AutoCloner

Multiple sequence alignment - TraesCS7B01G024200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G024200	chr7B	100.000	2744	0	0	1	2744	23318943	23316200	0.000000e+00	5068
1	TraesCS7B01G024200	chr7B	86.433	2108	204	37	665	2744	665522785	665524838	0.000000e+00	2233
2	TraesCS7B01G024200	chr7B	87.611	1348	127	24	1321	2645	665531654	665532984	0.000000e+00	1528
3	TraesCS7B01G024200	chr7B	91.633	980	70	6	1214	2183	665539196	665540173	0.000000e+00	1345
4	TraesCS7B01G024200	chr7B	88.496	991	68	24	804	1778	665534597	665535557	0.000000e+00	1157
5	TraesCS7B01G024200	chr7B	79.408	1520	225	55	666	2142	23325927	23324453	0.000000e+00	992
6	TraesCS7B01G024200	chr7B	85.993	614	43	21	726	1325	665525593	665526177	3.880000e-173	617
7	TraesCS7B01G024200	chr7B	79.630	864	127	29	1887	2744	23265006	23264186	2.370000e-160	575
8	TraesCS7B01G024200	chr7D	85.795	2133	183	62	665	2744	590647415	590649480	0.000000e+00	2150
9	TraesCS7B01G024200	chr7D	88.289	1759	132	42	675	2414	590731819	590733522	0.000000e+00	2039
10	TraesCS7B01G024200	chr7D	87.996	1108	94	24	726	1816	590651931	590653016	0.000000e+00	1273
11	TraesCS7B01G024200	chr7D	88.217	314	24	8	2441	2744	590733516	590733826	2.010000e-96	363
12	TraesCS7B01G024200	chr7A	83.318	1091	124	28	680	1758	85693515	85694559	0.000000e+00	953
13	TraesCS7B01G024200	chr1D	92.044	641	42	8	15	650	80886687	80886051	0.000000e+00	893
14	TraesCS7B01G024200	chr4B	90.244	656	49	10	2	652	414221426	414222071	0.000000e+00	843
15	TraesCS7B01G024200	chr1A	89.426	662	52	10	1	649	368848617	368849273	0.000000e+00	819
16	TraesCS7B01G024200	chr6B	88.739	666	51	14	2	654	711631793	711631139	0.000000e+00	793
17	TraesCS7B01G024200	chr6A	88.739	666	49	16	2	649	543535289	543534632	0.000000e+00	791
18	TraesCS7B01G024200	chr6A	79.679	561	90	16	1196	1738	604578950	604578396	1.540000e-102	383
19	TraesCS7B01G024200	chr2B	88.619	659	47	16	10	649	90635895	90635246	0.000000e+00	776
20	TraesCS7B01G024200	chr2B	86.536	661	59	16	2	652	504248820	504249460	0.000000e+00	701
21	TraesCS7B01G024200	chr2B	85.083	181	13	7	473	652	657656846	657656679	3.630000e-39	172
22	TraesCS7B01G024200	chr2B	84.615	182	15	8	473	653	795448682	795448851	4.700000e-38	169
23	TraesCS7B01G024200	chr2B	84.831	178	14	7	473	649	47547104	47547269	1.690000e-37	167
24	TraesCS7B01G024200	chr2B	84.181	177	16	5	473	649	772354907	772355071	7.860000e-36	161
25	TraesCS7B01G024200	chr2B	84.270	178	14	7	473	649	786700874	786700710	7.860000e-36	161
26	TraesCS7B01G024200	chr2B	83.978	181	16	6	473	653	801252092	801251925	7.860000e-36	161
27	TraesCS7B01G024200	chr2B	83.799	179	16	6	473	650	127094890	127095056	1.020000e-34	158
