Multiple sequence alignment - TraesCS7B01G022800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G022800 chr7B 100.000 6550 0 0 1 6550 22056433 22062982 0.000000e+00 12096.0
1 TraesCS7B01G022800 chr7B 92.462 1645 85 19 1 1628 21995606 21997228 0.000000e+00 2314.0
2 TraesCS7B01G022800 chr7B 92.420 1649 78 24 3 1628 21942293 21943917 0.000000e+00 2309.0
3 TraesCS7B01G022800 chr7B 91.483 317 16 8 5935 6249 34490728 34490421 6.070000e-115 425.0
4 TraesCS7B01G022800 chr7B 88.652 282 27 4 5936 6215 2943458 2943736 8.140000e-89 339.0
5 TraesCS7B01G022800 chr7B 93.651 126 6 2 4101 4225 523682081 523681957 3.120000e-43 187.0
6 TraesCS7B01G022800 chr7B 94.872 117 5 1 4092 4207 452155259 452155143 1.450000e-41 182.0
7 TraesCS7B01G022800 chr7B 100.000 47 0 0 5187 5233 22061586 22061632 3.250000e-13 87.9
8 TraesCS7B01G022800 chr7B 100.000 47 0 0 5154 5200 22061619 22061665 3.250000e-13 87.9
9 TraesCS7B01G022800 chr7B 97.561 41 0 1 5634 5673 22062030 22062070 1.180000e-07 69.4
10 TraesCS7B01G022800 chr7B 97.561 41 0 1 5598 5638 22062066 22062105 1.180000e-07 69.4
11 TraesCS7B01G022800 chr7A 93.179 4149 179 45 3 4104 80061815 80065906 0.000000e+00 5999.0
12 TraesCS7B01G022800 chr7A 94.679 996 41 8 4206 5200 80065903 80066887 0.000000e+00 1535.0
13 TraesCS7B01G022800 chr7A 85.697 804 65 26 5787 6550 80067284 80068077 0.000000e+00 802.0
14 TraesCS7B01G022800 chr7A 88.855 332 27 7 5936 6266 85958107 85957785 3.680000e-107 399.0
15 TraesCS7B01G022800 chr7A 88.321 274 26 6 5922 6191 64729086 64729357 2.280000e-84 324.0
16 TraesCS7B01G022800 chr7A 84.477 277 13 3 5188 5464 80066842 80067088 5.070000e-61 246.0
17 TraesCS7B01G022800 chr7A 90.588 85 7 1 3980 4064 73752487 73752404 1.930000e-20 111.0
18 TraesCS7B01G022800 chr7D 92.625 3688 162 43 458 4104 75925383 75929001 0.000000e+00 5203.0
19 TraesCS7B01G022800 chr7D 94.887 1017 42 8 4206 5220 75928998 75930006 0.000000e+00 1581.0
20 TraesCS7B01G022800 chr7D 85.818 825 74 22 5755 6549 75930465 75931276 0.000000e+00 835.0
21 TraesCS7B01G022800 chr7D 89.655 406 32 6 4 406 75924641 75925039 5.860000e-140 508.0
22 TraesCS7B01G022800 chr7D 91.343 335 18 8 5935 6266 84796427 84796101 1.300000e-121 448.0
23 TraesCS7B01G022800 chr7D 85.437 412 18 6 5188 5599 75929941 75930310 2.210000e-104 390.0
24 TraesCS7B01G022800 chr7D 87.458 295 28 8 5936 6226 60440281 60440570 1.360000e-86 331.0
25 TraesCS7B01G022800 chr7D 85.911 291 33 7 5936 6225 60579562 60579845 2.970000e-78 303.0
26 TraesCS7B01G022800 chr7D 88.889 90 9 1 3978 4067 427001227 427001139 6.940000e-20 110.0
27 TraesCS7B01G022800 chr5B 97.321 112 3 0 4101 4212 473194831 473194720 2.410000e-44 191.0
28 TraesCS7B01G022800 chr4A 97.345 113 2 1 4100 4211 467233727 467233839 2.410000e-44 191.0
29 TraesCS7B01G022800 chr4A 94.068 118 6 1 4094 4211 550136500 550136384 1.880000e-40 178.0
30 TraesCS7B01G022800 chr4A 92.623 122 7 1 4087 4208 597328023 597328142 2.430000e-39 174.0
31 TraesCS7B01G022800 chr4A 91.667 84 7 0 3980 4063 724857673 724857590 4.150000e-22 117.0
32 TraesCS7B01G022800 chr4A 88.000 100 9 3 3977 4076 429231179 429231275 1.490000e-21 115.0
33 TraesCS7B01G022800 chr2D 95.690 116 5 0 4101 4216 404123315 404123430 3.120000e-43 187.0
34 TraesCS7B01G022800 chr2D 94.915 118 5 1 4094 4211 68867355 68867471 4.030000e-42 183.0
35 TraesCS7B01G022800 chr1B 94.309 123 5 2 4087 4207 8679417 8679539 3.120000e-43 187.0
36 TraesCS7B01G022800 chr1B 92.742 124 7 2 4092 4214 624639854 624639976 1.880000e-40 178.0
37 TraesCS7B01G022800 chr1B 89.412 85 9 0 3980 4064 593785896 593785980 2.500000e-19 108.0
38 TraesCS7B01G022800 chr6B 94.958 119 5 1 4096 4213 37764565 37764447 1.120000e-42 185.0
39 TraesCS7B01G022800 chr6B 93.548 124 6 2 4099 4222 195807165 195807044 4.030000e-42 183.0
40 TraesCS7B01G022800 chr6A 92.742 124 7 2 4093 4215 535140223 535140101 1.880000e-40 178.0
41 TraesCS7B01G022800 chrUn 89.928 139 10 4 4078 4214 91489036 91488900 6.750000e-40 176.0
42 TraesCS7B01G022800 chr5A 91.406 128 8 3 4092 4217 315331265 315331391 8.730000e-39 172.0
43 TraesCS7B01G022800 chr5A 89.412 85 8 1 3980 4064 675451944 675452027 8.980000e-19 106.0
44 TraesCS7B01G022800 chr3B 89.412 85 9 0 3980 4064 132085590 132085506 2.500000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G022800 chr7B 22056433 22062982 6549 False 2482.12 12096 99.0244 1 6550 5 chr7B.!!$F4 6549
1 TraesCS7B01G022800 chr7B 21995606 21997228 1622 False 2314.00 2314 92.4620 1 1628 1 chr7B.!!$F3 1627
2 TraesCS7B01G022800 chr7B 21942293 21943917 1624 False 2309.00 2309 92.4200 3 1628 1 chr7B.!!$F2 1625
3 TraesCS7B01G022800 chr7A 80061815 80068077 6262 False 2145.50 5999 89.5080 3 6550 4 chr7A.!!$F2 6547
4 TraesCS7B01G022800 chr7D 75924641 75931276 6635 False 1703.40 5203 89.6844 4 6549 5 chr7D.!!$F3 6545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 259 0.691904 TCATCCCATGCTGTGTGTCA 59.308 50.000 0.00 0.00 0.00 3.58 F
1006 1332 0.179250 CGTTCCATTTCTCACACGCG 60.179 55.000 3.53 3.53 0.00 6.01 F
1993 2331 1.657538 GCGACTGCTGAAAACGAAGTG 60.658 52.381 0.00 0.00 38.76 3.16 F
2798 3140 1.202927 CCCTGTGTCCTGTCCATTGTT 60.203 52.381 0.00 0.00 0.00 2.83 F
4116 4481 0.038744 AGTTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55 F
5183 5553 0.179215 GCTGCAGATTTCGGACGTTG 60.179 55.000 20.43 0.00 0.00 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 2011 0.456221 ACTATCGCGTCCCTGTCAAG 59.544 55.000 5.77 0.00 0.00 3.02 R
2244 2582 1.144913 ACTGGCTGAAGCTTAACCCAA 59.855 47.619 0.00 0.00 41.70 4.12 R
2823 3165 3.141398 CTGCAGTGCCAGAAAGAAACTA 58.859 45.455 13.72 0.00 34.77 2.24 R
4189 4554 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30 R
5197 5567 0.179215 CAACGTCCGAAATCTGCAGC 60.179 55.000 9.47 0.00 0.00 5.25 R
6362 6861 0.718343 CTGCGCTTCAAGTAGCACTC 59.282 55.000 9.73 0.00 41.28 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 1.120530 TTCTCCCTTCTCCGTATGCC 58.879 55.000 0.00 0.00 0.00 4.40
141 144 1.300931 GGCTCTTGTGTGCTCGACA 60.301 57.895 0.00 0.00 33.63 4.35
251 258 1.065926 TCTCATCCCATGCTGTGTGTC 60.066 52.381 0.00 0.00 0.00 3.67
252 259 0.691904 TCATCCCATGCTGTGTGTCA 59.308 50.000 0.00 0.00 0.00 3.58
333 342 3.932710 TCGCTTTCGACAATATCTTGCTT 59.067 39.130 0.00 0.00 40.21 3.91
526 827 1.454847 CACTCTCTCCCTCCCTCCG 60.455 68.421 0.00 0.00 0.00 4.63
