AutoCloner

Multiple sequence alignment - TraesCS7B01G022500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G022500	chr7B	100.000	2785	0	0	1	2785	21672693	21669909	0.000000e+00	5144.0
1	TraesCS7B01G022500	chr7B	94.678	902	46	2	1626	2526	21721208	21720308	0.000000e+00	1399.0
2	TraesCS7B01G022500	chr7B	99.862	723	1	0	897	1619	21821959	21821237	0.000000e+00	1330.0
3	TraesCS7B01G022500	chr7B	87.710	773	80	11	854	1619	21722109	21721345	0.000000e+00	887.0
4	TraesCS7B01G022500	chr7B	84.783	644	83	12	979	1619	21936314	21935683	1.410000e-177	632.0
5	TraesCS7B01G022500	chr7B	82.540	693	102	11	1643	2323	21935517	21934832	2.390000e-165	592.0
6	TraesCS7B01G022500	chr7B	83.094	556	87	4	1655	2208	21821059	21820509	1.490000e-137	499.0
7	TraesCS7B01G022500	chr7B	97.276	257	6	1	2529	2785	21720064	21719809	4.260000e-118	435.0
8	TraesCS7B01G022500	chr7B	80.663	543	63	22	2248	2779	21820503	21819992	1.570000e-102	383.0
9	TraesCS7B01G022500	chr7B	94.231	52	3	0	783	834	21722153	21722102	2.300000e-11	80.5
10	TraesCS7B01G022500	chr7A	93.734	1165	67	4	1623	2785	79645416	79644256	0.000000e+00	1742.0
11	TraesCS7B01G022500	chr7A	88.832	779	74	7	854	1619	79654058	79653280	0.000000e+00	944.0
12	TraesCS7B01G022500	chr7A	88.564	752	81	4	870	1619	79650152	79649404	0.000000e+00	907.0
13	TraesCS7B01G022500	chr7A	87.549	763	74	13	870	1619	79646274	79645520	0.000000e+00	863.0
14	TraesCS7B01G022500	chr7A	82.454	929	131	19	1694	2613	79810553	79809648	0.000000e+00	784.0
15	TraesCS7B01G022500	chr7A	80.306	980	140	26	1655	2613	79815948	79815001	0.000000e+00	691.0
16	TraesCS7B01G022500	chr7A	100.000	29	0	0	854	882	79646317	79646289	1.000000e-03	54.7
17	TraesCS7B01G022500	chr7A	100.000	29	0	0	854	882	79650195	79650167	1.000000e-03	54.7
18	TraesCS7B01G022500	chr2D	94.125	783	43	3	1	780	420594050	420594832	0.000000e+00	1188.0
19	TraesCS7B01G022500	chr7D	95.574	723	32	0	897	1619	75358427	75357705	0.000000e+00	1158.0
20	TraesCS7B01G022500	chr7D	90.439	774	66	5	854	1619	75807089	75806316	0.000000e+00	1013.0
21	TraesCS7B01G022500	chr7D	93.174	586	36	3	198	779	634701497	634700912	0.000000e+00	857.0
22	TraesCS7B01G022500	chr7D	85.800	669	82	10	953	1619	75890027	75889370	0.000000e+00	697.0
23	TraesCS7B01G022500	chr7D	80.207	965	153	22	1655	2613	75889192	75888260	0.000000e+00	689.0
24	TraesCS7B01G022500	chr7D	79.573	984	154	34	1643	2611	75806141	75805190	0.000000e+00	660.0
25	TraesCS7B01G022500	chr7D	78.586	962	178	21	1655	2611	75357527	75356589	6.590000e-171	610.0