28	TraesCS7B01G024200	chr3A	88.102	664	56	12	3	652	389051957	389052611	0.000000e+00	767
29	TraesCS7B01G024200	chr4A	87.386	658	55	19	1	652	328327205	328327840	0.000000e+00	730
30	TraesCS7B01G024200	chr5B	83.509	570	62	19	2101	2649	93470962	93470404	1.130000e-138	503

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G024200	chr7B	23316200	23318943	2743	True	5068.000000	5068	100.000000	1	2744	1	chr7B.!!$R2	2743
1	TraesCS7B01G024200	chr7B	665522785	665526177	3392	False	1425.000000	2233	86.213000	665	2744	2	chr7B.!!$F1	2079
2	TraesCS7B01G024200	chr7B	665531654	665540173	8519	False	1343.333333	1528	89.246667	804	2645	3	chr7B.!!$F2	1841
3	TraesCS7B01G024200	chr7B	23324453	23325927	1474	True	992.000000	992	79.408000	666	2142	1	chr7B.!!$R3	1476
4	TraesCS7B01G024200	chr7B	23264186	23265006	820	True	575.000000	575	79.630000	1887	2744	1	chr7B.!!$R1	857
5	TraesCS7B01G024200	chr7D	590647415	590653016	5601	False	1711.500000	2150	86.895500	665	2744	2	chr7D.!!$F1	2079
6	TraesCS7B01G024200	chr7D	590731819	590733826	2007	False	1201.000000	2039	88.253000	675	2744	2	chr7D.!!$F2	2069
7	TraesCS7B01G024200	chr7A	85693515	85694559	1044	False	953.000000	953	83.318000	680	1758	1	chr7A.!!$F1	1078
8	TraesCS7B01G024200	chr1D	80886051	80886687	636	True	893.000000	893	92.044000	15	650	1	chr1D.!!$R1	635
9	TraesCS7B01G024200	chr4B	414221426	414222071	645	False	843.000000	843	90.244000	2	652	1	chr4B.!!$F1	650
10	TraesCS7B01G024200	chr1A	368848617	368849273	656	False	819.000000	819	89.426000	1	649	1	chr1A.!!$F1	648
11	TraesCS7B01G024200	chr6B	711631139	711631793	654	True	793.000000	793	88.739000	2	654	1	chr6B.!!$R1	652
12	TraesCS7B01G024200	chr6A	543534632	543535289	657	True	791.000000	791	88.739000	2	649	1	chr6A.!!$R1	647
13	TraesCS7B01G024200	chr6A	604578396	604578950	554	True	383.000000	383	79.679000	1196	1738	1	chr6A.!!$R2	542
14	TraesCS7B01G024200	chr2B	90635246	90635895	649	True	776.000000	776	88.619000	10	649	1	chr2B.!!$R1	639
15	TraesCS7B01G024200	chr2B	504248820	504249460	640	False	701.000000	701	86.536000	2	652	1	chr2B.!!$F3	650
16	TraesCS7B01G024200	chr3A	389051957	389052611	654	False	767.000000	767	88.102000	3	652	1	chr3A.!!$F1	649
17	TraesCS7B01G024200	chr4A	328327205	328327840	635	False	730.000000	730	87.386000	1	652	1	chr4A.!!$F1	651
18	TraesCS7B01G024200	chr5B	93470404	93470962	558	True	503.000000	503	83.509000	2101	2649	1	chr5B.!!$R1	548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
801	891	0.677731	TCCGAGTACAGTACGTGGGG	60.678	60.0	18.77	12.61	0.0	4.96	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2526	9110	0.179124	GCGTTGCAAACCCTGTTCAA	60.179	50.0	0.0	0.0	46.28	2.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
