68 1.40 35.36 4.68
223 224 0.179121 AATGTGCATGCCATCGCTTG 60.179 50.000 16.68 0.00 41.81 4.01
228 229 3.429043 CATGCCATCGCTTGCTTTT 57.571 47.368 0.00 0.00 33.87 2.27
229 230 2.565210 CATGCCATCGCTTGCTTTTA 57.435 45.000 0.00 0.00 33.87 1.52
230 231 2.187707 CATGCCATCGCTTGCTTTTAC 58.812 47.619 0.00 0.00 33.87 2.01
231 232 1.242989 TGCCATCGCTTGCTTTTACA 58.757 45.000 0.00 0.00 35.36 2.41
232 233 1.818060 TGCCATCGCTTGCTTTTACAT 59.182 42.857 0.00 0.00 35.36 2.29
233 234 2.187707 GCCATCGCTTGCTTTTACATG 58.812 47.619 0.00 0.00 0.00 3.21
234 235 2.187707 CCATCGCTTGCTTTTACATGC 58.812 47.619 0.00 0.00 37.36 4.06
235 236 2.187707 CATCGCTTGCTTTTACATGCC 58.812 47.619 0.00 0.00 37.41 4.40
236 237 0.167908 TCGCTTGCTTTTACATGCCG 59.832 50.000 0.00 0.00 37.41 5.69
237 238 0.109781 CGCTTGCTTTTACATGCCGT 60.110 50.000 0.00 0.00 37.41 5.68
238 239 1.665735 CGCTTGCTTTTACATGCCGTT 60.666 47.619 0.00 0.00 37.41 4.44
239 240 1.985684 GCTTGCTTTTACATGCCGTTC 59.014 47.619 0.00 0.00 35.33 3.95
240 241 2.241722 CTTGCTTTTACATGCCGTTCG 58.758 47.619 0.00 0.00 0.00 3.95
241 242 0.109964 TGCTTTTACATGCCGTTCGC 60.110 50.000 0.00 0.00 38.31 4.70
242 243 0.796870 GCTTTTACATGCCGTTCGCC 60.797 55.000 0.00 0.00 36.24 5.54
243 244 0.802494 CTTTTACATGCCGTTCGCCT 59.198 50.000 0.00 0.00 36.24 5.52
244 245 2.004017 CTTTTACATGCCGTTCGCCTA 58.996 47.619 0.00 0.00 36.24 3.93
245 246 1.361793 TTTACATGCCGTTCGCCTAC 58.638 50.000 0.00 0.00 36.24 3.18
246 247 0.246910 TTACATGCCGTTCGCCTACA 59.753 50.000 0.00 0.00 36.24 2.74
247 248 0.462375 TACATGCCGTTCGCCTACAT 59.538 50.000 0.00 0.00 36.24 2.29
248 249 0.462375 ACATGCCGTTCGCCTACATA 59.538 50.000 0.00 0.00 36.24 2.29
249 250 0.859232 CATGCCGTTCGCCTACATAC 59.141 55.000 0.00 0.00 36.24 2.39
250 251 0.596600 ATGCCGTTCGCCTACATACG 60.597 55.000 0.00 0.00 36.24 3.06
251 252 2.583164 GCCGTTCGCCTACATACGC 61.583 63.158 0.00 0.00 32.97 4.42
252 253 1.947642 CCGTTCGCCTACATACGCC 60.948 63.158 0.00 0.00 32.97 5.68
253 254 1.065273 CGTTCGCCTACATACGCCT 59.935 57.895 0.00 0.00 0.00 5.52
254 255 0.308684 CGTTCGCCTACATACGCCTA 59.691 55.000 0.00 0.00 0.00 3.93
255 256 1.763634 GTTCGCCTACATACGCCTAC 58.236 55.000 0.00 0.00 0.00 3.18
257 258 1.728426 CGCCTACATACGCCTACGC 60.728 63.158 0.00 0.00 45.53 4.42
258 259 1.372623 GCCTACATACGCCTACGCC 60.373 63.158 0.00 0.00 45.53 5.68
259 260 1.081641 CCTACATACGCCTACGCCG 60.082 63.158 0.00 0.00 45.53 6.46
260 261 1.081641 CTACATACGCCTACGCCGG 60.082 63.158 0.00 0.00 45.53 6.13
261 262 1.789078 CTACATACGCCTACGCCGGT 61.789 60.000 1.90 0.00 45.53 5.28
262 263 1.383456 TACATACGCCTACGCCGGTT 61.383 55.000 1.90 0.00 45.53 4.44
263 264 1.947642 CATACGCCTACGCCGGTTC 60.948 63.158 1.90 0.00 45.53 3.62
264 265 2.417257 ATACGCCTACGCCGGTTCA 61.417 57.895 1.90 0.00 45.53 3.18
265 266 1.947597 ATACGCCTACGCCGGTTCAA 61.948 55.000 1.90 0.00 45.53 2.69
266 267 2.817470 TACGCCTACGCCGGTTCAAC 62.817 60.000 1.90 0.00 45.53 3.18
267 268 2.357760 GCCTACGCCGGTTCAACA 60.358 61.111 1.90 0.00 0.00 3.33
268 269 1.743995 GCCTACGCCGGTTCAACAT 60.744 57.895 1.90 0.00 0.00 2.71
269 270 1.977594 GCCTACGCCGGTTCAACATG 61.978 60.000 1.90 0.00 0.00 3.21
270 271 0.672401 CCTACGCCGGTTCAACATGT 60.672 55.000 1.90 0.00 0.00 3.21
271 272 1.404449 CCTACGCCGGTTCAACATGTA 60.404 52.381 1.90 0.00 0.00 2.29
272 273 2.546778 CTACGCCGGTTCAACATGTAT 58.453 47.619 1.90 0.00 0.00 2.29
273 274 2.676632 ACGCCGGTTCAACATGTATA 57.323 45.000 1.90 0.00 0.00 1.47
274 275 2.975266 ACGCCGGTTCAACATGTATAA 58.025 42.857 1.90 0.00 0.00 0.98
275 276 3.537580 ACGCCGGTTCAACATGTATAAT 58.462 40.909 1.90 0.00 0.00 1.28
276 277 3.558418 ACGCCGGTTCAACATGTATAATC 59.442 43.478 1.90 0.00 0.00 1.75
277 278 3.362596 CGCCGGTTCAACATGTATAATCG 60.363 47.826 15.33 15.33 0.00 3.34
278 279 3.606153 GCCGGTTCAACATGTATAATCGC 60.606 47.826 16.37 10.41 0.00 4.58
279 280 3.558006 CCGGTTCAACATGTATAATCGCA 59.442 43.478 16.37 0.00 0.00 5.10
280 281 4.318760 CCGGTTCAACATGTATAATCGCAG 60.319 45.833 16.37 4.67 0.00 5.18
281 282 4.506288 CGGTTCAACATGTATAATCGCAGA 59.494 41.667 11.42 0.00 45.75 4.26
282 283 5.556382 CGGTTCAACATGTATAATCGCAGAC 60.556 44.000 11.42 0.00 42.51 3.51
283 284 5.293324 GGTTCAACATGTATAATCGCAGACA 59.707 40.000 0.00 0.00 42.51 3.41
284 285 6.414079 GTTCAACATGTATAATCGCAGACAG 58.586 40.000 0.00 0.00 42.51 3.51
285 286 5.901552 TCAACATGTATAATCGCAGACAGA 58.098 37.500 0.00 0.00 42.51 3.41
286 287 6.337356 TCAACATGTATAATCGCAGACAGAA 58.663 36.000 0.00 0.00 42.51 3.02
287 288 6.476706 TCAACATGTATAATCGCAGACAGAAG 59.523 38.462 0.00 0.00 42.51 2.85
288 289 5.907207 ACATGTATAATCGCAGACAGAAGT 58.093 37.500 0.00 0.00 42.51 3.01
289 290 7.039313 ACATGTATAATCGCAGACAGAAGTA 57.961 36.000 0.00 0.00 42.51 2.24
290 291 7.661968 ACATGTATAATCGCAGACAGAAGTAT 58.338 34.615 0.00 0.00 42.51 2.12
291 292 8.793592 ACATGTATAATCGCAGACAGAAGTATA 58.206 33.333 0.00 0.00 42.51 1.47
292 293 9.626045 CATGTATAATCGCAGACAGAAGTATAA 57.374 33.333 0.00 0.00 42.51 0.98
299 300 7.930513 TCGCAGACAGAAGTATAATAACATG 57.069 36.000 0.00 0.00 0.00 3.21
300 301 6.923508 TCGCAGACAGAAGTATAATAACATGG 59.076 38.462 0.00 0.00 0.00 3.66
341 342 2.752144 CGGAGACCGTGAGTACATAC 57.248 55.000 1.80 0.00 42.73 2.39
342 343 2.011947 CGGAGACCGTGAGTACATACA 58.988 52.381 1.80 0.00 42.73 2.29
343 344 2.223203 CGGAGACCGTGAGTACATACAC 60.223 54.545 1.80 1.84 42.73 2.90
344 345 2.751259 GGAGACCGTGAGTACATACACA 59.249 50.000 14.64 0.00 36.91 3.72
346 347 2.163815 AGACCGTGAGTACATACACAGC 59.836 50.000 14.64 6.27 36.91 4.40
347 348 1.203994 ACCGTGAGTACATACACAGCC 59.796 52.381 14.64 0.00 36.91 4.85
348 349 1.470979 CCGTGAGTACATACACAGCCC 60.471 57.143 14.64 0.00 36.91 5.19
