Multiple sequence alignment - TraesCS7B01G021600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G021600 chr7B 100.000 2962 0 0 1 2962 19957859 19954898 0.000000e+00 5470.0
1 TraesCS7B01G021600 chr1D 86.913 1490 97 51 807 2233 460187854 460186400 0.000000e+00 1581.0
2 TraesCS7B01G021600 chr1D 88.050 477 40 10 2057 2521 393953224 393952753 1.550000e-152 549.0
3 TraesCS7B01G021600 chr1D 81.967 244 28 6 534 776 460188076 460187848 3.010000e-45 193.0
4 TraesCS7B01G021600 chr1D 89.744 78 5 2 2738 2812 460185833 460185756 2.430000e-16 97.1
5 TraesCS7B01G021600 chr3B 88.729 1322 90 27 955 2233 733600688 733601993 0.000000e+00 1561.0
6 TraesCS7B01G021600 chr3B 85.841 113 15 1 5 116 242006175 242006287 5.190000e-23 119.0
7 TraesCS7B01G021600 chr3B 84.167 120 17 2 2 120 7618443 7618325 6.710000e-22 115.0
8 TraesCS7B01G021600 chr3B 84.615 117 16 2 5 120 401751114 401750999 6.710000e-22 115.0
9 TraesCS7B01G021600 chr3B 83.478 115 17 2 7 120 401752355 401752468 4.040000e-19 106.0
10 TraesCS7B01G021600 chr2D 85.988 1513 96 47 822 2235 488995682 488994187 0.000000e+00 1513.0
11 TraesCS7B01G021600 chr2D 87.176 655 58 15 120 757 488996379 488995734 0.000000e+00 721.0
12 TraesCS7B01G021600 chr2D 84.236 628 68 10 2220 2821 488994170 488993548 1.530000e-162 582.0
13 TraesCS7B01G021600 chr2D 80.000 830 102 34 1015 1835 489009867 489009093 3.340000e-154 555.0
14 TraesCS7B01G021600 chr2D 87.671 292 30 4 2480 2766 489008348 489008058 4.730000e-88 335.0
15 TraesCS7B01G021600 chr3A 87.146 1377 93 36 911 2233 689073073 689074419 0.000000e+00 1485.0
16 TraesCS7B01G021600 chr3A 80.600 500 84 8 976 1468 689007193 689007686 1.000000e-99 374.0
17 TraesCS7B01G021600 chr3A 85.821 268 34 3 2547 2811 689074843 689075109 6.250000e-72 281.0
18 TraesCS7B01G021600 chr3D 85.400 1500 106 43 514 1967 552769543 552770975 0.000000e+00 1452.0
19 TraesCS7B01G021600 chr3D 88.618 492 26 9 1318 1799 32390187 32389716 3.310000e-159 571.0
20 TraesCS7B01G021600 chr3D 81.836 501 78 13 972 1468 552755130 552755621 2.750000e-110 409.0
21 TraesCS7B01G021600 chr3D 86.940 268 31 3 2547 2811 552771767 552772033 6.210000e-77 298.0
22 TraesCS7B01G021600 chr5D 85.368 1073 84 28 1509 2521 397474858 397473799 0.000000e+00 1044.0
23 TraesCS7B01G021600 chr5D 84.078 1074 97 29 1509 2521 397464915 397465975 0.000000e+00 968.0
24 TraesCS7B01G021600 chr5D 89.189 481 24 7 1327 1799 521253778 521254238 2.560000e-160 575.0
25 TraesCS7B01G021600 chr5D 88.470 477 39 8 2057 2521 375000929 375001401 1.990000e-156 562.0
26 TraesCS7B01G021600 chr6B 83.738 1070 100 27 1513 2521 666362615 666361559 0.000000e+00 944.0
27 TraesCS7B01G021600 chr6B 85.754 358 41 7 2184 2536 252551420 252551068 1.300000e-98 370.0
28 TraesCS7B01G021600 chr6B 86.087 115 14 2 7 120 123863440 123863327 4.010000e-24 122.0
29 TraesCS7B01G021600 chr6B 83.478 115 17 2 7 120 123864685 123864798 4.040000e-19 106.0
30 TraesCS7B01G021600 chr1A 82.094 1089 87 55 1200 2233 551740046 551739011 0.000000e+00 832.0
31 TraesCS7B01G021600 chr1A 89.228 492 38 6 1314 1799 567966427 567965945 4.220000e-168 601.0
32 TraesCS7B01G021600 chr2B 82.943 768 56 35 2070 2814 759273328 759272613 9.020000e-175 623.0
33 TraesCS7B01G021600 chr2B 87.318 481 42 11 2053 2521 574051059 574051532 1.560000e-147 532.0
34 TraesCS7B01G021600 chr2B 83.119 545 68 13 964 1501 759274408 759273881 2.670000e-130 475.0
35 TraesCS7B01G021600 chr2B 80.952 147 24 3 2672 2814 680916654 680916508 2.410000e-21 113.0
36 TraesCS7B01G021600 chr6A 89.144 479 26 6 1327 1799 66266940 66267398 9.210000e-160 573.0
37 TraesCS7B01G021600 chr6A 91.139 79 7 0 2736 2814 162859885 162859807 1.120000e-19 108.0
38 TraesCS7B01G021600 chr5B 88.935 479 27 6 1327 1799 663517582 663518040 4.280000e-158 568.0
39 TraesCS7B01G021600 chr5B 86.806 144 19 0 2092 2235 676859038 676858895 8.500000e-36 161.0
40 TraesCS7B01G021600 chr4A 85.714 532 45 6 1508 2013 444375679 444376205 1.560000e-147 532.0
41 TraesCS7B01G021600 chr4A 87.619 105 11 2 17 120 90415065 90415168 1.440000e-23 121.0
42 TraesCS7B01G021600 chr4A 86.111 108 14 1 2 108 4227056 4227163 6.710000e-22 115.0
43 TraesCS7B01G021600 chr2A 85.650 223 27 4 2596 2814 619559879 619560100 2.300000e-56 230.0
44 TraesCS7B01G021600 chr7A 85.217 115 15 2 7 120 518628542 518628655 1.870000e-22 117.0
45 TraesCS7B01G021600 chr5A 80.272 147 24 3 2672 2814 183028619 183028474 4.040000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G021600 chr7B 19954898 19957859 2961 True 5470.000000 5470 100.0000 1 2962 1 chr7B.!!$R1 2961
1 TraesCS7B01G021600 chr1D 460185756 460188076 2320 True 623.700000 1581 86.2080 534 2812 3 chr1D.!!$R2 2278
2 TraesCS7B01G021600 chr3B 733600688 733601993 1305 False 1561.000000 1561 88.7290 955 2233 1 chr3B.!!$F3 1278
3 TraesCS7B01G021600 chr2D 488993548 488996379 2831 True 938.666667 1513 85.8000 120 2821 3 chr2D.!!$R1 2701
4 TraesCS7B01G021600 chr2D 489008058 489009867 1809 True 445.000000 555 83.8355 1015 2766 2 chr2D.!!$R2 1751
5 TraesCS7B01G021600 chr3A 689073073 689075109 2036 False 883.000000 1485 86.4835 911 2811 2 chr3A.!!$F2 1900
6 TraesCS7B01G021600 chr3D 552769543 552772033 2490 False 875.000000 1452 86.1700 514 2811 2 chr3D.!!$F2 2297
7 TraesCS7B01G021600 chr5D 397473799 397474858 1059 True 1044.000000 1044 85.3680 1509 2521 1 chr5D.!!$R1 1012
8 TraesCS7B01G021600 chr5D 397464915 397465975 1060 False 968.000000 968 84.0780 1509 2521 1 chr5D.!!$F2 1012
9 TraesCS7B01G021600 chr6B 666361559 666362615 1056 True 944.000000 944 83.7380 1513 2521 1 chr6B.!!$R3 1008
10 TraesCS7B01G021600 chr1A 551739011 551740046 1035 True 832.000000 832 82.0940 1200 2233 1 chr1A.!!$R1 1033
11 TraesCS7B01G021600 chr2B 759272613 759274408 1795 True 549.000000 623 83.0310 964 2814 2 chr2B.!!$R2 1850
12 TraesCS7B01G021600 chr4A 444375679 444376205 526 False 532.000000 532 85.7140 1508 2013 1 chr4A.!!$F3 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.036732 CAACTAACAGCAGAGGGGCA 59.963 55.0 0.00 0.0 35.83 5.36 F
575 584 0.036732 TGAACAGGCCACTCCATGTC 59.963 55.0 5.01 0.0 37.29 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 1991 0.182061 ACCTCGGAGATGTAGGCGTA 59.818 55.0 6.58 0.00 32.56 4.42 R
2098 2585 0.602905 AAATAGATAGCCACGGCCGC 60.603 55.0 28.58 9.48 43.17 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.143194 GGTTAAAGCTCTTTGACCGAAC 57.857 45.455 16.95 7.98 45.16 3.95
28 29 3.363673 GGTTAAAGCTCTTTGACCGAACG 60.364 47.826 16.95 0.00 45.16 3.95
29 30 1.226746 AAAGCTCTTTGACCGAACGG 58.773 50.000 11.83 11.83 42.03 4.44
30 31 2.224113 TAAAGCTCTTTGACCGAACGGT 60.224 45.455 18.83 18.83 41.44 4.83
31 32 3.005684 TAAAGCTCTTTGACCGAACGGTA 59.994 43.478 18.79 1.67 40.10 4.02
32 33 4.501229 TAAAGCTCTTTGACCGAACGGTAA 60.501 41.667 18.79 9.22 40.10 2.85
33 34 6.301990 TAAAGCTCTTTGACCGAACGGTAAG 61.302 44.000 18.79 18.03 40.10 2.34
44 45 4.553323 CCGAACGGTAAGGTATAGAATGG 58.447 47.826 4.99 0.00 0.00 3.16
45 46 3.985925 CGAACGGTAAGGTATAGAATGGC 59.014 47.826 0.00 0.00 0.00 4.40
