Multiple sequence alignment - TraesCS7B01G021400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G021400 chr7B 100.000 5472 0 0 1 5472 19685288 19679817 0.000000e+00 10105.0
1 TraesCS7B01G021400 chr7B 93.490 1275 64 10 3257 4517 19536684 19535415 0.000000e+00 1877.0
2 TraesCS7B01G021400 chr7B 84.795 1243 129 33 2053 3265 19538300 19537088 0.000000e+00 1194.0
3 TraesCS7B01G021400 chr7B 96.959 559 14 3 4914 5472 470296011 470296566 0.000000e+00 935.0
4 TraesCS7B01G021400 chr7B 86.010 822 81 15 2321 3139 19659155 19658365 0.000000e+00 850.0
5 TraesCS7B01G021400 chr7B 80.879 774 78 23 1006 1753 19539391 19538662 3.730000e-151 545.0
6 TraesCS7B01G021400 chr7B 87.864 206 11 2 4682 4886 19535055 19534863 4.260000e-56 230.0
7 TraesCS7B01G021400 chr7B 95.489 133 6 0 4532 4664 19535175 19535043 4.290000e-51 213.0
8 TraesCS7B01G021400 chr7B 95.455 44 2 0 3137 3180 19554177 19554134 2.730000e-08 71.3
9 TraesCS7B01G021400 chr7D 86.774 3289 312 75 1299 4512 75052543 75049303 0.000000e+00 3550.0
10 TraesCS7B01G021400 chr7D 96.708 243 8 0 1023 1265 75052782 75052540 6.600000e-109 405.0
11 TraesCS7B01G021400 chr7D 80.508 236 37 8 4528 4758 75048715 75048484 7.290000e-39 172.0
12 TraesCS7B01G021400 chr7A 91.630 2473 143 35 2081 4519 78670646 78668204 0.000000e+00 3362.0
13 TraesCS7B01G021400 chr7A 86.897 809 69 11 1016 1795 78671892 78671092 0.000000e+00 872.0
14 TraesCS7B01G021400 chr7A 83.429 700 90 17 74 764 78679352 78678670 1.290000e-175 627.0
15 TraesCS7B01G021400 chr7A 88.931 262 21 5 758 1014 78672279 78672021 3.180000e-82 316.0
16 TraesCS7B01G021400 chr7A 95.946 74 3 0 1 74 64556590 64556517 2.680000e-23 121.0
17 TraesCS7B01G021400 chr7A 94.444 72 3 1 4528 4598 78667937 78667866 5.800000e-20 110.0
18 TraesCS7B01G021400 chr5A 96.803 563 16 2 4911 5472 664388861 664389422 0.000000e+00 939.0
19 TraesCS7B01G021400 chr5A 96.637 565 17 2 4908 5472 653659164 653659726 0.000000e+00 937.0
20 TraesCS7B01G021400 chr4B 97.127 557 15 1 4916 5472 535083487 535084042 0.000000e+00 939.0
21 TraesCS7B01G021400 chr4B 96.034 580 17 5 4894 5472 665292968 665293542 0.000000e+00 939.0
22 TraesCS7B01G021400 chr4B 83.333 246 39 2 3416 3660 428206036 428205792 5.520000e-55 226.0
23 TraesCS7B01G021400 chr4B 84.343 198 30 1 1466 1662 428212544 428212347 5.590000e-45 193.0
24 TraesCS7B01G021400 chr3B 96.479 568 15 4 4906 5472 547819070 547818507 0.000000e+00 933.0
25 TraesCS7B01G021400 chr3B 96.309 569 16 4 4907 5472 171120922 171120356 0.000000e+00 929.0
26 TraesCS7B01G021400 chr3B 95.946 74 3 0 1 74 661353416 661353343 2.680000e-23 121.0
27 TraesCS7B01G021400 chr3B 95.946 74 3 0 1 74 809620548 809620475 2.680000e-23 121.0
28 TraesCS7B01G021400 chr3A 96.316 570 15 5 4906 5472 378336969 378337535 0.000000e+00 931.0
29 TraesCS7B01G021400 chr3A 88.991 109 12 0 3754 3862 737897130 737897238 9.560000e-28 135.0