26	TraesCS7B01G022500	chr7D	96.111	180	6	1	1	179	634702580	634702401	2.710000e-75	292.0
27	TraesCS7B01G022500	chr7D	94.545	165	9	0	2616	2780	14728741	14728905	3.560000e-64	255.0
28	TraesCS7B01G022500	chr4B	88.689	778	81	4	4	779	582363816	582363044	0.000000e+00	942.0
29	TraesCS7B01G022500	chr6B	87.084	782	81	7	1	779	413587250	413586486	0.000000e+00	867.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G022500	chr7B	21669909	21672693	2784	True	5144.000000	5144	100.000000	1	2785	1	chr7B.!!$R1	2784
1	TraesCS7B01G022500	chr7B	21819992	21821959	1967	True	737.333333	1330	87.873000	897	2779	3	chr7B.!!$R3	1882
2	TraesCS7B01G022500	chr7B	21719809	21722153	2344	True	700.375000	1399	93.473750	783	2785	4	chr7B.!!$R2	2002
3	TraesCS7B01G022500	chr7B	21934832	21936314	1482	True	612.000000	632	83.661500	979	2323	2	chr7B.!!$R4	1344
4	TraesCS7B01G022500	chr7A	79809648	79810553	905	True	784.000000	784	82.454000	1694	2613	1	chr7A.!!$R1	919
5	TraesCS7B01G022500	chr7A	79644256	79654058	9802	True	760.900000	1742	93.113167	854	2785	6	chr7A.!!$R3	1931
6	TraesCS7B01G022500	chr7A	79815001	79815948	947	True	691.000000	691	80.306000	1655	2613	1	chr7A.!!$R2	958
7	TraesCS7B01G022500	chr2D	420594050	420594832	782	False	1188.000000	1188	94.125000	1	780	1	chr2D.!!$F1	779
8	TraesCS7B01G022500	chr7D	75356589	75358427	1838	True	884.000000	1158	87.080000	897	2611	2	chr7D.!!$R1	1714
9	TraesCS7B01G022500	chr7D	75805190	75807089	1899	True	836.500000	1013	85.006000	854	2611	2	chr7D.!!$R2	1757
10	TraesCS7B01G022500	chr7D	75888260	75890027	1767	True	693.000000	697	83.003500	953	2613	2	chr7D.!!$R3	1660
11	TraesCS7B01G022500	chr7D	634700912	634702580	1668	True	574.500000	857	94.642500	1	779	2	chr7D.!!$R4	778
12	TraesCS7B01G022500	chr4B	582363044	582363816	772	True	942.000000	942	88.689000	4	779	1	chr4B.!!$R1	775
13	TraesCS7B01G022500	chr6B	413586486	413587250	764	True	867.000000	867	87.084000	1	779	1	chr6B.!!$R1	778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
881	1772	0.95104	GTCTTCCAGTTCCACGCCAG	60.951	60.0	0.0	0.0	0.0	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2437	11341	0.110056	GACATCACAAACAGCAGCCG	60.11	55.0	0.0	0.0	0.0	5.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
117	119	2.605257	TGGACTCCCCGAACCATATAG	58.395	52.381	0.00	0.00	37.93	1.31
119	121	3.181410	TGGACTCCCCGAACCATATAGAT	60.181	47.826	0.00	0.00	37.93	1.98
206	1093	8.409358	TCGTAGCATGGTATCATATATAGCAT	57.591	34.615	8.06	4.34	41.66	3.79