527 828 2.197324 CTCTCTCCCTCCCTCCGG 59.803 72.222 0.00 0.00 0.00 5.14
554 866 9.659830 ATCGATTGAAATATAAAAGTTAACCGC 57.340 29.630 0.88 0.00 0.00 5.68
557 869 6.121613 TGAAATATAAAAGTTAACCGCGGG 57.878 37.500 31.76 11.88 0.00 6.13
569 881 2.186160 CCGCGGGATAGCAAATGCA 61.186 57.895 20.10 0.00 45.16 3.96
572 884 1.468908 CGCGGGATAGCAAATGCAAAA 60.469 47.619 8.28 0.00 45.16 2.44
573 885 2.615869 GCGGGATAGCAAATGCAAAAA 58.384 42.857 8.28 0.00 45.16 1.94
635 950 7.233389 TCCAATTATTTTTGATCCGGACAAA 57.767 32.000 20.99 20.99 35.81 2.83
636 951 7.671302 TCCAATTATTTTTGATCCGGACAAAA 58.329 30.769 26.88 26.88 42.72 2.44
776 1100 2.362889 CAACCCCATGTGCTCCCC 60.363 66.667 0.00 0.00 0.00 4.81
1006 1332 0.179250 CGTTCCATTTCTCACACGCG 60.179 55.000 3.53 3.53 0.00 6.01
1018 1345 2.341101 ACACGCGTTCGATCTCCCT 61.341 57.895 10.22 0.00 39.41 4.20
1672 2009 6.779860 TGACTAATAGGCCTTTTGTCTTTCT 58.220 36.000 25.95 5.03 0.00 2.52
1674 2011 7.390718 TGACTAATAGGCCTTTTGTCTTTCTTC 59.609 37.037 25.95 11.96 0.00 2.87
1827 2164 1.933853 ACGAGGTATGCGAAATGCTTC 59.066 47.619 0.00 0.00 46.63 3.86
1868 2206 3.441572 CAGGTTATGTTTTGCTCTCTGGG 59.558 47.826 0.00 0.00 0.00 4.45
1892 2230 7.749126 GGGTAAAAACTTGAGAATGACGTTATG 59.251 37.037 0.00 0.00 0.00 1.90
1898 2236 6.913170 ACTTGAGAATGACGTTATGCATTTT 58.087 32.000 3.54 0.00 35.05 1.82
1903 2241 6.779117 AGAATGACGTTATGCATTTTCTCAG 58.221 36.000 3.54 0.00 35.05 3.35
1913 2251 8.816144 GTTATGCATTTTCTCAGTTTTGTTGAA 58.184 29.630 3.54 0.00 0.00 2.69
1915 2253 6.162079 TGCATTTTCTCAGTTTTGTTGAACA 58.838 32.000 0.00 0.00 31.94 3.18
1993 2331 1.657538 GCGACTGCTGAAAACGAAGTG 60.658 52.381 0.00 0.00 38.76 3.16
2160 2498 2.489938 TCCTTATTTGCGTTCTGGCT 57.510 45.000 0.00 0.00 0.00 4.75
2191 2529 7.933396 TGCCATGATTTGATGAGTAACTTATG 58.067 34.615 0.00 0.00 0.00 1.90
2244 2582 8.860088 AGTTGCTACCAAAAAGAAAGATAATGT 58.140 29.630 0.00 0.00 31.68 2.71
2259 2597 7.396540 AAGATAATGTTGGGTTAAGCTTCAG 57.603 36.000 0.00 0.00 0.00 3.02
2260 2598 3.942130 AATGTTGGGTTAAGCTTCAGC 57.058 42.857 0.00 0.60 42.49 4.26
2494 2834 5.811796 TTAAGTTGCAGGTTAGTACTCCA 57.188 39.130 0.00 0.00 0.00 3.86
2504 2844 4.597940 AGGTTAGTACTCCAAGCCTTTCTT 59.402 41.667 0.00 0.00 34.78 2.52
2507 2847 6.938596 GGTTAGTACTCCAAGCCTTTCTTAAA 59.061 38.462 0.00 0.00 32.74 1.52
2508 2848 7.610692 GGTTAGTACTCCAAGCCTTTCTTAAAT 59.389 37.037 0.00 0.00 32.74 1.40
2509 2849 9.662947 GTTAGTACTCCAAGCCTTTCTTAAATA 57.337 33.333 0.00 0.00 32.74 1.40
2533 2873 4.568152 AACACAAGTGCACTTTGGATAC 57.432 40.909 29.23 0.00 33.11 2.24
2756 3098 4.321230 GGATTTAAGACAAAGGTGTGCAGG 60.321 45.833 0.00 0.00 38.41 4.85
2782 3124 8.887717 GTTTGATATAAATAGATAGCTGCCCTG 58.112 37.037 0.00 0.00 0.00 4.45
2785 3127 5.832539 ATAAATAGATAGCTGCCCTGTGT 57.167 39.130 0.00 0.00 0.00 3.72
2786 3128 3.760580 AATAGATAGCTGCCCTGTGTC 57.239 47.619 0.00 0.00 0.00 3.67
2798 3140 1.202927 CCCTGTGTCCTGTCCATTGTT 60.203 52.381 0.00 0.00 0.00 2.83
3108 3451 5.172687 TCCAGGTTACAGCATTTGATACA 57.827 39.130 0.00 0.00 0.00 2.29
3335 3678 9.914923 GTAAGCTTTAATTTTGTCAAGTTTTGG 57.085 29.630 3.20 0.00 0.00 3.28
3336 3679 8.560355 AAGCTTTAATTTTGTCAAGTTTTGGT 57.440 26.923 0.00 0.00 0.00 3.67
3384 3728 4.463186 TCAAAGTCCCTAGCAGTCTAACTC 59.537 45.833 0.00 0.00 0.00 3.01
3622 3979 0.329596 GCCCTCACAATGTCCTCCTT 59.670 55.000 0.00 0.00 0.00 3.36
3960 4324 4.595986 ACTTTCAACCTTGTACCACAGTT 58.404 39.130 0.00 0.00 0.00 3.16
4104 4469 9.726438 ATTGGGATTATGTGCTATTAGTTACTC 57.274 33.333 0.00 0.00 0.00 2.59
4105 4470 7.676947 TGGGATTATGTGCTATTAGTTACTCC 58.323 38.462 0.00 0.00 0.00 3.85
4106 4471 7.104290 GGGATTATGTGCTATTAGTTACTCCC 58.896 42.308 0.00 0.00 0.00 4.30
4107 4472 7.038231 GGGATTATGTGCTATTAGTTACTCCCT 60.038 40.741 12.72 0.00 34.54 4.20
4108 4473 8.035984 GGATTATGTGCTATTAGTTACTCCCTC 58.964 40.741 0.00 0.00 0.00 4.30
4109 4474 5.810080 ATGTGCTATTAGTTACTCCCTCC 57.190 43.478 0.00 0.00 0.00 4.30
4110 4475 3.635373 TGTGCTATTAGTTACTCCCTCCG 59.365 47.826 0.00 0.00 0.00 4.63
4111 4476 3.635836 GTGCTATTAGTTACTCCCTCCGT 59.364 47.826 0.00 0.00 0.00 4.69
4112 4477 4.099113 GTGCTATTAGTTACTCCCTCCGTT 59.901 45.833 0.00 0.00 0.00 4.44
4113 4478 4.340381 TGCTATTAGTTACTCCCTCCGTTC 59.660 45.833 0.00 0.00 0.00 3.95
4114 4479 4.556302 GCTATTAGTTACTCCCTCCGTTCG 60.556 50.000 0.00 0.00 0.00 3.95
4115 4480 1.755179 TAGTTACTCCCTCCGTTCGG 58.245 55.000 4.74 4.74 0.00 4.30
4116 4481 0.038744 AGTTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
4117 4482 0.890683 GTTACTCCCTCCGTTCGGAA 59.109 55.000 14.79 0.04 33.41 4.30
4118 4483 1.479730 GTTACTCCCTCCGTTCGGAAT 59.520 52.381 14.79 2.09 33.41 3.01
4119 4484 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
4120 4485 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4121 4486 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4122 4487 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4123 4488 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4124 4489 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4125 4490 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4126 4491 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4127 4492 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
4128 4493 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
4129 4494 3.256383 TCCGTTCGGAATTACTTGTCTCA 59.744 43.478 11.66 0.00 0.00 3.27
4130 4495 3.612860 CCGTTCGGAATTACTTGTCTCAG 59.387 47.826 5.19 0.00 0.00 3.35
4131 4496 4.482386 CGTTCGGAATTACTTGTCTCAGA 58.518 43.478 0.00 0.00 0.00 3.27
4132 4497 4.921515 CGTTCGGAATTACTTGTCTCAGAA 59.078 41.667 0.00 0.00 0.00 3.02
4133 4498 5.404366 CGTTCGGAATTACTTGTCTCAGAAA 59.596 40.000 0.00 0.00 0.00 2.52
4134 4499 6.591261 GTTCGGAATTACTTGTCTCAGAAAC 58.409 40.000 0.00 0.00 0.00 2.78
4135 4500 4.921515 TCGGAATTACTTGTCTCAGAAACG 59.078 41.667 0.00 0.00 0.00 3.60
4136 4501 4.091509 CGGAATTACTTGTCTCAGAAACGG 59.908 45.833 0.00 0.00 0.00 4.44
4137 4502 5.235516 GGAATTACTTGTCTCAGAAACGGA 58.764 41.667 0.00 0.00 0.00 4.69
4138 4503 5.875359 GGAATTACTTGTCTCAGAAACGGAT 59.125 40.000 0.00 0.00 0.00 4.18
4139 4504 6.183360 GGAATTACTTGTCTCAGAAACGGATG 60.183 42.308 0.00 0.00 0.00 3.51
4140 4505 3.753294 ACTTGTCTCAGAAACGGATGT 57.247 42.857 0.00 0.00 0.00 3.06
4141 4506 4.866508 ACTTGTCTCAGAAACGGATGTA 57.133 40.909 0.00 0.00 0.00 2.29