46 47 4.500205 CGAACGGTAAGGTATAGAATGGCA 60.500 45.833 0.00 0.00 0.00 4.92
47 48 5.548406 GAACGGTAAGGTATAGAATGGCAT 58.452 41.667 0.00 0.00 0.00 4.40
48 49 5.562298 ACGGTAAGGTATAGAATGGCATT 57.438 39.130 13.54 13.54 0.00 3.56
49 50 5.937111 ACGGTAAGGTATAGAATGGCATTT 58.063 37.500 14.93 7.10 0.00 2.32
50 51 5.995897 ACGGTAAGGTATAGAATGGCATTTC 59.004 40.000 14.93 7.76 0.00 2.17
51 52 6.183361 ACGGTAAGGTATAGAATGGCATTTCT 60.183 38.462 14.93 14.29 39.28 2.52
52 53 7.015877 ACGGTAAGGTATAGAATGGCATTTCTA 59.984 37.037 14.93 15.84 41.23 2.10
53 54 8.041323 CGGTAAGGTATAGAATGGCATTTCTAT 58.959 37.037 23.30 23.30 46.00 1.98
57 58 9.965902 AAGGTATAGAATGGCATTTCTATAAGG 57.034 33.333 24.69 0.00 45.71 2.69
58 59 8.552296 AGGTATAGAATGGCATTTCTATAAGGG 58.448 37.037 24.69 0.00 45.71 3.95
59 60 7.283354 GGTATAGAATGGCATTTCTATAAGGGC 59.717 40.741 24.69 17.82 45.71 5.19
60 61 5.065613 AGAATGGCATTTCTATAAGGGCA 57.934 39.130 14.93 1.09 34.21 5.36
61 62 5.457686 AGAATGGCATTTCTATAAGGGCAA 58.542 37.500 14.93 0.00 37.58 4.52
62 63 5.302823 AGAATGGCATTTCTATAAGGGCAAC 59.697 40.000 14.93 0.00 37.58 4.17
63 64 4.249638 TGGCATTTCTATAAGGGCAACT 57.750 40.909 0.00 0.00 0.00 3.16
64 65 5.381184 TGGCATTTCTATAAGGGCAACTA 57.619 39.130 0.00 0.00 0.00 2.24
65 66 5.761205 TGGCATTTCTATAAGGGCAACTAA 58.239 37.500 0.00 0.00 0.00 2.24
66 67 5.592688 TGGCATTTCTATAAGGGCAACTAAC 59.407 40.000 0.00 0.00 0.00 2.34
67 68 5.592688 GGCATTTCTATAAGGGCAACTAACA 59.407 40.000 0.00 0.00 0.00 2.41
68 69 6.238759 GGCATTTCTATAAGGGCAACTAACAG 60.239 42.308 0.00 0.00 0.00 3.16
69 70 6.729187 CATTTCTATAAGGGCAACTAACAGC 58.271 40.000 0.00 0.00 0.00 4.40
70 71 5.429681 TTCTATAAGGGCAACTAACAGCA 57.570 39.130 0.00 0.00 0.00 4.41
71 72 5.023533 TCTATAAGGGCAACTAACAGCAG 57.976 43.478 0.00 0.00 0.00 4.24
72 73 4.714802 TCTATAAGGGCAACTAACAGCAGA 59.285 41.667 0.00 0.00 0.00 4.26
73 74 2.191128 AAGGGCAACTAACAGCAGAG 57.809 50.000 0.00 0.00 0.00 3.35
74 75 0.326264 AGGGCAACTAACAGCAGAGG 59.674 55.000 0.00 0.00 0.00 3.69
75 76 0.678048 GGGCAACTAACAGCAGAGGG 60.678 60.000 0.00 0.00 0.00 4.30
76 77 0.678048 GGCAACTAACAGCAGAGGGG 60.678 60.000 0.00 0.00 0.00 4.79
77 78 1.308783 GCAACTAACAGCAGAGGGGC 61.309 60.000 0.00 0.00 0.00 5.80
78 79 0.036732 CAACTAACAGCAGAGGGGCA 59.963 55.000 0.00 0.00 35.83 5.36
79 80 0.771127 AACTAACAGCAGAGGGGCAA 59.229 50.000 0.00 0.00 35.83 4.52
80 81 0.771127 ACTAACAGCAGAGGGGCAAA 59.229 50.000 0.00 0.00 35.83 3.68
81 82 1.355720 ACTAACAGCAGAGGGGCAAAT 59.644 47.619 0.00 0.00 35.83 2.32
82 83 2.225117 ACTAACAGCAGAGGGGCAAATT 60.225 45.455 0.00 0.00 35.83 1.82
83 84 1.720781 AACAGCAGAGGGGCAAATTT 58.279 45.000 0.00 0.00 35.83 1.82
84 85 0.971386 ACAGCAGAGGGGCAAATTTG 59.029 50.000 14.03 14.03 35.83 2.32
85 86 1.259609 CAGCAGAGGGGCAAATTTGA 58.740 50.000 22.31 0.00 35.83 2.69
86 87 1.203994 CAGCAGAGGGGCAAATTTGAG 59.796 52.381 22.31 0.00 35.83 3.02
87 88 1.203100 AGCAGAGGGGCAAATTTGAGT 60.203 47.619 22.31 2.19 35.83 3.41
88 89 2.041620 AGCAGAGGGGCAAATTTGAGTA 59.958 45.455 22.31 0.00 35.83 2.59
89 90 3.026694 GCAGAGGGGCAAATTTGAGTAT 58.973 45.455 22.31 4.34 0.00 2.12
90 91 3.181483 GCAGAGGGGCAAATTTGAGTATG 60.181 47.826 22.31 12.00 0.00 2.39
91 92 3.026694 AGAGGGGCAAATTTGAGTATGC 58.973 45.455 22.31 5.66 38.06 3.14
92 93 3.026694 GAGGGGCAAATTTGAGTATGCT 58.973 45.455 22.31 0.00 38.79 3.79
93 94 3.444029 AGGGGCAAATTTGAGTATGCTT 58.556 40.909 22.31 0.00 38.79 3.91
94 95 3.840078 AGGGGCAAATTTGAGTATGCTTT 59.160 39.130 22.31 0.00 38.79 3.51
95 96 3.934579 GGGGCAAATTTGAGTATGCTTTG 59.065 43.478 22.31 0.00 38.79 2.77
96 97 4.322650 GGGGCAAATTTGAGTATGCTTTGA 60.323 41.667 22.31 0.00 38.79 2.69
97 98 5.237048 GGGCAAATTTGAGTATGCTTTGAA 58.763 37.500 22.31 0.00 38.79 2.69
98 99 5.700373 GGGCAAATTTGAGTATGCTTTGAAA 59.300 36.000 22.31 0.00 38.79 2.69
99 100 6.372381 GGGCAAATTTGAGTATGCTTTGAAAT 59.628 34.615 22.31 0.00 38.79 2.17
100 101 7.094677 GGGCAAATTTGAGTATGCTTTGAAATT 60.095 33.333 22.31 1.39 38.79 1.82
101 102 8.934825 GGCAAATTTGAGTATGCTTTGAAATTA 58.065 29.630 22.31 0.00 38.79 1.40
102 103 9.962759 GCAAATTTGAGTATGCTTTGAAATTAG 57.037 29.630 22.31 0.00 35.93 1.73
104 105 9.657419 AAATTTGAGTATGCTTTGAAATTAGGG 57.343 29.630 8.50 0.00 0.00 3.53
105 106 6.773976 TTGAGTATGCTTTGAAATTAGGGG 57.226 37.500 0.00 0.00 0.00 4.79
106 107 4.644685 TGAGTATGCTTTGAAATTAGGGGC 59.355 41.667 0.00 0.00 0.00 5.80
107 108 4.609301 AGTATGCTTTGAAATTAGGGGCA 58.391 39.130 0.00 0.00 0.00 5.36
108 109 5.022787 AGTATGCTTTGAAATTAGGGGCAA 58.977 37.500 0.00 0.00 0.00 4.52
109 110 4.906747 ATGCTTTGAAATTAGGGGCAAA 57.093 36.364 0.00 0.00 0.00 3.68
110 111 4.906747 TGCTTTGAAATTAGGGGCAAAT 57.093 36.364 0.00 0.00 30.79 2.32
111 112 4.831107 TGCTTTGAAATTAGGGGCAAATC 58.169 39.130 0.00 0.00 30.79 2.17
112 113 4.531732 TGCTTTGAAATTAGGGGCAAATCT 59.468 37.500 0.00 0.00 30.79 2.40
113 114 4.872124 GCTTTGAAATTAGGGGCAAATCTG 59.128 41.667 0.00 0.00 30.79 2.90
114 115 5.337491 GCTTTGAAATTAGGGGCAAATCTGA 60.337 40.000 0.00 0.00 30.79 3.27
115 116 5.920193 TTGAAATTAGGGGCAAATCTGAG 57.080 39.130 0.00 0.00 0.00 3.35
116 117 4.280819 TGAAATTAGGGGCAAATCTGAGG 58.719 43.478 0.00 0.00 0.00 3.86
117 118 4.264352 TGAAATTAGGGGCAAATCTGAGGT 60.264 41.667 0.00 0.00 0.00 3.85
118 119 5.044476 TGAAATTAGGGGCAAATCTGAGGTA 60.044 40.000 0.00 0.00 0.00 3.08
147 148 4.678256 ACTTCAGGAGAGAATGACAGGTA 58.322 43.478 0.00 0.00 0.00 3.08
148 149 4.709397 ACTTCAGGAGAGAATGACAGGTAG 59.291 45.833 0.00 0.00 0.00 3.18
150 151 2.028130 AGGAGAGAATGACAGGTAGCG 58.972 52.381 0.00 0.00 0.00 4.26
152 153 0.461961 AGAGAATGACAGGTAGCGCC 59.538 55.000 2.29 0.00 37.58 6.53
153 154 0.872021 GAGAATGACAGGTAGCGCCG 60.872 60.000 2.29 0.00 43.70 6.46
158 159 1.286260 GACAGGTAGCGCCGGATAG 59.714 63.158 5.05 0.00 43.70 2.08
159 160 2.049063 CAGGTAGCGCCGGATAGC 60.049 66.667 5.05 7.36 43.70 2.97
190 192 1.933853 CGGGATCGACATGAGTTTTCC 59.066 52.381 0.00 0.00 39.00 3.13
203 208 4.489393 TGAGTTTTCCTCAGCTTTTGCGT 61.489 43.478 0.00 0.00 45.34 5.24
217 222 4.201685 GCTTTTGCGTGAAGTATGTATCGT 60.202 41.667 0.00 0.00 34.86 3.73
224 229 4.421058 GTGAAGTATGTATCGTGTGCTCA 58.579 43.478 0.00 0.00 0.00 4.26
234 239 2.027073 GTGTGCTCACCAATCGCGA 61.027 57.895 13.09 13.09 38.51 5.87
249 254 0.744874 CGCGATCTGGGTAGAAGGAA 59.255 55.000 0.00 0.00 36.32 3.36
265 271 1.684734 GAACCCTAGACCCGGAGCA 60.685 63.158 0.73 0.00 0.00 4.26
278 284 2.203015 GAGCAAATCCCGCGGCTA 60.203 61.111 22.85 10.78 36.59 3.93
281 287 2.189521 CAAATCCCGCGGCTACCT 59.810 61.111 22.85 0.00 0.00 3.08
296 302 1.035932 TACCTCCCTCGCTTCCTTCG 61.036 60.000 0.00 0.00 0.00 3.79
302 308 1.432270 CCTCGCTTCCTTCGCAATCC 61.432 60.000 0.00 0.00 0.00 3.01
339 345 2.303549 CTTCCTCCGCGCCTCTGAAT 62.304 60.000 0.00 0.00 0.00 2.57
353 359 7.518370 CGCGCCTCTGAATAATAAAAGTTACAT 60.518 37.037 0.00 0.00 0.00 2.29
370 376 4.500265 TCAAAGTGCTTGAGGGGC 57.500 55.556 0.00 0.00 39.20 5.80
393 399 1.339929 GGTCGGCCAAAATCACTGTTT 59.660 47.619 0.00 0.00 34.09 2.83
423 429 3.359695 TGGGGTAAGTTTAGCACCATC 57.640 47.619 1.30 0.00 33.77 3.51
