Multiple sequence alignment - TraesCS7B01G023400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G023400 chr7B 100.000 3924 0 0 1 3924 22461695 22465618 0.000000e+00 7247.0
1 TraesCS7B01G023400 chr7B 90.429 1515 124 11 1429 2936 85310158 85308658 0.000000e+00 1975.0
2 TraesCS7B01G023400 chr7B 88.832 788 65 12 1 781 22511059 22511830 0.000000e+00 946.0
3 TraesCS7B01G023400 chr7B 81.579 228 29 9 3211 3429 602639134 602638911 4.030000e-40 176.0
4 TraesCS7B01G023400 chr7D 90.977 2948 184 45 47 2955 75957760 75954856 0.000000e+00 3895.0
5 TraesCS7B01G023400 chr7D 90.210 1522 134 6 1407 2922 124034243 124035755 0.000000e+00 1971.0
6 TraesCS7B01G023400 chr7D 84.226 989 93 32 2959 3924 75954790 75953842 0.000000e+00 904.0
7 TraesCS7B01G023400 chr7A 91.489 2162 117 34 1232 3366 80143157 80145278 0.000000e+00 2911.0
8 TraesCS7B01G023400 chr7A 89.533 1519 136 12 1428 2936 126756607 126755102 0.000000e+00 1903.0
9 TraesCS7B01G023400 chr7A 86.212 1378 118 36 899 2267 80429839 80428525 0.000000e+00 1426.0
10 TraesCS7B01G023400 chr7A 87.747 1265 96 33 1 1240 80141881 80143111 0.000000e+00 1423.0
11 TraesCS7B01G023400 chr7A 89.676 678 61 5 2260 2934 80428164 80427493 0.000000e+00 856.0
12 TraesCS7B01G023400 chr7A 85.542 747 78 14 2177 2922 126750168 126749451 0.000000e+00 754.0
13 TraesCS7B01G023400 chr7A 79.608 255 34 13 76 328 46775931 46775693 2.430000e-37 167.0
14 TraesCS7B01G023400 chr7A 85.507 138 13 3 1089 1219 126756849 126756712 1.900000e-28 137.0
15 TraesCS7B01G023400 chr6B 83.105 219 29 6 3213 3424 670039488 670039271 4.000000e-45 193.0
16 TraesCS7B01G023400 chr6B 78.698 169 20 14 1737 1900 616427700 616427543 8.970000e-17 99.0
17 TraesCS7B01G023400 chr5A 79.921 254 45 6 77 326 676878783 676879034 8.660000e-42 182.0
18 TraesCS7B01G023400 chr6D 82.110 218 31 7 3219 3429 1428388 1428172 3.120000e-41 180.0
19 TraesCS7B01G023400 chr6D 74.706 340 54 29 1571 1900 410040979 410040662 5.320000e-24 122.0
20 TraesCS7B01G023400 chr6D 77.184 206 37 7 130 326 437919429 437919633 1.150000e-20 111.0
21 TraesCS7B01G023400 chr4B 82.192 219 29 8 3219 3429 627944295 627944079 3.120000e-41 180.0
22 TraesCS7B01G023400 chr4B 80.000 240 36 9 3193 3424 57270346 57270581 2.430000e-37 167.0
23 TraesCS7B01G023400 chr3A 83.871 186 25 3 115 298 713857144 713856962 5.210000e-39 172.0
24 TraesCS7B01G023400 chr3A 81.529 157 19 8 1707 1858 10291194 10291345 1.920000e-23 121.0
25 TraesCS7B01G023400 chr5B 83.246 191 26 5 3231 3415 276957671 276957481 1.870000e-38 171.0
26 TraesCS7B01G023400 chr1A 81.690 213 30 7 3220 3424 108074852 108075063 6.740000e-38 169.0
27 TraesCS7B01G023400 chr4D 82.166 157 18 8 1707 1858 127928638 127928789 4.120000e-25 126.0
28 TraesCS7B01G023400 chr5D 82.313 147 23 3 140 284 201524400 201524255 1.480000e-24 124.0
29 TraesCS7B01G023400 chr2B 81.022 137 16 6 173 307 5997694 5997566 2.490000e-17 100.0
30 TraesCS7B01G023400 chr3B 89.796 49 4 1 566 614 29104107 29104060 1.180000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G023400 chr7B 22461695 22465618 3923 False 7247.0 7247 100.0000 1 3924 1 chr7B.!!$F1 3923
1 TraesCS7B01G023400 chr7B 85308658 85310158 1500 True 1975.0 1975 90.4290 1429 2936 1 chr7B.!!$R1 1507
2 TraesCS7B01G023400 chr7B 22511059 22511830 771 False 946.0 946 88.8320 1 781 1 chr7B.!!$F2 780
3 TraesCS7B01G023400 chr7D 75953842 75957760 3918 True 2399.5 3895 87.6015 47 3924 2 chr7D.!!$R1 3877
4 TraesCS7B01G023400 chr7D 124034243 124035755 1512 False 1971.0 1971 90.2100 1407 2922 1 chr7D.!!$F1 1515
5 TraesCS7B01G023400 chr7A 80141881 80145278 3397 False 2167.0 2911 89.6180 1 3366 2 chr7A.!!$F1 3365