207	1094	8.860088	TCGTAGCATGGTATCATATATAGCATT	58.140	33.333	8.06	0.00	39.74	3.56
268	1155	6.152831	ACTTGTTAATGGGCACTTCTATTTCC	59.847	38.462	0.00	0.00	0.00	3.13
297	1184	7.792364	TTGAGAAAGGAGATGGAGTAAGTTA	57.208	36.000	0.00	0.00	0.00	2.24
337	1224	3.491792	CGATCTCCAAGAACTTAGCTCCC	60.492	52.174	0.00	0.00	0.00	4.30
447	1335	3.915437	ATTTTTGGCTTACGTGGTGAG	57.085	42.857	0.00	0.00	0.00	3.51
452	1340	1.274167	TGGCTTACGTGGTGAGGTTAG	59.726	52.381	0.00	0.00	0.00	2.34
480	1368	6.144402	GTGCAACAATTCAAAGATTCAACGAT	59.856	34.615	0.00	0.00	36.32	3.73
481	1369	6.144241	TGCAACAATTCAAAGATTCAACGATG	59.856	34.615	0.00	0.00	0.00	3.84
575	1463	7.965107	ACACAAATTTTCAAGCGCAATTTAAAA	59.035	25.926	11.47	7.05	30.60	1.52
581	1469	6.893958	TTCAAGCGCAATTTAAAAGAAACA	57.106	29.167	11.47	0.00	0.00	2.83
582	1470	6.509317	TCAAGCGCAATTTAAAAGAAACAG	57.491	33.333	11.47	0.00	0.00	3.16
583	1471	6.269315	TCAAGCGCAATTTAAAAGAAACAGA	58.731	32.000	11.47	0.00	0.00	3.41
584	1472	6.754209	TCAAGCGCAATTTAAAAGAAACAGAA	59.246	30.769	11.47	0.00	0.00	3.02
586	1474	5.175673	AGCGCAATTTAAAAGAAACAGAAGC	59.824	36.000	11.47	0.00	0.00	3.86
587	1475	5.051106	GCGCAATTTAAAAGAAACAGAAGCA	60.051	36.000	0.30	0.00	0.00	3.91
589	1477	7.566709	CGCAATTTAAAAGAAACAGAAGCAAT	58.433	30.769	0.00	0.00	0.00	3.56
590	1478	8.698854	CGCAATTTAAAAGAAACAGAAGCAATA	58.301	29.630	0.00	0.00	0.00	1.90
749	1640	5.388111	GTTACTGTTTTAAAGATGGACGGC	58.612	41.667	0.00	0.00	0.00	5.68
750	1641	2.482721	ACTGTTTTAAAGATGGACGGCG	59.517	45.455	4.80	4.80	0.00	6.46
780	1671	2.541999	GCGCGCCTATATGATCTAGTCC	60.542	54.545	23.24	0.00	0.00	3.85
781	1672	2.946329	CGCGCCTATATGATCTAGTCCT	59.054	50.000	0.00	0.00	0.00	3.85
792	1683	3.203263	TGATCTAGTCCTCTGTACAGCCT	59.797	47.826	18.45	12.47	0.00	4.58
796	1687	3.007473	AGTCCTCTGTACAGCCTAGAC	57.993	52.381	18.45	18.61	0.00	2.59
798	1689	2.685897	GTCCTCTGTACAGCCTAGACAG	59.314	54.545	18.45	8.14	41.62	3.51
826	1717	2.502947	AGCACAGCATACTCCTCATTCA	59.497	45.455	0.00	0.00	0.00	2.57
827	1718	2.611292	GCACAGCATACTCCTCATTCAC	59.389	50.000	0.00	0.00	0.00	3.18
828	1719	3.681034	GCACAGCATACTCCTCATTCACT	60.681	47.826	0.00	0.00	0.00	3.41
829	1720	4.511527	CACAGCATACTCCTCATTCACTT	58.488	43.478	0.00	0.00	0.00	3.16
830	1721	4.569966	CACAGCATACTCCTCATTCACTTC	59.430	45.833	0.00	0.00	0.00	3.01
831	1722	4.125703	CAGCATACTCCTCATTCACTTCC	58.874	47.826	0.00	0.00	0.00	3.46
832	1723	3.135530	AGCATACTCCTCATTCACTTCCC	59.864	47.826	0.00	0.00	0.00	3.97
833	1724	3.745797	GCATACTCCTCATTCACTTCCCC	60.746	52.174	0.00	0.00	0.00	4.81