424 430 2.916934 TGGGGTAAGTTTAGCACCATCT 59.083 45.455 1.30 0.00 33.77 2.90
425 431 3.279434 GGGGTAAGTTTAGCACCATCTG 58.721 50.000 3.80 0.00 33.78 2.90
426 432 3.054655 GGGGTAAGTTTAGCACCATCTGA 60.055 47.826 3.80 0.00 33.78 3.27
427 433 3.939592 GGGTAAGTTTAGCACCATCTGAC 59.060 47.826 3.80 0.00 33.78 3.51
479 488 1.159713 TGCTGGTGCACTGAGAAACG 61.160 55.000 17.98 0.00 45.31 3.60
480 489 1.571460 CTGGTGCACTGAGAAACGC 59.429 57.895 17.98 0.00 0.00 4.84
488 497 2.413371 GCACTGAGAAACGCCAAATCTC 60.413 50.000 0.00 0.00 39.98 2.75
525 534 1.444119 GGCAACACCAAAGCTCACGA 61.444 55.000 0.00 0.00 38.86 4.35
570 579 0.322008 CCTCTTGAACAGGCCACTCC 60.322 60.000 5.01 0.00 0.00 3.85
575 584 0.036732 TGAACAGGCCACTCCATGTC 59.963 55.000 5.01 0.00 37.29 3.06
576 585 0.678048 GAACAGGCCACTCCATGTCC 60.678 60.000 5.01 0.00 37.29 4.02
577 586 2.142292 AACAGGCCACTCCATGTCCC 62.142 60.000 5.01 0.00 37.29 4.46
578 587 2.125912 AGGCCACTCCATGTCCCT 59.874 61.111 5.01 0.00 37.29 4.20
579 588 1.542375 AGGCCACTCCATGTCCCTT 60.542 57.895 5.01 0.00 37.29 3.95
591 600 1.198759 TGTCCCTTCCCTAGGTGTGC 61.199 60.000 8.29 0.00 43.07 4.57
594 603 1.604378 CCTTCCCTAGGTGTGCCTG 59.396 63.158 8.29 0.00 46.47 4.85
606 618 1.154225 GTGCCTGTTTTCGCGGATG 60.154 57.895 6.13 0.00 0.00 3.51
611 623 2.350964 GCCTGTTTTCGCGGATGTTTTA 60.351 45.455 6.13 0.00 0.00 1.52
612 624 3.854045 GCCTGTTTTCGCGGATGTTTTAA 60.854 43.478 6.13 0.00 0.00 1.52
613 625 3.666797 CCTGTTTTCGCGGATGTTTTAAC 59.333 43.478 6.13 0.00 0.00 2.01
614 626 4.533222 CTGTTTTCGCGGATGTTTTAACT 58.467 39.130 6.13 0.00 0.00 2.24
615 627 4.283678 TGTTTTCGCGGATGTTTTAACTG 58.716 39.130 6.13 0.00 0.00 3.16
644 656 4.024556 CGCCAAGATGAATGTAGATCCAAC 60.025 45.833 0.00 0.00 0.00 3.77
710 729 2.567497 CCACCTTGCTTGGCACCAG 61.567 63.158 0.00 0.00 38.71 4.00
744 763 9.558396 TTGTATGGAGAAGCATTTTCAAATTTT 57.442 25.926 0.00 0.00 0.00 1.82
760 779 7.411486 TCAAATTTTGAAAACCACACCTAGA 57.589 32.000 9.36 0.00 36.59 2.43
762 781 8.482128 TCAAATTTTGAAAACCACACCTAGATT 58.518 29.630 9.36 0.00 36.59 2.40
764 783 5.782893 TTTGAAAACCACACCTAGATTGG 57.217 39.130 0.00 0.00 36.39 3.16
765 784 4.447138 TGAAAACCACACCTAGATTGGT 57.553 40.909 4.51 4.51 45.95 3.67
766 785 5.570205 TGAAAACCACACCTAGATTGGTA 57.430 39.130 9.52 0.00 43.08 3.25
767 786 5.556915 TGAAAACCACACCTAGATTGGTAG 58.443 41.667 9.52 0.00 43.08 3.18
768 787 3.629142 AACCACACCTAGATTGGTAGC 57.371 47.619 9.52 0.00 43.08 3.58
769 788 1.480954 ACCACACCTAGATTGGTAGCG 59.519 52.381 7.82 0.00 42.04 4.26
770 789 1.202533 CCACACCTAGATTGGTAGCGG 60.203 57.143 0.00 0.00 38.45 5.52
771 790 1.754803 CACACCTAGATTGGTAGCGGA 59.245 52.381 0.00 0.00 38.45 5.54
772 791 2.032620 ACACCTAGATTGGTAGCGGAG 58.967 52.381 0.00 0.00 38.45 4.63
773 792 1.341531 CACCTAGATTGGTAGCGGAGG 59.658 57.143 0.00 0.00 38.45 4.30
774 793 0.969894 CCTAGATTGGTAGCGGAGGG 59.030 60.000 0.00 0.00 0.00 4.30
775 794 1.480683 CCTAGATTGGTAGCGGAGGGA 60.481 57.143 0.00 0.00 0.00 4.20
776 795 1.889829 CTAGATTGGTAGCGGAGGGAG 59.110 57.143 0.00 0.00 0.00 4.30
777 796 1.069935 GATTGGTAGCGGAGGGAGC 59.930 63.158 0.00 0.00 0.00 4.70
778 797 1.686325 GATTGGTAGCGGAGGGAGCA 61.686 60.000 0.00 0.00 37.01 4.26
779 798 1.972660 ATTGGTAGCGGAGGGAGCAC 61.973 60.000 0.00 0.00 37.01 4.40
780 799 4.208686 GGTAGCGGAGGGAGCACG 62.209 72.222 0.00 0.00 37.01 5.34
809 828 1.561076 TGTCCTTGTGGATGGATGGAG 59.439 52.381 0.00 0.00 45.29 3.86
874 917 2.768527 CCTCTGTCCTCTTCAATAGCCA 59.231 50.000 0.00 0.00 0.00 4.75
937 1000 2.037251 TCCAACCTTTCTCTTGTCTCCG 59.963 50.000 0.00 0.00 0.00 4.63
945 1013 1.893801 TCTCTTGTCTCCGTCCTTTCC 59.106 52.381 0.00 0.00 0.00 3.13
1032 1108 1.139853 GGGAGCAAGAAGGACATCGAT 59.860 52.381 0.00 0.00 0.00 3.59
1540 1669 3.359523 CGGACAGGGACGACGACA 61.360 66.667 0.00 0.00 0.00 4.35
1766 1947 2.182030 CGTCCTCTCCCGCTTCAC 59.818 66.667 0.00 0.00 0.00 3.18
1810 1991 2.561885 CCGAGTTCTGCGACGACT 59.438 61.111 0.00 0.00 0.00 4.18
1863 2054 5.690865 TCTCCAAACCTTGCTCTTTTCTTA 58.309 37.500 0.00 0.00 0.00 2.10
1973 2362 3.868757 TCCGATTGACTACTTCACCTG 57.131 47.619 0.00 0.00 32.26 4.00
1994 2437 0.826062 TCGATCAAGCCATGCTCTCA 59.174 50.000 0.00 0.00 38.25 3.27
2098 2585 0.764890 TCAGACTTGTGGTTCCTGGG 59.235 55.000 0.00 0.00 0.00 4.45
2116 2608 1.004918 GCGGCCGTGGCTATCTATT 60.005 57.895 28.70 0.00 41.60 1.73
2169 2690 7.802738 TGTAGTAGTGTAATGTTGATTTGCAC 58.197 34.615 0.00 0.00 31.59 4.57
2238 2807 9.844257 AGCTATCTTAATTAGCTTCATCTGTTT 57.156 29.630 12.15 0.00 43.90 2.83
2265 2916 9.403110 GGATCATGTTTCAATCATATTAGTTGC 57.597 33.333 0.00 0.00 0.00 4.17
2316 2970 4.747810 CATCTTATTTGTGTTTCCCCAGC 58.252 43.478 0.00 0.00 0.00 4.85
2341 2995 7.378461 GCTTGTCAATCATGTTTTCTTTTACGA 59.622 33.333 0.00 0.00 0.00 3.43
2342 2996 9.398170 CTTGTCAATCATGTTTTCTTTTACGAT 57.602 29.630 0.00 0.00 0.00 3.73
2359 3021 2.271800 CGATGCGTAAGAAGAAGGCTT 58.728 47.619 0.00 0.00 43.02 4.35
2362 3024 4.026475 CGATGCGTAAGAAGAAGGCTTTAG 60.026 45.833 0.00 0.00 43.02 1.85
2366 3028 4.689345 GCGTAAGAAGAAGGCTTTAGTTGA 59.311 41.667 0.00 0.00 43.02 3.18
2369 3031 7.254151 GCGTAAGAAGAAGGCTTTAGTTGATAG 60.254 40.741 0.00 0.00 43.02 2.08
2456 3208 5.009410 CCTGTTTATCCAGATTCCAGAATGC 59.991 44.000 0.00 0.00 34.23 3.56
2461 3213 3.614092 TCCAGATTCCAGAATGCTTGAC 58.386 45.455 0.00 0.00 31.97 3.18
2506 3278 6.903883 AAAGTATAGAAGCAACGTACATGG 57.096 37.500 0.00 0.00 0.00 3.66
2526 3328 4.021102 GGTCTGGAACCTTTTGATCTCA 57.979 45.455 0.00 0.00 45.45 3.27
2527 3329 4.006319 GGTCTGGAACCTTTTGATCTCAG 58.994 47.826 0.00 0.00 45.45 3.35
2528 3330 4.505742 GGTCTGGAACCTTTTGATCTCAGT 60.506 45.833 0.00 0.00 45.45 3.41
2529 3331 5.066593 GTCTGGAACCTTTTGATCTCAGTT 58.933 41.667 0.00 0.00 0.00 3.16
2530 3332 5.049129 GTCTGGAACCTTTTGATCTCAGTTG 60.049 44.000 0.00 0.00 0.00 3.16
2531 3333 3.569701 TGGAACCTTTTGATCTCAGTTGC 59.430 43.478 0.00 0.00 0.00 4.17
2532 3334 3.569701 GGAACCTTTTGATCTCAGTTGCA 59.430 43.478 0.00 0.00 0.00 4.08
2533 3335 4.219288 GGAACCTTTTGATCTCAGTTGCAT 59.781 41.667 0.00 0.00 0.00 3.96
2534 3336 5.279156 GGAACCTTTTGATCTCAGTTGCATT 60.279 40.000 0.00 0.00 0.00 3.56
2535 3337 5.130292 ACCTTTTGATCTCAGTTGCATTG 57.870 39.130 0.00 0.00 0.00 2.82
2536 3338 4.586001 ACCTTTTGATCTCAGTTGCATTGT 59.414 37.500 0.00 0.00 0.00 2.71
2537 3339 5.069516 ACCTTTTGATCTCAGTTGCATTGTT 59.930 36.000 0.00 0.00 0.00 2.83
2538 3340 5.987347 CCTTTTGATCTCAGTTGCATTGTTT 59.013 36.000 0.00 0.00 0.00 2.83
2539 3341 6.480981 CCTTTTGATCTCAGTTGCATTGTTTT 59.519 34.615 0.00 0.00 0.00 2.43
2540 3342 7.011669 CCTTTTGATCTCAGTTGCATTGTTTTT 59.988 33.333 0.00 0.00 0.00 1.94
2591 3430 0.106469 AGCCGAGCTCCTATCAGTCA 60.106 55.000 8.47 0.00 30.62 3.41
2687 3548 4.383850 TGCATGCTACAAAACTGTGTTT 57.616 36.364 20.33 0.00 32.75 2.83
2688 3549 4.111198 TGCATGCTACAAAACTGTGTTTG 58.889 39.130 20.33 11.34 42.93 2.93
2704 3565 4.095610 GTGTTTGATTTATTTCTCGGCGG 58.904 43.478 7.21 0.00 0.00 6.13
2723 3586 2.223876 CGGCCGTGGCTATCTTAACTAA 60.224 50.000 19.50 0.00 41.60 2.24
2724 3587 3.738899 CGGCCGTGGCTATCTTAACTAAA 60.739 47.826 19.50 0.00 41.60 1.85