30 TraesCS7B01G021400 chr4A 96.303 568 18 3 4905 5472 744302411 744302975 0.000000e+00 929.0
31 TraesCS7B01G021400 chr4A 85.106 188 28 0 1459 1646 117668537 117668724 5.590000e-45 193.0
32 TraesCS7B01G021400 chr4A 83.920 199 30 2 3446 3643 117691807 117692004 7.240000e-44 189.0
33 TraesCS7B01G021400 chr4A 95.946 74 3 0 1 74 342936504 342936431 2.680000e-23 121.0
34 TraesCS7B01G021400 chr4D 81.746 378 61 7 2076 2451 348054820 348054449 5.320000e-80 309.0
35 TraesCS7B01G021400 chr4D 84.127 252 38 2 3410 3660 348049435 348049185 5.480000e-60 243.0
36 TraesCS7B01G021400 chr2D 95.946 74 3 0 1 74 544233622 544233695 2.680000e-23 121.0
37 TraesCS7B01G021400 chr1D 95.946 74 3 0 1 74 1510351 1510278 2.680000e-23 121.0
38 TraesCS7B01G021400 chr1B 94.805 77 4 0 1 77 23574256 23574332 2.680000e-23 121.0
39 TraesCS7B01G021400 chr1B 96.000 75 2 1 1 74 540097193 540097267 2.680000e-23 121.0
40 TraesCS7B01G021400 chr1B 95.946 74 3 0 1 74 642912000 642912073 2.680000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G021400 chr7B 19679817 19685288 5471 True 10105.000000 10105 100.000000 1 5472 1 chr7B.!!$R3 5471
1 TraesCS7B01G021400 chr7B 470296011 470296566 555 False 935.000000 935 96.959000 4914 5472 1 chr7B.!!$F1 558
2 TraesCS7B01G021400 chr7B 19658365 19659155 790 True 850.000000 850 86.010000 2321 3139 1 chr7B.!!$R2 818
3 TraesCS7B01G021400 chr7B 19534863 19539391 4528 True 811.800000 1877 88.503400 1006 4886 5 chr7B.!!$R4 3880
4 TraesCS7B01G021400 chr7D 75048484 75052782 4298 True 1375.666667 3550 87.996667 1023 4758 3 chr7D.!!$R1 3735
5 TraesCS7B01G021400 chr7A 78667866 78672279 4413 True 1165.000000 3362 90.475500 758 4598 4 chr7A.!!$R3 3840
6 TraesCS7B01G021400 chr7A 78678670 78679352 682 True 627.000000 627 83.429000 74 764 1 chr7A.!!$R2 690
7 TraesCS7B01G021400 chr5A 664388861 664389422 561 False 939.000000 939 96.803000 4911 5472 1 chr5A.!!$F2 561
8 TraesCS7B01G021400 chr5A 653659164 653659726 562 False 937.000000 937 96.637000 4908 5472 1 chr5A.!!$F1 564
9 TraesCS7B01G021400 chr4B 535083487 535084042 555 False 939.000000 939 97.127000 4916 5472 1 chr4B.!!$F1 556
10 TraesCS7B01G021400 chr4B 665292968 665293542 574 False 939.000000 939 96.034000 4894 5472 1 chr4B.!!$F2 578
11 TraesCS7B01G021400 chr3B 547818507 547819070 563 True 933.000000 933 96.479000 4906 5472 1 chr3B.!!$R2 566
12 TraesCS7B01G021400 chr3B 171120356 171120922 566 True 929.000000 929 96.309000 4907 5472 1 chr3B.!!$R1 565
13 TraesCS7B01G021400 chr3A 378336969 378337535 566 False 931.000000 931 96.316000 4906 5472 1 chr3A.!!$F1 566
14 TraesCS7B01G021400 chr4A 744302411 744302975 564 False 929.000000 929 96.303000 4905 5472 1 chr4A.!!$F3 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.040958 GCGCCTCATTTTATCCAGCG 60.041 55.0 0.00 0.00 44.54 5.18 F
33 34 0.040958 CGCCTCATTTTATCCAGCGC 60.041 55.0 0.00 0.00 35.33 5.92 F