4142 4507 5.407407 ACTTGTCTCAGAAACGGATGTAT 57.593 39.130 0.00 0.00 0.00 2.29
4143 4508 5.411781 ACTTGTCTCAGAAACGGATGTATC 58.588 41.667 0.00 0.00 0.00 2.24
4144 4509 5.186021 ACTTGTCTCAGAAACGGATGTATCT 59.814 40.000 0.00 0.00 0.00 1.98
4145 4510 6.377429 ACTTGTCTCAGAAACGGATGTATCTA 59.623 38.462 0.00 0.00 0.00 1.98
4146 4511 6.378710 TGTCTCAGAAACGGATGTATCTAG 57.621 41.667 0.00 0.00 0.00 2.43
4147 4512 6.120220 TGTCTCAGAAACGGATGTATCTAGA 58.880 40.000 0.00 0.00 0.00 2.43
4148 4513 6.602009 TGTCTCAGAAACGGATGTATCTAGAA 59.398 38.462 0.00 0.00 0.00 2.10
4149 4514 6.913673 GTCTCAGAAACGGATGTATCTAGAAC 59.086 42.308 0.00 0.00 0.00 3.01
4150 4515 6.829298 TCTCAGAAACGGATGTATCTAGAACT 59.171 38.462 0.00 0.00 0.00 3.01
4151 4516 7.991460 TCTCAGAAACGGATGTATCTAGAACTA 59.009 37.037 0.00 0.00 0.00 2.24
4152 4517 8.515695 TCAGAAACGGATGTATCTAGAACTAA 57.484 34.615 0.00 0.00 0.00 2.24
4153 4518 8.963725 TCAGAAACGGATGTATCTAGAACTAAA 58.036 33.333 0.00 0.00 0.00 1.85
4154 4519 9.582431 CAGAAACGGATGTATCTAGAACTAAAA 57.418 33.333 0.00 0.00 0.00 1.52
4158 4523 9.674824 AACGGATGTATCTAGAACTAAAATACG 57.325 33.333 0.00 0.00 0.00 3.06
4159 4524 8.844244 ACGGATGTATCTAGAACTAAAATACGT 58.156 33.333 0.00 0.00 0.00 3.57
4160 4525 9.327529 CGGATGTATCTAGAACTAAAATACGTC 57.672 37.037 17.13 17.13 37.78 4.34
4178 4543 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
4179 4544 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
4180 4545 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
4181 4546 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
4182 4547 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
4183 4548 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
4184 4549 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
4185 4550 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
4186 4551 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
4187 4552 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
4188 4553 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
4189 4554 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
4190 4555 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
4191 4556 3.863424 TCCATTTCTGCGACGAGTAATTC 59.137 43.478 0.00 0.00 0.00 2.17
4192 4557 3.001330 CCATTTCTGCGACGAGTAATTCC 59.999 47.826 0.00 0.00 0.00 3.01
4193 4558 1.904144 TTCTGCGACGAGTAATTCCG 58.096 50.000 0.00 0.00 0.00 4.30
4194 4559 1.089112 TCTGCGACGAGTAATTCCGA 58.911 50.000 0.00 0.00 0.00 4.55
4195 4560 1.469703 TCTGCGACGAGTAATTCCGAA 59.530 47.619 0.00 0.00 0.00 4.30
4196 4561 1.582502 CTGCGACGAGTAATTCCGAAC 59.417 52.381 0.00 0.00 0.00 3.95
4197 4562 0.564767 GCGACGAGTAATTCCGAACG 59.435 55.000 0.00 0.00 34.66 3.95
4198 4563 1.186030 CGACGAGTAATTCCGAACGG 58.814 55.000 6.94 6.94 0.00 4.44
4199 4564 1.202065 CGACGAGTAATTCCGAACGGA 60.202 52.381 12.04 12.04 43.52 4.69
4200 4565 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
4201 4566 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
4202 4567 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
4203 4568 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
4204 4569 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4205 4570 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
4291 4656 7.128331 CGTTATCTGTTGGATTGCTGATTTAG 58.872 38.462 0.00 0.00 35.98 1.85
4316 4681 8.889717 AGTTAACTATTGTTGGAATTATGTCCG 58.110 33.333 6.26 0.00 40.96 4.79
4329 4694 6.445357 AATTATGTCCGTTGAATTACCACC 57.555 37.500 0.00 0.00 0.00 4.61
4600 4967 5.070770 AGTTTGTTGTTCACTGCAAATGA 57.929 34.783 0.00 0.00 34.09 2.57
4662 5029 8.733857 AAAGAATAAGCAGAAAAATGACTTCG 57.266 30.769 0.00 0.00 0.00 3.79
4742 5112 5.104652 AGGCTAACCGCTATAAGGAAGAAAA 60.105 40.000 1.29 0.00 42.76 2.29
4743 5113 5.236695 GGCTAACCGCTATAAGGAAGAAAAG 59.763 44.000 1.29 0.00 39.13 2.27
4744 5114 5.277393 GCTAACCGCTATAAGGAAGAAAAGC 60.277 44.000 1.29 0.00 35.14 3.51
4746 5116 4.844884 ACCGCTATAAGGAAGAAAAGCTT 58.155 39.130 0.00 0.00 40.25 3.74
4748 5118 6.412214 ACCGCTATAAGGAAGAAAAGCTTAA 58.588 36.000 0.00 0.00 36.83 1.85
4749 5119 7.054751 ACCGCTATAAGGAAGAAAAGCTTAAT 58.945 34.615 0.00 0.00 36.83 1.40
4750 5120 7.012421 ACCGCTATAAGGAAGAAAAGCTTAATG 59.988 37.037 0.00 0.00 36.83 1.90
4751 5121 7.226720 CCGCTATAAGGAAGAAAAGCTTAATGA 59.773 37.037 0.00 0.00 36.83 2.57
4752 5122 8.279103 CGCTATAAGGAAGAAAAGCTTAATGAG 58.721 37.037 0.00 0.00 36.83 2.90
4755 5125 8.870075 ATAAGGAAGAAAAGCTTAATGAGTGT 57.130 30.769 0.00 0.00 36.83 3.55
4865 5235 0.255890 GCTGGACCCTGGAAGCATAA 59.744 55.000 0.00 0.00 35.69 1.90
4905 5275 8.150945 TGCTGAATGAATAGATCTACTAAACCC 58.849 37.037 4.10 0.00 34.56 4.11
5070 5440 2.109425 AAGTTACCCTTCGCCATGTC 57.891 50.000 0.00 0.00 0.00 3.06
5153 5523 3.264947 CTGAAAGACATGGCGAGATTCA 58.735 45.455 10.36 10.36 34.07 2.57
5165 5535 2.543430 GCGAGATTCATCAAGGAGAAGC 59.457 50.000 0.00 0.00 0.00 3.86
5166 5536 3.740764 GCGAGATTCATCAAGGAGAAGCT 60.741 47.826 0.00 0.00 42.56 3.74
5167 5537 3.803231 CGAGATTCATCAAGGAGAAGCTG 59.197 47.826 0.00 0.00 40.24 4.24
5168 5538 3.543665 AGATTCATCAAGGAGAAGCTGC 58.456 45.455 0.00 0.00 38.87 5.25
5169 5539 2.865119 TTCATCAAGGAGAAGCTGCA 57.135 45.000 1.02 0.00 0.00 4.41
5170 5540 2.398252 TCATCAAGGAGAAGCTGCAG 57.602 50.000 10.11 10.11 0.00 4.41
5171 5541 1.904537 TCATCAAGGAGAAGCTGCAGA 59.095 47.619 20.43 0.00 0.00 4.26
5172 5542 2.504585 TCATCAAGGAGAAGCTGCAGAT 59.495 45.455 20.43 8.90 0.00 2.90
5173 5543 3.054582 TCATCAAGGAGAAGCTGCAGATT 60.055 43.478 18.77 18.77 0.00 2.40
5174 5544 3.430042 TCAAGGAGAAGCTGCAGATTT 57.570 42.857 19.75 11.14 0.00 2.17
5175 5545 3.341823 TCAAGGAGAAGCTGCAGATTTC 58.658 45.455 19.75 18.98 0.00 2.17
5176 5546 2.021355 AGGAGAAGCTGCAGATTTCG 57.979 50.000 19.75 0.00 0.00 3.46
5177 5547 1.012841 GGAGAAGCTGCAGATTTCGG 58.987 55.000 19.75 0.00 0.00 4.30
5178 5548 1.406069 GGAGAAGCTGCAGATTTCGGA 60.406 52.381 19.75 0.00 0.00 4.55
5179 5549 1.663135 GAGAAGCTGCAGATTTCGGAC 59.337 52.381 19.75 5.41 0.00 4.79
5180 5550 0.371645 GAAGCTGCAGATTTCGGACG 59.628 55.000 19.75 0.00 0.00 4.79
5181 5551 0.320771 AAGCTGCAGATTTCGGACGT 60.321 50.000 20.43 0.00 0.00 4.34
5182 5552 0.320771 AGCTGCAGATTTCGGACGTT 60.321 50.000 20.43 0.00 0.00 3.99
5183 5553 0.179215 GCTGCAGATTTCGGACGTTG 60.179 55.000 20.43 0.00 0.00 4.10
5184 5554 1.428448 CTGCAGATTTCGGACGTTGA 58.572 50.000 8.42 0.00 0.00 3.18