2729 3592 6.292919 GCCGTGGCTATCTTAACTAAATTCAG 60.293 42.308 2.98 0.00 38.26 3.02
2734 3597 8.989131 TGGCTATCTTAACTAAATTCAGTAGGT 58.011 33.333 0.00 0.00 0.00 3.08
2814 3680 9.415544 GAATCAGATTCAAATTGCAGTTTTAGT 57.584 29.630 17.07 0.00 39.09 2.24
2816 3682 7.939782 TCAGATTCAAATTGCAGTTTTAGTCA 58.060 30.769 4.19 0.00 0.00 3.41
2822 3688 9.598517 TTCAAATTGCAGTTTTAGTCATTTTCT 57.401 25.926 4.19 0.00 0.00 2.52
2823 3689 9.033481 TCAAATTGCAGTTTTAGTCATTTTCTG 57.967 29.630 4.19 0.00 0.00 3.02
2824 3690 7.951530 AATTGCAGTTTTAGTCATTTTCTGG 57.048 32.000 0.00 0.00 0.00 3.86
2825 3691 5.452078 TGCAGTTTTAGTCATTTTCTGGG 57.548 39.130 0.00 0.00 0.00 4.45
2826 3692 4.280677 TGCAGTTTTAGTCATTTTCTGGGG 59.719 41.667 0.00 0.00 0.00 4.96
2827 3693 4.280929 GCAGTTTTAGTCATTTTCTGGGGT 59.719 41.667 0.00 0.00 0.00 4.95
2828 3694 5.772521 CAGTTTTAGTCATTTTCTGGGGTG 58.227 41.667 0.00 0.00 0.00 4.61
2829 3695 4.832823 AGTTTTAGTCATTTTCTGGGGTGG 59.167 41.667 0.00 0.00 0.00 4.61
2830 3696 4.463050 TTTAGTCATTTTCTGGGGTGGT 57.537 40.909 0.00 0.00 0.00 4.16
2831 3697 5.586155 TTTAGTCATTTTCTGGGGTGGTA 57.414 39.130 0.00 0.00 0.00 3.25
2832 3698 5.789574 TTAGTCATTTTCTGGGGTGGTAT 57.210 39.130 0.00 0.00 0.00 2.73
2833 3699 4.675063 AGTCATTTTCTGGGGTGGTATT 57.325 40.909 0.00 0.00 0.00 1.89
2834 3700 5.010708 AGTCATTTTCTGGGGTGGTATTT 57.989 39.130 0.00 0.00 0.00 1.40
2835 3701 4.772100 AGTCATTTTCTGGGGTGGTATTTG 59.228 41.667 0.00 0.00 0.00 2.32
2836 3702 3.513515 TCATTTTCTGGGGTGGTATTTGC 59.486 43.478 0.00 0.00 0.00 3.68
2837 3703 2.685106 TTTCTGGGGTGGTATTTGCA 57.315 45.000 0.00 0.00 0.00 4.08
2838 3704 2.917713 TTCTGGGGTGGTATTTGCAT 57.082 45.000 0.00 0.00 0.00 3.96
2839 3705 2.435372 TCTGGGGTGGTATTTGCATC 57.565 50.000 0.00 0.00 0.00 3.91
2840 3706 1.024271 CTGGGGTGGTATTTGCATCG 58.976 55.000 0.00 0.00 0.00 3.84
2841 3707 0.621082 TGGGGTGGTATTTGCATCGA 59.379 50.000 0.00 0.00 0.00 3.59
2842 3708 1.214175 TGGGGTGGTATTTGCATCGAT 59.786 47.619 0.00 0.00 0.00 3.59
2843 3709 1.880027 GGGGTGGTATTTGCATCGATC 59.120 52.381 0.00 0.00 0.00 3.69
2844 3710 2.571212 GGGTGGTATTTGCATCGATCA 58.429 47.619 0.00 0.00 0.00 2.92
2845 3711 3.149196 GGGTGGTATTTGCATCGATCAT 58.851 45.455 0.00 0.00 0.00 2.45
2846 3712 4.323417 GGGTGGTATTTGCATCGATCATA 58.677 43.478 0.00 0.00 0.00 2.15
2847 3713 4.393062 GGGTGGTATTTGCATCGATCATAG 59.607 45.833 0.00 0.00 0.00 2.23
2848 3714 4.142816 GGTGGTATTTGCATCGATCATAGC 60.143 45.833 0.00 0.00 0.00 2.97
2849 3715 4.452114 GTGGTATTTGCATCGATCATAGCA 59.548 41.667 4.18 4.18 34.79 3.49
2850 3716 5.122869 GTGGTATTTGCATCGATCATAGCAT 59.877 40.000 8.74 0.00 36.80 3.79
2851 3717 6.313658 GTGGTATTTGCATCGATCATAGCATA 59.686 38.462 8.74 5.24 36.80 3.14
2852 3718 6.536224 TGGTATTTGCATCGATCATAGCATAG 59.464 38.462 8.74 0.00 36.80 2.23
2853 3719 6.536582 GGTATTTGCATCGATCATAGCATAGT 59.463 38.462 8.74 2.26 36.80 2.12
2854 3720 7.706607 GGTATTTGCATCGATCATAGCATAGTA 59.293 37.037 8.74 1.47 36.80 1.82
2855 3721 9.087424 GTATTTGCATCGATCATAGCATAGTAA 57.913 33.333 8.74 1.81 36.80 2.24
2856 3722 8.728337 ATTTGCATCGATCATAGCATAGTAAT 57.272 30.769 8.74 3.83 36.80 1.89
2857 3723 7.761651 TTGCATCGATCATAGCATAGTAATC 57.238 36.000 8.74 0.00 36.80 1.75
2858 3724 7.105241 TGCATCGATCATAGCATAGTAATCT 57.895 36.000 4.18 0.00 31.05 2.40
2859 3725 6.976925 TGCATCGATCATAGCATAGTAATCTG 59.023 38.462 4.18 0.00 31.05 2.90
2860 3726 6.420306 GCATCGATCATAGCATAGTAATCTGG 59.580 42.308 0.00 0.00 0.00 3.86
2861 3727 7.682981 GCATCGATCATAGCATAGTAATCTGGA 60.683 40.741 0.00 0.00 0.00 3.86
2862 3728 7.888250 TCGATCATAGCATAGTAATCTGGAT 57.112 36.000 0.00 0.00 0.00 3.41
2863 3729 8.298729 TCGATCATAGCATAGTAATCTGGATT 57.701 34.615 0.00 1.40 34.93 3.01
2864 3730 8.193438 TCGATCATAGCATAGTAATCTGGATTG 58.807 37.037 6.13 0.00 32.50 2.67
2865 3731 8.193438 CGATCATAGCATAGTAATCTGGATTGA 58.807 37.037 6.13 0.00 32.50 2.57
2866 3732 9.531942 GATCATAGCATAGTAATCTGGATTGAG 57.468 37.037 6.13 0.00 32.50 3.02
2867 3733 8.427902 TCATAGCATAGTAATCTGGATTGAGT 57.572 34.615 6.13 0.00 32.50 3.41
2868 3734 9.533831 TCATAGCATAGTAATCTGGATTGAGTA 57.466 33.333 6.13 0.20 32.50 2.59
2872 3738 8.654997 AGCATAGTAATCTGGATTGAGTAATGT 58.345 33.333 6.13 0.00 32.50 2.71
2873 3739 9.277783 GCATAGTAATCTGGATTGAGTAATGTT 57.722 33.333 6.13 0.00 32.50 2.71
2876 3742 8.723942 AGTAATCTGGATTGAGTAATGTTGAC 57.276 34.615 6.13 0.00 32.50 3.18
2877 3743 8.321353 AGTAATCTGGATTGAGTAATGTTGACA 58.679 33.333 6.13 0.00 32.50 3.58
2878 3744 9.113838 GTAATCTGGATTGAGTAATGTTGACAT 57.886 33.333 6.13 0.00 33.61 3.06
2879 3745 7.798596 ATCTGGATTGAGTAATGTTGACATC 57.201 36.000 0.00 0.00 35.10 3.06
2880 3746 6.115446 TCTGGATTGAGTAATGTTGACATCC 58.885 40.000 0.00 0.00 35.10 3.51
2881 3747 5.814481 TGGATTGAGTAATGTTGACATCCA 58.186 37.500 0.00 0.00 35.10 3.41
2882 3748 6.425735 TGGATTGAGTAATGTTGACATCCAT 58.574 36.000 0.00 0.00 35.10 3.41
2883 3749 6.543465 TGGATTGAGTAATGTTGACATCCATC 59.457 38.462 0.00 0.00 35.10 3.51
2884 3750 6.769822 GGATTGAGTAATGTTGACATCCATCT 59.230 38.462 0.00 0.00 35.10 2.90
2885 3751 7.284034 GGATTGAGTAATGTTGACATCCATCTT 59.716 37.037 0.00 0.00 35.10 2.40
2886 3752 9.330063 GATTGAGTAATGTTGACATCCATCTTA 57.670 33.333 0.00 0.00 35.10 2.10
2887 3753 9.857656 ATTGAGTAATGTTGACATCCATCTTAT 57.142 29.630 0.00 0.00 35.10 1.73
2888 3754 8.893219 TGAGTAATGTTGACATCCATCTTATC 57.107 34.615 0.00 0.00 35.10 1.75
2889 3755 7.933577 TGAGTAATGTTGACATCCATCTTATCC 59.066 37.037 0.00 0.00 35.10 2.59
2890 3756 7.805163 AGTAATGTTGACATCCATCTTATCCA 58.195 34.615 0.00 0.00 35.10 3.41
2891 3757 8.443176 AGTAATGTTGACATCCATCTTATCCAT 58.557 33.333 0.00 0.00 35.10 3.41
2892 3758 7.520451 AATGTTGACATCCATCTTATCCATG 57.480 36.000 0.00 0.00 35.10 3.66
2893 3759 5.379187 TGTTGACATCCATCTTATCCATGG 58.621 41.667 4.97 4.97 42.16 3.66
2898 3764 3.769739 TCCATCTTATCCATGGAACGG 57.230 47.619 20.67 12.63 45.73 4.44
2899 3765 3.313791 TCCATCTTATCCATGGAACGGA 58.686 45.455 20.67 16.33 45.73 4.69
2900 3766 3.909995 TCCATCTTATCCATGGAACGGAT 59.090 43.478 20.67 17.78 45.73 4.18
2901 3767 4.005650 CCATCTTATCCATGGAACGGATG 58.994 47.826 28.44 28.44 43.32 3.51
2902 3768 4.263025 CCATCTTATCCATGGAACGGATGA 60.263 45.833 32.57 21.28 43.32 2.92
2903 3769 5.494724 CATCTTATCCATGGAACGGATGAT 58.505 41.667 29.98 20.40 43.29 2.45
2904 3770 5.152623 TCTTATCCATGGAACGGATGATC 57.847 43.478 20.67 0.00 43.29 2.92
2905 3771 4.592778 TCTTATCCATGGAACGGATGATCA 59.407 41.667 20.67 0.00 43.29 2.92
2906 3772 3.862877 ATCCATGGAACGGATGATCAA 57.137 42.857 20.67 0.00 41.84 2.57
2907 3773 3.643199 TCCATGGAACGGATGATCAAA 57.357 42.857 13.46 0.00 0.00 2.69
2908 3774 4.169059 TCCATGGAACGGATGATCAAAT 57.831 40.909 13.46 0.00 0.00 2.32
2909 3775 4.136796 TCCATGGAACGGATGATCAAATC 58.863 43.478 13.46 0.00 0.00 2.17
2910 3776 3.884693 CCATGGAACGGATGATCAAATCA 59.115 43.478 5.56 0.00 44.55 2.57
2911 3777 4.338964 CCATGGAACGGATGATCAAATCAA 59.661 41.667 5.56 0.00 43.50 2.57
2912 3778 5.163530 CCATGGAACGGATGATCAAATCAAA 60.164 40.000 5.56 0.00 43.50 2.69
2913 3779 6.461927 CCATGGAACGGATGATCAAATCAAAT 60.462 38.462 5.56 0.00 43.50 2.32