834	1725	2.350863	ACTCCTCATTCACTTCCCCT	57.649	50.000	0.00	0.00	0.00	4.79
835	1726	3.491766	ACTCCTCATTCACTTCCCCTA	57.508	47.619	0.00	0.00	0.00	3.53
836	1727	3.803340	ACTCCTCATTCACTTCCCCTAA	58.197	45.455	0.00	0.00	0.00	2.69
837	1728	4.175962	ACTCCTCATTCACTTCCCCTAAA	58.824	43.478	0.00	0.00	0.00	1.85
838	1729	4.601857	ACTCCTCATTCACTTCCCCTAAAA	59.398	41.667	0.00	0.00	0.00	1.52
839	1730	5.074515	ACTCCTCATTCACTTCCCCTAAAAA	59.925	40.000	0.00	0.00	0.00	1.94
881	1772	0.951040	GTCTTCCAGTTCCACGCCAG	60.951	60.000	0.00	0.00	0.00	4.85
1619	2613	2.649034	GTCTCCTCGCACGTCCAA	59.351	61.111	0.00	0.00	0.00	3.53
1620	2614	1.006571	GTCTCCTCGCACGTCCAAA	60.007	57.895	0.00	0.00	0.00	3.28
1621	2615	0.599204	GTCTCCTCGCACGTCCAAAA	60.599	55.000	0.00	0.00	0.00	2.44
1624	2766	2.549282	CTCGCACGTCCAAAACCG	59.451	61.111	0.00	0.00	0.00	4.44
1634	2776	2.419021	CGTCCAAAACCGGCTAGGATAA	60.419	50.000	0.00	0.00	45.00	1.75
1646	2794	5.182760	CCGGCTAGGATAACGAGTATAAGTT	59.817	44.000	0.00	0.00	45.00	2.66
1650	2798	7.361971	GGCTAGGATAACGAGTATAAGTTCCTC	60.362	44.444	0.00	0.00	30.43	3.71
1677	2825	4.686191	ATGGTTTTCTGCATTTGGTTGA	57.314	36.364	0.00	0.00	0.00	3.18
1682	2830	5.291971	GTTTTCTGCATTTGGTTGACATCT	58.708	37.500	0.00	0.00	0.00	2.90
1761	2913	2.288961	CCATGCAATCTGTTTGGCTC	57.711	50.000	0.00	0.00	35.75	4.70
1762	2914	1.822990	CCATGCAATCTGTTTGGCTCT	59.177	47.619	0.00	0.00	35.75	4.09
1763	2915	3.018856	CCATGCAATCTGTTTGGCTCTA	58.981	45.455	0.00	0.00	35.75	2.43
1816	2971	3.500680	TGTCTCAAGGGCGTTTGTATTTC	59.499	43.478	0.00	0.00	0.00	2.17
1891	3046	1.405872	ACGACAGTGAAGTGTGGGTA	58.594	50.000	0.00	0.00	30.89	3.69
1909	3064	3.000727	GGTATTGAAGCACAGCGTTAGT	58.999	45.455	0.00	0.00	0.00	2.24
1944	3099	3.801114	TGGAGTGAAGTATGTCCATCG	57.199	47.619	0.00	0.00	34.03	3.84
1964	3119	3.264706	TCGGGGAATCAGGTTTCACATTA	59.735	43.478	0.00	0.00	30.26	1.90
1974	3129	2.365582	GTTTCACATTATCGCCCACCT	58.634	47.619	0.00	0.00	0.00	4.00
2024	10885	2.655090	TGGGCATGACAAAGAACTCA	57.345	45.000	0.00	0.00	0.00	3.41
2057	10918	2.436417	TGGATAGTGGAAAAGTGCAGC	58.564	47.619	0.00	0.00	0.00	5.25
2066	10927	1.589716	AAAAGTGCAGCTCATCCGCC	61.590	55.000	0.00	0.00	0.00	6.13
2096	10957	1.994399	TGGTTCCATGGGACCCTATT	58.006	50.000	35.41	0.00	35.15	1.73
2289	11174	3.244875	TGTCGGGTGTACTCTGTAACCTA	60.245	47.826	0.00	0.00	33.02	3.08
2311	11196	4.929146	ACTTTATGGGGCTAACTGTTCT	57.071	40.909	0.00	0.00	0.00	3.01
2437	11341	5.883673	TGGAGCTACCATTTATTTGTACCAC	59.116	40.000	0.00	0.00	44.64	4.16