5185 5555 1.798223 CTGCAGATTTCGGACGTTGAA 59.202 47.619 8.42 0.00 0.00 2.69
5186 5556 2.214347 TGCAGATTTCGGACGTTGAAA 58.786 42.857 16.15 16.15 39.45 2.69
5187 5557 2.811431 TGCAGATTTCGGACGTTGAAAT 59.189 40.909 22.17 22.17 45.95 2.17
5192 5562 3.889196 TTTCGGACGTTGAAATCAAGG 57.111 42.857 12.81 12.81 44.57 3.61
5193 5563 2.823924 TCGGACGTTGAAATCAAGGA 57.176 45.000 19.35 0.00 42.45 3.36
5194 5564 2.683968 TCGGACGTTGAAATCAAGGAG 58.316 47.619 19.35 11.44 42.45 3.69
5195 5565 2.297880 TCGGACGTTGAAATCAAGGAGA 59.702 45.455 19.35 13.04 42.45 3.71
5196 5566 3.064207 CGGACGTTGAAATCAAGGAGAA 58.936 45.455 19.35 0.00 42.45 2.87
5197 5567 3.123621 CGGACGTTGAAATCAAGGAGAAG 59.876 47.826 19.35 6.82 42.45 2.85
5215 5585 0.320771 AGCTGCAGATTTCGGACGTT 60.321 50.000 20.43 0.00 0.00 3.99
5245 5615 2.971307 GAGAAGCTCCAAACTCCTGAG 58.029 52.381 0.00 0.00 0.00 3.35
5292 5662 7.287696 TGACAATGTCAAGGATGAGCTATAGTA 59.712 37.037 14.37 0.00 39.78 1.82
5295 5665 8.530311 CAATGTCAAGGATGAGCTATAGTAGAT 58.470 37.037 0.84 0.00 35.88 1.98
5301 5671 6.934056 AGGATGAGCTATAGTAGATTTGCTG 58.066 40.000 0.84 0.00 0.00 4.41
5332 5702 1.791103 CTGGGCGCGTTGAAGGAAAA 61.791 55.000 8.43 0.00 0.00 2.29
5333 5703 1.175983 TGGGCGCGTTGAAGGAAAAT 61.176 50.000 8.43 0.00 0.00 1.82
5334 5704 0.732538 GGGCGCGTTGAAGGAAAATG 60.733 55.000 8.43 0.00 0.00 2.32
5335 5705 0.239879 GGCGCGTTGAAGGAAAATGA 59.760 50.000 8.43 0.00 0.00 2.57
5336 5706 1.327507 GCGCGTTGAAGGAAAATGAC 58.672 50.000 8.43 0.00 0.00 3.06
5337 5707 1.334599 GCGCGTTGAAGGAAAATGACA 60.335 47.619 8.43 0.00 0.00 3.58
5338 5708 2.574322 CGCGTTGAAGGAAAATGACAG 58.426 47.619 0.00 0.00 0.00 3.51
5339 5709 2.319472 GCGTTGAAGGAAAATGACAGC 58.681 47.619 0.00 0.00 0.00 4.40
5340 5710 2.574322 CGTTGAAGGAAAATGACAGCG 58.426 47.619 0.00 0.00 0.00 5.18
5341 5711 2.032030 CGTTGAAGGAAAATGACAGCGT 60.032 45.455 0.00 0.00 32.49 5.07
5342 5712 3.185594 CGTTGAAGGAAAATGACAGCGTA 59.814 43.478 0.00 0.00 32.49 4.42
5343 5713 4.142902 CGTTGAAGGAAAATGACAGCGTAT 60.143 41.667 0.00 0.00 32.49 3.06
5344 5714 4.944962 TGAAGGAAAATGACAGCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
5346 5716 4.154015 TGAAGGAAAATGACAGCGTATGTG 59.846 41.667 0.00 0.00 44.17 3.21
5347 5717 2.420022 AGGAAAATGACAGCGTATGTGC 59.580 45.455 0.00 0.00 44.17 4.57
5348 5718 2.430956 GAAAATGACAGCGTATGTGCG 58.569 47.619 0.00 0.00 44.17 5.34
5349 5719 1.438651 AAATGACAGCGTATGTGCGT 58.561 45.000 0.00 0.00 44.17 5.24
5350 5720 1.438651 AATGACAGCGTATGTGCGTT 58.561 45.000 0.00 0.00 44.17 4.84
5351 5721 0.721154 ATGACAGCGTATGTGCGTTG 59.279 50.000 5.88 5.88 44.17 4.10
5352 5722 1.225745 GACAGCGTATGTGCGTTGC 60.226 57.895 7.19 0.00 44.17 4.17
5353 5723 1.626654 GACAGCGTATGTGCGTTGCT 61.627 55.000 7.19 0.00 44.17 3.91
5354 5724 1.225827 CAGCGTATGTGCGTTGCTG 60.226 57.895 0.00 0.00 45.88 4.41
5355 5725 1.667830 AGCGTATGTGCGTTGCTGT 60.668 52.632 0.00 0.00 40.67 4.40
5356 5726 1.509787 GCGTATGTGCGTTGCTGTG 60.510 57.895 0.00 0.00 0.00 3.66
5357 5727 1.132436 CGTATGTGCGTTGCTGTGG 59.868 57.895 0.00 0.00 0.00 4.17
5358 5728 1.154225 GTATGTGCGTTGCTGTGGC 60.154 57.895 0.00 0.00 39.26 5.01
5389 5759 1.020437 GCATGGCCTTGTAGAGAAGC 58.980 55.000 19.05 0.00 0.00 3.86
5417 5787 1.556451 GTAGGGGTTGGTCACGGTTAT 59.444 52.381 0.00 0.00 0.00 1.89
5419 5789 1.556451 AGGGGTTGGTCACGGTTATAC 59.444 52.381 0.00 0.00 0.00 1.47
5420 5790 1.278699 GGGGTTGGTCACGGTTATACA 59.721 52.381 0.00 0.00 0.00 2.29
5465 5835 9.797642 AAACATATATGATGATGTACCACATGT 57.202 29.630 19.63 0.00 39.27 3.21
5466 5836 9.797642 AACATATATGATGATGTACCACATGTT 57.202 29.630 19.63 0.00 39.27 2.71
5467 5837 9.440773 ACATATATGATGATGTACCACATGTTC 57.559 33.333 19.63 0.00 39.27 3.18
5468 5838 9.662947 CATATATGATGATGTACCACATGTTCT 57.337 33.333 6.92 0.00 39.27 3.01
5471 5841 7.792374 ATGATGATGTACCACATGTTCTAAC 57.208 36.000 0.00 0.00 39.27 2.34
5472 5842 6.706295 TGATGATGTACCACATGTTCTAACA 58.294 36.000 0.00 0.00 39.27 2.41
5473 5843 6.593770 TGATGATGTACCACATGTTCTAACAC 59.406 38.462 0.00 0.00 39.27 3.32
5474 5844 4.926832 TGATGTACCACATGTTCTAACACG 59.073 41.667 0.00 0.00 39.27 4.49
5475 5845 4.325028 TGTACCACATGTTCTAACACGT 57.675 40.909 0.00 0.00 42.51 4.49
5476 5846 4.300803 TGTACCACATGTTCTAACACGTC 58.699 43.478 0.00 0.00 42.51 4.34
5477 5847 3.462483 ACCACATGTTCTAACACGTCA 57.538 42.857 0.00 0.00 42.51 4.35
5478 5848 3.390135 ACCACATGTTCTAACACGTCAG 58.610 45.455 0.00 0.00 42.51 3.51
5479 5849 3.181469 ACCACATGTTCTAACACGTCAGT 60.181 43.478 0.00 0.00 42.51 3.41
5480 5850 3.807622 CCACATGTTCTAACACGTCAGTT 59.192 43.478 0.00 0.00 42.51 3.16
5481 5851 4.318760 CCACATGTTCTAACACGTCAGTTG 60.319 45.833 0.00 0.00 42.51 3.16
5482 5852 3.807622 ACATGTTCTAACACGTCAGTTGG 59.192 43.478 0.00 0.00 42.51 3.77
5483 5853 2.206750 TGTTCTAACACGTCAGTTGGC 58.793 47.619 1.76 0.00 33.17 4.52
5484 5854 2.206750 GTTCTAACACGTCAGTTGGCA 58.793 47.619 1.76 0.00 33.07 4.92
5485 5855 2.605837 TCTAACACGTCAGTTGGCAA 57.394 45.000 0.00 0.00 33.07 4.52
5486 5856 3.120321 TCTAACACGTCAGTTGGCAAT 57.880 42.857 1.92 0.00 33.07 3.56
5487 5857 2.805671 TCTAACACGTCAGTTGGCAATG 59.194 45.455 1.92 3.28 33.07 2.82
5488 5858 1.388547 AACACGTCAGTTGGCAATGT 58.611 45.000 1.92 0.00 0.00 2.71
5489 5859 2.248280 ACACGTCAGTTGGCAATGTA 57.752 45.000 1.92 0.00 0.00 2.29
5490 5860 2.778299 ACACGTCAGTTGGCAATGTAT 58.222 42.857 1.92 0.00 0.00 2.29
5491 5861 2.483877 ACACGTCAGTTGGCAATGTATG 59.516 45.455 1.92 0.76 0.00 2.39
5492 5862 2.083774 ACGTCAGTTGGCAATGTATGG 58.916 47.619 1.92 0.00 0.00 2.74
5493 5863 2.083774 CGTCAGTTGGCAATGTATGGT 58.916 47.619 1.92 0.00 0.00 3.55
5494 5864 2.159531 CGTCAGTTGGCAATGTATGGTG 60.160 50.000 1.92 0.00 0.00 4.17
5495 5865 2.819608 GTCAGTTGGCAATGTATGGTGT 59.180 45.455 1.92 0.00 0.00 4.16
5496 5866 4.006989 GTCAGTTGGCAATGTATGGTGTA 58.993 43.478 1.92 0.00 0.00 2.90
5497 5867 4.006989 TCAGTTGGCAATGTATGGTGTAC 58.993 43.478 1.92 0.00 0.00 2.90
5498 5868 3.128589 CAGTTGGCAATGTATGGTGTACC 59.871 47.826 1.92 0.00 0.00 3.34
5599 6008 5.220989 GCATGAATATTGAAGCTCAAGCAGA 60.221 40.000 4.59 0.00 40.05 4.26
5600 6009 6.515200 GCATGAATATTGAAGCTCAAGCAGAT 60.515 38.462 4.59 0.00 40.05 2.90
5601 6010 7.426410 CATGAATATTGAAGCTCAAGCAGATT 58.574 34.615 4.59 0.00 40.05 2.40
5602 6011 7.400599 TGAATATTGAAGCTCAAGCAGATTT 57.599 32.000 4.59 0.00 40.05 2.17