6 TraesCS7B01G023400 chr7A 80427493 80429839 2346 True 1141.0 1426 87.9440 899 2934 2 chr7A.!!$R3 2035
7 TraesCS7B01G023400 chr7A 126755102 126756849 1747 True 1020.0 1903 87.5200 1089 2936 2 chr7A.!!$R4 1847
8 TraesCS7B01G023400 chr7A 126749451 126750168 717 True 754.0 754 85.5420 2177 2922 1 chr7A.!!$R2 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1021 0.039256 CATGTTGTTGCGTTGGGGAG 60.039 55.0 0.0 0.0 0.0 4.30 F
991 1022 0.179004 ATGTTGTTGCGTTGGGGAGA 60.179 50.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2330 0.108567 GGAGCTCACCTTCGAACTCC 60.109 60.0 17.19 12.78 40.2 3.85 R
2931 3497 0.319469 TTGATGACGAGCGCTGTTGA 60.319 50.0 18.48 4.95 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.512415 CGCCAAATCAATTTAAAAACCAAGCA 60.512 34.615 0.00 0.00 0.00 3.91
57 58 9.853555 AATTGATGCAATTAACTAATTCGTCAA 57.146 25.926 18.67 18.67 41.50 3.18
59 60 9.853555 TTGATGCAATTAACTAATTCGTCAAAT 57.146 25.926 16.57 0.00 36.76 2.32
94 95 6.092259 GGCTTGCATCTATACCCGTATAAAAG 59.908 42.308 0.00 0.00 0.00 2.27
95 96 6.649557 GCTTGCATCTATACCCGTATAAAAGT 59.350 38.462 0.00 0.00 0.00 2.66
157 158 1.936547 GATCAATCCAACGACTCAGGC 59.063 52.381 0.00 0.00 0.00 4.85
167 168 0.820226 CGACTCAGGCTCCTCAATGA 59.180 55.000 0.00 0.00 0.00 2.57
171 172 2.170187 ACTCAGGCTCCTCAATGATGAC 59.830 50.000 0.00 0.00 0.00 3.06
188 189 4.511454 TGATGACCGCTCAACATATTTAGC 59.489 41.667 0.00 0.00 32.60 3.09
337 338 8.166422 AGGCATTTACTAGTATTATTTGTGGC 57.834 34.615 2.79 7.52 0.00 5.01
378 382 8.937634 TCGTATTTTCCTTAACAGTAGATTCC 57.062 34.615 0.00 0.00 0.00 3.01
441 445 4.755123 AGTATAATTAGCCACCAACATCGC 59.245 41.667 0.00 0.00 0.00 4.58
456 460 1.536766 CATCGCCACAACACAGTCAAT 59.463 47.619 0.00 0.00 0.00 2.57
461 465 1.001048 CCACAACACAGTCAATGCCAG 60.001 52.381 0.00 0.00 0.00 4.85
499 503 2.888513 GTCACATGACATCACTGCAC 57.111 50.000 7.15 0.00 44.18 4.57
500 504 2.420642 GTCACATGACATCACTGCACT 58.579 47.619 7.15 0.00 44.18 4.40
501 505 2.414481 GTCACATGACATCACTGCACTC 59.586 50.000 7.15 0.00 44.18 3.51
502 506 2.037511 TCACATGACATCACTGCACTCA 59.962 45.455 0.00 0.00 0.00 3.41
516 520 7.660112 TCACTGCACTCATCAAATAATGTTTT 58.340 30.769 0.00 0.00 0.00 2.43
536 541 0.473755 ATCCCATAGCAATGCACGGA 59.526 50.000 8.35 6.53 0.00 4.69
750 772 1.027792 AGTCCCAAAAACACGTGCGT 61.028 50.000 17.22 0.00 0.00 5.24
763 785 1.445410 GTGCGTCCGTCACATGCTA 60.445 57.895 0.00 0.00 34.73 3.49
812 840 0.530650 CGACATGCTGGCTCGGTTAT 60.531 55.000 0.00 0.00 0.00 1.89
813 841 1.668419 GACATGCTGGCTCGGTTATT 58.332 50.000 0.00 0.00 0.00 1.40
814 842 2.801699 CGACATGCTGGCTCGGTTATTA 60.802 50.000 0.00 0.00 0.00 0.98
815 843 3.403038 GACATGCTGGCTCGGTTATTAT 58.597 45.455 0.00 0.00 0.00 1.28
816 844 3.403038 ACATGCTGGCTCGGTTATTATC 58.597 45.455 0.00 0.00 0.00 1.75
817 845 2.543777 TGCTGGCTCGGTTATTATCC 57.456 50.000 0.00 0.00 0.00 2.59
931 962 6.027749 GCTTACGGATCTTGTTAAAACCATG 58.972 40.000 0.00 0.00 0.00 3.66
932 963 4.434713 ACGGATCTTGTTAAAACCATGC 57.565 40.909 0.00 0.00 0.00 4.06
971 1002 2.050623 GGGCGACGTATACTCCGC 60.051 66.667 22.34 22.34 46.04 5.54
976 1007 1.862815 GCGACGTATACTCCGCATGTT 60.863 52.381 24.23 0.00 46.04 2.71
981 1012 2.285602 CGTATACTCCGCATGTTGTTGC 60.286 50.000 0.56 0.00 39.29 4.17
989 1020 2.037053 CATGTTGTTGCGTTGGGGA 58.963 52.632 0.00 0.00 0.00 4.81
990 1021 0.039256 CATGTTGTTGCGTTGGGGAG 60.039 55.000 0.00 0.00 0.00 4.30
991 1022 0.179004 ATGTTGTTGCGTTGGGGAGA 60.179 50.000 0.00 0.00 0.00 3.71
992 1023 0.179004 TGTTGTTGCGTTGGGGAGAT 60.179 50.000 0.00 0.00 0.00 2.75
993 1024 1.072489 TGTTGTTGCGTTGGGGAGATA 59.928 47.619 0.00 0.00 0.00 1.98
994 1025 1.467342 GTTGTTGCGTTGGGGAGATAC 59.533 52.381 0.00 0.00 0.00 2.24
995 1026 0.687920 TGTTGCGTTGGGGAGATACA 59.312 50.000 0.00 0.00 0.00 2.29