2476	11381	1.270550	CCAGATTGTTGTGTTGGGCTC	59.729	52.381	0.00	0.00	0.00	4.70
2505	11413	8.058847	AGTGGATGCCCTCTTTTACAAATATTA	58.941	33.333	0.00	0.00	32.69	0.98
2568	11722	7.445402	AGCTATGTAATTGTATGGGCAGTAAAG	59.555	37.037	0.00	0.00	0.00	1.85
2642	11796	5.645497	AGAGCATGTGAGTTTATGTTCCTTC	59.355	40.000	0.00	0.00	35.81	3.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
268	1155	6.830873	ACTCCATCTCCTTTCTCAAAATTG	57.169	37.500	0.00	0.00	0.00	2.32
297	1184	9.627123	TGGAGATCGGTTAAAAATGAGATAAAT	57.373	29.630	0.00	0.00	0.00	1.40
316	1203	3.181459	GGGGAGCTAAGTTCTTGGAGATC	60.181	52.174	0.00	0.00	0.00	2.75
447	1335	4.314740	TTGAATTGTTGCACACCTAACC	57.685	40.909	0.00	0.00	0.00	2.85
452	1340	5.049167	TGAATCTTTGAATTGTTGCACACC	58.951	37.500	0.00	0.00	0.00	4.16
475	1363	6.127730	CCTCCTTAAGCATTTTAACCATCGTT	60.128	38.462	0.00	0.00	35.90	3.85
480	1368	5.636123	TGTCCTCCTTAAGCATTTTAACCA	58.364	37.500	0.00	0.00	0.00	3.67
481	1369	6.584185	TTGTCCTCCTTAAGCATTTTAACC	57.416	37.500	0.00	0.00	0.00	2.85
575	1463	7.951347	AAGAATGGATATTGCTTCTGTTTCT	57.049	32.000	0.00	0.00	0.00	2.52
581	1469	9.301897	GGGTAATAAAGAATGGATATTGCTTCT	57.698	33.333	0.00	0.00	0.00	2.85
582	1470	9.301897	AGGGTAATAAAGAATGGATATTGCTTC	57.698	33.333	0.00	0.00	0.00	3.86
584	1472	9.740710	GTAGGGTAATAAAGAATGGATATTGCT	57.259	33.333	0.00	0.00	0.00	3.91
592	1480	8.919777	CCTAAAGGTAGGGTAATAAAGAATGG	57.080	38.462	0.00	0.00	43.07	3.16
767	1658	5.949354	GGCTGTACAGAGGACTAGATCATAT	59.051	44.000	27.08	0.00	0.00	1.78
781	1672	2.755655	GCTTCTGTCTAGGCTGTACAGA	59.244	50.000	27.08	22.44	45.87	3.41
792	1683	0.610174	CTGTGCTGGGCTTCTGTCTA	59.390	55.000	0.00	0.00	0.00	2.59
796	1687	0.393402	TATGCTGTGCTGGGCTTCTG	60.393	55.000	0.00	0.00	0.00	3.02
798	1689	0.393537	AGTATGCTGTGCTGGGCTTC	60.394	55.000	0.00	0.00	0.00	3.86
843	1734	6.463331	GGAAGACGGGGGAAGTTTTTATTTTT	60.463	38.462	0.00	0.00	0.00	1.94
844	1735	5.011329	GGAAGACGGGGGAAGTTTTTATTTT	59.989	40.000	0.00	0.00	0.00	1.82
845	1736	4.525487	GGAAGACGGGGGAAGTTTTTATTT	59.475	41.667	0.00	0.00	0.00	1.40
846	1737	4.084287	GGAAGACGGGGGAAGTTTTTATT	58.916	43.478	0.00	0.00	0.00	1.40
847	1738	3.074836	TGGAAGACGGGGGAAGTTTTTAT	59.925	43.478	0.00	0.00	0.00	1.40
848	1739	2.442502	TGGAAGACGGGGGAAGTTTTTA	59.557	45.455	0.00	0.00	0.00	1.52
849	1740	1.215924	TGGAAGACGGGGGAAGTTTTT	59.784	47.619	0.00	0.00	0.00	1.94
850	1741	0.848053	TGGAAGACGGGGGAAGTTTT	59.152	50.000	0.00	0.00	0.00	2.43
851	1742	0.400594	CTGGAAGACGGGGGAAGTTT	59.599	55.000	0.00	0.00	34.07	2.66