204	207	9.818796	TTGTTTTGAAAGCAAACTTGTAATTTC	57.181	25.926	4.69	8.64	43.27	2.17
267	274	3.675775	CGGATTGCAAATAAACACCCCAG	60.676	47.826	1.71	0.00	0.00	4.45
319	326	8.245195	TCAATAACTACACATGCATACCTCTA	57.755	34.615	0.00	0.00	0.00	2.43
358	384	5.869888	GGAAAATAACAGAGAGAAAGCGAGA	59.130	40.000	0.00	0.00	0.00	4.04
362	388	3.066291	ACAGAGAGAAAGCGAGAGAGA	57.934	47.619	0.00	0.00	0.00	3.10
363	389	3.009723	ACAGAGAGAAAGCGAGAGAGAG	58.990	50.000	0.00	0.00	0.00	3.20
364	390	2.355756	CAGAGAGAAAGCGAGAGAGAGG	59.644	54.545	0.00	0.00	0.00	3.69
365	391	1.676006	GAGAGAAAGCGAGAGAGAGGG	59.324	57.143	0.00	0.00	0.00	4.30
367	393	1.676006	GAGAAAGCGAGAGAGAGGGAG	59.324	57.143	0.00	0.00	0.00	4.30
368	394	0.744281	GAAAGCGAGAGAGAGGGAGG	59.256	60.000	0.00	0.00	0.00	4.30
372	398	1.150536	CGAGAGAGAGGGAGGGAGG	59.849	68.421	0.00	0.00	0.00	4.30
406	460	4.877773	AGAGAGAGAGAGAGAGAGAGAGT	58.122	47.826	0.00	0.00	0.00	3.24
409	463	2.171448	AGAGAGAGAGAGAGAGAGTGGC	59.829	54.545	0.00	0.00	0.00	5.01
443	512	1.134037	GGGAGAGAGAGACGCCTTAGA	60.134	57.143	0.00	0.00	0.00	2.10
554	624	6.534475	ACACAAATATGATGCCTCACAAAT	57.466	33.333	0.00	0.00	33.22	2.32
614	692	7.122948	TGGGTTAAGAGTGTGTGTTATGTTTTT	59.877	33.333	0.00	0.00	0.00	1.94
654	732	6.455246	GCACGGACTCTTTTGCTAGTATAAAC	60.455	42.308	0.00	0.00	32.00	2.01
655	733	6.035758	CACGGACTCTTTTGCTAGTATAAACC	59.964	42.308	0.00	0.00	0.00	3.27
658	736	7.280205	CGGACTCTTTTGCTAGTATAAACCAAT	59.720	37.037	0.00	0.00	0.00	3.16
659	737	9.609346	GGACTCTTTTGCTAGTATAAACCAATA	57.391	33.333	0.00	0.00	0.00	1.90
696	774	5.665459	ACTGATTAATTCCTTCTCCTCACG	58.335	41.667	0.00	0.00	0.00	4.35
707	785	1.006571	TCCTCACGTTCGTGGAAGC	60.007	57.895	22.02	0.00	36.82	3.86
749	838	3.561503	GACGACCTTTTGTTGCCATTAC	58.438	45.455	0.00	0.00	0.00	1.89
791	881	5.617528	ATCTAGAGAGAGTTCCGAGTACA	57.382	43.478	0.00	0.00	34.35	2.90
793	883	3.706600	AGAGAGAGTTCCGAGTACAGT	57.293	47.619	0.00	0.00	0.00	3.55
794	884	4.822685	AGAGAGAGTTCCGAGTACAGTA	57.177	45.455	0.00	0.00	0.00	2.74
795	885	4.506758	AGAGAGAGTTCCGAGTACAGTAC	58.493	47.826	2.05	2.05	0.00	2.73
796	886	3.260740	AGAGAGTTCCGAGTACAGTACG	58.739	50.000	5.02	0.00	0.00	3.67
797	887	2.999355	GAGAGTTCCGAGTACAGTACGT	59.001	50.000	5.02	0.00	0.00	3.57
799	889	1.808945	AGTTCCGAGTACAGTACGTGG	59.191	52.381	14.87	14.87	0.00	4.94
800	890	1.135575	GTTCCGAGTACAGTACGTGGG	60.136	57.143	18.77	14.52	0.00	4.61
801	891	0.677731	TCCGAGTACAGTACGTGGGG	60.678	60.000	18.77	12.61	0.00	4.96
806	896	3.552684	CGAGTACAGTACGTGGGGAAAAA	60.553	47.826	5.02	0.00	0.00	1.94