349 350 1.203758 CGTGAGTACATACACAGCCCA 59.796 52.381 14.64 0.00 36.91 5.36
350 351 2.159099 CGTGAGTACATACACAGCCCAT 60.159 50.000 14.64 0.00 36.91 4.00
353 354 3.206150 GAGTACATACACAGCCCATTGG 58.794 50.000 0.00 0.00 0.00 3.16
357 358 3.238597 ACATACACAGCCCATTGGTTTT 58.761 40.909 1.20 0.00 0.00 2.43
371 372 2.862541 TGGTTTTACATGTGCTCAGCT 58.137 42.857 9.11 0.00 0.00 4.24
395 396 4.805719 CACATGCTATGCTCTCTTTCGTAA 59.194 41.667 0.00 0.00 0.00 3.18
396 397 5.464722 CACATGCTATGCTCTCTTTCGTAAT 59.535 40.000 0.00 0.00 0.00 1.89
397 398 6.018425 CACATGCTATGCTCTCTTTCGTAATT 60.018 38.462 0.00 0.00 0.00 1.40
398 399 6.201806 ACATGCTATGCTCTCTTTCGTAATTC 59.798 38.462 0.00 0.00 0.00 2.17
399 400 4.740205 TGCTATGCTCTCTTTCGTAATTCG 59.260 41.667 0.00 0.00 41.41 3.34
466 476 6.460399 GGTGTAGATCTAGGTAAGACAAGCAG 60.460 46.154 1.64 0.00 36.93 4.24
569 583 6.002062 AGAAAGCAAACACACAATAGCTAC 57.998 37.500 0.00 0.00 0.00 3.58
610 631 4.202388 GGGAGTTGTTTTACAGTACCCTGA 60.202 45.833 0.00 0.00 41.50 3.86
614 635 2.372837 TGTTTTACAGTACCCTGACCCC 59.627 50.000 0.00 0.00 41.50 4.95
618 645 1.080354 CAGTACCCTGACCCCTCCA 59.920 63.158 0.00 0.00 41.50 3.86
619 646 0.546747 CAGTACCCTGACCCCTCCAA 60.547 60.000 0.00 0.00 41.50 3.53
620 647 0.421904 AGTACCCTGACCCCTCCAAT 59.578 55.000 0.00 0.00 0.00 3.16
621 648 1.654997 AGTACCCTGACCCCTCCAATA 59.345 52.381 0.00 0.00 0.00 1.90
622 649 2.047830 GTACCCTGACCCCTCCAATAG 58.952 57.143 0.00 0.00 0.00 1.73
623 650 0.327576 ACCCTGACCCCTCCAATAGG 60.328 60.000 0.00 0.00 46.09 2.57
643 670 8.669243 CAATAGGACCAATACTCTCAGTTTTTC 58.331 37.037 0.00 0.00 0.00 2.29
734 761 4.021102 TGTCTCCACTTCCTTTCATTCC 57.979 45.455 0.00 0.00 0.00 3.01
749 776 0.481128 ATTCCCCTTTCACCAACGGT 59.519 50.000 0.00 0.00 35.62 4.83
766 793 1.684869 CGGTAGCACCCCATTCCAATT 60.685 52.381 0.00 0.00 33.75 2.32
770 797 2.738743 AGCACCCCATTCCAATTGTAG 58.261 47.619 4.43 0.00 0.00 2.74
793 820 2.640302 GGCGAGAGAGCTCCACACA 61.640 63.158 10.93 0.00 37.91 3.72
803 830 2.203640 TCCACACAGGAGGCGACT 60.204 61.111 0.00 0.00 43.07 4.18
804 831 1.076014 TCCACACAGGAGGCGACTA 59.924 57.895 0.00 0.00 43.07 2.59
858 885 0.824109 TGGATCTGCTCGATTTCGGT 59.176 50.000 0.00 0.00 40.29 4.69
939 982 3.681897 CCACAGATCTGTCAGTGCTTAAC 59.318 47.826 25.58 0.00 42.83 2.01
940 983 3.681897 CACAGATCTGTCAGTGCTTAACC 59.318 47.826 25.58 0.00 42.83 2.85
983 1043 3.813443 TGCTGCAGTTTCTTCTTCTTCT 58.187 40.909 16.64 0.00 0.00 2.85
1185 1248 3.092301 GAGCCAGAAAAATGCCTACCTT 58.908 45.455 0.00 0.00 0.00 3.50
1297 1360 0.250513 GATCGGCAAGTCCACTTCCT 59.749 55.000 0.00 0.00 33.11 3.36
1391 1454 5.365314 AGGGAGTCCTTGAGAAGATCAATAC 59.635 44.000 9.58 0.00 46.71 1.89
1683 1746 0.534877 TGAAGATGTGGCACTGCGTT 60.535 50.000 19.83 6.97 0.00 4.84
1691 1754 1.159713 TGGCACTGCGTTTCAGACAG 61.160 55.000 0.00 0.00 45.72 3.51
1713 1776 8.970691 ACAGTTTTGATGTTATTGCTATTGTC 57.029 30.769 0.00 0.00 0.00 3.18
1722 1785 9.110617 GATGTTATTGCTATTGTCAAATCGATG 57.889 33.333 0.00 0.00 0.00 3.84
1750 1813 8.419922 TGAATTGGCTATAAATGATATGCCAA 57.580 30.769 17.59 17.59 46.61 4.52
1753 1816 9.715121 AATTGGCTATAAATGATATGCCAAAAG 57.285 29.630 18.86 0.00 46.20 2.27
1766 1835 9.829507 TGATATGCCAAAAGAAGAAAAAGAAAA 57.170 25.926 0.00 0.00 0.00 2.29
1769 1838 6.472016 TGCCAAAAGAAGAAAAAGAAAAGGT 58.528 32.000 0.00 0.00 0.00 3.50
1825 1906 3.494626 CGAGCTGTTGCAGAAGAAACTTA 59.505 43.478 0.00 0.00 42.74 2.24
1878 1962 7.383102 ACTTGTTCTTGATGATGTATGGAAC 57.617 36.000 0.00 0.00 34.20 3.62
1927 2011 2.288666 TGAAGCCACTGTTGTGTTCTC 58.711 47.619 0.00 0.00 42.34 2.87
1935 2019 1.334869 CTGTTGTGTTCTCTTGGTGGC 59.665 52.381 0.00 0.00 0.00 5.01
1982 2066 1.799258 CGAAGCAAGCAAGTGGCCTT 61.799 55.000 3.32 0.00 46.50 4.35
1983 2067 1.247567 GAAGCAAGCAAGTGGCCTTA 58.752 50.000 3.32 0.00 46.50 2.69
2080 2164 4.843220 GCATTTAGCAATGGCATAGAGT 57.157 40.909 0.00 0.00 44.61 3.24
2133 2217 4.642885 CGTATTGTGAATAAATGTGGGGGT 59.357 41.667 0.00 0.00 0.00 4.95
2180 2264 2.419324 GTGGATTGCTGAGCTCAAAGAG 59.581 50.000 18.85 7.12 0.00 2.85
2484 2571 5.495640 CTCCAGGATAAGAAAGTGAAAGCT 58.504 41.667 0.00 0.00 0.00 3.74
2496 2583 6.758886 AGAAAGTGAAAGCTATATCTGGTTCG 59.241 38.462 0.00 0.00 0.00 3.95
2498 2585 3.182572 GTGAAAGCTATATCTGGTTCGCG 59.817 47.826 0.00 0.00 0.00 5.87
2499 2586 3.181479 TGAAAGCTATATCTGGTTCGCGT 60.181 43.478 5.77 0.00 0.00 6.01
2500 2587 4.037089 TGAAAGCTATATCTGGTTCGCGTA 59.963 41.667 5.77 0.00 0.00 4.42
2501 2588 4.785511 AAGCTATATCTGGTTCGCGTAT 57.214 40.909 5.77 0.00 0.00 3.06
2502 2589 4.785511 AGCTATATCTGGTTCGCGTATT 57.214 40.909 5.77 0.00 0.00 1.89
2503 2590 5.135508 AGCTATATCTGGTTCGCGTATTT 57.864 39.130 5.77 0.00 0.00 1.40
2504 2591 4.923871 AGCTATATCTGGTTCGCGTATTTG 59.076 41.667 5.77 0.00 0.00 2.32
2505 2592 4.684703 GCTATATCTGGTTCGCGTATTTGT 59.315 41.667 5.77 0.00 0.00 2.83
2506 2593 5.860182 GCTATATCTGGTTCGCGTATTTGTA 59.140 40.000 5.77 0.00 0.00 2.41
2507 2594 6.033619 GCTATATCTGGTTCGCGTATTTGTAG 59.966 42.308 5.77 0.86 0.00 2.74
2508 2595 2.264813 TCTGGTTCGCGTATTTGTAGC 58.735 47.619 5.77 0.00 0.00 3.58
2573 2672 7.506328 TGCACGACTTAGCTAGAGATATTAA 57.494 36.000 0.00 0.00 0.00 1.40
2587 2686 7.194607 AGAGATATTAACAATGAATGTGCCG 57.805 36.000 0.00 0.00 42.99 5.69
2598 2697 2.158769 TGAATGTGCCGCCATAGAAGAT 60.159 45.455 0.00 0.00 0.00 2.40
2694 2805 4.283978 TGTGGATTGTTTGATGGCAAATCT 59.716 37.500 7.14 0.00 45.01 2.40
2703 2814 2.093021 TGATGGCAAATCTCATGTCCGA 60.093 45.455 0.00 0.00 0.00 4.55
2718 2829 2.074576 GTCCGAACTTTGTTAGCTCCC 58.925 52.381 0.00 0.00 0.00 4.30
2724 2835 4.455877 CGAACTTTGTTAGCTCCCTCAAAT 59.544 41.667 0.00 0.00 31.08 2.32
2742 2868 8.850156 CCCTCAAATATACACCAGGATTTTAAG 58.150 37.037 0.00 0.00 0.00 1.85