2914 3780 6.528537 TGGAACGGATGATCAAATCAAATT 57.471 33.333 0.00 0.00 43.50 1.82
2915 3781 6.331845 TGGAACGGATGATCAAATCAAATTG 58.668 36.000 0.00 0.00 43.50 2.32
2916 3782 5.232838 GGAACGGATGATCAAATCAAATTGC 59.767 40.000 0.00 0.00 43.50 3.56
2917 3783 5.327616 ACGGATGATCAAATCAAATTGCA 57.672 34.783 0.00 0.00 43.50 4.08
2918 3784 5.345702 ACGGATGATCAAATCAAATTGCAG 58.654 37.500 0.00 0.00 43.50 4.41
2919 3785 5.105635 ACGGATGATCAAATCAAATTGCAGT 60.106 36.000 0.00 0.00 43.50 4.40
2920 3786 5.808540 CGGATGATCAAATCAAATTGCAGTT 59.191 36.000 0.00 0.00 43.50 3.16
2921 3787 6.311935 CGGATGATCAAATCAAATTGCAGTTT 59.688 34.615 0.00 0.65 43.50 2.66
2922 3788 7.463648 CGGATGATCAAATCAAATTGCAGTTTC 60.464 37.037 3.92 0.00 43.50 2.78
2923 3789 7.332430 GGATGATCAAATCAAATTGCAGTTTCA 59.668 33.333 3.92 0.00 43.50 2.69
2924 3790 7.646446 TGATCAAATCAAATTGCAGTTTCAG 57.354 32.000 3.92 0.00 36.11 3.02
2925 3791 7.211573 TGATCAAATCAAATTGCAGTTTCAGT 58.788 30.769 3.92 0.00 36.11 3.41
2926 3792 6.831727 TCAAATCAAATTGCAGTTTCAGTG 57.168 33.333 3.92 1.77 0.00 3.66
2927 3793 5.234757 TCAAATCAAATTGCAGTTTCAGTGC 59.765 36.000 3.92 0.00 44.57 4.40
2933 3799 3.373020 GCAGTTTCAGTGCATGTCG 57.627 52.632 0.00 0.00 43.79 4.35
2934 3800 0.867746 GCAGTTTCAGTGCATGTCGA 59.132 50.000 0.00 0.00 43.79 4.20
2935 3801 1.264020 GCAGTTTCAGTGCATGTCGAA 59.736 47.619 0.00 0.00 43.79 3.71
2936 3802 2.286950 GCAGTTTCAGTGCATGTCGAAA 60.287 45.455 0.00 0.00 43.79 3.46
2937 3803 3.610114 GCAGTTTCAGTGCATGTCGAAAT 60.610 43.478 0.00 0.00 43.79 2.17
2938 3804 4.539870 CAGTTTCAGTGCATGTCGAAATT 58.460 39.130 0.00 0.00 30.68 1.82
2939 3805 4.380678 CAGTTTCAGTGCATGTCGAAATTG 59.619 41.667 0.00 0.75 31.61 2.32
2940 3806 3.557577 TTCAGTGCATGTCGAAATTGG 57.442 42.857 0.00 0.00 0.00 3.16
2941 3807 1.811965 TCAGTGCATGTCGAAATTGGG 59.188 47.619 0.00 0.00 0.00 4.12
2942 3808 1.811965 CAGTGCATGTCGAAATTGGGA 59.188 47.619 0.00 0.00 0.00 4.37
2943 3809 2.424601 CAGTGCATGTCGAAATTGGGAT 59.575 45.455 0.00 0.00 0.00 3.85
2944 3810 3.091545 AGTGCATGTCGAAATTGGGATT 58.908 40.909 0.00 0.00 0.00 3.01
2945 3811 3.511146 AGTGCATGTCGAAATTGGGATTT 59.489 39.130 0.00 0.00 38.16 2.17
2946 3812 4.021192 AGTGCATGTCGAAATTGGGATTTT 60.021 37.500 0.00 0.00 35.65 1.82
2947 3813 4.091800 GTGCATGTCGAAATTGGGATTTTG 59.908 41.667 0.00 0.00 35.65 2.44
2948 3814 3.618150 GCATGTCGAAATTGGGATTTTGG 59.382 43.478 0.00 0.00 37.28 3.28
2949 3815 4.620332 GCATGTCGAAATTGGGATTTTGGA 60.620 41.667 0.00 0.00 37.28 3.53
2950 3816 4.513198 TGTCGAAATTGGGATTTTGGAC 57.487 40.909 0.00 4.88 38.32 4.02
2951 3817 3.891977 TGTCGAAATTGGGATTTTGGACA 59.108 39.130 9.08 9.08 41.47 4.02
2952 3818 4.234574 GTCGAAATTGGGATTTTGGACAC 58.765 43.478 6.47 0.00 38.06 3.67
2953 3819 3.057876 TCGAAATTGGGATTTTGGACACG 60.058 43.478 0.00 0.00 37.28 4.49
2954 3820 2.741759 AATTGGGATTTTGGACACGC 57.258 45.000 0.00 0.00 0.00 5.34
2955 3821 1.923356 ATTGGGATTTTGGACACGCT 58.077 45.000 0.00 0.00 0.00 5.07
2956 3822 2.570415 TTGGGATTTTGGACACGCTA 57.430 45.000 0.00 0.00 0.00 4.26
2957 3823 1.816074 TGGGATTTTGGACACGCTAC 58.184 50.000 0.00 0.00 0.00 3.58
2958 3824 1.092348 GGGATTTTGGACACGCTACC 58.908 55.000 0.00 0.00 0.00 3.18
2959 3825 0.725117 GGATTTTGGACACGCTACCG 59.275 55.000 0.00 0.00 41.14 4.02
2960 3826 0.725117 GATTTTGGACACGCTACCGG 59.275 55.000 0.00 0.00 39.22 5.28
2961 3827 0.035739 ATTTTGGACACGCTACCGGT 59.964 50.000 13.98 13.98 39.22 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.003804 GGTCAAAGAGCTTTAACCATCTCA 58.996 41.667 9.86 0.00 39.98 3.27
1 2 4.093556 CGGTCAAAGAGCTTTAACCATCTC 59.906 45.833 14.07 0.00 40.18 2.75
2 3 4.003648 CGGTCAAAGAGCTTTAACCATCT 58.996 43.478 14.07 0.00 40.18 2.90
3 4 4.000988 TCGGTCAAAGAGCTTTAACCATC 58.999 43.478 14.07 0.00 40.18 3.51
4 5 4.015872 TCGGTCAAAGAGCTTTAACCAT 57.984 40.909 14.07 0.00 40.18 3.55
5 6 3.478857 TCGGTCAAAGAGCTTTAACCA 57.521 42.857 14.07 1.20 40.18 3.67
7 8 3.363673 CCGTTCGGTCAAAGAGCTTTAAC 60.364 47.826 2.82 0.00 0.00 2.01
8 9 2.803956 CCGTTCGGTCAAAGAGCTTTAA 59.196 45.455 2.82 0.00 0.00 1.52
9 10 2.224113 ACCGTTCGGTCAAAGAGCTTTA 60.224 45.455 11.27 0.00 32.13 1.85
10 11 1.226746 CCGTTCGGTCAAAGAGCTTT 58.773 50.000 2.82 0.00 0.00 3.51
12 13 0.963962 TACCGTTCGGTCAAAGAGCT 59.036 50.000 20.17 0.00 39.52 4.09
13 14 1.725164 CTTACCGTTCGGTCAAAGAGC 59.275 52.381 20.17 0.00 39.52 4.09
15 16 1.688197 ACCTTACCGTTCGGTCAAAGA 59.312 47.619 20.17 0.00 39.52 2.52
16 17 2.159327 ACCTTACCGTTCGGTCAAAG 57.841 50.000 20.17 17.50 39.52 2.77
17 18 3.959535 ATACCTTACCGTTCGGTCAAA 57.040 42.857 20.17 9.46 39.52 2.69
18 19 4.269183 TCTATACCTTACCGTTCGGTCAA 58.731 43.478 20.17 11.72 39.52 3.18
19 20 3.884895 TCTATACCTTACCGTTCGGTCA 58.115 45.455 20.17 9.05 39.52 4.02
20 21 4.900635 TTCTATACCTTACCGTTCGGTC 57.099 45.455 20.17 0.00 39.52 4.79
21 22 4.038402 CCATTCTATACCTTACCGTTCGGT 59.962 45.833 20.39 20.39 41.93 4.69
23 24 3.985925 GCCATTCTATACCTTACCGTTCG 59.014 47.826 0.00 0.00 0.00 3.95
24 25 4.952460 TGCCATTCTATACCTTACCGTTC 58.048 43.478 0.00 0.00 0.00 3.95
25 26 5.562298 ATGCCATTCTATACCTTACCGTT 57.438 39.130 0.00 0.00 0.00 4.44
26 27 5.562298 AATGCCATTCTATACCTTACCGT 57.438 39.130 0.00 0.00 0.00 4.83
27 28 6.231211 AGAAATGCCATTCTATACCTTACCG 58.769 40.000 0.00 0.00 37.88 4.02
31 32 9.965902 CCTTATAGAAATGCCATTCTATACCTT 57.034 33.333 19.87 6.10 46.70 3.50
32 33 8.552296 CCCTTATAGAAATGCCATTCTATACCT 58.448 37.037 19.87 6.37 46.70 3.08
33 34 7.283354 GCCCTTATAGAAATGCCATTCTATACC 59.717 40.741 19.87 10.51 46.70 2.73
34 35 7.829211 TGCCCTTATAGAAATGCCATTCTATAC 59.171 37.037 19.87 12.98 46.70 1.47
35 36 7.927788 TGCCCTTATAGAAATGCCATTCTATA 58.072 34.615 17.72 17.72 46.00 1.31
37 38 6.199557 TGCCCTTATAGAAATGCCATTCTA 57.800 37.500 9.85 9.85 43.87 2.10
38 39 5.065613 TGCCCTTATAGAAATGCCATTCT 57.934 39.130 6.38 6.38 42.21 2.40
39 40 5.302823 AGTTGCCCTTATAGAAATGCCATTC 59.697 40.000 0.00 0.00 0.00 2.67
40 41 5.211201 AGTTGCCCTTATAGAAATGCCATT 58.789 37.500 0.00 0.00 0.00 3.16
41 42 4.808042 AGTTGCCCTTATAGAAATGCCAT 58.192 39.130 0.00 0.00 0.00 4.40
42 43 4.249638 AGTTGCCCTTATAGAAATGCCA 57.750 40.909 0.00 0.00 0.00 4.92
43 44 5.592688 TGTTAGTTGCCCTTATAGAAATGCC 59.407 40.000 0.00 0.00 0.00 4.40
44 45 6.693315 TGTTAGTTGCCCTTATAGAAATGC 57.307 37.500 0.00 0.00 0.00 3.56
45 46 6.318648 TGCTGTTAGTTGCCCTTATAGAAATG 59.681 38.462 0.00 0.00 0.00 2.32
46 47 6.423182 TGCTGTTAGTTGCCCTTATAGAAAT 58.577 36.000 0.00 0.00 0.00 2.17
47 48 5.811190 TGCTGTTAGTTGCCCTTATAGAAA 58.189 37.500 0.00 0.00 0.00 2.52
48 49 5.188948 TCTGCTGTTAGTTGCCCTTATAGAA 59.811 40.000 0.00 0.00 0.00 2.10
49 50 4.714802 TCTGCTGTTAGTTGCCCTTATAGA 59.285 41.667 0.00 0.00 0.00 1.98
50 51 5.023533 TCTGCTGTTAGTTGCCCTTATAG 57.976 43.478 0.00 0.00 0.00 1.31
51 52 4.141711 CCTCTGCTGTTAGTTGCCCTTATA 60.142 45.833 0.00 0.00 0.00 0.98
52 53 3.370953 CCTCTGCTGTTAGTTGCCCTTAT 60.371 47.826 0.00 0.00 0.00 1.73
53 54 2.027192 CCTCTGCTGTTAGTTGCCCTTA 60.027 50.000 0.00 0.00 0.00 2.69
54 55 1.271597 CCTCTGCTGTTAGTTGCCCTT 60.272 52.381 0.00 0.00 0.00 3.95
55 56 0.326264 CCTCTGCTGTTAGTTGCCCT 59.674 55.000 0.00 0.00 0.00 5.19