825	2980	5.461032	AAAAATGGGATGCAAACGTAGAA	57.539	34.783	0.00	0.00	0.00	2.10
920	3097	0.899717	ATGCCACACCACATGGGAAC	60.900	55.000	0.00	0.00	41.36	3.62
935	3136	2.037902	TGGGAACAGACTAATCAACGCA	59.962	45.455	0.00	0.00	35.01	5.24
1022	3244	4.640771	TGGAACAGCTTAGGACATTTCT	57.359	40.909	0.00	0.00	0.00	2.52
1023	3245	5.755409	TGGAACAGCTTAGGACATTTCTA	57.245	39.130	0.00	0.00	0.00	2.10
1024	3246	6.121776	TGGAACAGCTTAGGACATTTCTAA	57.878	37.500	0.00	0.00	0.00	2.10
1025	3247	6.721318	TGGAACAGCTTAGGACATTTCTAAT	58.279	36.000	0.00	0.00	0.00	1.73
1026	3248	6.823689	TGGAACAGCTTAGGACATTTCTAATC	59.176	38.462	0.00	0.00	0.00	1.75
1027	3249	6.018669	GGAACAGCTTAGGACATTTCTAATCG	60.019	42.308	0.00	0.00	0.00	3.34
1028	3250	6.222038	ACAGCTTAGGACATTTCTAATCGA	57.778	37.500	0.00	0.00	0.00	3.59
1029	3251	6.043411	ACAGCTTAGGACATTTCTAATCGAC	58.957	40.000	0.00	0.00	0.00	4.20
1155	3386	4.832608	GGCGACATCCCGACCACC	62.833	72.222	0.00	0.00	0.00	4.61
1353	3590	0.331616	TCCTCGTCCTCACCATCTCA	59.668	55.000	0.00	0.00	0.00	3.27
1564	3807	1.668151	GTGTTCCTCACCGTGGCTC	60.668	63.158	0.00	0.00	40.84	4.70
1754	8207	6.414408	AAAGCTCACTTGATGTTTAGATCG	57.586	37.500	0.00	0.00	35.85	3.69
1872	8330	9.184062	CTTAAAATGTAGTGTAATCGCCGTATA	57.816	33.333	0.00	0.00	0.00	1.47
1885	8363	7.727331	AATCGCCGTATATAGGAGTAGTATC	57.273	40.000	3.98	0.00	0.00	2.24
2109	8619	7.845066	AACTCCTAAATATCGAAACCTGAAC	57.155	36.000	0.00	0.00	0.00	3.18
2175	8685	2.028748	GTGCTCTGCCCATTTCAACATT	60.029	45.455	0.00	0.00	0.00	2.71
2279	8795	6.737720	TCATATCCATTGTGAGAGCTAACT	57.262	37.500	0.00	0.00	0.00	2.24
2293	8809	4.049186	GAGCTAACTGTCTTTCGTCAACA	58.951	43.478	0.00	0.00	0.00	3.33
2371	8887	1.670791	TTCGTTTGTTCCGCTCCTTT	58.329	45.000	0.00	0.00	0.00	3.11
2388	8904	2.424601	CCTTTCACGCATTCCACATCAT	59.575	45.455	0.00	0.00	0.00	2.45
2399	8915	9.013229	ACGCATTCCACATCATATAAAACATAT	57.987	29.630	0.00	0.00	0.00	1.78
2435	8994	9.492973	ACAATTCTAAAATGCAAGCTTTATTGT	57.507	25.926	0.00	10.46	32.56	2.71
2454	9013	9.699703	TTTATTGTGGTTAAAAATACTCTTGCC	57.300	29.630	0.00	0.00	0.00	4.52
2526	9110	2.893637	CAACTCTTCGGATTCCACGAT	58.106	47.619	3.09	0.00	40.38	3.73
2577	9161	5.655532	GCTGATATCCAGGAATTATGCCATT	59.344	40.000	0.00	0.00	43.13	3.16
2590	9174	9.598517	GGAATTATGCCATTAAAGTCATCAAAA	57.401	29.630	0.00	0.00	0.00	2.44
2637	9221	7.442364	CCGAATAGGATATCAAGCTTCAAGAAA	59.558	37.037	4.83	0.00	45.00	2.52
2668	9255	2.159170	CCAAAGGTCGCTTTTGTTTCCA	60.159	45.455	11.37	0.00	34.51	3.53
2669	9256	3.516615	CAAAGGTCGCTTTTGTTTCCAA	58.483	40.909	6.36	0.00	32.30	3.53
2684	9272	1.074072	CCAACCGTTGGTCCATGGA	59.926	57.895	20.55	11.44	45.93	3.41