996 1027 1.338674 TGTTGCGTTGGGGAGATACAG 60.339 52.381 0.00 0.00 0.00 2.74
997 1028 0.981183 TTGCGTTGGGGAGATACAGT 59.019 50.000 0.00 0.00 0.00 3.55
1010 1052 5.184864 GGGAGATACAGTAGATGATGGACAG 59.815 48.000 0.00 0.00 0.00 3.51
1034 1076 2.768492 GCAGCAAGATGGCGGAAGG 61.768 63.158 0.00 0.00 39.27 3.46
1037 1079 2.464459 GCAAGATGGCGGAAGGTCG 61.464 63.158 0.00 0.00 0.00 4.79
1236 1311 1.406205 GGAGGTACAAGCAAGCTCTCC 60.406 57.143 9.97 9.97 40.51 3.71
1284 1417 1.076332 ACGATTAGGTGCAAAGTCGC 58.924 50.000 8.98 0.00 32.78 5.19
1301 1434 2.045045 CCCAGCTTTGCCGATCCA 60.045 61.111 0.00 0.00 0.00 3.41
1305 1438 2.034879 AGCTTTGCCGATCCACACG 61.035 57.895 0.00 0.00 0.00 4.49
1370 1508 7.279342 CACATGAACGAAATCTAATCATCTCG 58.721 38.462 0.00 0.00 0.00 4.04
1380 1532 6.662865 ATCTAATCATCTCGTGATGGTCTT 57.337 37.500 23.24 16.93 46.80 3.01
1759 1937 2.045926 GGCAACCGGATGCTGTCT 60.046 61.111 32.21 0.00 45.68 3.41
1831 2009 1.105167 ACTCCACGGACGACTTCACA 61.105 55.000 0.00 0.00 0.00 3.58
2427 2975 2.427905 CGACGAGGCGAACACGAA 60.428 61.111 0.00 0.00 0.00 3.85
2430 2978 1.335697 GACGAGGCGAACACGAAGAC 61.336 60.000 4.63 0.00 0.00 3.01
2458 3024 0.674581 CGAGGAGCAGTGCCAAATCA 60.675 55.000 12.58 0.00 0.00 2.57
2482 3048 1.543941 CCATCTTGATCGCGTCGCTC 61.544 60.000 16.36 7.61 0.00 5.03
2512 3078 4.586884 ACTACTACGACAGGATCAAGTCA 58.413 43.478 14.64 0.00 34.48 3.41
2854 3420 0.251386 ACAAGGAGGAGCTGTCTCGA 60.251 55.000 0.00 0.00 40.26 4.04
2863 3429 0.598562 AGCTGTCTCGACACGTCAAT 59.401 50.000 0.00 0.00 36.21 2.57
2942 3508 4.864916 TGATTAGAAATCAACAGCGCTC 57.135 40.909 7.13 0.00 0.00 5.03
2956 3522 1.226974 CGCTCGTCATCAACCCGAT 60.227 57.895 0.00 0.00 33.27 4.18
2973 3601 2.574322 CGATGCGACAGAAACTTTTGG 58.426 47.619 0.00 0.00 0.00 3.28
2974 3602 2.223144 CGATGCGACAGAAACTTTTGGA 59.777 45.455 0.00 0.00 0.00 3.53
2992 3620 6.796705 TTTGGAGTAGCTAGTTTTTGTAGC 57.203 37.500 1.78 0.00 42.85 3.58
2998 3626 7.148457 GGAGTAGCTAGTTTTTGTAGCGATTTT 60.148 37.037 1.78 0.00 46.37 1.82
2999 3627 7.740246 AGTAGCTAGTTTTTGTAGCGATTTTC 58.260 34.615 0.00 0.00 46.37 2.29
3000 3628 5.618561 AGCTAGTTTTTGTAGCGATTTTCG 58.381 37.500 0.00 0.00 46.37 3.46
3001 3629 5.407387 AGCTAGTTTTTGTAGCGATTTTCGA 59.593 36.000 0.32 0.00 46.37 3.71
3002 3630 6.092259 AGCTAGTTTTTGTAGCGATTTTCGAT 59.908 34.615 0.32 0.00 46.37 3.59
3003 3631 6.408325 GCTAGTTTTTGTAGCGATTTTCGATC 59.592 38.462 0.32 0.00 43.74 3.69
3004 3632 5.313623 AGTTTTTGTAGCGATTTTCGATCG 58.686 37.500 9.36 9.36 43.74 3.69
3005 3633 5.119588 AGTTTTTGTAGCGATTTTCGATCGA 59.880 36.000 15.15 15.15 43.74 3.59
3008 3636 4.692371 TGTAGCGATTTTCGATCGATTG 57.308 40.909 20.18 9.33 43.74 2.67
3009 3637 4.356289 TGTAGCGATTTTCGATCGATTGA 58.644 39.130 20.18 11.48 43.74 2.57
3010 3638 4.982295 TGTAGCGATTTTCGATCGATTGAT 59.018 37.500 20.18 12.83 43.74 2.57
3011 3639 4.380839 AGCGATTTTCGATCGATTGATG 57.619 40.909 20.18 10.41 43.74 3.07
3049 3677 9.683069 AACTCTAAAATTGCACATTTGAGTTAG 57.317 29.630 21.93 13.89 36.41 2.34
3051 3679 9.552114 CTCTAAAATTGCACATTTGAGTTAGAG 57.448 33.333 16.16 16.16 0.00 2.43
3069 3697 2.620115 AGAGTTGCACATTTGTCCACAG 59.380 45.455 0.00 0.00 0.00 3.66
3073 3701 0.670162 GCACATTTGTCCACAGCAGT 59.330 50.000 0.00 0.00 0.00 4.40
3099 3727 5.048294 TGCAGTCGACTCATTAAGTGACTTA 60.048 40.000 16.96 0.00 40.90 2.24
3104 3733 9.490379 AGTCGACTCATTAAGTGACTTATTTTT 57.510 29.630 13.58 0.00 40.43 1.94
3215 3847 8.310122 TGTTATAATAGTAATATCCCCGTCCC 57.690 38.462 0.00 0.00 0.00 4.46
3224 3856 2.729028 ATCCCCGTCCCTGTTTATTG 57.271 50.000 0.00 0.00 0.00 1.90
3234 3866 1.554587 CCTGTTTATTGGGCCCCCTTT 60.555 52.381 22.27 3.42 36.94 3.11
3301 3934 5.821516 AATGCATGGCACCAAAATTTATG 57.178 34.783 0.00 0.00 43.04 1.90