2744 2870 9.125026 CTCAAATATACACCAGGATTTTAAGCT 57.875 33.333 0.00 0.00 0.00 3.74
2805 2956 1.171549 TGCGCATCAGTTTCAAGGCA 61.172 50.000 5.66 0.00 0.00 4.75
2808 2959 2.322161 CGCATCAGTTTCAAGGCAAAG 58.678 47.619 0.00 0.00 0.00 2.77
2862 3013 5.255687 TCCAATTGTGACATCAATGCTAGT 58.744 37.500 4.43 0.00 37.96 2.57
2874 3025 6.261826 ACATCAATGCTAGTTTGCTAGATTCC 59.738 38.462 5.89 0.00 45.77 3.01
2916 3067 3.243501 TGCAAACTTTGAGGCTCAATCAC 60.244 43.478 28.98 15.91 36.11 3.06
3227 3379 3.013921 GTGAGTTGTTGTTCTGTTGGGA 58.986 45.455 0.00 0.00 0.00 4.37
3229 3381 3.279434 GAGTTGTTGTTCTGTTGGGACT 58.721 45.455 0.00 0.00 0.00 3.85
3250 3411 5.200483 ACTTTGAAAGATTTGACAGGACCA 58.800 37.500 12.53 0.00 0.00 4.02
3340 3501 1.834896 AGTTGTACGGATATGGTGGCA 59.165 47.619 0.00 0.00 0.00 4.92
3341 3502 2.237643 AGTTGTACGGATATGGTGGCAA 59.762 45.455 0.00 0.00 0.00 4.52
3364 3525 5.815233 AGAAATACCACGATGGATGAGAT 57.185 39.130 10.46 0.00 40.96 2.75
3572 3733 4.292186 TCCCAAAGTTGAAGGAGATGAG 57.708 45.455 0.00 0.00 0.00 2.90
3709 3870 1.761449 TGCAAGTTTTCCACTGAGCA 58.239 45.000 0.00 0.00 42.23 4.26
3710 3871 1.677576 TGCAAGTTTTCCACTGAGCAG 59.322 47.619 0.00 0.00 40.57 4.24
3711 3872 1.601412 GCAAGTTTTCCACTGAGCAGC 60.601 52.381 0.00 0.00 37.33 5.25
3775 3970 5.694995 AGGTGGAGTGTTTATGGGATATTG 58.305 41.667 0.00 0.00 0.00 1.90
3812 4007 3.146847 ACCTTCGAACATCCCTTGAAAC 58.853 45.455 0.00 0.00 0.00 2.78
3904 4099 1.098050 CCTACTGGTGAATTGCTGCC 58.902 55.000 0.00 0.00 0.00 4.85
3993 4188 3.204827 CCAGCGGCGGAGGAATTG 61.205 66.667 9.78 0.00 0.00 2.32
4118 4313 3.066900 CACTTGTCTCCTATCCCACGTAG 59.933 52.174 0.00 0.00 0.00 3.51
4139 4451 3.774216 AGAAGAGGATTCAGAACTGGAGG 59.226 47.826 1.93 0.00 0.00 4.30
4221 4539 2.664081 CCCCTCCTGTGCTCACTCC 61.664 68.421 1.47 0.00 0.00 3.85
4253 4579 3.242969 TGACGATAACTGAGGTGCGTATC 60.243 47.826 0.39 0.00 31.99 2.24
4426 4760 1.224592 GCCGGATGGATGAAGTGGT 59.775 57.895 5.05 0.00 37.49 4.16
4432 4766 2.170166 GATGGATGAAGTGGTGCCAAA 58.830 47.619 0.00 0.00 31.53 3.28
4471 4805 2.945668 GACAAGAGAGTGCCACAAAAGT 59.054 45.455 0.00 0.00 0.00 2.66
4789 5123 0.760945 CAAGAGAGGGCGGGGTAGAT 60.761 60.000 0.00 0.00 0.00 1.98
5010 5344 6.040247 TGTTGTTGTTGTTGTTGTTGTTGTA 58.960 32.000 0.00 0.00 0.00 2.41
5011 5345 6.701841 TGTTGTTGTTGTTGTTGTTGTTGTAT 59.298 30.769 0.00 0.00 0.00 2.29
5012 5346 7.865889 TGTTGTTGTTGTTGTTGTTGTTGTATA 59.134 29.630 0.00 0.00 0.00 1.47
5014 5348 7.030165 TGTTGTTGTTGTTGTTGTTGTATAGG 58.970 34.615 0.00 0.00 0.00 2.57
5015 5349 7.094334 TGTTGTTGTTGTTGTTGTTGTATAGGA 60.094 33.333 0.00 0.00 0.00 2.94
5016 5350 7.575414 TGTTGTTGTTGTTGTTGTATAGGAT 57.425 32.000 0.00 0.00 0.00 3.24
5017 5351 7.644490 TGTTGTTGTTGTTGTTGTATAGGATC 58.356 34.615 0.00 0.00 0.00 3.36
5018 5352 7.500892 TGTTGTTGTTGTTGTTGTATAGGATCT 59.499 33.333 0.00 0.00 0.00 2.75
5019 5353 7.433708 TGTTGTTGTTGTTGTATAGGATCTG 57.566 36.000 0.00 0.00 0.00 2.90
5020 5354 6.995686 TGTTGTTGTTGTTGTATAGGATCTGT 59.004 34.615 0.00 0.00 0.00 3.41
5021 5355 7.500892 TGTTGTTGTTGTTGTATAGGATCTGTT 59.499 33.333 0.00 0.00 0.00 3.16
5022 5356 7.433708 TGTTGTTGTTGTATAGGATCTGTTG 57.566 36.000 0.00 0.00 0.00 3.33
5023 5357 7.220740 TGTTGTTGTTGTATAGGATCTGTTGA 58.779 34.615 0.00 0.00 0.00 3.18
5024 5358 7.882791 TGTTGTTGTTGTATAGGATCTGTTGAT 59.117 33.333 0.00 0.00 35.26 2.57
5025 5359 8.730680 GTTGTTGTTGTATAGGATCTGTTGATT 58.269 33.333 0.00 0.00 32.19 2.57
5026 5360 8.492673 TGTTGTTGTATAGGATCTGTTGATTC 57.507 34.615 0.00 0.00 32.19 2.52
5027 5361 8.321353 TGTTGTTGTATAGGATCTGTTGATTCT 58.679 33.333 0.00 0.00 41.26 2.40
5028 5362 8.607459 GTTGTTGTATAGGATCTGTTGATTCTG 58.393 37.037 0.00 0.00 38.87 3.02
5029 5363 8.078060 TGTTGTATAGGATCTGTTGATTCTGA 57.922 34.615 0.00 0.00 38.87 3.27
5052 5386 6.936900 TGAAAATCTTTTGATCTTCGGTCTCT 59.063 34.615 0.00 0.00 38.41 3.10
5070 5404 3.447586 TCTCTAGTGCCACATTCTGTACC 59.552 47.826 0.00 0.00 0.00 3.34
5098 5432 5.705609 TTTGGACAAGTATCTGCCTTTTC 57.294 39.130 0.00 0.00 0.00 2.29
5099 5433 4.365514 TGGACAAGTATCTGCCTTTTCA 57.634 40.909 0.00 0.00 0.00 2.69
5186 5527 3.956744 AGAGGTAAACTTCCAATCCAGC 58.043 45.455 0.00 0.00 0.00 4.85
5188 5529 1.743394 GGTAAACTTCCAATCCAGCGG 59.257 52.381 0.00 0.00 0.00 5.52
5195 5536 2.249535 CCAATCCAGCGGCATCTCG 61.250 63.158 1.45 0.00 0.00 4.04
5210 5551 2.201921 TCTCGAGTACTTCCTGCTGT 57.798 50.000 13.13 0.00 0.00 4.40
5216 5557 3.057456 CGAGTACTTCCTGCTGTTAGTGT 60.057 47.826 0.00 0.00 0.00 3.55
5217 5558 4.487019 GAGTACTTCCTGCTGTTAGTGTC 58.513 47.826 0.00 0.64 0.00 3.67
5218 5559 3.895656 AGTACTTCCTGCTGTTAGTGTCA 59.104 43.478 0.00 0.00 0.00 3.58
5219 5560 4.528596 AGTACTTCCTGCTGTTAGTGTCAT 59.471 41.667 0.00 0.00 0.00 3.06
5220 5561 5.715279 AGTACTTCCTGCTGTTAGTGTCATA 59.285 40.000 0.00 0.00 0.00 2.15
5221 5562 5.683876 ACTTCCTGCTGTTAGTGTCATAT 57.316 39.130 0.00 0.00 0.00 1.78
5222 5563 6.054860 ACTTCCTGCTGTTAGTGTCATATT 57.945 37.500 0.00 0.00 0.00 1.28
5223 5564 5.877012 ACTTCCTGCTGTTAGTGTCATATTG 59.123 40.000 0.00 0.00 0.00 1.90
5224 5565 4.191544 TCCTGCTGTTAGTGTCATATTGC 58.808 43.478 0.00 0.00 0.00 3.56
5225 5566 4.080919 TCCTGCTGTTAGTGTCATATTGCT 60.081 41.667 0.00 0.00 0.00 3.91
5226 5567 4.034858 CCTGCTGTTAGTGTCATATTGCTG 59.965 45.833 0.00 0.00 0.00 4.41
5227 5568 4.578871 TGCTGTTAGTGTCATATTGCTGT 58.421 39.130 0.00 0.00 0.00 4.40
5228 5569 4.392754 TGCTGTTAGTGTCATATTGCTGTG 59.607 41.667 0.00 0.00 0.00 3.66
5229 5570 4.728882 GCTGTTAGTGTCATATTGCTGTGC 60.729 45.833 0.00 0.00 0.00 4.57
5230 5571 3.689161 TGTTAGTGTCATATTGCTGTGCC 59.311 43.478 0.00 0.00 0.00 5.01
5231 5572 2.495155 AGTGTCATATTGCTGTGCCA 57.505 45.000 0.00 0.00 0.00 4.92