2688	9276	1.374947	CCGTTGGTCCATGGAGTGT	59.625	57.895	16.81	0.00	0.00	3.55
2689	9277	0.611200	CCGTTGGTCCATGGAGTGTA	59.389	55.000	16.81	0.00	0.00	2.90
2698	9286	2.499693	TCCATGGAGTGTATCGCTTTCA	59.500	45.455	11.44	0.00	0.00	2.69
2700	9288	3.525537	CATGGAGTGTATCGCTTTCAGT	58.474	45.455	0.00	0.00	0.00	3.41
2715	9303	5.615544	CGCTTTCAGTGTTGAATGGAGTAAG	60.616	44.000	0.00	0.00	42.60	2.34
2726	9314	6.932356	TGAATGGAGTAAGATTGAAGATGC	57.068	37.500	0.00	0.00	0.00	3.91

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
197	200	3.802685	ACGGATCTTGCGCTAGAAATTAC	59.197	43.478	24.69	9.19	33.30	1.89
225	231	0.232303	GATTGCCGCCGATACGAAAG	59.768	55.000	0.00	0.00	34.06	2.62
226	232	1.155424	GGATTGCCGCCGATACGAAA	61.155	55.000	0.00	0.00	34.06	3.46
358	384	0.998945	CTCTCCCTCCCTCCCTCTCT	60.999	65.000	0.00	0.00	0.00	3.10
362	388	0.998945	CTCTCTCTCCCTCCCTCCCT	60.999	65.000	0.00	0.00	0.00	4.20
363	389	0.996762	TCTCTCTCTCCCTCCCTCCC	60.997	65.000	0.00	0.00	0.00	4.30
364	390	0.478507	CTCTCTCTCTCCCTCCCTCC	59.521	65.000	0.00	0.00	0.00	4.30
365	391	1.421646	CTCTCTCTCTCTCCCTCCCTC	59.578	61.905	0.00	0.00	0.00	4.30
367	393	1.421646	CTCTCTCTCTCTCTCCCTCCC	59.578	61.905	0.00	0.00	0.00	4.30
368	394	2.370189	CTCTCTCTCTCTCTCTCCCTCC	59.630	59.091	0.00	0.00	0.00	4.30
372	398	4.219115	TCTCTCTCTCTCTCTCTCTCTCC	58.781	52.174	0.00	0.00	0.00	3.71
406	460	2.277072	CTCTCTCCTCCCTCGCCA	59.723	66.667	0.00	0.00	0.00	5.69
409	463	1.150536	CTCCCTCTCTCCTCCCTCG	59.849	68.421	0.00	0.00	0.00	4.63
554	624	7.942894	TCACTCGATAGGTCCATCTCTTTTATA	59.057	37.037	0.00	0.00	0.00	0.98
574	644	1.604604	AACCCAACAACCATCACTCG	58.395	50.000	0.00	0.00	0.00	4.18
654	732	6.416631	TCAGTCTCAAGATCTGGATATTGG	57.583	41.667	15.07	8.32	39.68	3.16
655	733	9.993454	TTAATCAGTCTCAAGATCTGGATATTG	57.007	33.333	0.00	10.57	40.35	1.90
659	737	8.156165	GGAATTAATCAGTCTCAAGATCTGGAT	58.844	37.037	0.00	0.00	0.00	3.41
662	740	8.961294	AAGGAATTAATCAGTCTCAAGATCTG	57.039	34.615	0.00	0.00	0.00	2.90
663	741	8.991275	AGAAGGAATTAATCAGTCTCAAGATCT	58.009	33.333	0.00	0.00	0.00	2.75
696	774	1.862806	GCAGTCTGCTTCCACGAAC	59.137	57.895	17.89	0.00	40.96	3.95
749	838	6.313744	AGATTTTCTTTGGTTAACGTCCAG	57.686	37.500	0.00	0.00	36.28	3.86
806	896	5.659440	ATTTTCTACGTTTGCATCCCATT	57.341	34.783	0.00	0.00	0.00	3.16
920	3097	1.725641	TGGCTGCGTTGATTAGTCTG	58.274	50.000	0.00	0.00	0.00	3.51
925	3126	2.030363	CCAAAGTTGGCTGCGTTGATTA	60.030	45.455	0.00	0.00	42.21	1.75
1017	3239	4.199310	CCATGGTGTGGTCGATTAGAAAT	58.801	43.478	2.57	0.00	43.44	2.17
1018	3240	3.605634	CCATGGTGTGGTCGATTAGAAA	58.394	45.455	2.57	0.00	43.44	2.52