56 57 0.678048 CCCTCTGCTGTTAGTTGCCC 60.678 60.000 0.00 0.00 0.00 5.36
57 58 0.678048 CCCCTCTGCTGTTAGTTGCC 60.678 60.000 0.00 0.00 0.00 4.52
58 59 1.308783 GCCCCTCTGCTGTTAGTTGC 61.309 60.000 0.00 0.00 0.00 4.17
59 60 0.036732 TGCCCCTCTGCTGTTAGTTG 59.963 55.000 0.00 0.00 0.00 3.16
60 61 0.771127 TTGCCCCTCTGCTGTTAGTT 59.229 50.000 0.00 0.00 0.00 2.24
61 62 0.771127 TTTGCCCCTCTGCTGTTAGT 59.229 50.000 0.00 0.00 0.00 2.24
62 63 2.134789 ATTTGCCCCTCTGCTGTTAG 57.865 50.000 0.00 0.00 0.00 2.34
63 64 2.562298 CAAATTTGCCCCTCTGCTGTTA 59.438 45.455 5.01 0.00 0.00 2.41
64 65 1.345415 CAAATTTGCCCCTCTGCTGTT 59.655 47.619 5.01 0.00 0.00 3.16
65 66 0.971386 CAAATTTGCCCCTCTGCTGT 59.029 50.000 5.01 0.00 0.00 4.40
66 67 1.203994 CTCAAATTTGCCCCTCTGCTG 59.796 52.381 13.54 0.00 0.00 4.41
67 68 1.203100 ACTCAAATTTGCCCCTCTGCT 60.203 47.619 13.54 0.00 0.00 4.24
68 69 1.260544 ACTCAAATTTGCCCCTCTGC 58.739 50.000 13.54 0.00 0.00 4.26
69 70 3.181483 GCATACTCAAATTTGCCCCTCTG 60.181 47.826 13.54 7.02 0.00 3.35
70 71 3.026694 GCATACTCAAATTTGCCCCTCT 58.973 45.455 13.54 0.00 0.00 3.69
71 72 3.026694 AGCATACTCAAATTTGCCCCTC 58.973 45.455 13.54 1.42 35.71 4.30
72 73 3.105959 AGCATACTCAAATTTGCCCCT 57.894 42.857 13.54 1.36 35.71 4.79
73 74 3.893326 AAGCATACTCAAATTTGCCCC 57.107 42.857 13.54 0.00 35.71 5.80
74 75 4.819769 TCAAAGCATACTCAAATTTGCCC 58.180 39.130 13.54 0.00 35.71 5.36
75 76 6.783892 TTTCAAAGCATACTCAAATTTGCC 57.216 33.333 13.54 0.00 35.71 4.52
76 77 9.962759 CTAATTTCAAAGCATACTCAAATTTGC 57.037 29.630 13.54 1.11 32.28 3.68
78 79 9.657419 CCCTAATTTCAAAGCATACTCAAATTT 57.343 29.630 0.00 0.00 0.00 1.82
79 80 8.260114 CCCCTAATTTCAAAGCATACTCAAATT 58.740 33.333 0.00 0.00 0.00 1.82
80 81 7.633553 GCCCCTAATTTCAAAGCATACTCAAAT 60.634 37.037 0.00 0.00 0.00 2.32
81 82 6.350949 GCCCCTAATTTCAAAGCATACTCAAA 60.351 38.462 0.00 0.00 0.00 2.69
82 83 5.127031 GCCCCTAATTTCAAAGCATACTCAA 59.873 40.000 0.00 0.00 0.00 3.02
83 84 4.644685 GCCCCTAATTTCAAAGCATACTCA 59.355 41.667 0.00 0.00 0.00 3.41
84 85 4.644685 TGCCCCTAATTTCAAAGCATACTC 59.355 41.667 0.00 0.00 0.00 2.59
85 86 4.609301 TGCCCCTAATTTCAAAGCATACT 58.391 39.130 0.00 0.00 0.00 2.12
86 87 5.337578 TTGCCCCTAATTTCAAAGCATAC 57.662 39.130 0.00 0.00 0.00 2.39
87 88 6.383726 AGATTTGCCCCTAATTTCAAAGCATA 59.616 34.615 0.00 0.00 37.31 3.14
88 89 4.906747 TTTGCCCCTAATTTCAAAGCAT 57.093 36.364 0.00 0.00 0.00 3.79
89 90 4.531732 AGATTTGCCCCTAATTTCAAAGCA 59.468 37.500 0.00 0.00 37.31 3.91
90 91 4.872124 CAGATTTGCCCCTAATTTCAAAGC 59.128 41.667 0.00 0.00 35.72 3.51
91 92 6.284891 TCAGATTTGCCCCTAATTTCAAAG 57.715 37.500 0.00 0.00 32.78 2.77
92 93 5.187576 CCTCAGATTTGCCCCTAATTTCAAA 59.812 40.000 0.00 0.00 33.64 2.69
93 94 4.711355 CCTCAGATTTGCCCCTAATTTCAA 59.289 41.667 0.00 0.00 0.00 2.69
94 95 4.264352 ACCTCAGATTTGCCCCTAATTTCA 60.264 41.667 0.00 0.00 0.00 2.69
95 96 4.281657 ACCTCAGATTTGCCCCTAATTTC 58.718 43.478 0.00 0.00 0.00 2.17
96 97 4.337264 ACCTCAGATTTGCCCCTAATTT 57.663 40.909 0.00 0.00 0.00 1.82
97 98 4.689983 GCTACCTCAGATTTGCCCCTAATT 60.690 45.833 0.00 0.00 0.00 1.40
98 99 3.181439 GCTACCTCAGATTTGCCCCTAAT 60.181 47.826 0.00 0.00 0.00 1.73
99 100 2.172717 GCTACCTCAGATTTGCCCCTAA 59.827 50.000 0.00 0.00 0.00 2.69
100 101 1.768870 GCTACCTCAGATTTGCCCCTA 59.231 52.381 0.00 0.00 0.00 3.53
101 102 0.548510 GCTACCTCAGATTTGCCCCT 59.451 55.000 0.00 0.00 0.00 4.79
102 103 0.815615 CGCTACCTCAGATTTGCCCC 60.816 60.000 0.00 0.00 0.00 5.80
103 104 1.440145 GCGCTACCTCAGATTTGCCC 61.440 60.000 0.00 0.00 0.00 5.36
104 105 1.440145 GGCGCTACCTCAGATTTGCC 61.440 60.000 7.64 0.00 34.51 4.52
105 106 2.017752 GGCGCTACCTCAGATTTGC 58.982 57.895 7.64 0.00 34.51 3.68
115 116 0.386113 CTCCTGAAGTAGGCGCTACC 59.614 60.000 7.64 0.00 46.87 3.18
116 117 1.335496 CTCTCCTGAAGTAGGCGCTAC 59.665 57.143 7.64 8.14 46.87 3.58
117 118 1.212195 TCTCTCCTGAAGTAGGCGCTA 59.788 52.381 7.64 0.00 46.87 4.26
118 119 0.033991 TCTCTCCTGAAGTAGGCGCT 60.034 55.000 7.64 0.00 46.87 5.92
137 138 1.686325 ATCCGGCGCTACCTGTCATT 61.686 55.000 7.64 0.00 35.61 2.57
153 154 4.603946 GCGACCCCACGGCTATCC 62.604 72.222 0.00 0.00 0.00 2.59
190 192 3.187227 ACATACTTCACGCAAAAGCTGAG 59.813 43.478 0.00 0.00 0.00 3.35
203 208 4.421058 GTGAGCACACGATACATACTTCA 58.579 43.478 0.00 0.00 37.28 3.02
213 218 1.361668 GCGATTGGTGAGCACACGAT 61.362 55.000 8.22 4.98 46.77 3.73
217 222 1.079197 ATCGCGATTGGTGAGCACA 60.079 52.632 17.62 0.00 38.83 4.57
224 229 0.389391 CTACCCAGATCGCGATTGGT 59.611 55.000 30.67 30.08 0.00 3.67
249 254 0.620700 ATTTGCTCCGGGTCTAGGGT 60.621 55.000 0.00 0.00 0.00 4.34
265 271 2.504519 GAGGTAGCCGCGGGATTT 59.495 61.111 29.38 0.00 0.00 2.17
274 280 2.798364 GGAAGCGAGGGAGGTAGCC 61.798 68.421 0.00 0.00 0.00 3.93
276 282 0.747852 GAAGGAAGCGAGGGAGGTAG 59.252 60.000 0.00 0.00 0.00 3.18
277 283 1.035932 CGAAGGAAGCGAGGGAGGTA 61.036 60.000 0.00 0.00 0.00 3.08
278 284 2.352032 CGAAGGAAGCGAGGGAGGT 61.352 63.158 0.00 0.00 0.00 3.85
281 287 1.899437 ATTGCGAAGGAAGCGAGGGA 61.899 55.000 0.00 0.00 44.16 4.20
296 302 3.697439 TAGGTGGCTGCGGGATTGC 62.697 63.158 0.00 0.00 0.00 3.56
302 308 4.473520 CAGGGTAGGTGGCTGCGG 62.474 72.222 0.00 0.00 0.00 5.69
353 359 0.112995 ATGCCCCTCAAGCACTTTGA 59.887 50.000 0.00 0.00 44.40 2.69
360 366 2.825836 CGACCATGCCCCTCAAGC 60.826 66.667 0.00 0.00 0.00 4.01
444 453 0.824109 AGCAACGCCAGCTACTATGA 59.176 50.000 0.00 0.00 41.32 2.15
480 489 2.228582 TGTGAAACGCCATGAGATTTGG 59.771 45.455 0.00 0.00 42.39 3.28
488 497 1.460359 GCCAAAATGTGAAACGCCATG 59.540 47.619 0.00 0.00 42.39 3.66
493 502 2.283884 GGTGTTGCCAAAATGTGAAACG 59.716 45.455 0.00 0.00 37.01 3.60
525 534 2.693074 AGACGGTCCAAATTGCAAACTT 59.307 40.909 1.71 0.00 0.00 2.66
591 600 2.415697 AAAACATCCGCGAAAACAGG 57.584 45.000 8.23 0.00 0.00 4.00
594 603 4.284485 ACAGTTAAAACATCCGCGAAAAC 58.716 39.130 8.23 0.00 0.00 2.43
606 618 3.860536 TCTTGGCGCAAAACAGTTAAAAC 59.139 39.130 10.83 0.00 0.00 2.43
611 623 1.680735 TCATCTTGGCGCAAAACAGTT 59.319 42.857 10.83 0.00 0.00 3.16
612 624 1.317613 TCATCTTGGCGCAAAACAGT 58.682 45.000 10.83 0.00 0.00 3.55
613 625 2.420628 TTCATCTTGGCGCAAAACAG 57.579 45.000 10.83 0.00 0.00 3.16
614 626 2.035704 ACATTCATCTTGGCGCAAAACA 59.964 40.909 10.83 0.00 0.00 2.83
615 627 2.676076 ACATTCATCTTGGCGCAAAAC 58.324 42.857 10.83 0.00 0.00 2.43
667 679 6.250315 GCATGTTTTTGTAACAAAACTTTGCC 59.750 34.615 19.01 9.63 41.79 4.52
668 686 6.250315 GGCATGTTTTTGTAACAAAACTTTGC 59.750 34.615 20.24 20.24 41.84 3.68
670 688 7.301789 GTGGCATGTTTTTGTAACAAAACTTT 58.698 30.769 12.21 0.00 39.08 2.66
673 691 5.352846 AGGTGGCATGTTTTTGTAACAAAAC 59.647 36.000 8.94 8.94 38.86 2.43
710 729 5.627499 TGCTTCTCCATACAATGAACAAC 57.373 39.130 0.00 0.00 0.00 3.32
744 763 4.447138 ACCAATCTAGGTGTGGTTTTCA 57.553 40.909 6.99 0.00 43.19 2.69
756 775 1.889829 CTCCCTCCGCTACCAATCTAG 59.110 57.143 0.00 0.00 0.00 2.43
758 777 1.403687 GCTCCCTCCGCTACCAATCT 61.404 60.000 0.00 0.00 0.00 2.40
759 778 1.069935 GCTCCCTCCGCTACCAATC 59.930 63.158 0.00 0.00 0.00 2.67