3304 3937 3.306703 GCATGGCACCAAAATTTATGTCG 59.693 43.478 0.00 0.00 0.00 4.35
3311 3944 5.288472 GCACCAAAATTTATGTCGTTGGATC 59.712 40.000 9.30 0.00 41.05 3.36
3312 3945 5.511377 CACCAAAATTTATGTCGTTGGATCG 59.489 40.000 9.30 0.00 41.05 3.69
3313 3946 5.182380 ACCAAAATTTATGTCGTTGGATCGT 59.818 36.000 9.30 0.00 41.05 3.73
3315 3948 6.033407 CCAAAATTTATGTCGTTGGATCGTTG 59.967 38.462 0.00 0.00 41.05 4.10
3316 3949 6.489127 AAATTTATGTCGTTGGATCGTTGA 57.511 33.333 0.00 0.00 0.00 3.18
3317 3950 6.489127 AATTTATGTCGTTGGATCGTTGAA 57.511 33.333 0.00 0.00 0.00 2.69
3318 3951 4.914312 TTATGTCGTTGGATCGTTGAAC 57.086 40.909 0.00 0.00 0.00 3.18
3319 3952 2.226602 TGTCGTTGGATCGTTGAACA 57.773 45.000 0.00 0.00 0.00 3.18
3320 3953 2.761559 TGTCGTTGGATCGTTGAACAT 58.238 42.857 0.00 0.00 0.00 2.71
3322 3955 3.924073 TGTCGTTGGATCGTTGAACATAG 59.076 43.478 0.00 0.00 0.00 2.23
3323 3956 3.924686 GTCGTTGGATCGTTGAACATAGT 59.075 43.478 0.00 0.00 0.00 2.12
3324 3957 3.924073 TCGTTGGATCGTTGAACATAGTG 59.076 43.478 0.00 0.00 0.00 2.74
3325 3958 3.678072 CGTTGGATCGTTGAACATAGTGT 59.322 43.478 0.00 0.00 0.00 3.55
3326 3959 4.201589 CGTTGGATCGTTGAACATAGTGTC 60.202 45.833 0.00 0.00 0.00 3.67
3327 3960 3.857052 TGGATCGTTGAACATAGTGTCC 58.143 45.455 0.00 0.00 0.00 4.02
3407 4046 7.225931 TCAAAATATGACCCTAAATACGAGTGC 59.774 37.037 0.00 0.00 31.50 4.40
3417 4056 7.493645 ACCCTAAATACGAGTGCACTAATAAAC 59.506 37.037 21.73 5.00 0.00 2.01
3425 4064 5.163953 CGAGTGCACTAATAAACCAAGACAG 60.164 44.000 21.73 0.00 0.00 3.51
3427 4066 5.934625 AGTGCACTAATAAACCAAGACAGAG 59.065 40.000 20.16 0.00 0.00 3.35
3428 4067 5.122396 GTGCACTAATAAACCAAGACAGAGG 59.878 44.000 10.32 0.00 0.00 3.69
3429 4068 5.012664 TGCACTAATAAACCAAGACAGAGGA 59.987 40.000 0.00 0.00 0.00 3.71
3430 4069 5.938125 GCACTAATAAACCAAGACAGAGGAA 59.062 40.000 0.00 0.00 0.00 3.36
3432 4071 7.121315 GCACTAATAAACCAAGACAGAGGAAAT 59.879 37.037 0.00 0.00 0.00 2.17
3433 4072 8.454106 CACTAATAAACCAAGACAGAGGAAATG 58.546 37.037 0.00 0.00 0.00 2.32
3434 4073 8.164070 ACTAATAAACCAAGACAGAGGAAATGT 58.836 33.333 0.00 0.00 0.00 2.71
3435 4074 7.839680 AATAAACCAAGACAGAGGAAATGTT 57.160 32.000 0.00 0.00 0.00 2.71
3485 4124 4.539870 CACAGATGCTCACAATTTCGTTT 58.460 39.130 0.00 0.00 0.00 3.60
3494 4133 3.745975 TCACAATTTCGTTTGATCGAGCT 59.254 39.130 0.90 0.00 40.86 4.09
3495 4134 4.084507 CACAATTTCGTTTGATCGAGCTC 58.915 43.478 2.73 2.73 40.86 4.09
3496 4135 3.181530 ACAATTTCGTTTGATCGAGCTCG 60.182 43.478 30.03 30.03 40.86 5.03
3497 4136 0.713883 TTTCGTTTGATCGAGCTCGC 59.286 50.000 30.97 18.37 40.86 5.03
3498 4137 1.076533 TTCGTTTGATCGAGCTCGCC 61.077 55.000 30.97 23.33 40.86 5.54
3499 4138 1.805539 CGTTTGATCGAGCTCGCCA 60.806 57.895 30.97 25.50 39.60 5.69
3500 4139 1.710339 GTTTGATCGAGCTCGCCAC 59.290 57.895 30.97 22.14 39.60 5.01
3501 4140 0.737715 GTTTGATCGAGCTCGCCACT 60.738 55.000 30.97 14.93 39.60 4.00
3514 4153 2.350895 CCACTCCGCCACCATTCA 59.649 61.111 0.00 0.00 0.00 2.57
3516 4155 1.097547 CCACTCCGCCACCATTCATC 61.098 60.000 0.00 0.00 0.00 2.92
3522 4161 1.881973 CCGCCACCATTCATCAATAGG 59.118 52.381 0.00 0.00 0.00 2.57
3524 4163 2.951642 CGCCACCATTCATCAATAGGTT 59.048 45.455 0.00 0.00 0.00 3.50
3533 4172 6.950041 CCATTCATCAATAGGTTGACCCATAT 59.050 38.462 0.00 0.00 46.43 1.78
3547 4186 7.012421 GGTTGACCCATATAGAGAAAATCACAC 59.988 40.741 0.00 0.00 0.00 3.82
3570 4209 3.564053 TTCGTCCCTTAACTTGTTGGT 57.436 42.857 0.00 0.00 0.00 3.67
3571 4210 2.841215 TCGTCCCTTAACTTGTTGGTG 58.159 47.619 0.00 0.00 0.00 4.17
3574 4213 2.890945 GTCCCTTAACTTGTTGGTGCAT 59.109 45.455 0.00 0.00 0.00 3.96
3578 4217 4.522789 CCCTTAACTTGTTGGTGCATTACT 59.477 41.667 0.00 0.00 0.00 2.24