5232 5573 2.362736 AGTGTCATATTGCTGTGCCAG 58.637 47.619 0.00 0.00 34.12 4.85
5233 5574 2.086869 GTGTCATATTGCTGTGCCAGT 58.913 47.619 4.45 0.00 33.43 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.925506 TCCACTATAATGTTGGTCTTCGA 57.074 39.130 0.00 0.00 0.00 3.71
1 2 6.986817 AGATTCCACTATAATGTTGGTCTTCG 59.013 38.462 0.00 0.00 0.00 3.79
4 5 6.058183 GCAGATTCCACTATAATGTTGGTCT 58.942 40.000 0.00 0.00 0.00 3.85
8 9 7.308229 GGCTAAGCAGATTCCACTATAATGTTG 60.308 40.741 0.00 0.00 0.00 3.33
9 10 6.712547 GGCTAAGCAGATTCCACTATAATGTT 59.287 38.462 0.00 0.00 0.00 2.71
10 11 6.234177 GGCTAAGCAGATTCCACTATAATGT 58.766 40.000 0.00 0.00 0.00 2.71
11 12 5.645497 GGGCTAAGCAGATTCCACTATAATG 59.355 44.000 0.00 0.00 0.00 1.90
12 13 5.310594 TGGGCTAAGCAGATTCCACTATAAT 59.689 40.000 0.00 0.00 0.00 1.28
13 14 4.658435 TGGGCTAAGCAGATTCCACTATAA 59.342 41.667 0.00 0.00 0.00 0.98
14 15 4.231273 TGGGCTAAGCAGATTCCACTATA 58.769 43.478 0.00 0.00 0.00 1.31
15 16 3.048600 TGGGCTAAGCAGATTCCACTAT 58.951 45.455 0.00 0.00 0.00 2.12
16 17 2.477245 TGGGCTAAGCAGATTCCACTA 58.523 47.619 0.00 0.00 0.00 2.74
17 18 1.289160 TGGGCTAAGCAGATTCCACT 58.711 50.000 0.00 0.00 0.00 4.00
18 19 2.128771 TTGGGCTAAGCAGATTCCAC 57.871 50.000 0.00 0.00 0.00 4.02
19 20 2.897271 TTTGGGCTAAGCAGATTCCA 57.103 45.000 0.00 0.00 0.00 3.53
20 21 3.258123 TGTTTTTGGGCTAAGCAGATTCC 59.742 43.478 0.00 0.00 0.00 3.01
21 22 4.021981 AGTGTTTTTGGGCTAAGCAGATTC 60.022 41.667 0.00 0.00 0.00 2.52
22 23 3.897505 AGTGTTTTTGGGCTAAGCAGATT 59.102 39.130 0.00 0.00 0.00 2.40
23 24 3.256631 CAGTGTTTTTGGGCTAAGCAGAT 59.743 43.478 0.00 0.00 0.00 2.90
24 25 2.622942 CAGTGTTTTTGGGCTAAGCAGA 59.377 45.455 0.00 0.00 0.00 4.26
25 26 2.362077 ACAGTGTTTTTGGGCTAAGCAG 59.638 45.455 0.00 0.00 0.00 4.24
26 27 2.383855 ACAGTGTTTTTGGGCTAAGCA 58.616 42.857 0.00 0.00 0.00 3.91
27 28 4.037565 AGTTACAGTGTTTTTGGGCTAAGC 59.962 41.667 0.00 0.00 0.00 3.09
28 29 5.767816 AGTTACAGTGTTTTTGGGCTAAG 57.232 39.130 0.00 0.00 0.00 2.18
29 30 5.239963 GCTAGTTACAGTGTTTTTGGGCTAA 59.760 40.000 0.00 0.00 0.00 3.09
30 31 4.758165 GCTAGTTACAGTGTTTTTGGGCTA 59.242 41.667 0.00 0.00 0.00 3.93
31 32 3.568430 GCTAGTTACAGTGTTTTTGGGCT 59.432 43.478 0.00 0.00 0.00 5.19
32 33 3.608474 CGCTAGTTACAGTGTTTTTGGGC 60.608 47.826 0.00 0.00 0.00 5.36
33 34 3.608474 GCGCTAGTTACAGTGTTTTTGGG 60.608 47.826 0.00 0.00 0.00 4.12
34 35 3.250040 AGCGCTAGTTACAGTGTTTTTGG 59.750 43.478 8.99 0.00 0.00 3.28
35 36 4.468095 AGCGCTAGTTACAGTGTTTTTG 57.532 40.909 8.99 0.00 0.00 2.44
36 37 4.689345 CCTAGCGCTAGTTACAGTGTTTTT 59.311 41.667 35.61 1.33 0.00 1.94
37 38 4.243270 CCTAGCGCTAGTTACAGTGTTTT 58.757 43.478 35.61 1.73 0.00 2.43
38 39 3.846360 CCTAGCGCTAGTTACAGTGTTT 58.154 45.455 35.61 2.42 0.00 2.83
39 40 2.416972 GCCTAGCGCTAGTTACAGTGTT 60.417 50.000 35.61 2.88 0.00 3.32
40 41 1.134560 GCCTAGCGCTAGTTACAGTGT 59.865 52.381 35.61 0.00 0.00 3.55
41 42 1.134367 TGCCTAGCGCTAGTTACAGTG 59.866 52.381 35.61 22.48 38.78 3.66
42 43 1.471119 TGCCTAGCGCTAGTTACAGT 58.529 50.000 35.61 4.42 38.78 3.55
43 44 2.579207 TTGCCTAGCGCTAGTTACAG 57.421 50.000 35.61 23.74 38.78 2.74
44 45 2.997986 GTTTTGCCTAGCGCTAGTTACA 59.002 45.455 35.61 28.04 38.78 2.41
45 46 3.062234 CAGTTTTGCCTAGCGCTAGTTAC 59.938 47.826 35.61 26.17 38.78 2.50
46 47 3.056393 TCAGTTTTGCCTAGCGCTAGTTA 60.056 43.478 35.61 24.03 38.78 2.24
47 48 2.076863 CAGTTTTGCCTAGCGCTAGTT 58.923 47.619 35.61 14.15 38.78 2.24
48 49 1.275291 TCAGTTTTGCCTAGCGCTAGT 59.725 47.619 35.61 17.82 38.78 2.57
49 50 2.010145 TCAGTTTTGCCTAGCGCTAG 57.990 50.000 33.03 33.03 38.78 3.42
50 51 2.465860 TTCAGTTTTGCCTAGCGCTA 57.534 45.000 17.75 17.75 38.78 4.26
51 52 1.826385 ATTCAGTTTTGCCTAGCGCT 58.174 45.000 17.26 17.26 38.78 5.92
52 53 2.636768 AATTCAGTTTTGCCTAGCGC 57.363 45.000 0.00 0.00 38.31 5.92
53 54 3.244976 CCAAATTCAGTTTTGCCTAGCG 58.755 45.455 0.00 0.00 35.67 4.26
54 55 3.006859 ACCCAAATTCAGTTTTGCCTAGC 59.993 43.478 0.00 0.00 35.67 3.42
55 56 4.871933 ACCCAAATTCAGTTTTGCCTAG 57.128 40.909 0.00 0.00 35.67 3.02
56 57 5.390387 ACTACCCAAATTCAGTTTTGCCTA 58.610 37.500 0.00 0.00 35.67 3.93
57 58 4.223144 ACTACCCAAATTCAGTTTTGCCT 58.777 39.130 0.00 0.00 35.67 4.75
58 59 4.600692 ACTACCCAAATTCAGTTTTGCC 57.399 40.909 0.00 0.00 35.67 4.52
59 60 6.508777 TGTTACTACCCAAATTCAGTTTTGC 58.491 36.000 0.00 0.00 35.67 3.68
60 61 8.934507 TTTGTTACTACCCAAATTCAGTTTTG 57.065 30.769 0.00 0.00 36.55 2.44
61 62 9.541143 CATTTGTTACTACCCAAATTCAGTTTT 57.459 29.630 0.00 0.00 38.79 2.43
62 63 8.147704 CCATTTGTTACTACCCAAATTCAGTTT 58.852 33.333 0.00 0.00 38.79 2.66
63 64 7.666623 CCATTTGTTACTACCCAAATTCAGTT 58.333 34.615 0.00 0.00 38.79 3.16
64 65 6.295067 GCCATTTGTTACTACCCAAATTCAGT 60.295 38.462 0.00 0.00 38.79 3.41
65 66 6.071391 AGCCATTTGTTACTACCCAAATTCAG 60.071 38.462 0.00 0.00 38.79 3.02
66 67 5.777732 AGCCATTTGTTACTACCCAAATTCA 59.222 36.000 0.00 0.00 38.79 2.57
67 68 6.280855 AGCCATTTGTTACTACCCAAATTC 57.719 37.500 0.00 0.00 38.79 2.17
68 69 6.951778 ACTAGCCATTTGTTACTACCCAAATT 59.048 34.615 0.00 0.00 38.79 1.82
69 70 6.490492 ACTAGCCATTTGTTACTACCCAAAT 58.510 36.000 0.00 0.00 40.85 2.32
70 71 5.883180 ACTAGCCATTTGTTACTACCCAAA 58.117 37.500 0.00 0.00 35.25 3.28
71 72 5.249852 AGACTAGCCATTTGTTACTACCCAA 59.750 40.000 0.00 0.00 0.00 4.12
72 73 4.781087 AGACTAGCCATTTGTTACTACCCA 59.219 41.667 0.00 0.00 0.00 4.51
73 74 5.105064 TCAGACTAGCCATTTGTTACTACCC 60.105 44.000 0.00 0.00 0.00 3.69
74 75 5.974108 TCAGACTAGCCATTTGTTACTACC 58.026 41.667 0.00 0.00 0.00 3.18
75 76 6.018669 GCATCAGACTAGCCATTTGTTACTAC 60.019 42.308 0.00 0.00 0.00 2.73
76 77 6.049149 GCATCAGACTAGCCATTTGTTACTA 58.951 40.000 0.00 0.00 0.00 1.82