5603 6012 7.833786 TGAATATTGAAGCTCAAGCAGATTTT 58.166 30.769 4.59 0.00 40.05 1.82
5604 6013 7.972277 TGAATATTGAAGCTCAAGCAGATTTTC 59.028 33.333 4.59 0.00 40.05 2.29
5605 6014 5.979288 ATTGAAGCTCAAGCAGATTTTCT 57.021 34.783 4.59 0.00 40.05 2.52
5606 6015 8.743085 ATATTGAAGCTCAAGCAGATTTTCTA 57.257 30.769 4.59 0.00 40.05 2.10
5607 6016 6.882610 TTGAAGCTCAAGCAGATTTTCTAA 57.117 33.333 4.59 0.00 45.16 2.10
5608 6017 6.882610 TGAAGCTCAAGCAGATTTTCTAAA 57.117 33.333 4.59 0.00 45.16 1.85
5609 6018 7.275888 TGAAGCTCAAGCAGATTTTCTAAAA 57.724 32.000 4.59 0.00 45.16 1.52
5610 6019 7.889469 TGAAGCTCAAGCAGATTTTCTAAAAT 58.111 30.769 4.59 0.37 45.16 1.82
5611 6020 7.811236 TGAAGCTCAAGCAGATTTTCTAAAATG 59.189 33.333 5.44 0.00 45.16 2.32
5612 6021 7.224522 AGCTCAAGCAGATTTTCTAAAATGT 57.775 32.000 5.44 0.00 45.16 2.71
5613 6022 7.664758 AGCTCAAGCAGATTTTCTAAAATGTT 58.335 30.769 5.44 0.00 45.16 2.71
5614 6023 7.597743 AGCTCAAGCAGATTTTCTAAAATGTTG 59.402 33.333 5.44 5.48 45.16 3.33
5615 6024 7.148689 GCTCAAGCAGATTTTCTAAAATGTTGG 60.149 37.037 5.44 0.00 38.61 3.77
5616 6025 7.950512 TCAAGCAGATTTTCTAAAATGTTGGA 58.049 30.769 5.44 0.00 38.64 3.53
5617 6026 8.587608 TCAAGCAGATTTTCTAAAATGTTGGAT 58.412 29.630 5.44 0.00 38.64 3.41
5618 6027 9.859427 CAAGCAGATTTTCTAAAATGTTGGATA 57.141 29.630 5.44 0.00 38.64 2.59
5621 6030 9.807649 GCAGATTTTCTAAAATGTTGGATATGT 57.192 29.630 5.44 0.00 38.64 2.29
5686 6095 8.657074 ATGAGAATGATTGCAATTTATGTTGG 57.343 30.769 14.33 0.00 0.00 3.77
5687 6096 7.042950 TGAGAATGATTGCAATTTATGTTGGG 58.957 34.615 14.33 0.00 0.00 4.12
5733 6143 5.850557 TTCATGAGAGTTTGGCTTCAAAA 57.149 34.783 0.00 0.00 41.43 2.44
5734 6144 5.186996 TCATGAGAGTTTGGCTTCAAAAC 57.813 39.130 0.00 0.00 41.43 2.43
5738 6148 3.885901 GAGAGTTTGGCTTCAAAACTCCT 59.114 43.478 19.95 11.03 41.43 3.69
5758 6168 5.970317 CCTTATAAAGGTCCAACGGTTTT 57.030 39.130 0.00 0.00 43.95 2.43
5761 6171 6.239092 CCTTATAAAGGTCCAACGGTTTTGTT 60.239 38.462 0.00 0.00 43.95 2.83
5762 6172 7.040548 CCTTATAAAGGTCCAACGGTTTTGTTA 60.041 37.037 0.00 0.00 43.95 2.41
5763 6173 6.904463 ATAAAGGTCCAACGGTTTTGTTAT 57.096 33.333 0.00 0.00 0.00 1.89
5764 6174 5.601583 AAAGGTCCAACGGTTTTGTTATT 57.398 34.783 0.00 0.00 0.00 1.40
5765 6175 5.601583 AAGGTCCAACGGTTTTGTTATTT 57.398 34.783 0.00 0.00 0.00 1.40
5766 6176 6.712179 AAGGTCCAACGGTTTTGTTATTTA 57.288 33.333 0.00 0.00 0.00 1.40
5767 6177 6.712179 AGGTCCAACGGTTTTGTTATTTAA 57.288 33.333 0.00 0.00 0.00 1.52
5769 6179 7.728148 AGGTCCAACGGTTTTGTTATTTAAAT 58.272 30.769 5.89 5.89 0.00 1.40
5771 6181 8.489559 GGTCCAACGGTTTTGTTATTTAAATTC 58.510 33.333 5.91 1.50 0.00 2.17
5772 6182 9.032420 GTCCAACGGTTTTGTTATTTAAATTCA 57.968 29.630 5.91 4.08 0.00 2.57
5773 6183 9.765795 TCCAACGGTTTTGTTATTTAAATTCAT 57.234 25.926 5.91 0.00 0.00 2.57
5821 6232 5.763204 TGAAGGTACCAAACAAAGAGATCAC 59.237 40.000 15.94 0.00 0.00 3.06
5825 6277 5.531287 GGTACCAAACAAAGAGATCACAGTT 59.469 40.000 7.15 0.00 0.00 3.16
5827 6279 6.619801 ACCAAACAAAGAGATCACAGTTAC 57.380 37.500 0.00 0.00 0.00 2.50
5833 6285 6.226787 ACAAAGAGATCACAGTTACAAGAGG 58.773 40.000 0.00 0.00 0.00 3.69
5842 6294 6.411376 TCACAGTTACAAGAGGAAAAGTTGA 58.589 36.000 0.00 0.00 0.00 3.18
5849 6301 4.202151 ACAAGAGGAAAAGTTGAATGCCAC 60.202 41.667 0.00 0.00 0.00 5.01
5852 6304 2.554032 AGGAAAAGTTGAATGCCACGAG 59.446 45.455 0.00 0.00 0.00 4.18
5853 6305 2.293399 GGAAAAGTTGAATGCCACGAGT 59.707 45.455 0.00 0.00 0.00 4.18
5889 6343 9.768662 AAAATAGAACAAAGTGATCAAAAGCAT 57.231 25.926 0.00 0.00 0.00 3.79
5928 6383 5.181748 AGTTGTATAGGCTCAGCTCAAAAG 58.818 41.667 0.00 0.00 0.00 2.27
6004 6459 3.846588 AGCCCTTCCAGAAATTCTCAGTA 59.153 43.478 0.00 0.00 0.00 2.74
6151 6606 1.132689 CCCCTCTTATACCCAGCTCCT 60.133 57.143 0.00 0.00 0.00 3.69
6156 6611 0.949582 TTATACCCAGCTCCTCCCCT 59.050 55.000 0.00 0.00 0.00 4.79
6158 6613 1.307976 ATACCCAGCTCCTCCCCTCT 61.308 60.000 0.00 0.00 0.00 3.69
6224 6679 4.980805 GCCAACCGACGCACCTCA 62.981 66.667 0.00 0.00 0.00 3.86
6230 6685 2.645567 CGACGCACCTCACTCACT 59.354 61.111 0.00 0.00 0.00 3.41
6231 6686 1.442857 CGACGCACCTCACTCACTC 60.443 63.158 0.00 0.00 0.00 3.51
6238 6693 1.210413 CCTCACTCACTCACGGACG 59.790 63.158 0.00 0.00 0.00 4.79
6252 6708 4.344865 GACGGGCAAGCCAGGGAA 62.345 66.667 15.44 0.00 37.98 3.97
6330 6799 0.883814 CTGGATCAGGCAGCCGAATC 60.884 60.000 16.85 16.85 0.00 2.52
6331 6800 1.599240 GGATCAGGCAGCCGAATCC 60.599 63.158 24.46 24.46 34.26 3.01
6332 6801 1.146930 GATCAGGCAGCCGAATCCA 59.853 57.895 15.03 0.00 0.00 3.41
6333 6802 0.464373 GATCAGGCAGCCGAATCCAA 60.464 55.000 15.03 0.00 0.00 3.53
6334 6803 0.465097 ATCAGGCAGCCGAATCCAAG 60.465 55.000 5.55 0.00 0.00 3.61
6378 6877 4.474226 AAAAAGAGTGCTACTTGAAGCG 57.526 40.909 0.00 0.00 45.85 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 2.034939 TGCAGCAGGAACAACTTCAATG 59.965 45.455 0.00 0.00 0.00 2.82
141 144 5.870978 GCATAGCCAAAAGACAACATCAAAT 59.129 36.000 0.00 0.00 0.00 2.32
251 258 2.033747 CCACTATACGTGCTCGCAATTG 60.034 50.000 8.29 0.00 42.42 2.32
252 259 2.201732 CCACTATACGTGCTCGCAATT 58.798 47.619 8.29 0.00 42.42 2.32
504 805 1.079438 GGGAGGGAGAGAGTGGTGT 59.921 63.158 0.00 0.00 0.00 4.16
582 894 8.082242 GGGTTTTGCTGGATTCATATACAATAC 58.918 37.037 0.00 0.00 0.00 1.89
588 900 4.169856 AGGGGGTTTTGCTGGATTCATATA 59.830 41.667 0.00 0.00 0.00 0.86
591 903 1.079323 AGGGGGTTTTGCTGGATTCAT 59.921 47.619 0.00 0.00 0.00 2.57
606 918 4.039124 CGGATCAAAAATAATTGGAGGGGG 59.961 45.833 0.00 0.00 0.00 5.40
636 951 2.623416 CGAGGTCAAAGGCCTTCTTTTT 59.377 45.455 20.79 4.88 42.62 1.94
637 952 2.230660 CGAGGTCAAAGGCCTTCTTTT 58.769 47.619 20.79 0.00 42.62 2.27
638 953 1.143073 ACGAGGTCAAAGGCCTTCTTT 59.857 47.619 20.79 0.00 45.85 2.52
639 954 0.765510 ACGAGGTCAAAGGCCTTCTT 59.234 50.000 20.79 2.11 36.29 2.52
640 955 0.765510 AACGAGGTCAAAGGCCTTCT 59.234 50.000 20.79 11.69 36.29 2.85
673 988 0.035915 GGTGAAGGAAGGTCAGCTCC 60.036 60.000 0.00 0.00 39.78 4.70
988 1313 0.865769 ACGCGTGTGAGAAATGGAAC 59.134 50.000 12.93 0.00 0.00 3.62
994 1319 1.057636 GATCGAACGCGTGTGAGAAA 58.942 50.000 14.98 0.00 38.98 2.52
1006 1332 2.227194 GAGAGGAGAGGGAGATCGAAC 58.773 57.143 0.00 0.00 0.00 3.95
1018 1345 2.438614 CGCCACGAGGAGAGGAGA 60.439 66.667 1.86 0.00 36.74 3.71
1180 1512 2.878429 CACCTCCGAGTCGTCCAG 59.122 66.667 12.31 4.20 0.00 3.86
1632 1969 2.534298 AGTCAATTCGTCGAGCAGATG 58.466 47.619 0.00 0.00 37.22 2.90