760 779 1.689233 TGCTCCCTCCGCTACCAAT 60.689 57.895 0.00 0.00 0.00 3.16
762 781 3.075005 GTGCTCCCTCCGCTACCA 61.075 66.667 0.00 0.00 0.00 3.25
764 783 4.874977 GCGTGCTCCCTCCGCTAC 62.875 72.222 0.00 0.00 43.81 3.58
772 791 4.660938 AAAGGGTGGCGTGCTCCC 62.661 66.667 14.47 14.47 41.36 4.30
773 792 3.365265 CAAAGGGTGGCGTGCTCC 61.365 66.667 0.00 0.00 0.00 4.70
774 793 2.594592 ACAAAGGGTGGCGTGCTC 60.595 61.111 0.00 0.00 0.00 4.26
775 794 2.594592 GACAAAGGGTGGCGTGCT 60.595 61.111 0.00 0.00 0.00 4.40
776 795 3.670377 GGACAAAGGGTGGCGTGC 61.670 66.667 0.00 0.00 35.23 5.34
777 796 1.528309 AAGGACAAAGGGTGGCGTG 60.528 57.895 0.00 0.00 35.23 5.34
778 797 1.528309 CAAGGACAAAGGGTGGCGT 60.528 57.895 0.00 0.00 35.23 5.68
779 798 1.528309 ACAAGGACAAAGGGTGGCG 60.528 57.895 0.00 0.00 35.23 5.69
780 799 1.463553 CCACAAGGACAAAGGGTGGC 61.464 60.000 0.00 0.00 42.11 5.01
781 800 2.732289 CCACAAGGACAAAGGGTGG 58.268 57.895 0.00 0.00 42.57 4.61
809 828 2.111878 CGGGGTCATGCTCATCCC 59.888 66.667 0.00 0.00 39.22 3.85
897 940 2.415090 GGAGCTTTACACGACGAGCTAA 60.415 50.000 7.86 0.00 44.88 3.09
937 1000 1.271434 GGTGGGTCTTCTGGAAAGGAC 60.271 57.143 0.00 0.00 0.00 3.85
1032 1108 2.268920 GCCTGCATGAGGACGGAA 59.731 61.111 13.48 0.00 46.33 4.30
1277 1371 3.647771 GGTTGGGCGGGGAGAAGT 61.648 66.667 0.00 0.00 0.00 3.01
1524 1642 2.257676 GTGTCGTCGTCCCTGTCC 59.742 66.667 0.00 0.00 0.00 4.02
1638 1788 3.385384 CCTCTGGCTGCCTGACGA 61.385 66.667 22.44 11.27 0.00 4.20
1716 1883 3.088500 GATGTGCTTCACGGCGAGC 62.089 63.158 16.62 13.63 37.14 5.03
1810 1991 0.182061 ACCTCGGAGATGTAGGCGTA 59.818 55.000 6.58 0.00 32.56 4.42
1863 2054 4.078336 TCATCTAGGACAAGGAGGAAGGAT 60.078 45.833 0.00 0.00 0.00 3.24
1973 2362 2.067766 GAGAGCATGGCTTGATCGATC 58.932 52.381 18.72 18.72 45.55 3.69
2018 2467 2.512692 AACCACAAGCCTGCATGATA 57.487 45.000 0.00 0.00 0.00 2.15
2098 2585 0.602905 AAATAGATAGCCACGGCCGC 60.603 55.000 28.58 9.48 43.17 6.53
2116 2608 4.591321 ACCCCTAATTGATGAAGCTGAA 57.409 40.909 0.00 0.00 0.00 3.02
2169 2690 5.531122 TTCGTCCCACAGATAAGATAAGG 57.469 43.478 0.00 0.00 0.00 2.69
2262 2913 5.558818 AGGAACATAAAAATGGCATTGCAA 58.441 33.333 14.47 0.00 0.00 4.08
2265 2916 8.981647 GCTAATAGGAACATAAAAATGGCATTG 58.018 33.333 14.47 3.87 0.00 2.82
2316 2970 8.781067 TCGTAAAAGAAAACATGATTGACAAG 57.219 30.769 0.00 0.00 0.00 3.16
2341 2995 4.833390 ACTAAAGCCTTCTTCTTACGCAT 58.167 39.130 0.00 0.00 0.00 4.73
2342 2996 4.267349 ACTAAAGCCTTCTTCTTACGCA 57.733 40.909 0.00 0.00 0.00 5.24
2354 3014 3.767673 TGGACGACTATCAACTAAAGCCT 59.232 43.478 0.00 0.00 0.00 4.58
2355 3015 4.119442 TGGACGACTATCAACTAAAGCC 57.881 45.455 0.00 0.00 0.00 4.35
2359 3021 5.353123 GGCATTTTGGACGACTATCAACTAA 59.647 40.000 0.00 0.00 0.00 2.24
2362 3024 3.689649 AGGCATTTTGGACGACTATCAAC 59.310 43.478 0.00 0.00 0.00 3.18
2366 3028 3.914426 AGAGGCATTTTGGACGACTAT 57.086 42.857 0.00 0.00 0.00 2.12
2369 3031 3.643159 AAAAGAGGCATTTTGGACGAC 57.357 42.857 0.00 0.00 31.30 4.34
2483 3253 6.403878 ACCATGTACGTTGCTTCTATACTTT 58.596 36.000 0.00 0.00 0.00 2.66
2494 3266 1.463444 GTTCCAGACCATGTACGTTGC 59.537 52.381 0.00 0.00 0.00 4.17
2506 3278 4.646572 ACTGAGATCAAAAGGTTCCAGAC 58.353 43.478 0.00 0.00 0.00 3.51
2539 3341 9.709495 AGCAATGCAACTGAAATTAATCTAAAA 57.291 25.926 8.35 0.00 0.00 1.52
2540 3342 9.142515 CAGCAATGCAACTGAAATTAATCTAAA 57.857 29.630 8.35 0.00 0.00 1.85
2541 3343 8.522003 TCAGCAATGCAACTGAAATTAATCTAA 58.478 29.630 8.35 0.00 0.00 2.10
2542 3344 8.054152 TCAGCAATGCAACTGAAATTAATCTA 57.946 30.769 8.35 0.00 0.00 1.98
2543 3345 6.927416 TCAGCAATGCAACTGAAATTAATCT 58.073 32.000 8.35 0.00 0.00 2.40
2544 3346 7.490079 TGATCAGCAATGCAACTGAAATTAATC 59.510 33.333 17.93 11.81 0.00 1.75
2545 3347 7.324935 TGATCAGCAATGCAACTGAAATTAAT 58.675 30.769 17.93 4.39 0.00 1.40
2546 3348 6.689554 TGATCAGCAATGCAACTGAAATTAA 58.310 32.000 17.93 3.94 0.00 1.40
2547 3349 6.270156 TGATCAGCAATGCAACTGAAATTA 57.730 33.333 17.93 5.85 0.00 1.40
2548 3350 5.142061 TGATCAGCAATGCAACTGAAATT 57.858 34.783 17.93 5.58 0.00 1.82
2549 3351 4.794278 TGATCAGCAATGCAACTGAAAT 57.206 36.364 17.93 6.17 0.00 2.17
2550 3352 4.794278 ATGATCAGCAATGCAACTGAAA 57.206 36.364 17.93 11.63 0.00 2.69
2687 3548 1.305201 GGCCGCCGAGAAATAAATCA 58.695 50.000 0.00 0.00 0.00 2.57
2704 3565 5.526111 TGAATTTAGTTAAGATAGCCACGGC 59.474 40.000 0.00 0.00 42.33 5.68
2723 3586 6.592607 CGTACCACATTTACACCTACTGAATT 59.407 38.462 0.00 0.00 0.00 2.17
2724 3587 6.103997 CGTACCACATTTACACCTACTGAAT 58.896 40.000 0.00 0.00 0.00 2.57
2729 3592 3.587923 TGCGTACCACATTTACACCTAC 58.412 45.455 0.00 0.00 0.00 3.18
2734 3597 3.114668 ACACTGCGTACCACATTTACA 57.885 42.857 0.00 0.00 0.00 2.41
2756 3619 7.225341 TCTCACATATAACATGCAGATCAACAC 59.775 37.037 0.00 0.00 0.00 3.32
2814 3680 3.513515 GCAAATACCACCCCAGAAAATGA 59.486 43.478 0.00 0.00 0.00 2.57
2816 3682 3.515562 TGCAAATACCACCCCAGAAAAT 58.484 40.909 0.00 0.00 0.00 1.82
2820 3686 1.408127 CGATGCAAATACCACCCCAGA 60.408 52.381 0.00 0.00 0.00 3.86
2821 3687 1.024271 CGATGCAAATACCACCCCAG 58.976 55.000 0.00 0.00 0.00 4.45
2822 3688 0.621082 TCGATGCAAATACCACCCCA 59.379 50.000 0.00 0.00 0.00 4.96
2823 3689 1.880027 GATCGATGCAAATACCACCCC 59.120 52.381 0.54 0.00 0.00 4.95
2824 3690 2.571212 TGATCGATGCAAATACCACCC 58.429 47.619 0.54 0.00 0.00 4.61
2825 3691 4.142816 GCTATGATCGATGCAAATACCACC 60.143 45.833 0.54 0.00 0.00 4.61
2826 3692 4.452114 TGCTATGATCGATGCAAATACCAC 59.548 41.667 0.54 0.00 32.12 4.16
2827 3693 4.640364 TGCTATGATCGATGCAAATACCA 58.360 39.130 0.54 0.00 32.12 3.25
2828 3694 5.808042 ATGCTATGATCGATGCAAATACC 57.192 39.130 11.59 0.00 38.96 2.73
2829 3695 7.531280 ACTATGCTATGATCGATGCAAATAC 57.469 36.000 11.59 0.00 38.96 1.89
2830 3696 9.822185 ATTACTATGCTATGATCGATGCAAATA 57.178 29.630 11.59 1.54 38.96 1.40
2831 3697 8.728337 ATTACTATGCTATGATCGATGCAAAT 57.272 30.769 11.59 5.14 38.96 2.32
2832 3698 8.037166 AGATTACTATGCTATGATCGATGCAAA 58.963 33.333 11.59 3.20 38.96 3.68
2833 3699 7.490402 CAGATTACTATGCTATGATCGATGCAA 59.510 37.037 11.59 0.00 38.96 4.08
2834 3700 6.976925 CAGATTACTATGCTATGATCGATGCA 59.023 38.462 0.54 6.62 39.83 3.96
2835 3701 6.420306 CCAGATTACTATGCTATGATCGATGC 59.580 42.308 0.54 0.00 0.00 3.91
2836 3702 7.710896 TCCAGATTACTATGCTATGATCGATG 58.289 38.462 0.54 0.00 0.00 3.84
2837 3703 7.888250 TCCAGATTACTATGCTATGATCGAT 57.112 36.000 0.00 0.00 0.00 3.59
2838 3704 7.888250 ATCCAGATTACTATGCTATGATCGA 57.112 36.000 0.00 0.00 0.00 3.59
2839 3705 8.193438 TCAATCCAGATTACTATGCTATGATCG 58.807 37.037 0.00 0.00 0.00 3.69
2840 3706 9.531942 CTCAATCCAGATTACTATGCTATGATC 57.468 37.037 0.00 0.00 0.00 2.92
2841 3707 9.044646 ACTCAATCCAGATTACTATGCTATGAT 57.955 33.333 0.00 0.00 0.00 2.45
2842 3708 8.427902 ACTCAATCCAGATTACTATGCTATGA 57.572 34.615 0.00 0.00 0.00 2.15
2846 3712 8.654997 ACATTACTCAATCCAGATTACTATGCT 58.345 33.333 0.00 0.00 0.00 3.79
2847 3713 8.839310 ACATTACTCAATCCAGATTACTATGC 57.161 34.615 0.00 0.00 0.00 3.14
2850 3716 9.817809 GTCAACATTACTCAATCCAGATTACTA 57.182 33.333 0.00 0.00 0.00 1.82
2851 3717 8.321353 TGTCAACATTACTCAATCCAGATTACT 58.679 33.333 0.00 0.00 0.00 2.24