77 78 4.878397 GCATCAGACTAGCCATTTGTTACT 59.122 41.667 0.00 0.00 0.00 2.24
78 79 4.635765 TGCATCAGACTAGCCATTTGTTAC 59.364 41.667 0.00 0.00 0.00 2.50
79 80 4.842574 TGCATCAGACTAGCCATTTGTTA 58.157 39.130 0.00 0.00 0.00 2.41
80 81 3.689347 TGCATCAGACTAGCCATTTGTT 58.311 40.909 0.00 0.00 0.00 2.83
81 82 3.054875 TCTGCATCAGACTAGCCATTTGT 60.055 43.478 0.00 0.00 35.39 2.83
82 83 3.538591 TCTGCATCAGACTAGCCATTTG 58.461 45.455 0.00 0.00 35.39 2.32
83 84 3.920231 TCTGCATCAGACTAGCCATTT 57.080 42.857 0.00 0.00 35.39 2.32
84 85 3.741249 CATCTGCATCAGACTAGCCATT 58.259 45.455 0.00 0.00 43.63 3.16
85 86 2.550423 GCATCTGCATCAGACTAGCCAT 60.550 50.000 0.00 0.00 43.63 4.40
86 87 1.202615 GCATCTGCATCAGACTAGCCA 60.203 52.381 0.00 0.00 43.63 4.75
87 88 1.070445 AGCATCTGCATCAGACTAGCC 59.930 52.381 4.79 0.00 43.63 3.93
88 89 2.406130 GAGCATCTGCATCAGACTAGC 58.594 52.381 4.79 4.54 43.63 3.42
105 106 4.392921 TCTGTTGGTAGATGCTTAGAGC 57.607 45.455 0.00 0.00 42.82 4.09
106 107 6.091441 GTGTTTCTGTTGGTAGATGCTTAGAG 59.909 42.308 0.00 0.00 0.00 2.43
107 108 5.932303 GTGTTTCTGTTGGTAGATGCTTAGA 59.068 40.000 0.00 0.00 0.00 2.10
108 109 5.122396 GGTGTTTCTGTTGGTAGATGCTTAG 59.878 44.000 0.00 0.00 0.00 2.18
109 110 5.001232 GGTGTTTCTGTTGGTAGATGCTTA 58.999 41.667 0.00 0.00 0.00 3.09
110 111 3.821033 GGTGTTTCTGTTGGTAGATGCTT 59.179 43.478 0.00 0.00 0.00 3.91
111 112 3.073062 AGGTGTTTCTGTTGGTAGATGCT 59.927 43.478 0.00 0.00 0.00 3.79
112 113 3.412386 AGGTGTTTCTGTTGGTAGATGC 58.588 45.455 0.00 0.00 0.00 3.91
113 114 4.641396 TGAGGTGTTTCTGTTGGTAGATG 58.359 43.478 0.00 0.00 0.00 2.90
114 115 4.804261 GCTGAGGTGTTTCTGTTGGTAGAT 60.804 45.833 0.00 0.00 0.00 1.98
115 116 3.494398 GCTGAGGTGTTTCTGTTGGTAGA 60.494 47.826 0.00 0.00 0.00 2.59
116 117 2.808543 GCTGAGGTGTTTCTGTTGGTAG 59.191 50.000 0.00 0.00 0.00 3.18
117 118 2.171659 TGCTGAGGTGTTTCTGTTGGTA 59.828 45.455 0.00 0.00 0.00 3.25
118 119 1.064758 TGCTGAGGTGTTTCTGTTGGT 60.065 47.619 0.00 0.00 0.00 3.67
119 120 1.679139 TGCTGAGGTGTTTCTGTTGG 58.321 50.000 0.00 0.00 0.00 3.77
120 121 3.996150 ATTGCTGAGGTGTTTCTGTTG 57.004 42.857 0.00 0.00 0.00 3.33
121 122 6.655078 AAATATTGCTGAGGTGTTTCTGTT 57.345 33.333 0.00 0.00 0.00 3.16
122 123 6.655078 AAAATATTGCTGAGGTGTTTCTGT 57.345 33.333 0.00 0.00 0.00 3.41
123 124 9.294030 GATAAAAATATTGCTGAGGTGTTTCTG 57.706 33.333 0.00 0.00 0.00 3.02
124 125 9.247861 AGATAAAAATATTGCTGAGGTGTTTCT 57.752 29.630 0.00 0.00 0.00 2.52
125 126 9.860898 AAGATAAAAATATTGCTGAGGTGTTTC 57.139 29.630 0.00 0.00 0.00 2.78
127 128 9.860898 GAAAGATAAAAATATTGCTGAGGTGTT 57.139 29.630 0.00 0.00 0.00 3.32
128 129 9.247861 AGAAAGATAAAAATATTGCTGAGGTGT 57.752 29.630 0.00 0.00 0.00 4.16
131 132 9.741647 GGAAGAAAGATAAAAATATTGCTGAGG 57.258 33.333 0.00 0.00 0.00 3.86
143 144 9.533831 AGCCTCATAAAAGGAAGAAAGATAAAA 57.466 29.630 0.00 0.00 38.87 1.52
144 145 9.178758 GAGCCTCATAAAAGGAAGAAAGATAAA 57.821 33.333 0.00 0.00 38.87 1.40
145 146 8.328758 TGAGCCTCATAAAAGGAAGAAAGATAA 58.671 33.333 0.00 0.00 38.87 1.75
146 147 7.861629 TGAGCCTCATAAAAGGAAGAAAGATA 58.138 34.615 0.00 0.00 38.87 1.98
147 148 6.725364 TGAGCCTCATAAAAGGAAGAAAGAT 58.275 36.000 0.00 0.00 38.87 2.40
148 149 6.126863 TGAGCCTCATAAAAGGAAGAAAGA 57.873 37.500 0.00 0.00 38.87 2.52
149 150 6.679884 GCATGAGCCTCATAAAAGGAAGAAAG 60.680 42.308 6.94 0.00 38.87 2.62
150 151 5.126061 GCATGAGCCTCATAAAAGGAAGAAA 59.874 40.000 6.94 0.00 38.87 2.52
151 152 4.641989 GCATGAGCCTCATAAAAGGAAGAA 59.358 41.667 6.94 0.00 38.87 2.52
152 153 4.202441 GCATGAGCCTCATAAAAGGAAGA 58.798 43.478 6.94 0.00 38.87 2.87
153 154 4.564940 GCATGAGCCTCATAAAAGGAAG 57.435 45.455 6.94 0.00 38.87 3.46
167 168 5.823045 AGGTAAACATTACTAAGGCATGAGC 59.177 40.000 0.00 0.00 41.10 4.26
168 169 7.225538 CAGAGGTAAACATTACTAAGGCATGAG 59.774 40.741 0.00 0.00 0.00 2.90
169 170 7.047891 CAGAGGTAAACATTACTAAGGCATGA 58.952 38.462 0.00 0.00 0.00 3.07
170 171 6.238484 GCAGAGGTAAACATTACTAAGGCATG 60.238 42.308 0.00 0.00 0.00 4.06
171 172 5.823045 GCAGAGGTAAACATTACTAAGGCAT 59.177 40.000 0.80 0.00 0.00 4.40
172 173 5.183228 GCAGAGGTAAACATTACTAAGGCA 58.817 41.667 0.80 0.00 0.00 4.75
173 174 5.064834 GTGCAGAGGTAAACATTACTAAGGC 59.935 44.000 0.00 0.00 0.00 4.35
174 175 5.585047 GGTGCAGAGGTAAACATTACTAAGG 59.415 44.000 0.00 0.00 0.00 2.69
175 176 6.170506 TGGTGCAGAGGTAAACATTACTAAG 58.829 40.000 0.00 0.00 0.00 2.18
176 177 6.116711 TGGTGCAGAGGTAAACATTACTAA 57.883 37.500 0.00 0.00 0.00 2.24
177 178 5.748670 TGGTGCAGAGGTAAACATTACTA 57.251 39.130 0.00 0.00 0.00 1.82
178 179 4.634012 TGGTGCAGAGGTAAACATTACT 57.366 40.909 0.00 0.00 0.00 2.24
179 180 5.640732 CATTGGTGCAGAGGTAAACATTAC 58.359 41.667 0.00 0.00 0.00 1.89
180 181 5.895636 CATTGGTGCAGAGGTAAACATTA 57.104 39.130 0.00 0.00 0.00 1.90
181 182 4.789012 CATTGGTGCAGAGGTAAACATT 57.211 40.909 0.00 0.00 0.00 2.71
202 203 2.235016 GCGATGGCATGCACATTGC 61.235 57.895 29.57 29.57 45.42 3.56
203 204 0.179121 AAGCGATGGCATGCACATTG 60.179 50.000 21.36 22.05 43.41 2.82
204 205 0.179121 CAAGCGATGGCATGCACATT 60.179 50.000 21.36 3.73 43.41 2.71
205 206 1.435925 CAAGCGATGGCATGCACAT 59.564 52.632 21.36 19.41 43.41 3.21
206 207 2.879168 CAAGCGATGGCATGCACA 59.121 55.556 21.36 15.35 43.41 4.57
210 211 2.187707 GTAAAAGCAAGCGATGGCATG 58.812 47.619 3.81 0.75 43.41 4.06
211 212 1.818060 TGTAAAAGCAAGCGATGGCAT 59.182 42.857 1.39 0.00 43.41 4.40
212 213 1.242989 TGTAAAAGCAAGCGATGGCA 58.757 45.000 1.39 0.00 43.41 4.92
213 214 2.187707 CATGTAAAAGCAAGCGATGGC 58.812 47.619 0.00 0.00 40.37 4.40
214 215 2.187707 GCATGTAAAAGCAAGCGATGG 58.812 47.619 0.00 0.00 0.00 3.51
215 216 2.187707 GGCATGTAAAAGCAAGCGATG 58.812 47.619 0.00 0.00 34.33 3.84
216 217 1.202177 CGGCATGTAAAAGCAAGCGAT 60.202 47.619 0.00 0.00 34.33 4.58