1019	3241	3.260475	CCATGGTGTGGTCGATTAGAA	57.740	47.619	2.57	0.00	43.44	2.10
1020	3242	2.979814	CCATGGTGTGGTCGATTAGA	57.020	50.000	2.57	0.00	43.44	2.10
1336	3573	1.537776	GCATGAGATGGTGAGGACGAG	60.538	57.143	0.00	0.00	0.00	4.18
1353	3590	1.205893	GTGAAGGAGAAGAGGACGCAT	59.794	52.381	0.00	0.00	0.00	4.73
1428	3668	4.258543	AGAAGTTGAAGACGTTGAAACCA	58.741	39.130	0.00	0.00	0.00	3.67
1867	8325	9.433153	TCACAAGTGATACTACTCCTATATACG	57.567	37.037	0.00	0.00	34.14	3.06
2097	8607	8.508875	GGTAAATTCAAATAGTTCAGGTTTCGA	58.491	33.333	0.00	0.00	0.00	3.71
2098	8608	8.293867	TGGTAAATTCAAATAGTTCAGGTTTCG	58.706	33.333	0.00	0.00	0.00	3.46
2265	8781	4.202121	ACGAAAGACAGTTAGCTCTCACAA	60.202	41.667	0.00	0.00	0.00	3.33
2279	8795	4.336889	AGGAAGATGTTGACGAAAGACA	57.663	40.909	0.00	0.00	0.00	3.41
2316	8832	4.234574	CACACTTACTATTGTGCTCGACA	58.765	43.478	0.00	0.00	36.95	4.35
2371	8887	6.317391	TGTTTTATATGATGTGGAATGCGTGA	59.683	34.615	0.00	0.00	0.00	4.35
2399	8915	7.765307	TGCATTTTAGAATTGTTTTGCCAAAA	58.235	26.923	0.00	0.00	0.00	2.44
2415	8974	7.656707	AACCACAATAAAGCTTGCATTTTAG	57.343	32.000	0.00	0.00	0.00	1.85
2417	8976	8.443953	TTTAACCACAATAAAGCTTGCATTTT	57.556	26.923	0.00	0.00	0.00	1.82
2421	8980	8.983724	GTATTTTTAACCACAATAAAGCTTGCA	58.016	29.630	0.00	0.00	0.00	4.08
2435	8994	4.525100	GTGGGGCAAGAGTATTTTTAACCA	59.475	41.667	0.00	0.00	0.00	3.67
2454	9013	1.560505	CCCTTTGGAAGATTGGTGGG	58.439	55.000	0.00	0.00	0.00	4.61
2526	9110	0.179124	GCGTTGCAAACCCTGTTCAA	60.179	50.000	0.00	0.00	46.28	2.69
2559	9143	7.068702	TGACTTTAATGGCATAATTCCTGGAT	58.931	34.615	0.00	0.00	0.00	3.41
2590	9174	4.460948	GAGTGCCAAACAATCCATTGAT	57.539	40.909	6.29	0.00	40.14	2.57
2637	9221	5.609533	AAGCGACCTTTGGTAGTATGTAT	57.390	39.130	0.00	0.00	35.25	2.29
2642	9229	4.075963	ACAAAAGCGACCTTTGGTAGTA	57.924	40.909	8.53	0.00	42.15	1.82
2643	9230	2.927028	ACAAAAGCGACCTTTGGTAGT	58.073	42.857	8.53	0.00	42.15	2.73
2644	9231	3.982576	AACAAAAGCGACCTTTGGTAG	57.017	42.857	8.53	0.00	42.93	3.18
2668	9255	0.250727	CACTCCATGGACCAACGGTT	60.251	55.000	11.44	0.00	35.25	4.44
2669	9256	1.374947	CACTCCATGGACCAACGGT	59.625	57.895	11.44	2.90	39.44	4.83
2684	9272	3.990092	TCAACACTGAAAGCGATACACT	58.010	40.909	0.00	0.00	37.60	3.55
2688	9276	4.574892	TCCATTCAACACTGAAAGCGATA	58.425	39.130	0.00	0.00	44.64	2.92
2689	9277	3.411446	TCCATTCAACACTGAAAGCGAT	58.589	40.909	0.00	0.00	44.64	4.58
2698	9286	7.453393	TCTTCAATCTTACTCCATTCAACACT	58.547	34.615	0.00	0.00	0.00	3.55
2700	9288	7.148188	GCATCTTCAATCTTACTCCATTCAACA	60.148	37.037	0.00	0.00	0.00	3.33
2726	9314	2.913578	TGCAGCTTGCCACCAAGG	60.914	61.111	5.68	0.00	46.77	3.61

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.