1672 2009 1.134367 CTATCGCGTCCCTGTCAAGAA 59.866 52.381 5.77 0.00 0.00 2.52
1674 2011 0.456221 ACTATCGCGTCCCTGTCAAG 59.544 55.000 5.77 0.00 0.00 3.02
1742 2079 3.347077 AGTTCCTCAGCTGAATCCTTG 57.653 47.619 18.85 4.57 0.00 3.61
1774 2111 0.674895 GCCGAGAGCAAATGTCTGGT 60.675 55.000 0.00 0.00 42.97 4.00
1827 2164 5.172934 ACCTGCAAATTAAACATCTGCATG 58.827 37.500 0.00 0.54 41.81 4.06
1868 2206 7.801315 TGCATAACGTCATTCTCAAGTTTTTAC 59.199 33.333 0.00 0.00 0.00 2.01
1892 2230 6.645700 TGTTCAACAAAACTGAGAAAATGC 57.354 33.333 0.00 0.00 0.00 3.56
1898 2236 9.868277 AATAAACAATGTTCAACAAAACTGAGA 57.132 25.926 0.00 0.00 0.00 3.27
1993 2331 7.771183 TCCTATCATTGGTTTCTACAAATTGC 58.229 34.615 0.00 0.00 0.00 3.56
2160 2498 4.081365 ACTCATCAAATCATGGCATGCAAA 60.081 37.500 22.56 7.48 0.00 3.68
2219 2557 9.476202 AACATTATCTTTCTTTTTGGTAGCAAC 57.524 29.630 6.90 0.00 0.00 4.17
2220 2558 9.474920 CAACATTATCTTTCTTTTTGGTAGCAA 57.525 29.630 2.54 2.54 0.00 3.91
2226 2564 9.771534 TTAACCCAACATTATCTTTCTTTTTGG 57.228 29.630 0.00 0.00 33.44 3.28
2244 2582 1.144913 ACTGGCTGAAGCTTAACCCAA 59.855 47.619 0.00 0.00 41.70 4.12
2259 2597 1.336125 GGATAAGCATGAGCAACTGGC 59.664 52.381 0.00 0.00 45.49 4.85
2260 2598 2.646930 TGGATAAGCATGAGCAACTGG 58.353 47.619 0.00 0.00 45.49 4.00
2504 2844 8.851145 TCCAAAGTGCACTTGTGTTAATATTTA 58.149 29.630 31.73 5.06 36.12 1.40
2507 2847 6.892658 TCCAAAGTGCACTTGTGTTAATAT 57.107 33.333 31.73 10.75 36.12 1.28
2508 2848 6.892658 ATCCAAAGTGCACTTGTGTTAATA 57.107 33.333 31.73 12.35 36.12 0.98
2509 2849 5.789643 ATCCAAAGTGCACTTGTGTTAAT 57.210 34.783 31.73 18.53 36.12 1.40
2511 2851 5.008217 GTGTATCCAAAGTGCACTTGTGTTA 59.992 40.000 31.73 19.97 36.12 2.41
2512 2852 3.951037 TGTATCCAAAGTGCACTTGTGTT 59.049 39.130 31.73 20.87 36.12 3.32
2513 2853 3.315191 GTGTATCCAAAGTGCACTTGTGT 59.685 43.478 31.73 19.48 36.12 3.72
2514 2854 3.314913 TGTGTATCCAAAGTGCACTTGTG 59.685 43.478 31.73 26.72 36.12 3.33
2525 2865 4.331968 GAGGAATGTGGTGTGTATCCAAA 58.668 43.478 0.00 0.00 36.68 3.28
2533 2873 1.909302 ACTAGGGAGGAATGTGGTGTG 59.091 52.381 0.00 0.00 0.00 3.82
2537 2877 1.879575 TCCACTAGGGAGGAATGTGG 58.120 55.000 0.00 0.00 46.71 4.17
2612 2954 5.505173 AACCATGTGAAAGACAAAGAGTG 57.495 39.130 0.00 0.00 38.36 3.51
2756 3098 8.887717 CAGGGCAGCTATCTATTTATATCAAAC 58.112 37.037 0.00 0.00 0.00 2.93
2782 3124 2.571212 TGACAACAATGGACAGGACAC 58.429 47.619 0.00 0.00 0.00 3.67
2785 3127 5.434182 TGATATGACAACAATGGACAGGA 57.566 39.130 0.00 0.00 0.00 3.86
2786 3128 5.506815 GCATGATATGACAACAATGGACAGG 60.507 44.000 0.00 0.00 0.00 4.00
2823 3165 3.141398 CTGCAGTGCCAGAAAGAAACTA 58.859 45.455 13.72 0.00 34.77 2.24
2831 3174 3.354948 ACATTATCTGCAGTGCCAGAA 57.645 42.857 14.67 3.03 44.34 3.02
2954 3297 4.984295 TGGAAACATCACTCCAGAATGAA 58.016 39.130 0.00 0.00 36.79 2.57
3086 3429 5.172687 TGTATCAAATGCTGTAACCTGGA 57.827 39.130 0.00 0.00 0.00 3.86
3108 3451 8.107095 TCCAACAGATATTTAGTACCTTTGCTT 58.893 33.333 0.00 0.00 0.00 3.91
3335 3678 5.008613 TCCTGACACATTAACTTGCAAGAAC 59.991 40.000 32.50 11.94 0.00 3.01
3336 3679 5.129634 TCCTGACACATTAACTTGCAAGAA 58.870 37.500 32.50 17.58 0.00 2.52
3384 3728 9.764870 CTCACATCTTAACATGAGTTGTATTTG 57.235 33.333 0.00 0.00 37.68 2.32
3428 3772 4.708726 AAAAAGTATGCATGTCAGGAGC 57.291 40.909 10.16 0.00 0.00 4.70
3659 4017 9.429359 GAATCATGAGTATGGGAGTATACAAAG 57.571 37.037 5.50 0.00 36.27 2.77
3672 4030 9.558648 TTTGAAAAATGACGAATCATGAGTATG 57.441 29.630 0.09 0.00 45.26 2.39
4101 4466 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
4102 4467 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4103 4468 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4104 4469 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4105 4470 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4106 4471 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
4107 4472 3.256383 TGAGACAAGTAATTCCGAACGGA 59.744 43.478 12.04 12.04 43.52 4.69
4108 4473 3.581755 TGAGACAAGTAATTCCGAACGG 58.418 45.455 6.94 6.94 0.00 4.44
4109 4474 4.482386 TCTGAGACAAGTAATTCCGAACG 58.518 43.478 0.00 0.00 0.00 3.95
4110 4475 6.591261 GTTTCTGAGACAAGTAATTCCGAAC 58.409 40.000 0.00 0.00 0.00 3.95
4111 4476 5.404366 CGTTTCTGAGACAAGTAATTCCGAA 59.596 40.000 0.00 0.00 0.00 4.30
4112 4477 4.921515 CGTTTCTGAGACAAGTAATTCCGA 59.078 41.667 0.00 0.00 0.00 4.55
4113 4478 4.091509 CCGTTTCTGAGACAAGTAATTCCG 59.908 45.833 0.00 0.00 0.00 4.30
4114 4479 5.235516 TCCGTTTCTGAGACAAGTAATTCC 58.764 41.667 0.00 0.00 0.00 3.01
4115 4480 6.369065 ACATCCGTTTCTGAGACAAGTAATTC 59.631 38.462 0.00 0.00 0.00 2.17
4116 4481 6.231211 ACATCCGTTTCTGAGACAAGTAATT 58.769 36.000 0.00 0.00 0.00 1.40
4117 4482 5.794894 ACATCCGTTTCTGAGACAAGTAAT 58.205 37.500 0.00 0.00 0.00 1.89
4118 4483 5.209818 ACATCCGTTTCTGAGACAAGTAA 57.790 39.130 0.00 0.00 0.00 2.24
4119 4484 4.866508 ACATCCGTTTCTGAGACAAGTA 57.133 40.909 0.00 0.00 0.00 2.24
4120 4485 3.753294 ACATCCGTTTCTGAGACAAGT 57.247 42.857 0.00 0.00 0.00 3.16
4121 4486 5.655488 AGATACATCCGTTTCTGAGACAAG 58.345 41.667 0.00 0.00 32.86 3.16
4122 4487 5.661056 AGATACATCCGTTTCTGAGACAA 57.339 39.130 0.00 0.00 32.86 3.18
4123 4488 6.120220 TCTAGATACATCCGTTTCTGAGACA 58.880 40.000 0.00 0.00 34.72 3.41
4124 4489 6.621316 TCTAGATACATCCGTTTCTGAGAC 57.379 41.667 0.00 0.00 34.72 3.36
4125 4490 6.829298 AGTTCTAGATACATCCGTTTCTGAGA 59.171 38.462 0.00 0.00 34.72 3.27
4126 4491 7.033530 AGTTCTAGATACATCCGTTTCTGAG 57.966 40.000 0.00 0.00 34.72 3.35
4127 4492 8.515695 TTAGTTCTAGATACATCCGTTTCTGA 57.484 34.615 0.00 0.00 34.72 3.27
4128 4493 9.582431 TTTTAGTTCTAGATACATCCGTTTCTG 57.418 33.333 0.00 0.00 34.72 3.02
4132 4497 9.674824 CGTATTTTAGTTCTAGATACATCCGTT 57.325 33.333 0.00 0.00 0.00 4.44
4133 4498 8.844244 ACGTATTTTAGTTCTAGATACATCCGT 58.156 33.333 0.00 0.00 0.00 4.69
4134 4499 9.327529 GACGTATTTTAGTTCTAGATACATCCG 57.672 37.037 0.00 0.00 0.00 4.18
4152 4517 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
4153 4518 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
4154 4519 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
4155 4520 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
4156 4521 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
4157 4522 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
4158 4523 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