217 218 0.167908 CGGCATGTAAAAGCAAGCGA 59.832 50.000 0.00 0.00 34.33 4.93
218 219 0.109781 ACGGCATGTAAAAGCAAGCG 60.110 50.000 0.00 0.00 34.33 4.68
219 220 1.985684 GAACGGCATGTAAAAGCAAGC 59.014 47.619 0.00 0.00 32.95 4.01
220 221 2.241722 CGAACGGCATGTAAAAGCAAG 58.758 47.619 0.00 0.00 0.00 4.01
221 222 1.664588 GCGAACGGCATGTAAAAGCAA 60.665 47.619 0.00 0.00 42.87 3.91
222 223 0.109964 GCGAACGGCATGTAAAAGCA 60.110 50.000 0.00 0.00 42.87 3.91
223 224 0.796870 GGCGAACGGCATGTAAAAGC 60.797 55.000 15.29 0.00 46.16 3.51
224 225 0.802494 AGGCGAACGGCATGTAAAAG 59.198 50.000 21.28 0.00 46.16 2.27
225 226 1.733360 GTAGGCGAACGGCATGTAAAA 59.267 47.619 21.28 0.00 46.16 1.52
226 227 1.337917 TGTAGGCGAACGGCATGTAAA 60.338 47.619 21.28 0.00 46.16 2.01
227 228 0.246910 TGTAGGCGAACGGCATGTAA 59.753 50.000 21.28 1.38 46.16 2.41
228 229 0.462375 ATGTAGGCGAACGGCATGTA 59.538 50.000 21.28 4.13 46.16 2.29
229 230 0.462375 TATGTAGGCGAACGGCATGT 59.538 50.000 21.28 5.07 46.16 3.21
230 231 0.859232 GTATGTAGGCGAACGGCATG 59.141 55.000 21.28 0.00 46.16 4.06
231 232 0.596600 CGTATGTAGGCGAACGGCAT 60.597 55.000 21.28 9.78 46.16 4.40
232 233 1.226745 CGTATGTAGGCGAACGGCA 60.227 57.895 21.28 6.24 46.16 5.69
233 234 2.583164 GCGTATGTAGGCGAACGGC 61.583 63.158 12.58 12.58 42.51 5.68
234 235 1.947642 GGCGTATGTAGGCGAACGG 60.948 63.158 0.00 0.00 37.92 4.44
235 236 0.308684 TAGGCGTATGTAGGCGAACG 59.691 55.000 0.00 0.00 37.92 3.95
236 237 1.763634 GTAGGCGTATGTAGGCGAAC 58.236 55.000 0.00 0.00 37.92 3.95
237 238 0.308684 CGTAGGCGTATGTAGGCGAA 59.691 55.000 0.00 0.00 37.92 4.70
238 239 1.944035 CGTAGGCGTATGTAGGCGA 59.056 57.895 0.00 0.00 37.92 5.54
239 240 1.728426 GCGTAGGCGTATGTAGGCG 60.728 63.158 7.43 0.00 40.81 5.52
240 241 4.240049 GCGTAGGCGTATGTAGGC 57.760 61.111 7.43 0.00 40.81 3.93
251 252 0.672401 ACATGTTGAACCGGCGTAGG 60.672 55.000 6.01 0.00 37.30 3.18
252 253 1.999048 TACATGTTGAACCGGCGTAG 58.001 50.000 2.30 0.00 0.00 3.51
253 254 2.676632 ATACATGTTGAACCGGCGTA 57.323 45.000 2.30 0.00 0.00 4.42
254 255 2.676632 TATACATGTTGAACCGGCGT 57.323 45.000 2.30 0.00 0.00 5.68
255 256 3.362596 CGATTATACATGTTGAACCGGCG 60.363 47.826 2.30 0.00 0.00 6.46
256 257 3.606153 GCGATTATACATGTTGAACCGGC 60.606 47.826 2.30 0.00 0.00 6.13
257 258 3.558006 TGCGATTATACATGTTGAACCGG 59.442 43.478 2.30 0.00 0.00 5.28
258 259 4.506288 TCTGCGATTATACATGTTGAACCG 59.494 41.667 2.30 2.47 0.00 4.44
259 260 5.293324 TGTCTGCGATTATACATGTTGAACC 59.707 40.000 2.30 0.00 0.00 3.62
260 261 6.255670 TCTGTCTGCGATTATACATGTTGAAC 59.744 38.462 2.30 0.00 0.00 3.18
261 262 6.337356 TCTGTCTGCGATTATACATGTTGAA 58.663 36.000 2.30 0.00 0.00 2.69
262 263 5.901552 TCTGTCTGCGATTATACATGTTGA 58.098 37.500 2.30 0.00 0.00 3.18
263 264 6.256539 ACTTCTGTCTGCGATTATACATGTTG 59.743 38.462 2.30 0.00 0.00 3.33
264 265 6.341316 ACTTCTGTCTGCGATTATACATGTT 58.659 36.000 2.30 0.00 0.00 2.71
265 266 5.907207 ACTTCTGTCTGCGATTATACATGT 58.093 37.500 2.69 2.69 0.00 3.21
266 267 9.626045 TTATACTTCTGTCTGCGATTATACATG 57.374 33.333 0.00 0.00 0.00 3.21
273 274 8.982685 CATGTTATTATACTTCTGTCTGCGATT 58.017 33.333 0.00 0.00 0.00 3.34
274 275 7.600375 CCATGTTATTATACTTCTGTCTGCGAT 59.400 37.037 0.00 0.00 0.00 4.58
275 276 6.923508 CCATGTTATTATACTTCTGTCTGCGA 59.076 38.462 0.00 0.00 0.00 5.10
276 277 6.146184 CCCATGTTATTATACTTCTGTCTGCG 59.854 42.308 0.00 0.00 0.00 5.18
277 278 6.073003 GCCCATGTTATTATACTTCTGTCTGC 60.073 42.308 0.00 0.00 0.00 4.26
278 279 6.992123 TGCCCATGTTATTATACTTCTGTCTG 59.008 38.462 0.00 0.00 0.00 3.51
279 280 7.136822 TGCCCATGTTATTATACTTCTGTCT 57.863 36.000 0.00 0.00 0.00 3.41
280 281 7.573843 GCATGCCCATGTTATTATACTTCTGTC 60.574 40.741 6.36 0.00 40.80 3.51
281 282 6.207417 GCATGCCCATGTTATTATACTTCTGT 59.793 38.462 6.36 0.00 40.80 3.41
282 283 6.615088 GCATGCCCATGTTATTATACTTCTG 58.385 40.000 6.36 0.00 40.80 3.02
283 284 5.412594 CGCATGCCCATGTTATTATACTTCT 59.587 40.000 13.15 0.00 40.80 2.85
284 285 5.391950 CCGCATGCCCATGTTATTATACTTC 60.392 44.000 13.15 0.00 40.80 3.01
285 286 4.458989 CCGCATGCCCATGTTATTATACTT 59.541 41.667 13.15 0.00 40.80 2.24
286 287 4.009675 CCGCATGCCCATGTTATTATACT 58.990 43.478 13.15 0.00 40.80 2.12
287 288 3.128589 CCCGCATGCCCATGTTATTATAC 59.871 47.826 13.15 0.00 40.80 1.47
288 289 3.245087 ACCCGCATGCCCATGTTATTATA 60.245 43.478 13.15 0.00 40.80 0.98
289 290 2.170166 CCCGCATGCCCATGTTATTAT 58.830 47.619 13.15 0.00 40.80 1.28
290 291 1.133637 ACCCGCATGCCCATGTTATTA 60.134 47.619 13.15 0.00 40.80 0.98
291 292 0.396974 ACCCGCATGCCCATGTTATT 60.397 50.000 13.15 0.00 40.80 1.40
292 293 0.396974 AACCCGCATGCCCATGTTAT 60.397 50.000 13.15 0.00 40.80 1.89
293 294 1.000270 AACCCGCATGCCCATGTTA 60.000 52.632 13.15 0.00 40.80 2.41
294 295 2.283821 AACCCGCATGCCCATGTT 60.284 55.556 13.15 7.49 40.80 2.71
295 296 2.755469 GAACCCGCATGCCCATGT 60.755 61.111 13.15 0.91 40.80 3.21
296 297 2.440796 AGAACCCGCATGCCCATG 60.441 61.111 13.15 3.93 41.60 3.66
297 298 2.124151 GAGAACCCGCATGCCCAT 60.124 61.111 13.15 0.00 0.00 4.00
298 299 4.424711 GGAGAACCCGCATGCCCA 62.425 66.667 13.15 0.00 0.00 5.36
323 324 2.751259 TGTGTATGTACTCACGGTCTCC 59.249 50.000 0.00 0.00 37.38 3.71
325 326 2.163815 GCTGTGTATGTACTCACGGTCT 59.836 50.000 18.63 0.00 41.37 3.85
339 340 3.833732 TGTAAAACCAATGGGCTGTGTA 58.166 40.909 3.55 0.00 37.90 2.90
341 342 3.006752 ACATGTAAAACCAATGGGCTGTG 59.993 43.478 3.55 0.00 37.90 3.66
342 343 3.006752 CACATGTAAAACCAATGGGCTGT 59.993 43.478 3.55 0.00 37.90 4.40
343 344 3.587923 CACATGTAAAACCAATGGGCTG 58.412 45.455 3.55 0.00 37.90 4.85
344 345 2.028203 GCACATGTAAAACCAATGGGCT 60.028 45.455 3.55 0.00 38.51 5.19
346 347 3.257873 TGAGCACATGTAAAACCAATGGG 59.742 43.478 3.55 0.00 41.29 4.00