2852 3718 8.492673 TGTCAACATTACTCAATCCAGATTAC 57.507 34.615 0.00 0.00 0.00 1.89
2853 3719 9.330063 GATGTCAACATTACTCAATCCAGATTA 57.670 33.333 0.00 0.00 36.57 1.75
2854 3720 7.284034 GGATGTCAACATTACTCAATCCAGATT 59.716 37.037 0.00 0.00 36.57 2.40
2855 3721 6.769822 GGATGTCAACATTACTCAATCCAGAT 59.230 38.462 0.00 0.00 36.57 2.90
2856 3722 6.115446 GGATGTCAACATTACTCAATCCAGA 58.885 40.000 0.00 0.00 36.57 3.86
2857 3723 5.882000 TGGATGTCAACATTACTCAATCCAG 59.118 40.000 0.00 0.00 36.57 3.86
2858 3724 5.814481 TGGATGTCAACATTACTCAATCCA 58.186 37.500 0.00 0.00 36.57 3.41
2859 3725 6.769822 AGATGGATGTCAACATTACTCAATCC 59.230 38.462 0.00 0.00 36.57 3.01
2860 3726 7.798596 AGATGGATGTCAACATTACTCAATC 57.201 36.000 0.00 0.00 36.57 2.67
2861 3727 9.857656 ATAAGATGGATGTCAACATTACTCAAT 57.142 29.630 0.00 0.00 36.57 2.57
2862 3728 9.330063 GATAAGATGGATGTCAACATTACTCAA 57.670 33.333 0.00 0.00 36.57 3.02
2863 3729 7.933577 GGATAAGATGGATGTCAACATTACTCA 59.066 37.037 0.00 0.00 36.57 3.41
2864 3730 7.933577 TGGATAAGATGGATGTCAACATTACTC 59.066 37.037 0.00 0.00 36.57 2.59
2865 3731 7.805163 TGGATAAGATGGATGTCAACATTACT 58.195 34.615 0.00 0.00 36.57 2.24
2866 3732 8.509690 CATGGATAAGATGGATGTCAACATTAC 58.490 37.037 0.00 0.00 36.57 1.89
2867 3733 7.666804 CCATGGATAAGATGGATGTCAACATTA 59.333 37.037 5.56 0.00 42.81 1.90
2868 3734 6.492429 CCATGGATAAGATGGATGTCAACATT 59.508 38.462 5.56 0.00 42.81 2.71
2869 3735 6.008331 CCATGGATAAGATGGATGTCAACAT 58.992 40.000 5.56 0.00 42.81 2.71
2870 3736 5.132480 TCCATGGATAAGATGGATGTCAACA 59.868 40.000 11.44 0.00 43.71 3.33
2871 3737 5.624159 TCCATGGATAAGATGGATGTCAAC 58.376 41.667 11.44 0.00 43.71 3.18
2872 3738 5.910355 TCCATGGATAAGATGGATGTCAA 57.090 39.130 11.44 0.00 43.71 3.18
2873 3739 5.624159 GTTCCATGGATAAGATGGATGTCA 58.376 41.667 17.06 0.00 47.00 3.58
2874 3740 4.692625 CGTTCCATGGATAAGATGGATGTC 59.307 45.833 17.06 0.00 47.00 3.06
2875 3741 4.505566 CCGTTCCATGGATAAGATGGATGT 60.506 45.833 17.06 0.00 47.00 3.06
2876 3742 4.005650 CCGTTCCATGGATAAGATGGATG 58.994 47.826 17.06 3.05 47.00 3.51
2877 3743 3.909995 TCCGTTCCATGGATAAGATGGAT 59.090 43.478 17.06 0.00 47.00 3.41
2878 3744 3.313791 TCCGTTCCATGGATAAGATGGA 58.686 45.455 17.06 17.48 46.32 3.41
2879 3745 3.769739 TCCGTTCCATGGATAAGATGG 57.230 47.619 17.06 15.32 41.70 3.51
2880 3746 4.898320 TCATCCGTTCCATGGATAAGATG 58.102 43.478 27.14 27.14 41.94 2.90
2881 3747 5.249163 TGATCATCCGTTCCATGGATAAGAT 59.751 40.000 17.06 14.38 41.94 2.40
2882 3748 4.592778 TGATCATCCGTTCCATGGATAAGA 59.407 41.667 17.06 12.64 41.94 2.10
2883 3749 4.898320 TGATCATCCGTTCCATGGATAAG 58.102 43.478 17.06 9.83 41.94 1.73
2884 3750 4.972751 TGATCATCCGTTCCATGGATAA 57.027 40.909 17.06 0.00 41.94 1.75
2885 3751 4.972751 TTGATCATCCGTTCCATGGATA 57.027 40.909 17.06 3.77 41.94 2.59
2886 3752 3.862877 TTGATCATCCGTTCCATGGAT 57.137 42.857 17.06 0.00 44.60 3.41
2887 3753 3.643199 TTTGATCATCCGTTCCATGGA 57.357 42.857 11.44 11.44 37.75 3.41
2888 3754 3.884693 TGATTTGATCATCCGTTCCATGG 59.115 43.478 4.97 4.97 33.59 3.66
2889 3755 5.503662 TTGATTTGATCATCCGTTCCATG 57.496 39.130 0.00 0.00 39.39 3.66
2890 3756 6.720112 ATTTGATTTGATCATCCGTTCCAT 57.280 33.333 0.00 0.00 39.39 3.41
2891 3757 6.331845 CAATTTGATTTGATCATCCGTTCCA 58.668 36.000 0.00 0.00 39.39 3.53
2892 3758 5.232838 GCAATTTGATTTGATCATCCGTTCC 59.767 40.000 0.00 0.00 39.39 3.62
2893 3759 5.806502 TGCAATTTGATTTGATCATCCGTTC 59.193 36.000 0.00 0.00 39.39 3.95
2894 3760 5.722263 TGCAATTTGATTTGATCATCCGTT 58.278 33.333 0.00 0.00 39.39 4.44
2895 3761 5.105635 ACTGCAATTTGATTTGATCATCCGT 60.106 36.000 0.00 0.00 39.39 4.69
2896 3762 5.345702 ACTGCAATTTGATTTGATCATCCG 58.654 37.500 0.00 0.00 39.39 4.18
2897 3763 7.332430 TGAAACTGCAATTTGATTTGATCATCC 59.668 33.333 0.00 0.00 39.39 3.51
2898 3764 8.246908 TGAAACTGCAATTTGATTTGATCATC 57.753 30.769 0.00 0.00 39.39 2.92
2899 3765 7.876068 ACTGAAACTGCAATTTGATTTGATCAT 59.124 29.630 0.00 0.00 39.39 2.45
2900 3766 7.170151 CACTGAAACTGCAATTTGATTTGATCA 59.830 33.333 0.00 0.00 37.55 2.92
2901 3767 7.507304 CACTGAAACTGCAATTTGATTTGATC 58.493 34.615 0.00 0.00 0.00 2.92
2902 3768 6.073440 GCACTGAAACTGCAATTTGATTTGAT 60.073 34.615 0.00 0.00 34.56 2.57
2903 3769 5.234757 GCACTGAAACTGCAATTTGATTTGA 59.765 36.000 0.00 0.00 34.56 2.69
2904 3770 5.006844 TGCACTGAAACTGCAATTTGATTTG 59.993 36.000 0.00 0.00 41.70 2.32
2905 3771 5.117584 TGCACTGAAACTGCAATTTGATTT 58.882 33.333 0.00 0.00 41.70 2.17
2906 3772 4.695396 TGCACTGAAACTGCAATTTGATT 58.305 34.783 0.00 0.00 41.70 2.57
2907 3773 4.325028 TGCACTGAAACTGCAATTTGAT 57.675 36.364 0.00 0.00 41.70 2.57
2908 3774 3.797451 TGCACTGAAACTGCAATTTGA 57.203 38.095 0.00 0.00 41.70 2.69
2915 3781 0.867746 TCGACATGCACTGAAACTGC 59.132 50.000 0.00 0.00 35.03 4.40
2916 3782 3.607422 TTTCGACATGCACTGAAACTG 57.393 42.857 0.00 0.00 0.00 3.16
2917 3783 4.539870 CAATTTCGACATGCACTGAAACT 58.460 39.130 0.00 0.00 33.59 2.66
2918 3784 3.670055 CCAATTTCGACATGCACTGAAAC 59.330 43.478 0.00 0.00 33.59 2.78
2919 3785 3.305267 CCCAATTTCGACATGCACTGAAA 60.305 43.478 0.00 0.00 35.09 2.69
2920 3786 2.228582 CCCAATTTCGACATGCACTGAA 59.771 45.455 0.00 0.00 0.00 3.02
2921 3787 1.811965 CCCAATTTCGACATGCACTGA 59.188 47.619 0.00 0.00 0.00 3.41
2922 3788 1.811965 TCCCAATTTCGACATGCACTG 59.188 47.619 0.00 0.00 0.00 3.66
2923 3789 2.198827 TCCCAATTTCGACATGCACT 57.801 45.000 0.00 0.00 0.00 4.40
2924 3790 3.508744 AATCCCAATTTCGACATGCAC 57.491 42.857 0.00 0.00 0.00 4.57
2925 3791 4.244066 CAAAATCCCAATTTCGACATGCA 58.756 39.130 0.00 0.00 33.93 3.96
2926 3792 3.618150 CCAAAATCCCAATTTCGACATGC 59.382 43.478 0.00 0.00 33.93 4.06
2927 3793 4.864247 GTCCAAAATCCCAATTTCGACATG 59.136 41.667 0.00 0.00 35.80 3.21
2928 3794 4.526262 TGTCCAAAATCCCAATTTCGACAT 59.474 37.500 8.51 0.00 38.19 3.06
2929 3795 3.891977 TGTCCAAAATCCCAATTTCGACA 59.108 39.130 8.51 8.51 39.40 4.35
2930 3796 4.234574 GTGTCCAAAATCCCAATTTCGAC 58.765 43.478 0.00 0.00 36.03 4.20
2931 3797 3.057876 CGTGTCCAAAATCCCAATTTCGA 60.058 43.478 0.00 0.00 33.93 3.71
2932 3798 3.241701 CGTGTCCAAAATCCCAATTTCG 58.758 45.455 0.00 0.00 33.93 3.46
2933 3799 2.993220 GCGTGTCCAAAATCCCAATTTC 59.007 45.455 0.00 0.00 33.93 2.17
2934 3800 2.632512 AGCGTGTCCAAAATCCCAATTT 59.367 40.909 0.00 0.00 36.64 1.82
2935 3801 2.247358 AGCGTGTCCAAAATCCCAATT 58.753 42.857 0.00 0.00 0.00 2.32
2936 3802 1.923356 AGCGTGTCCAAAATCCCAAT 58.077 45.000 0.00 0.00 0.00 3.16
2937 3803 2.156098 GTAGCGTGTCCAAAATCCCAA 58.844 47.619 0.00 0.00 0.00 4.12
2938 3804 1.612199 GGTAGCGTGTCCAAAATCCCA 60.612 52.381 0.00 0.00 0.00 4.37
2939 3805 1.092348 GGTAGCGTGTCCAAAATCCC 58.908 55.000 0.00 0.00 0.00 3.85
2940 3806 0.725117 CGGTAGCGTGTCCAAAATCC 59.275 55.000 6.07 0.00 0.00 3.01
2941 3807 0.725117 CCGGTAGCGTGTCCAAAATC 59.275 55.000 13.99 0.00 0.00 2.17
2942 3808 0.035739 ACCGGTAGCGTGTCCAAAAT 59.964 50.000 4.49 0.00 0.00 1.82
2943 3809 1.446791 ACCGGTAGCGTGTCCAAAA 59.553 52.632 4.49 0.00 0.00 2.44
2944 3810 3.140506 ACCGGTAGCGTGTCCAAA 58.859 55.556 4.49 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.