4159 4524 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
4160 4525 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
4161 4526 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
4162 4527 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
4163 4528 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
4164 4529 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
4165 4530 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
4166 4531 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
4167 4532 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
4168 4533 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
4169 4534 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
4170 4535 3.001330 GGAATTACTCGTCGCAGAAATGG 59.999 47.826 0.00 0.00 39.69 3.16
4171 4536 3.301835 CGGAATTACTCGTCGCAGAAATG 60.302 47.826 0.00 0.00 39.69 2.32
4172 4537 2.858344 CGGAATTACTCGTCGCAGAAAT 59.142 45.455 0.00 0.00 39.69 2.17
4173 4538 2.095110 TCGGAATTACTCGTCGCAGAAA 60.095 45.455 0.00 0.00 39.69 2.52
4174 4539 1.469703 TCGGAATTACTCGTCGCAGAA 59.530 47.619 0.00 0.00 39.69 3.02
4175 4540 1.089112 TCGGAATTACTCGTCGCAGA 58.911 50.000 0.00 0.00 0.00 4.26
4176 4541 1.582502 GTTCGGAATTACTCGTCGCAG 59.417 52.381 0.00 0.00 0.00 5.18
4177 4542 1.621107 GTTCGGAATTACTCGTCGCA 58.379 50.000 0.00 0.00 0.00 5.10
4178 4543 0.564767 CGTTCGGAATTACTCGTCGC 59.435 55.000 0.00 0.00 0.00 5.19
4179 4544 1.186030 CCGTTCGGAATTACTCGTCG 58.814 55.000 5.19 0.00 0.00 5.12
4180 4545 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
4181 4546 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
4182 4547 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
4183 4548 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
4184 4549 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4185 4550 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4186 4551 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4187 4552 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
4188 4553 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
4189 4554 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
4190 4555 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
4191 4556 1.878734 GATAGTACTCCCTCCGTTCGG 59.121 57.143 0.00 4.74 0.00 4.30
4192 4557 2.848691 AGATAGTACTCCCTCCGTTCG 58.151 52.381 0.00 0.00 0.00 3.95
4193 4558 5.239087 CACTTAGATAGTACTCCCTCCGTTC 59.761 48.000 0.00 0.00 34.56 3.95
4194 4559 5.131784 CACTTAGATAGTACTCCCTCCGTT 58.868 45.833 0.00 0.00 34.56 4.44
4195 4560 4.716794 CACTTAGATAGTACTCCCTCCGT 58.283 47.826 0.00 0.00 34.56 4.69
4196 4561 3.502979 GCACTTAGATAGTACTCCCTCCG 59.497 52.174 0.00 0.00 34.56 4.63
4197 4562 3.827876 GGCACTTAGATAGTACTCCCTCC 59.172 52.174 0.00 0.00 34.56 4.30
4198 4563 4.732065 AGGCACTTAGATAGTACTCCCTC 58.268 47.826 0.00 0.00 34.56 4.30
4199 4564 4.817874 AGGCACTTAGATAGTACTCCCT 57.182 45.455 0.00 0.00 34.56 4.20
4254 4619 6.756542 TCCAACAGATAACGTGAATGTATCAG 59.243 38.462 6.90 2.14 39.19 2.90
4255 4620 6.635755 TCCAACAGATAACGTGAATGTATCA 58.364 36.000 6.90 0.00 35.05 2.15
4291 4656 8.671028 ACGGACATAATTCCAACAATAGTTAAC 58.329 33.333 0.00 0.00 35.85 2.01
4316 4681 6.644248 AAACACTTAGGGTGGTAATTCAAC 57.356 37.500 0.00 0.00 46.43 3.18
4575 4941 3.763097 TGCAGTGAACAACAAACTCTG 57.237 42.857 0.00 0.00 0.00 3.35
4662 5029 7.225538 CACCAGAACCTCATCTTCAACATATAC 59.774 40.741 0.00 0.00 0.00 1.47
4742 5112 8.627403 CCATTCATTTATGACACTCATTAAGCT 58.373 33.333 0.00 0.00 38.26 3.74
4743 5113 7.864379 CCCATTCATTTATGACACTCATTAAGC 59.136 37.037 0.00 0.00 38.26 3.09
4744 5114 8.906867 ACCCATTCATTTATGACACTCATTAAG 58.093 33.333 0.00 0.00 38.26 1.85
4746 5116 8.052141 TCACCCATTCATTTATGACACTCATTA 58.948 33.333 0.00 0.00 38.26 1.90
4748 5118 6.425735 TCACCCATTCATTTATGACACTCAT 58.574 36.000 0.00 0.00 40.72 2.90
4749 5119 5.814481 TCACCCATTCATTTATGACACTCA 58.186 37.500 0.00 0.00 36.36 3.41
4750 5120 6.949352 ATCACCCATTCATTTATGACACTC 57.051 37.500 0.00 0.00 36.36 3.51
4751 5121 8.055181 AGTTATCACCCATTCATTTATGACACT 58.945 33.333 0.00 0.00 36.36 3.55
4752 5122 8.225603 AGTTATCACCCATTCATTTATGACAC 57.774 34.615 0.00 0.00 36.36 3.67
4755 5125 8.944138 TCCTAGTTATCACCCATTCATTTATGA 58.056 33.333 0.00 0.00 34.44 2.15
4891 5261 5.303845 GGGTCATTACGGGTTTAGTAGATCT 59.696 44.000 0.00 0.00 0.00 2.75
4898 5268 4.145365 TGATGGGTCATTACGGGTTTAG 57.855 45.455 0.00 0.00 0.00 1.85
4905 5275 6.990349 AGTTATACCTTTGATGGGTCATTACG 59.010 38.462 0.00 0.00 38.19 3.18
5070 5440 9.553064 AAAGGAGAGCAACAATATATCACTAAG 57.447 33.333 0.00 0.00 0.00 2.18
5153 5523 3.648507 AATCTGCAGCTTCTCCTTGAT 57.351 42.857 9.47 0.00 0.00 2.57
5165 5535 1.428448 TCAACGTCCGAAATCTGCAG 58.572 50.000 7.63 7.63 0.00 4.41
5166 5536 1.872388 TTCAACGTCCGAAATCTGCA 58.128 45.000 0.00 0.00 0.00 4.41
5167 5537 2.961522 TTTCAACGTCCGAAATCTGC 57.038 45.000 8.57 0.00 0.00 4.26
5171 5541 4.069304 TCCTTGATTTCAACGTCCGAAAT 58.931 39.130 20.03 20.03 43.90 2.17
5172 5542 3.468770 TCCTTGATTTCAACGTCCGAAA 58.531 40.909 13.56 13.56 36.83 3.46
5173 5543 3.064207 CTCCTTGATTTCAACGTCCGAA 58.936 45.455 0.00 0.00 0.00 4.30
5174 5544 2.297880 TCTCCTTGATTTCAACGTCCGA 59.702 45.455 0.00 0.00 0.00 4.55
5175 5545 2.683968 TCTCCTTGATTTCAACGTCCG 58.316 47.619 0.00 0.00 0.00 4.79
5176 5546 3.120165 GCTTCTCCTTGATTTCAACGTCC 60.120 47.826 0.00 0.00 0.00 4.79
5177 5547 3.748568 AGCTTCTCCTTGATTTCAACGTC 59.251 43.478 0.00 0.00 0.00 4.34
5178 5548 3.499918 CAGCTTCTCCTTGATTTCAACGT 59.500 43.478 0.00 0.00 0.00 3.99
5179 5549 3.669023 GCAGCTTCTCCTTGATTTCAACG 60.669 47.826 0.00 0.00 0.00 4.10
5180 5550 3.254166 TGCAGCTTCTCCTTGATTTCAAC 59.746 43.478 0.00 0.00 0.00 3.18
5181 5551 3.489355 TGCAGCTTCTCCTTGATTTCAA 58.511 40.909 0.00 0.00 0.00 2.69
5182 5552 3.079578 CTGCAGCTTCTCCTTGATTTCA 58.920 45.455 0.00 0.00 0.00 2.69
5183 5553 3.341823 TCTGCAGCTTCTCCTTGATTTC 58.658 45.455 9.47 0.00 0.00 2.17
5184 5554 3.430042 TCTGCAGCTTCTCCTTGATTT 57.570 42.857 9.47 0.00 0.00 2.17
5185 5555 3.648507 ATCTGCAGCTTCTCCTTGATT 57.351 42.857 9.47 0.00 0.00 2.57
5186 5556 3.648507 AATCTGCAGCTTCTCCTTGAT 57.351 42.857 9.47 0.00 0.00 2.57
5187 5557 3.341823 GAAATCTGCAGCTTCTCCTTGA 58.658 45.455 9.47 0.00 0.00 3.02
5188 5558 2.095532 CGAAATCTGCAGCTTCTCCTTG 59.904 50.000 19.81 6.41 0.00 3.61
5189 5559 2.354259 CGAAATCTGCAGCTTCTCCTT 58.646 47.619 19.81 0.07 0.00 3.36