852	1743	0.767060	ACTGGAAGACGGGGGAAGTT	60.767	55.000	0.00	0.00	37.43	2.66
881	1772	1.439644	GGCGAGATGAGGTGAGGTC	59.560	63.158	0.00	0.00	0.00	3.85
1614	2608	2.941064	GTTATCCTAGCCGGTTTTGGAC	59.059	50.000	13.31	1.17	0.00	4.02
1619	2613	2.105766	ACTCGTTATCCTAGCCGGTTT	58.894	47.619	1.90	0.00	0.00	3.27
1620	2614	1.772836	ACTCGTTATCCTAGCCGGTT	58.227	50.000	1.90	0.00	0.00	4.44
1621	2615	2.645838	TACTCGTTATCCTAGCCGGT	57.354	50.000	1.90	0.00	0.00	5.28
1624	2766	6.433716	AGGAACTTATACTCGTTATCCTAGCC	59.566	42.308	0.00	0.00	27.25	3.93
1634	2776	3.362706	TGCCAGAGGAACTTATACTCGT	58.637	45.455	0.00	0.00	41.55	4.18
1646	2794	2.517959	CAGAAAACCATTGCCAGAGGA	58.482	47.619	0.00	0.00	0.00	3.71
1650	2798	2.754946	ATGCAGAAAACCATTGCCAG	57.245	45.000	0.00	0.00	37.03	4.85
1677	2825	2.217038	ACCACCGCAGACCAGATGT	61.217	57.895	0.00	0.00	0.00	3.06
1682	2830	4.248842	CACCACCACCGCAGACCA	62.249	66.667	0.00	0.00	0.00	4.02
1760	2912	4.038042	CCCGACAGCAAGATCTATTGTAGA	59.962	45.833	0.00	0.00	39.50	2.59
1761	2913	4.202161	ACCCGACAGCAAGATCTATTGTAG	60.202	45.833	0.00	1.83	32.56	2.74
1762	2914	3.704566	ACCCGACAGCAAGATCTATTGTA	59.295	43.478	0.00	0.00	32.56	2.41
1763	2915	2.501723	ACCCGACAGCAAGATCTATTGT	59.498	45.455	0.00	0.67	32.56	2.71
1816	2971	7.806014	TGACAATCATGATGATCAATATTTGCG	59.194	33.333	9.46	0.00	35.76	4.85
1891	3046	2.076863	GGACTAACGCTGTGCTTCAAT	58.923	47.619	0.00	0.00	0.00	2.57
1909	3064	6.043243	ACTTCACTCCAAGTAGATCAAAAGGA	59.957	38.462	0.00	0.00	34.70	3.36
1944	3099	4.275936	CGATAATGTGAAACCTGATTCCCC	59.724	45.833	0.00	0.00	34.36	4.81
1974	3129	1.529226	AATCATGTTTCGTTGCGGGA	58.471	45.000	0.00	0.00	0.00	5.14
2024	10885	9.699410	TTTTCCACTATCCATTTCATAAGACAT	57.301	29.630	0.00	0.00	0.00	3.06
2057	10918	2.042686	TTTCCAAGATGGCGGATGAG	57.957	50.000	0.00	0.00	37.47	2.90
2096	10957	5.484715	CGAGTACAAGGGAACATAAGGAAA	58.515	41.667	0.00	0.00	0.00	3.13
2165	11032	4.286297	TCTGAAAGGTCGACAATGGAAT	57.714	40.909	18.91	0.00	0.00	3.01
2289	11174	5.256806	AGAACAGTTAGCCCCATAAAGTT	57.743	39.130	0.00	0.00	0.00	2.66
2311	11196	6.793349	GCAGCTAGCACTACTAAGTTAACTA	58.207	40.000	18.83	0.00	44.79	2.24
2437	11341	0.110056	GACATCACAAACAGCAGCCG	60.110	55.000	0.00	0.00	0.00	5.52
2476	11381	4.843728	TGTAAAAGAGGGCATCCACTAAG	58.156	43.478	0.00	0.00	32.69	2.18
2568	11722	5.357742	AAAACATAAATTCCCTCCCATGC	57.642	39.130	0.00	0.00	0.00	4.06
2642	11796	3.189080	TCATTTCAACATTGACAGGAGCG	59.811	43.478	0.00	0.00	36.83	5.03

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.