3579 4218 5.708230 CCCTTAACTTGTTGGTGCATTACTA 59.292 40.000 0.00 0.00 0.00 1.82
3580 4219 6.207810 CCCTTAACTTGTTGGTGCATTACTAA 59.792 38.462 0.00 0.00 0.00 2.24
3581 4220 7.305474 CCTTAACTTGTTGGTGCATTACTAAG 58.695 38.462 0.00 0.00 29.73 2.18
3582 4221 4.766404 ACTTGTTGGTGCATTACTAAGC 57.234 40.909 0.00 0.00 29.73 3.09
3583 4222 4.141287 ACTTGTTGGTGCATTACTAAGCA 58.859 39.130 0.00 0.00 38.65 3.91
3594 4233 7.447374 TGCATTACTAAGCACAAAAGTATGT 57.553 32.000 0.00 0.00 35.51 2.29
3595 4234 8.554835 TGCATTACTAAGCACAAAAGTATGTA 57.445 30.769 0.00 0.00 35.51 2.29
3596 4235 9.004717 TGCATTACTAAGCACAAAAGTATGTAA 57.995 29.630 0.00 0.00 35.51 2.41
3597 4236 9.490663 GCATTACTAAGCACAAAAGTATGTAAG 57.509 33.333 0.00 0.00 30.84 2.34
3606 4245 7.040478 AGCACAAAAGTATGTAAGATTTGCTCA 60.040 33.333 0.00 0.00 30.84 4.26
3624 4263 3.935828 GCTCATGTACCTGAAAACCTCTC 59.064 47.826 2.36 0.00 0.00 3.20
3631 4270 4.884668 ACCTGAAAACCTCTCAATACGA 57.115 40.909 0.00 0.00 0.00 3.43
3638 4277 7.608153 TGAAAACCTCTCAATACGATCACTAA 58.392 34.615 0.00 0.00 0.00 2.24
3639 4278 7.759886 TGAAAACCTCTCAATACGATCACTAAG 59.240 37.037 0.00 0.00 0.00 2.18
3647 4286 7.060600 TCAATACGATCACTAAGCACAAAAG 57.939 36.000 0.00 0.00 0.00 2.27
3655 4294 8.110612 CGATCACTAAGCACAAAAGTATGTAAG 58.889 37.037 0.00 0.00 30.84 2.34
3669 4320 6.388619 AGTATGTAAGATTTGTGGTCCCTT 57.611 37.500 0.00 0.00 0.00 3.95
3673 4324 9.269453 GTATGTAAGATTTGTGGTCCCTTATAC 57.731 37.037 0.00 0.00 0.00 1.47
3696 4347 1.323412 CCCTCATACGCTCTAGCACT 58.677 55.000 2.44 0.00 42.21 4.40
3702 4353 2.798689 CGCTCTAGCACTGCGGTA 59.201 61.111 0.00 0.00 45.07 4.02
3704 4355 1.227002 GCTCTAGCACTGCGGTACC 60.227 63.158 0.16 0.16 41.59 3.34
3745 4396 2.178912 TTGCGAAAGACCCCTTGTAG 57.821 50.000 0.00 0.00 31.91 2.74
3746 4397 1.344065 TGCGAAAGACCCCTTGTAGA 58.656 50.000 0.00 0.00 31.91 2.59
3762 4413 0.323178 TAGAGAAGGGAGCCGTCGTT 60.323 55.000 0.00 0.00 37.12 3.85
3771 4422 2.659244 GCCGTCGTTGTTGTCGGA 60.659 61.111 6.63 0.00 44.86 4.55
3777 4428 2.112297 GTTGTTGTCGGAGGCCCA 59.888 61.111 0.00 0.00 0.00 5.36
3795 4446 1.081094 CATGTCGCTGCTCATTGTCA 58.919 50.000 0.00 0.00 0.00 3.58
3829 4480 2.738521 CACCTCGCCACACTTCCG 60.739 66.667 0.00 0.00 0.00 4.30
3850 4501 4.569162 CCGATTTCTTCGTAGGTTATTGCA 59.431 41.667 0.00 0.00 46.65 4.08
3851 4502 5.236478 CCGATTTCTTCGTAGGTTATTGCAT 59.764 40.000 0.00 0.00 46.65 3.96
3859 4510 3.243068 CGTAGGTTATTGCATTTGCCTCC 60.243 47.826 0.00 0.00 41.18 4.30
3885 4536 0.613260 CTCATTCCACGAAGGGGACA 59.387 55.000 0.00 0.00 38.24 4.02
3886 4537 1.003118 CTCATTCCACGAAGGGGACAA 59.997 52.381 0.00 0.00 38.24 3.18
3890 4541 1.003718 CCACGAAGGGGACAAGGTC 60.004 63.158 0.00 0.00 0.00 3.85
3906 4557 4.868026 TCCTTGTGGACAACGTGG 57.132 55.556 0.00 0.00 37.46 4.94
3909 4560 0.661020 CCTTGTGGACAACGTGGAAC 59.339 55.000 0.00 0.00 34.57 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.853555 TTGACGAATTAGTTAATTGCATCAATT 57.146 25.926 9.38 9.38 44.74 2.32
57 58 9.930693 GTATAGATGCAAGCCTAGTTAACTATT 57.069 33.333 15.57 5.09 0.00 1.73
59 60 7.039223 GGGTATAGATGCAAGCCTAGTTAACTA 60.039 40.741 14.52 14.52 0.00 2.24
94 95 3.247006 TCGATCTGCCCTTTTGAGTAC 57.753 47.619 0.00 0.00 0.00 2.73
95 96 3.260884 AGTTCGATCTGCCCTTTTGAGTA 59.739 43.478 0.00 0.00 0.00 2.59
157 158 1.137675 TGAGCGGTCATCATTGAGGAG 59.862 52.381 14.39 0.00 30.85 3.69
298 299 2.394930 ATGCCTACGTACAATGCACA 57.605 45.000 6.51 0.00 34.33 4.57
368 369 7.736447 AGACTGTTTCAAAAGGAATCTACTG 57.264 36.000 0.00 0.00 34.91 2.74
441 445 1.001048 CTGGCATTGACTGTGTTGTGG 60.001 52.381 0.00 0.00 0.00 4.17
461 465 2.042831 AGATTGTCCTTGGCTGCGC 61.043 57.895 0.00 0.00 0.00 6.09
491 495 6.822667 AACATTATTTGATGAGTGCAGTGA 57.177 33.333 0.00 0.00 0.00 3.41