5190 5560 1.406614 CCGAAATCTGCAGCTTCTCCT 60.407 52.381 19.81 0.40 0.00 3.69
5191 5561 1.012841 CCGAAATCTGCAGCTTCTCC 58.987 55.000 19.81 6.90 0.00 3.71
5192 5562 1.663135 GTCCGAAATCTGCAGCTTCTC 59.337 52.381 19.81 11.94 0.00 2.87
5193 5563 1.731720 GTCCGAAATCTGCAGCTTCT 58.268 50.000 19.81 5.96 0.00 2.85
5194 5564 0.371645 CGTCCGAAATCTGCAGCTTC 59.628 55.000 9.47 12.99 0.00 3.86
5195 5565 0.320771 ACGTCCGAAATCTGCAGCTT 60.321 50.000 9.47 1.96 0.00 3.74
5196 5566 0.320771 AACGTCCGAAATCTGCAGCT 60.321 50.000 9.47 0.00 0.00 4.24
5197 5567 0.179215 CAACGTCCGAAATCTGCAGC 60.179 55.000 9.47 0.00 0.00 5.25
5245 5615 1.352156 CGGCAGCTACTGTTTCGACC 61.352 60.000 0.00 0.00 33.43 4.79
5301 5671 2.575461 GCCCAGCATGCTTGAACC 59.425 61.111 19.98 2.96 31.97 3.62
5332 5702 0.721154 CAACGCACATACGCTGTCAT 59.279 50.000 0.00 0.00 35.29 3.06
5333 5703 1.896339 GCAACGCACATACGCTGTCA 61.896 55.000 0.00 0.00 35.29 3.58
5334 5704 1.225745 GCAACGCACATACGCTGTC 60.226 57.895 0.00 0.00 35.29 3.51
5335 5705 1.667830 AGCAACGCACATACGCTGT 60.668 52.632 0.00 0.00 39.20 4.40
5336 5706 1.225827 CAGCAACGCACATACGCTG 60.226 57.895 0.00 0.00 43.55 5.18
5337 5707 1.667830 ACAGCAACGCACATACGCT 60.668 52.632 0.00 0.00 36.19 5.07
5338 5708 1.509787 CACAGCAACGCACATACGC 60.510 57.895 0.00 0.00 36.19 4.42
5339 5709 1.132436 CCACAGCAACGCACATACG 59.868 57.895 0.00 0.00 39.50 3.06
5340 5710 1.154225 GCCACAGCAACGCACATAC 60.154 57.895 0.00 0.00 39.53 2.39
5341 5711 3.262936 GCCACAGCAACGCACATA 58.737 55.556 0.00 0.00 39.53 2.29
5356 5726 2.038690 CATGCTCCATGGTCATGCC 58.961 57.895 25.37 7.57 38.11 4.40
5380 5750 5.599242 ACCCCTACTCTATTTGCTTCTCTAC 59.401 44.000 0.00 0.00 0.00 2.59
5389 5759 4.514401 GTGACCAACCCCTACTCTATTTG 58.486 47.826 0.00 0.00 0.00 2.32
5417 5787 9.990360 TGTTTGATTTTAGATGTCTACTGTGTA 57.010 29.630 0.00 0.00 0.00 2.90
5463 5833 2.206750 GCCAACTGACGTGTTAGAACA 58.793 47.619 0.00 0.00 36.38 3.18
5464 5834 2.206750 TGCCAACTGACGTGTTAGAAC 58.793 47.619 0.00 0.00 0.00 3.01
5465 5835 2.605837 TGCCAACTGACGTGTTAGAA 57.394 45.000 0.00 0.00 0.00 2.10
5466 5836 2.605837 TTGCCAACTGACGTGTTAGA 57.394 45.000 0.00 0.00 0.00 2.10
5467 5837 2.548057 ACATTGCCAACTGACGTGTTAG 59.452 45.455 0.00 0.00 0.00 2.34
5468 5838 2.566913 ACATTGCCAACTGACGTGTTA 58.433 42.857 0.00 0.00 0.00 2.41
5469 5839 1.388547 ACATTGCCAACTGACGTGTT 58.611 45.000 0.00 0.00 0.00 3.32
5470 5840 2.248280 TACATTGCCAACTGACGTGT 57.752 45.000 0.00 0.00 0.00 4.49
5471 5841 2.159531 CCATACATTGCCAACTGACGTG 60.160 50.000 0.00 0.00 0.00 4.49
5472 5842 2.083774 CCATACATTGCCAACTGACGT 58.916 47.619 0.00 0.00 0.00 4.34
5473 5843 2.083774 ACCATACATTGCCAACTGACG 58.916 47.619 0.00 0.00 0.00 4.35
5474 5844 2.819608 ACACCATACATTGCCAACTGAC 59.180 45.455 0.00 0.00 0.00 3.51
5475 5845 3.153369 ACACCATACATTGCCAACTGA 57.847 42.857 0.00 0.00 0.00 3.41
5476 5846 3.128589 GGTACACCATACATTGCCAACTG 59.871 47.826 0.00 0.00 35.64 3.16
5477 5847 3.245087 TGGTACACCATACATTGCCAACT 60.245 43.478 0.00 0.00 42.01 3.16
5478 5848 3.085533 TGGTACACCATACATTGCCAAC 58.914 45.455 0.00 0.00 42.01 3.77
5479 5849 3.441500 TGGTACACCATACATTGCCAA 57.558 42.857 0.00 0.00 42.01 4.52
5493 5863 5.420725 AGCTAATTCAGACATGTGGTACA 57.579 39.130 1.15 0.00 0.00 2.90
5494 5864 5.643777 ACAAGCTAATTCAGACATGTGGTAC 59.356 40.000 1.15 0.00 0.00 3.34
5495 5865 5.804639 ACAAGCTAATTCAGACATGTGGTA 58.195 37.500 1.15 0.00 0.00 3.25
5496 5866 4.655963 ACAAGCTAATTCAGACATGTGGT 58.344 39.130 1.15 0.00 0.00 4.16
5497 5867 5.181811 TGAACAAGCTAATTCAGACATGTGG 59.818 40.000 1.15 0.00 31.29 4.17
5498 5868 6.245115 TGAACAAGCTAATTCAGACATGTG 57.755 37.500 1.15 0.00 31.29 3.21
5499 5869 6.432162 ACATGAACAAGCTAATTCAGACATGT 59.568 34.615 15.52 0.00 38.19 3.21
5500 5870 6.849502 ACATGAACAAGCTAATTCAGACATG 58.150 36.000 15.52 11.80 38.19 3.21
5501 5871 8.743085 ATACATGAACAAGCTAATTCAGACAT 57.257 30.769 15.52 7.47 38.19 3.06
5502 5872 8.565896 AATACATGAACAAGCTAATTCAGACA 57.434 30.769 15.52 5.92 38.19 3.41
5585 5994 6.882610 TTTAGAAAATCTGCTTGAGCTTCA 57.117 33.333 4.44 0.00 42.66 3.02
5672 6081 8.588290 AAATAGTACTCCCAACATAAATTGCA 57.412 30.769 0.00 0.00 0.00 4.08
5713 6122 5.192327 AGTTTTGAAGCCAAACTCTCATG 57.808 39.130 0.00 0.00 41.54 3.07
5714 6123 4.279420 GGAGTTTTGAAGCCAAACTCTCAT 59.721 41.667 19.70 0.00 41.54 2.90
5717 6127 3.903467 AGGAGTTTTGAAGCCAAACTCT 58.097 40.909 19.70 8.34 41.54 3.24
5738 6148 6.712179 AACAAAACCGTTGGACCTTTATAA 57.288 33.333 0.00 0.00 0.00 0.98
5795 6205 7.004086 TGATCTCTTTGTTTGGTACCTTCAAT 58.996 34.615 14.36 1.07 0.00 2.57
5821 6232 6.638468 GCATTCAACTTTTCCTCTTGTAACTG 59.362 38.462 0.00 0.00 0.00 3.16
5825 6277 5.009610 GTGGCATTCAACTTTTCCTCTTGTA 59.990 40.000 0.00 0.00 0.00 2.41
5827 6279 4.301628 GTGGCATTCAACTTTTCCTCTTG 58.698 43.478 0.00 0.00 0.00 3.02
5833 6285 3.626028 ACTCGTGGCATTCAACTTTTC 57.374 42.857 0.00 0.00 0.00 2.29
5842 6294 3.950397 TCCTTCATTTACTCGTGGCATT 58.050 40.909 0.00 0.00 0.00 3.56
5877 6331 4.811969 AAATCTGGCATGCTTTTGATCA 57.188 36.364 18.92 3.92 0.00 2.92
5878 6332 5.172934 TCAAAATCTGGCATGCTTTTGATC 58.827 37.500 28.05 10.24 40.66 2.92
5879 6333 5.155278 TCAAAATCTGGCATGCTTTTGAT 57.845 34.783 28.05 18.93 40.66 2.57
5889 6343 8.902806 CCTATACAACTAATTCAAAATCTGGCA 58.097 33.333 0.00 0.00 0.00 4.92
5979 6434 2.240921 GAGAATTTCTGGAAGGGCTCCT 59.759 50.000 3.03 0.00 45.64 3.69
6146 6601 2.766229 GGGTGAGAGGGGAGGAGC 60.766 72.222 0.00 0.00 0.00 4.70
6224 6679 3.681835 GCCCGTCCGTGAGTGAGT 61.682 66.667 0.00 0.00 0.00 3.41
6238 6693 4.344865 TCGTTCCCTGGCTTGCCC 62.345 66.667 9.35 0.00 0.00 5.36
6266 6722 3.327404 GGGGCCCAAGGTTCGAGA 61.327 66.667 26.86 0.00 0.00 4.04
6270 6726 1.753078 GAATCGGGGCCCAAGGTTC 60.753 63.158 26.86 23.83 0.00 3.62
6271 6727 2.359011 GAATCGGGGCCCAAGGTT 59.641 61.111 26.86 19.76 0.00 3.50
6272 6728 3.739613 GGAATCGGGGCCCAAGGT 61.740 66.667 26.86 10.83 0.00 3.50
6307 6776 1.451028 GGCTGCCTGATCCAGTGAC 60.451 63.158 12.43 0.00 32.93 3.67
6359 6858 1.801178 GCGCTTCAAGTAGCACTCTTT 59.199 47.619 0.00 0.00 41.28 2.52
6362 6861 0.718343 CTGCGCTTCAAGTAGCACTC 59.282 55.000 9.73 0.00 41.28 3.51
6364 6863 1.133458 GCTGCGCTTCAAGTAGCAC 59.867 57.895 9.73 1.39 44.79 4.40
6420 6919 2.162754 GTGTTACGATGACGGGGCG 61.163 63.158 0.00 0.00 44.46 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.