186 187 0.108138 CACCTTTAGGCGTGGAGGAG 60.108 60.0 14.45 5.29 39.32 3.69 F
963 975 0.394080 CCGTCCTCTCCTACTTCCGT 60.394 60.0 0.00 0.00 0.00 4.69 F
2309 2755 1.028868 GGTGCTCAGACATTGCCCTC 61.029 60.0 0.00 0.00 0.00 4.30 F
3862 4775 0.764890 TGCCATATGGTACTGCCTCC 59.235 55.0 22.79 3.60 38.35 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 1674 1.202114 CCAATGAATGACCCCAACACG 59.798 52.381 0.00 0.0 0.00 4.49 R
1555 1737 1.303236 CGGCACAAAGATCCCACCA 60.303 57.895 0.00 0.0 0.00 4.17 R
2181 2627 1.149401 GGGCTGAATGAGTAGGGCC 59.851 63.158 0.00 0.0 38.92 5.80 R
2640 3106 1.555075 AGACGCGGCATTATATCCCAT 59.445 47.619 17.71 0.0 0.00 4.00 R
3972 4885 0.038744 CTCACAACCCTCTGGCCAAT 59.961 55.000 7.01 0.0 33.59 3.16 R
4768 6308 0.038744 CTTCCAGGTCAAGCCCATGT 59.961 55.000 0.00 0.0 38.26 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.691674 CTAGGTAGCAGCAGCGCCTC 62.692 65.000 19.78 0.00 45.26 4.70
24 25 2.570181 GCAGCAGCGCCTCATTTT 59.430 55.556 2.29 0.00 0.00 1.82
25 26 1.802636 GCAGCAGCGCCTCATTTTA 59.197 52.632 2.29 0.00 0.00 1.52
26 27 0.383231 GCAGCAGCGCCTCATTTTAT 59.617 50.000 2.29 0.00 0.00 1.40
27 28 1.598924 GCAGCAGCGCCTCATTTTATC 60.599 52.381 2.29 0.00 0.00 1.75
28 29 1.002033 CAGCAGCGCCTCATTTTATCC 60.002 52.381 2.29 0.00 0.00 2.59
29 30 1.024271 GCAGCGCCTCATTTTATCCA 58.976 50.000 2.29 0.00 0.00 3.41
30 31 1.002033 GCAGCGCCTCATTTTATCCAG 60.002 52.381 2.29 0.00 0.00 3.86
31 32 1.002033 CAGCGCCTCATTTTATCCAGC 60.002 52.381 2.29 0.00 0.00 4.85
32 33 0.040958 GCGCCTCATTTTATCCAGCG 60.041 55.000 0.00 0.00 44.54 5.18
33 34 0.040958 CGCCTCATTTTATCCAGCGC 60.041 55.000 0.00 0.00 35.33 5.92
34 35 1.312815 GCCTCATTTTATCCAGCGCT 58.687 50.000 2.64 2.64 0.00 5.92
35 36 2.494059 GCCTCATTTTATCCAGCGCTA 58.506 47.619 10.99 0.00 0.00 4.26
36 37 2.224314 GCCTCATTTTATCCAGCGCTAC 59.776 50.000 10.99 0.00 0.00 3.58
37 38 3.733337 CCTCATTTTATCCAGCGCTACT 58.267 45.455 10.99 0.00 0.00 2.57
38 39 3.496130 CCTCATTTTATCCAGCGCTACTG 59.504 47.826 10.99 1.22 46.77 2.74
39 40 2.872245 TCATTTTATCCAGCGCTACTGC 59.128 45.455 10.99 0.00 45.78 4.40
41 42 3.812156 TTTTATCCAGCGCTACTGCTA 57.188 42.857 10.99 0.00 45.23 3.49
42 43 3.812156 TTTATCCAGCGCTACTGCTAA 57.188 42.857 10.99 1.14 45.23 3.09
43 44 3.371102 TTATCCAGCGCTACTGCTAAG 57.629 47.619 10.99 0.00 45.23 2.18
44 45 1.403814 ATCCAGCGCTACTGCTAAGA 58.596 50.000 10.99 0.00 45.23 2.10
45 46 1.403814 TCCAGCGCTACTGCTAAGAT 58.596 50.000 10.99 0.00 45.23 2.40
46 47 1.757118 TCCAGCGCTACTGCTAAGATT 59.243 47.619 10.99 0.00 45.23 2.40
47 48 2.131183 CCAGCGCTACTGCTAAGATTC 58.869 52.381 10.99 0.00 45.23 2.52
48 49 2.223923 CCAGCGCTACTGCTAAGATTCT 60.224 50.000 10.99 0.00 45.23 2.40
49 50 2.793790 CAGCGCTACTGCTAAGATTCTG 59.206 50.000 10.99 0.00 45.23 3.02
50 51 2.428890 AGCGCTACTGCTAAGATTCTGT 59.571 45.455 8.99 0.00 45.14 3.41