347 348 4.487948 CTGAGCACATGTAAAACCAATGG 58.512 43.478 0.00 0.00 0.00 3.16
348 349 3.922240 GCTGAGCACATGTAAAACCAATG 59.078 43.478 0.00 0.00 0.00 2.82
349 350 3.828451 AGCTGAGCACATGTAAAACCAAT 59.172 39.130 7.39 0.00 0.00 3.16
350 351 3.221771 AGCTGAGCACATGTAAAACCAA 58.778 40.909 7.39 0.00 0.00 3.67
353 354 3.250762 TGTGAGCTGAGCACATGTAAAAC 59.749 43.478 8.00 0.00 41.00 2.43
371 372 3.118992 ACGAAAGAGAGCATAGCATGTGA 60.119 43.478 0.00 0.00 0.00 3.58
398 399 8.976355 GAAACCAGTTTAGCAGCGTTGATACG 62.976 46.154 2.38 0.00 40.73 3.06
399 400 3.000727 ACCAGTTTAGCAGCGTTGATAC 58.999 45.455 2.38 0.00 0.00 2.24
416 417 6.373779 CAAGTACATAGCAAGTTGAAACCAG 58.626 40.000 7.16 0.00 0.00 4.00
466 476 9.596677 CGTACACTCTGTTTAGTATAGCTATTC 57.403 37.037 12.39 6.92 0.00 1.75
569 583 4.812626 ACTCCCAACGTACACTTTGTTTAG 59.187 41.667 0.00 0.00 0.00 1.85
610 631 2.303660 ATTGGTCCTATTGGAGGGGT 57.696 50.000 0.00 0.00 46.70 4.95
614 635 5.600484 ACTGAGAGTATTGGTCCTATTGGAG 59.400 44.000 0.00 0.00 44.16 3.86
618 645 7.549488 CGAAAAACTGAGAGTATTGGTCCTATT 59.451 37.037 0.00 0.00 0.00 1.73
619 646 7.042335 CGAAAAACTGAGAGTATTGGTCCTAT 58.958 38.462 0.00 0.00 0.00 2.57
620 647 6.395629 CGAAAAACTGAGAGTATTGGTCCTA 58.604 40.000 0.00 0.00 0.00 2.94
621 648 5.238583 CGAAAAACTGAGAGTATTGGTCCT 58.761 41.667 0.00 0.00 0.00 3.85
622 649 4.392138 CCGAAAAACTGAGAGTATTGGTCC 59.608 45.833 0.00 0.00 0.00 4.46
623 650 4.392138 CCCGAAAAACTGAGAGTATTGGTC 59.608 45.833 0.00 0.00 0.00 4.02
624 651 4.041198 TCCCGAAAAACTGAGAGTATTGGT 59.959 41.667 0.00 0.00 0.00 3.67
625 652 4.575885 TCCCGAAAAACTGAGAGTATTGG 58.424 43.478 0.00 0.00 0.00 3.16
626 653 4.631813 CCTCCCGAAAAACTGAGAGTATTG 59.368 45.833 0.00 0.00 0.00 1.90
632 659 3.644738 ACTTACCTCCCGAAAAACTGAGA 59.355 43.478 0.00 0.00 0.00 3.27
643 670 2.166664 CCTTCTCTGAACTTACCTCCCG 59.833 54.545 0.00 0.00 0.00 5.14
749 776 2.917713 ACAATTGGAATGGGGTGCTA 57.082 45.000 10.83 0.00 0.00 3.49
766 793 1.949847 GCTCTCTCGCCAAGGCTACA 61.950 60.000 9.73 0.00 39.32 2.74
770 797 2.202864 GAGCTCTCTCGCCAAGGC 60.203 66.667 6.43 0.00 37.85 4.35
803 830 4.882427 AGCAGAGATACTACTTCTTGCGTA 59.118 41.667 0.00 0.00 34.90 4.42
804 831 3.697045 AGCAGAGATACTACTTCTTGCGT 59.303 43.478 0.00 0.00 34.90 5.24
808 835 7.363443 GGTGAAAGAGCAGAGATACTACTTCTT 60.363 40.741 0.00 0.00 0.00 2.52
811 838 5.717178 TGGTGAAAGAGCAGAGATACTACTT 59.283 40.000 0.00 0.00 0.00 2.24
812 839 5.265191 TGGTGAAAGAGCAGAGATACTACT 58.735 41.667 0.00 0.00 0.00 2.57
814 841 6.798427 ATTGGTGAAAGAGCAGAGATACTA 57.202 37.500 0.00 0.00 32.41 1.82
939 982 2.260822 TGAAACAAGGGGAGAGAGAGG 58.739 52.381 0.00 0.00 0.00 3.69
940 983 5.609423 CATATGAAACAAGGGGAGAGAGAG 58.391 45.833 0.00 0.00 0.00 3.20
1056 1116 1.106944 TCACAGTCTGGACGAGTGCA 61.107 55.000 17.73 0.00 45.20 4.57
1059 1119 1.179814 GGGTCACAGTCTGGACGAGT 61.180 60.000 4.53 0.00 34.87 4.18
1185 1248 2.756907 AGCTTCTCCATCCAGCTCTTA 58.243 47.619 0.00 0.00 39.87 2.10
1297 1360 1.136305 GATGTAGCCGAGTACCTTGCA 59.864 52.381 0.00 0.00 0.00 4.08
1391 1454 5.230942 ACTTGTTCATCTCCTTGACTAACG 58.769 41.667 0.00 0.00 0.00 3.18
1618 1681 3.575256 TGGTCGTTGTACACCATCTTAGT 59.425 43.478 0.00 0.00 37.78 2.24
1683 1746 7.275888 AGCAATAACATCAAAACTGTCTGAA 57.724 32.000 0.00 0.00 0.00 3.02
1713 1776 9.681692 TTTATAGCCAATTCAATCATCGATTTG 57.318 29.630 0.00 0.00 28.87 2.32
1722 1785 9.525409 GGCATATCATTTATAGCCAATTCAATC 57.475 33.333 0.00 0.00 35.80 2.67
1744 1807 7.112122 ACCTTTTCTTTTTCTTCTTTTGGCAT 58.888 30.769 0.00 0.00 0.00 4.40
1750 1813 9.431887 GGTTGTAACCTTTTCTTTTTCTTCTTT 57.568 29.630 6.54 0.00 45.75 2.52
1769 1838 2.643801 AGGTACCAATTCCCGGTTGTAA 59.356 45.455 15.94 0.00 37.99 2.41
1775 1844 0.909623 AGACAGGTACCAATTCCCGG 59.090 55.000 15.94 0.00 0.00 5.73
1776 1845 1.406887 CCAGACAGGTACCAATTCCCG 60.407 57.143 15.94 1.66 0.00 5.14
1825 1906 2.214376 TTCCGGCCAATGACTTCATT 57.786 45.000 2.24 0.00 46.62 2.57
1878 1962 2.103373 TCCCACATCCTCTTCTCTTCG 58.897 52.381 0.00 0.00 0.00 3.79
1935 2019 3.517901 TGACCACTATAACACTTCCTGGG 59.482 47.826 0.00 0.00 0.00 4.45
1982 2066 6.427441 TGGGGATTAACTGTGCACATTATTA 58.573 36.000 22.00 15.86 0.00 0.98
1983 2067 5.268387 TGGGGATTAACTGTGCACATTATT 58.732 37.500 22.00 16.87 0.00 1.40
2073 2157 6.701145 TCTAACTCTGCTTGGTACTCTATG 57.299 41.667 0.00 0.00 0.00 2.23
2080 2164 4.504340 GGTGGTTTCTAACTCTGCTTGGTA 60.504 45.833 0.00 0.00 0.00 3.25
2180 2264 3.010420 GCCTTCCATTCCTGTACTTGTC 58.990 50.000 0.00 0.00 0.00 3.18
2311 2395 3.960102 TCCTTCTGGAAAAGTGCACAAAT 59.040 39.130 21.04 3.52 39.87 2.32
2328 2412 5.862845 TCCTTCTGCATCTCATAATCCTTC 58.137 41.667 0.00 0.00 0.00 3.46
2466 2550 9.213799 CCAGATATAGCTTTCACTTTCTTATCC 57.786 37.037 0.00 0.00 0.00 2.59
2484 2571 5.860182 GCTACAAATACGCGAACCAGATATA 59.140 40.000 15.93 0.00 0.00 0.86
2496 2583 6.308041 TCTCATATTCATCGCTACAAATACGC 59.692 38.462 0.00 0.00 0.00 4.42
2498 2585 8.520835 TGTCTCATATTCATCGCTACAAATAC 57.479 34.615 0.00 0.00 0.00 1.89
2499 2586 8.360390 ACTGTCTCATATTCATCGCTACAAATA 58.640 33.333 0.00 0.00 0.00 1.40
2500 2587 7.212976 ACTGTCTCATATTCATCGCTACAAAT 58.787 34.615 0.00 0.00 0.00 2.32
2501 2588 6.573434 ACTGTCTCATATTCATCGCTACAAA 58.427 36.000 0.00 0.00 0.00 2.83
2502 2589 6.149129 ACTGTCTCATATTCATCGCTACAA 57.851 37.500 0.00 0.00 0.00 2.41
2503 2590 5.774498 ACTGTCTCATATTCATCGCTACA 57.226 39.130 0.00 0.00 0.00 2.74
2504 2591 6.904498 ACTACTGTCTCATATTCATCGCTAC 58.096 40.000 0.00 0.00 0.00 3.58
2505 2592 8.669243 CATACTACTGTCTCATATTCATCGCTA 58.331 37.037 0.00 0.00 0.00 4.26
2506 2593 7.175816 ACATACTACTGTCTCATATTCATCGCT 59.824 37.037 0.00 0.00 0.00 4.93