496 500 8.196771 TGGGATAAAACATTATTTGATGAGTGC 58.803 33.333 0.00 0.00 0.00 4.40
516 520 1.696884 TCCGTGCATTGCTATGGGATA 59.303 47.619 10.49 0.00 32.15 2.59
750 772 1.262417 TGGAACTAGCATGTGACGGA 58.738 50.000 0.00 0.00 0.00 4.69
763 785 2.156098 TGGCTGGAGGCTTGGAACT 61.156 57.895 1.53 0.00 41.69 3.01
812 840 2.774815 TGGGGTTGACCACGGATAA 58.225 52.632 2.12 0.00 44.25 1.75
813 841 4.563166 TGGGGTTGACCACGGATA 57.437 55.556 2.12 0.00 44.25 2.59
895 925 1.754803 TCCGTAAGCTCGTCATGGATT 59.245 47.619 0.00 0.00 0.00 3.01
932 963 2.747855 GAGCCACGAAAGCCCCAG 60.748 66.667 0.00 0.00 0.00 4.45
957 988 1.779157 CAACATGCGGAGTATACGTCG 59.221 52.381 13.84 13.84 0.00 5.12
971 1002 0.039256 CTCCCCAACGCAACAACATG 60.039 55.000 0.00 0.00 0.00 3.21
976 1007 0.687920 TGTATCTCCCCAACGCAACA 59.312 50.000 0.00 0.00 0.00 3.33
981 1012 3.889538 TCATCTACTGTATCTCCCCAACG 59.110 47.826 0.00 0.00 0.00 4.10
983 1014 4.840680 CCATCATCTACTGTATCTCCCCAA 59.159 45.833 0.00 0.00 0.00 4.12
985 1016 4.464597 GTCCATCATCTACTGTATCTCCCC 59.535 50.000 0.00 0.00 0.00 4.81
989 1020 5.083122 CCCTGTCCATCATCTACTGTATCT 58.917 45.833 0.00 0.00 0.00 1.98
990 1021 4.221703 CCCCTGTCCATCATCTACTGTATC 59.778 50.000 0.00 0.00 0.00 2.24
991 1022 4.163427 CCCCTGTCCATCATCTACTGTAT 58.837 47.826 0.00 0.00 0.00 2.29
992 1023 3.576861 CCCCTGTCCATCATCTACTGTA 58.423 50.000 0.00 0.00 0.00 2.74
993 1024 2.402564 CCCCTGTCCATCATCTACTGT 58.597 52.381 0.00 0.00 0.00 3.55
994 1025 1.071385 GCCCCTGTCCATCATCTACTG 59.929 57.143 0.00 0.00 0.00 2.74
995 1026 1.428869 GCCCCTGTCCATCATCTACT 58.571 55.000 0.00 0.00 0.00 2.57
996 1027 0.034059 CGCCCCTGTCCATCATCTAC 59.966 60.000 0.00 0.00 0.00 2.59
997 1028 1.121407 CCGCCCCTGTCCATCATCTA 61.121 60.000 0.00 0.00 0.00 1.98
1284 1417 2.045045 TGGATCGGCAAAGCTGGG 60.045 61.111 0.00 0.00 35.34 4.45
1301 1434 1.595382 GAGCAGGCTTGTGTCGTGT 60.595 57.895 0.00 0.00 0.00 4.49
1305 1438 1.505353 GCATGAGCAGGCTTGTGTC 59.495 57.895 0.00 0.00 41.58 3.67
1396 1549 3.874543 ACACGAGAACTTGCAATGTTACA 59.125 39.130 0.00 0.00 34.00 2.41
1759 1937 1.181741 AGAGGAACGTGCTGAGCAGA 61.182 55.000 7.71 0.00 40.08 4.26
2145 2323 1.815421 CCTTCGAACTCCGCCATGG 60.815 63.158 7.63 7.63 38.37 3.66
2152 2330 0.108567 GGAGCTCACCTTCGAACTCC 60.109 60.000 17.19 12.78 40.20 3.85
2443 2991 2.358939 CCTTTGATTTGGCACTGCTC 57.641 50.000 0.00 0.00 0.00 4.26
2458 3024 0.392998 ACGCGATCAAGATGGCCTTT 60.393 50.000 15.93 0.00 39.02 3.11
2482 3048 2.159366 CCTGTCGTAGTAGTCTGCTTGG 60.159 54.545 0.00 0.00 0.00 3.61
2854 3420 1.686587 TCCTCACACTCATTGACGTGT 59.313 47.619 12.97 12.97 44.57 4.49
2863 3429 1.937191 TGCCTACATCCTCACACTCA 58.063 50.000 0.00 0.00 0.00 3.41
2922 3488 3.307242 ACGAGCGCTGTTGATTTCTAATC 59.693 43.478 18.48 0.00 0.00 1.75
2931 3497 0.319469 TTGATGACGAGCGCTGTTGA 60.319 50.000 18.48 4.95 0.00 3.18
2934 3500 1.738099 GGTTGATGACGAGCGCTGT 60.738 57.895 18.48 14.07 0.00 4.40
2935 3501 2.456119 GGGTTGATGACGAGCGCTG 61.456 63.158 18.48 10.31 0.00 5.18
2937 3503 3.554692 CGGGTTGATGACGAGCGC 61.555 66.667 0.00 0.00 0.00 5.92
2938 3504 1.226974 ATCGGGTTGATGACGAGCG 60.227 57.895 0.00 0.00 40.21 5.03
2939 3505 4.835927 ATCGGGTTGATGACGAGC 57.164 55.556 0.00 0.00 40.21 5.03
2956 3522 2.639065 ACTCCAAAAGTTTCTGTCGCA 58.361 42.857 0.00 0.00 33.03 5.10
2957 3523 3.364068 GCTACTCCAAAAGTTTCTGTCGC 60.364 47.826 0.00 0.00 39.55 5.19
2973 3601 6.889019 AATCGCTACAAAAACTAGCTACTC 57.111 37.500 0.00 0.00 35.41 2.59
2974 3602 7.411588 CGAAAATCGCTACAAAAACTAGCTACT 60.412 37.037 0.00 0.00 35.41 2.57
2992 3620 6.815359 AGATTCATCAATCGATCGAAAATCG 58.185 36.000 23.50 11.07 43.05 3.34
3069 3697 1.151668 ATGAGTCGACTGCAAACTGC 58.848 50.000 25.58 6.22 45.29 4.40
3073 3701 4.447724 GTCACTTAATGAGTCGACTGCAAA 59.552 41.667 25.58 10.57 38.28 3.68
3104 3733 4.523083 AGTCACTTGCACTTGAGGTTTAA 58.477 39.130 0.00 0.00 0.00 1.52
3105 3734 4.150897 AGTCACTTGCACTTGAGGTTTA 57.849 40.909 0.00 0.00 0.00 2.01
3106 3735 3.004752 AGTCACTTGCACTTGAGGTTT 57.995 42.857 0.00 0.00 0.00 3.27
3194 3826 6.509386 ACAGGGACGGGGATATTACTATTAT 58.491 40.000 0.00 0.00 0.00 1.28
3210 3842 1.035385 GGGCCCAATAAACAGGGACG 61.035 60.000 19.95 0.00 0.00 4.79
3215 3847 1.554617 CAAAGGGGGCCCAATAAACAG 59.445 52.381 26.86 0.74 38.92 3.16
3224 3856 0.901827 CACAAATACAAAGGGGGCCC 59.098 55.000 15.76 15.76 0.00 5.80
3259 3892 7.849496 TGCATTAACACTTTGCAAGTTAAATG 58.151 30.769 20.01 18.16 42.95 2.32
3274 3907 2.739885 TTGGTGCCATGCATTAACAC 57.260 45.000 12.84 12.84 41.91 3.32
3276 3909 5.625921 AAATTTTGGTGCCATGCATTAAC 57.374 34.783 0.00 0.00 41.91 2.01
3286 3919 3.677596 CCAACGACATAAATTTTGGTGCC 59.322 43.478 0.00 0.00 33.39 5.01
3287 3920 4.551388 TCCAACGACATAAATTTTGGTGC 58.449 39.130 0.00 0.00 38.32 5.01
3301 3934 3.924686 ACTATGTTCAACGATCCAACGAC 59.075 43.478 0.00 0.00 37.03 4.34
3304 3937 4.092968 GGACACTATGTTCAACGATCCAAC 59.907 45.833 0.00 0.00 0.00 3.77
3311 3944 7.869016 ATATTATCGGACACTATGTTCAACG 57.131 36.000 0.00 0.00 0.00 4.10
3382 4019 7.011950 TGCACTCGTATTTAGGGTCATATTTTG 59.988 37.037 0.00 0.00 0.00 2.44
3401 4038 4.688879 TGTCTTGGTTTATTAGTGCACTCG 59.311 41.667 25.56 0.45 0.00 4.18
3402 4039 5.932303 TCTGTCTTGGTTTATTAGTGCACTC 59.068 40.000 25.56 7.61 0.00 3.51
3405 4044 5.012664 TCCTCTGTCTTGGTTTATTAGTGCA 59.987 40.000 0.00 0.00 0.00 4.57
3407 4046 7.979444 TTTCCTCTGTCTTGGTTTATTAGTG 57.021 36.000 0.00 0.00 0.00 2.74
3417 4056 3.304928 GCACAACATTTCCTCTGTCTTGG 60.305 47.826 0.00 0.00 0.00 3.61
3425 4064 2.618241 TCAGTGTGCACAACATTTCCTC 59.382 45.455 23.59 5.59 41.97 3.71
3427 4066 2.098934 TGTCAGTGTGCACAACATTTCC 59.901 45.455 23.59 7.22 41.97 3.13
3428 4067 3.419264 TGTCAGTGTGCACAACATTTC 57.581 42.857 23.59 8.04 41.97 2.17
3429 4068 3.865011 TTGTCAGTGTGCACAACATTT 57.135 38.095 23.59 2.04 41.97 2.32
3430 4069 3.633525 AGATTGTCAGTGTGCACAACATT 59.366 39.130 23.59 17.84 41.97 2.71
3432 4071 2.642427 AGATTGTCAGTGTGCACAACA 58.358 42.857 23.59 19.68 35.37 3.33
3433 4072 4.214119 ACATAGATTGTCAGTGTGCACAAC 59.786 41.667 23.59 17.08 35.37 3.32
3434 4073 4.388485 ACATAGATTGTCAGTGTGCACAA 58.612 39.130 23.59 4.86 36.94 3.33
3435 4074 4.006780 ACATAGATTGTCAGTGTGCACA 57.993 40.909 17.42 17.42 30.89 4.57
3478 4117 0.713883 GCGAGCTCGATCAAACGAAA 59.286 50.000 38.74 0.00 41.67 3.46
3481 4120 1.805539 TGGCGAGCTCGATCAAACG 60.806 57.895 38.74 11.76 43.02 3.60
3482 4121 0.737715 AGTGGCGAGCTCGATCAAAC 60.738 55.000 38.74 24.85 43.02 2.93
3485 4124 2.775856 GGAGTGGCGAGCTCGATCA 61.776 63.158 38.74 29.62 43.02 2.92
3496 4135 3.134127 GAATGGTGGCGGAGTGGC 61.134 66.667 0.00 0.00 45.12 5.01
3497 4136 1.077501 ATGAATGGTGGCGGAGTGG 60.078 57.895 0.00 0.00 0.00 4.00
3498 4137 0.392863 TGATGAATGGTGGCGGAGTG 60.393 55.000 0.00 0.00 0.00 3.51
3499 4138 0.327924 TTGATGAATGGTGGCGGAGT 59.672 50.000 0.00 0.00 0.00 3.85
3500 4139 1.683943 ATTGATGAATGGTGGCGGAG 58.316 50.000 0.00 0.00 0.00 4.63
3501 4140 2.487086 CCTATTGATGAATGGTGGCGGA 60.487 50.000 0.00 0.00 0.00 5.54
3508 4147 4.535781 TGGGTCAACCTATTGATGAATGG 58.464 43.478 0.00 0.00 46.43 3.16
3514 4153 8.742125 TTCTCTATATGGGTCAACCTATTGAT 57.258 34.615 3.17 0.00 46.43 2.57
3516 4155 9.799106 ATTTTCTCTATATGGGTCAACCTATTG 57.201 33.333 3.17 0.00 38.28 1.90
3522 4161 7.254455 CGTGTGATTTTCTCTATATGGGTCAAC 60.254 40.741 0.00 0.00 0.00 3.18
3524 4163 6.097696 TCGTGTGATTTTCTCTATATGGGTCA 59.902 38.462 0.00 0.00 0.00 4.02