2507 2594 7.309177 ACATACTACTGTCTCATATTCATCGC 58.691 38.462 0.00 0.00 0.00 4.58
2573 2672 1.677576 CTATGGCGGCACATTCATTGT 59.322 47.619 16.34 0.00 39.91 2.71
2587 2686 6.913170 TCTGTTCAAACAAATCTTCTATGGC 58.087 36.000 0.00 0.00 38.66 4.40
2598 2697 4.081198 ACCAATGCCTTCTGTTCAAACAAA 60.081 37.500 0.00 0.00 38.66 2.83
2694 2805 3.994392 GAGCTAACAAAGTTCGGACATGA 59.006 43.478 0.00 0.00 0.00 3.07
2703 2814 8.107095 TGTATATTTGAGGGAGCTAACAAAGTT 58.893 33.333 10.91 0.00 36.07 2.66
2718 2829 9.125026 AGCTTAAAATCCTGGTGTATATTTGAG 57.875 33.333 0.00 0.00 0.00 3.02
2724 2835 5.822519 CAGCAGCTTAAAATCCTGGTGTATA 59.177 40.000 10.02 0.00 45.19 1.47
2742 2868 1.315690 ATGATACATGTGGCAGCAGC 58.684 50.000 9.11 0.00 41.10 5.25
2744 2870 2.871633 CGTAATGATACATGTGGCAGCA 59.128 45.455 9.11 0.00 32.02 4.41
2805 2956 8.303876 AGATACCGTAAATGTTTTGCATTCTTT 58.696 29.630 0.00 0.00 46.29 2.52
2808 2959 7.753132 TCAAGATACCGTAAATGTTTTGCATTC 59.247 33.333 0.00 0.00 46.29 2.67
2862 3013 7.112122 ACAACAGACATATGGAATCTAGCAAA 58.888 34.615 7.80 0.00 0.00 3.68
2874 3025 7.552458 TTGCAGGTTATACAACAGACATATG 57.448 36.000 0.00 0.00 36.29 1.78
2916 3067 0.392998 ATTGCCGTAGTCCCTTGCAG 60.393 55.000 0.00 0.00 0.00 4.41
3004 3155 0.392998 ATGTTTCGAGGCATCCGCTT 60.393 50.000 0.00 0.00 38.60 4.68
3227 3379 5.200483 TGGTCCTGTCAAATCTTTCAAAGT 58.800 37.500 0.00 0.00 0.00 2.66
3229 3381 6.537453 TTTGGTCCTGTCAAATCTTTCAAA 57.463 33.333 0.00 0.00 0.00 2.69
3250 3411 6.664816 TCTTCCTCATTACATGCCTCATTTTT 59.335 34.615 0.00 0.00 0.00 1.94
3340 3501 5.989477 TCTCATCCATCGTGGTATTTCTTT 58.011 37.500 4.33 0.00 39.03 2.52
3341 3502 5.614324 TCTCATCCATCGTGGTATTTCTT 57.386 39.130 4.33 0.00 39.03 2.52
3364 3525 5.435686 AAGCACTGAAACATATGAGGGTA 57.564 39.130 10.38 0.00 0.00 3.69
3572 3733 3.028130 AGACTAGGTAGCTCTTCCAAGC 58.972 50.000 0.00 0.00 42.82 4.01
3670 3831 0.107459 AGCTTAGGGCAGCAGCTAAC 60.107 55.000 3.15 0.00 42.25 2.34
3672 3833 0.107508 CAAGCTTAGGGCAGCAGCTA 60.108 55.000 5.44 0.00 43.28 3.32
3709 3870 1.128188 AGGTCTTTGAGAACGGGGCT 61.128 55.000 0.00 0.00 36.93 5.19
3710 3871 0.955919 CAGGTCTTTGAGAACGGGGC 60.956 60.000 0.00 0.00 36.93 5.80
3711 3872 0.685097 TCAGGTCTTTGAGAACGGGG 59.315 55.000 0.00 0.00 36.93 5.73
3789 3984 3.053831 TCAAGGGATGTTCGAAGGTTC 57.946 47.619 0.00 0.00 0.00 3.62
3790 3985 3.502123 TTCAAGGGATGTTCGAAGGTT 57.498 42.857 0.00 0.00 0.00 3.50
3791 3986 3.146847 GTTTCAAGGGATGTTCGAAGGT 58.853 45.455 0.00 0.00 0.00 3.50
3792 3987 3.412386 AGTTTCAAGGGATGTTCGAAGG 58.588 45.455 0.00 0.00 0.00 3.46
3793 3988 5.215160 CAAAGTTTCAAGGGATGTTCGAAG 58.785 41.667 0.00 0.00 0.00 3.79
3794 3989 4.642885 ACAAAGTTTCAAGGGATGTTCGAA 59.357 37.500 0.00 0.00 0.00 3.71
3795 3990 4.036262 CACAAAGTTTCAAGGGATGTTCGA 59.964 41.667 0.00 0.00 0.00 3.71
3812 4007 2.167075 GGGGAGCATTGAATCCACAAAG 59.833 50.000 9.70 0.00 38.97 2.77
3904 4099 2.335712 GCAACCCTTTCAGGCTCGG 61.336 63.158 0.00 0.00 32.73 4.63
3993 4188 3.071580 CTGAAGGAGACCATTCGGC 57.928 57.895 0.00 0.00 34.57 5.54
4042 4237 4.335647 CAACTCGGGGCAGCACCT 62.336 66.667 13.26 0.00 39.10 4.00
4045 4240 3.126703 TTTCCAACTCGGGGCAGCA 62.127 57.895 0.00 0.00 34.36 4.41
4118 4313 3.772025 TCCTCCAGTTCTGAATCCTCTTC 59.228 47.826 1.00 0.00 0.00 2.87
4139 4451 7.807977 TTTGGTGCTATAATTCTGGATTCTC 57.192 36.000 0.00 0.00 0.00 2.87
4221 4539 5.048153 TCAGTTATCGTCAGTCAGACTTG 57.952 43.478 0.00 0.00 45.32 3.16
4253 4579 1.867233 CACGAGGAAAGGACTTGTGTG 59.133 52.381 0.00 0.00 42.68 3.82
4351 4683 5.211201 CCCATCCTCCTATGAAACCAAAAT 58.789 41.667 0.00 0.00 0.00 1.82
4432 4766 2.369860 TGTCACAGAGAATGCCAGAAGT 59.630 45.455 0.00 0.00 0.00 3.01
4471 4805 4.753107 CGTCCTGTAGAACTTGCCTTTTAA 59.247 41.667 0.00 0.00 0.00 1.52
4608 4942 0.033405 TCCGGACTCGATCCTTCCTT 60.033 55.000 0.00 0.00 46.69 3.36
4789 5123 2.571653 ACTCCTCCCATGTCAAATTCGA 59.428 45.455 0.00 0.00 0.00 3.71
5010 5344 9.917887 AAGATTTTCAGAATCAACAGATCCTAT 57.082 29.630 2.07 0.00 0.00 2.57
5011 5345 9.745018 AAAGATTTTCAGAATCAACAGATCCTA 57.255 29.630 2.07 0.00 0.00 2.94
5012 5346 8.647256 AAAGATTTTCAGAATCAACAGATCCT 57.353 30.769 2.07 0.00 0.00 3.24
5014 5348 9.903682 TCAAAAGATTTTCAGAATCAACAGATC 57.096 29.630 2.07 0.00 0.00 2.75
5016 5350 9.903682 GATCAAAAGATTTTCAGAATCAACAGA 57.096 29.630 2.07 0.00 0.00 3.41
5017 5351 9.909644 AGATCAAAAGATTTTCAGAATCAACAG 57.090 29.630 0.00 0.00 0.00 3.16
5020 5354 9.616634 CGAAGATCAAAAGATTTTCAGAATCAA 57.383 29.630 0.00 0.00 0.00 2.57
5021 5355 8.239314 CCGAAGATCAAAAGATTTTCAGAATCA 58.761 33.333 0.00 0.00 0.00 2.57
5022 5356 8.239998 ACCGAAGATCAAAAGATTTTCAGAATC 58.760 33.333 0.00 0.00 0.00 2.52
5023 5357 8.115490 ACCGAAGATCAAAAGATTTTCAGAAT 57.885 30.769 0.00 0.00 0.00 2.40
5024 5358 7.445402 AGACCGAAGATCAAAAGATTTTCAGAA 59.555 33.333 0.00 0.00 0.00 3.02
5025 5359 6.936900 AGACCGAAGATCAAAAGATTTTCAGA 59.063 34.615 0.00 0.00 0.00 3.27
5026 5360 7.118971 AGAGACCGAAGATCAAAAGATTTTCAG 59.881 37.037 0.00 1.60 0.00 3.02
5027 5361 6.936900 AGAGACCGAAGATCAAAAGATTTTCA 59.063 34.615 0.00 0.00 0.00 2.69
5028 5362 7.371126 AGAGACCGAAGATCAAAAGATTTTC 57.629 36.000 0.00 0.00 0.00 2.29
5029 5363 8.097662 ACTAGAGACCGAAGATCAAAAGATTTT 58.902 33.333 0.00 0.00 0.00 1.82
5098 5432 5.292765 AGCAACGAGATATACTTGTCCATG 58.707 41.667 0.00 0.00 41.89 3.66
5099 5433 5.537300 AGCAACGAGATATACTTGTCCAT 57.463 39.130 0.00 0.00 41.89 3.41
5186 5527 1.025812 AGGAAGTACTCGAGATGCCG 58.974 55.000 21.68 0.00 0.00 5.69
5188 5529 1.407258 AGCAGGAAGTACTCGAGATGC 59.593 52.381 21.68 15.52 0.00 3.91
5195 5536 4.022242 TGACACTAACAGCAGGAAGTACTC 60.022 45.833 0.00 0.00 0.00 2.59
5210 5551 3.949132 TGGCACAGCAATATGACACTAA 58.051 40.909 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.