3533 4172 5.100259 GGACGAATCGTGTGATTTTCTCTA 58.900 41.667 14.87 0.00 44.79 2.43
3547 4186 3.124636 CCAACAAGTTAAGGGACGAATCG 59.875 47.826 0.00 0.00 0.00 3.34
3570 4209 7.447374 ACATACTTTTGTGCTTAGTAATGCA 57.553 32.000 0.00 0.00 36.79 3.96
3571 4210 9.490663 CTTACATACTTTTGTGCTTAGTAATGC 57.509 33.333 0.00 0.00 0.00 3.56
3578 4217 8.792633 AGCAAATCTTACATACTTTTGTGCTTA 58.207 29.630 0.00 0.00 31.56 3.09
3579 4218 7.661040 AGCAAATCTTACATACTTTTGTGCTT 58.339 30.769 0.00 0.00 31.56 3.91
3580 4219 7.040478 TGAGCAAATCTTACATACTTTTGTGCT 60.040 33.333 0.00 0.00 31.56 4.40
3581 4220 7.083858 TGAGCAAATCTTACATACTTTTGTGC 58.916 34.615 0.00 0.00 31.56 4.57
3582 4221 9.069078 CATGAGCAAATCTTACATACTTTTGTG 57.931 33.333 0.00 0.00 31.56 3.33
3583 4222 8.796475 ACATGAGCAAATCTTACATACTTTTGT 58.204 29.630 0.00 0.00 31.56 2.83
3586 4225 8.893727 GGTACATGAGCAAATCTTACATACTTT 58.106 33.333 0.00 0.00 0.00 2.66
3587 4226 8.267894 AGGTACATGAGCAAATCTTACATACTT 58.732 33.333 0.00 0.00 0.00 2.24
3588 4227 7.712639 CAGGTACATGAGCAAATCTTACATACT 59.287 37.037 0.00 0.00 0.00 2.12
3589 4228 7.710907 TCAGGTACATGAGCAAATCTTACATAC 59.289 37.037 6.03 0.00 0.00 2.39
3590 4229 7.791029 TCAGGTACATGAGCAAATCTTACATA 58.209 34.615 6.03 0.00 0.00 2.29
3591 4230 6.653020 TCAGGTACATGAGCAAATCTTACAT 58.347 36.000 6.03 0.00 0.00 2.29
3592 4231 6.048732 TCAGGTACATGAGCAAATCTTACA 57.951 37.500 6.03 0.00 0.00 2.41
3593 4232 6.985188 TTCAGGTACATGAGCAAATCTTAC 57.015 37.500 10.48 0.00 0.00 2.34
3594 4233 7.094377 GGTTTTCAGGTACATGAGCAAATCTTA 60.094 37.037 10.48 0.00 0.00 2.10
3595 4234 6.294731 GGTTTTCAGGTACATGAGCAAATCTT 60.295 38.462 10.48 0.00 0.00 2.40
3596 4235 5.183904 GGTTTTCAGGTACATGAGCAAATCT 59.816 40.000 10.48 0.00 0.00 2.40
3597 4236 5.183904 AGGTTTTCAGGTACATGAGCAAATC 59.816 40.000 10.48 9.64 0.00 2.17
3600 4239 4.072131 GAGGTTTTCAGGTACATGAGCAA 58.928 43.478 10.48 5.34 0.00 3.91
3606 4245 6.070995 TCGTATTGAGAGGTTTTCAGGTACAT 60.071 38.462 0.00 0.00 0.00 2.29
3624 4263 6.831769 ACTTTTGTGCTTAGTGATCGTATTG 58.168 36.000 0.00 0.00 0.00 1.90
3631 4270 9.672673 ATCTTACATACTTTTGTGCTTAGTGAT 57.327 29.630 0.00 0.00 0.00 3.06
3647 4286 9.269453 GTATAAGGGACCACAAATCTTACATAC 57.731 37.037 0.00 0.00 0.00 2.39
3669 4320 2.039480 AGAGCGTATGAGGGGTCGTATA 59.961 50.000 0.00 0.00 35.89 1.47
3673 4324 0.875728 CTAGAGCGTATGAGGGGTCG 59.124 60.000 0.00 0.00 35.89 4.79
3727 4378 1.275291 CTCTACAAGGGGTCTTTCGCA 59.725 52.381 0.00 0.00 0.00 5.10
3728 4379 1.549170 TCTCTACAAGGGGTCTTTCGC 59.451 52.381 0.00 0.00 0.00 4.70
3729 4380 3.368531 CCTTCTCTACAAGGGGTCTTTCG 60.369 52.174 0.00 0.00 39.60 3.46
3745 4396 1.446272 CAACGACGGCTCCCTTCTC 60.446 63.158 0.00 0.00 0.00 2.87
3746 4397 1.755393 AACAACGACGGCTCCCTTCT 61.755 55.000 0.00 0.00 0.00 2.85
3752 4403 2.654912 CCGACAACAACGACGGCTC 61.655 63.158 0.00 0.00 38.98 4.70
3762 4413 2.350895 CATGGGCCTCCGACAACA 59.649 61.111 4.53 0.00 35.24 3.33
3771 4422 4.479993 GAGCAGCGACATGGGCCT 62.480 66.667 4.53 0.00 0.00 5.19
3777 4428 1.938577 GATGACAATGAGCAGCGACAT 59.061 47.619 2.93 2.93 0.00 3.06
3784 4435 1.083806 GGCGACGATGACAATGAGCA 61.084 55.000 0.00 0.00 0.00 4.26
3829 4480 7.044052 GCAAATGCAATAACCTACGAAGAAATC 60.044 37.037 0.00 0.00 41.59 2.17
3850 4501 0.911769 TGAGTCCATCGGAGGCAAAT 59.088 50.000 0.00 0.00 29.39 2.32
3851 4502 0.911769 ATGAGTCCATCGGAGGCAAA 59.088 50.000 0.00 0.00 29.39 3.68
3890 4541 0.661020 GTTCCACGTTGTCCACAAGG 59.339 55.000 9.96 9.96 44.57 3.61
3894 4545 0.580104 CTTCGTTCCACGTTGTCCAC 59.420 55.000 0.00 0.00 43.14 4.02
3905 4556 2.222217 CGTCGATCCGCTTCGTTCC 61.222 63.158 0.00 0.00 40.03 3.62
3906 4557 3.286669 CGTCGATCCGCTTCGTTC 58.713 61.111 0.00 1.08 40.03 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.