51 52 2.537625 GCGCTACTGCTAAGATTCTGTG 59.462 50.000 0.00 0.00 36.97 3.66
52 53 3.775202 CGCTACTGCTAAGATTCTGTGT 58.225 45.455 0.00 0.00 36.97 3.72
53 54 4.733815 GCGCTACTGCTAAGATTCTGTGTA 60.734 45.833 0.00 0.00 36.97 2.90
54 55 5.524284 CGCTACTGCTAAGATTCTGTGTAT 58.476 41.667 0.00 0.00 36.97 2.29
55 56 6.669278 CGCTACTGCTAAGATTCTGTGTATA 58.331 40.000 0.00 0.00 36.97 1.47
56 57 7.139392 CGCTACTGCTAAGATTCTGTGTATAA 58.861 38.462 0.00 0.00 36.97 0.98
57 58 7.324856 CGCTACTGCTAAGATTCTGTGTATAAG 59.675 40.741 0.00 0.00 36.97 1.73
58 59 8.353684 GCTACTGCTAAGATTCTGTGTATAAGA 58.646 37.037 0.00 0.00 36.03 2.10
72 73 9.710818 TCTGTGTATAAGATTTTCCCTAGTAGT 57.289 33.333 0.00 0.00 0.00 2.73
87 88 0.325390 GTAGTGGGACTAGGGCCTGT 60.325 60.000 18.53 12.49 30.12 4.00
89 90 1.612442 GTGGGACTAGGGCCTGTCA 60.612 63.158 26.51 12.95 35.11 3.58
106 107 1.975680 GTCACACCTCCAAGACCCTTA 59.024 52.381 0.00 0.00 0.00 2.69
130 131 1.396653 CAATGTGGGCAAGGAGGATC 58.603 55.000 0.00 0.00 0.00 3.36
131 132 1.002069 AATGTGGGCAAGGAGGATCA 58.998 50.000 0.00 0.00 36.25 2.92
137 138 0.179034 GGCAAGGAGGATCAGCGATT 60.179 55.000 0.00 0.00 36.25 3.34
138 139 0.942962 GCAAGGAGGATCAGCGATTG 59.057 55.000 0.00 0.00 36.25 2.67
139 140 0.942962 CAAGGAGGATCAGCGATTGC 59.057 55.000 0.00 0.00 43.24 3.56
154 155 2.893682 ATTGCGCTGGTTAGAGGGGC 62.894 60.000 9.73 0.00 38.97 5.80
170 171 3.587095 GCGAAAACCCTAGCCACC 58.413 61.111 0.00 0.00 0.00 4.61
173 174 1.905637 CGAAAACCCTAGCCACCTTT 58.094 50.000 0.00 0.00 0.00 3.11
174 175 2.876892 GCGAAAACCCTAGCCACCTTTA 60.877 50.000 0.00 0.00 0.00 1.85
175 176 3.007635 CGAAAACCCTAGCCACCTTTAG 58.992 50.000 0.00 0.00 0.00 1.85
176 177 3.353557 GAAAACCCTAGCCACCTTTAGG 58.646 50.000 0.00 0.00 42.17 2.69
184 185 4.617875 CACCTTTAGGCGTGGAGG 57.382 61.111 7.97 7.97 39.32 4.30
185 186 1.980052 CACCTTTAGGCGTGGAGGA 59.020 57.895 14.45 0.00 39.32 3.71
186 187 0.108138 CACCTTTAGGCGTGGAGGAG 60.108 60.000 14.45 5.29 39.32 3.69
187 188 1.265454 ACCTTTAGGCGTGGAGGAGG 61.265 60.000 14.45 5.66 39.32 4.30
188 189 0.976073 CCTTTAGGCGTGGAGGAGGA 60.976 60.000 4.41 0.00 0.00 3.71
189 190 0.461961 CTTTAGGCGTGGAGGAGGAG 59.538 60.000 0.00 0.00 0.00 3.69
190 191 0.976073 TTTAGGCGTGGAGGAGGAGG 60.976 60.000 0.00 0.00 0.00 4.30
191 192 1.870941 TTAGGCGTGGAGGAGGAGGA 61.871 60.000 0.00 0.00 0.00 3.71
196 197 0.465460 CGTGGAGGAGGAGGAGAGAG 60.465 65.000 0.00 0.00 0.00 3.20
243 244 7.198306 ACTCTACAAAGTAAACGGAAATTGG 57.802 36.000 0.00 0.00 0.00 3.16
259 260 3.668141 ATTGGAACATATGGCAGTCCA 57.332 42.857 7.80 10.95 43.28 4.02
287 288 2.007608 GACTTTGATAGGCCGGTTGAC 58.992 52.381 1.90 0.00 0.00 3.18
292 293 4.431416 TTGATAGGCCGGTTGACATTAT 57.569 40.909 1.90 0.00 0.00 1.28
331 332 9.703892 AATAAGTCTCATATGACAGTGCTTATC 57.296 33.333 0.00 0.00 39.27 1.75
344 345 4.035324 CAGTGCTTATCTGCAATCTCCTTG 59.965 45.833 0.00 0.00 45.12 3.61
347 348 5.007136 GTGCTTATCTGCAATCTCCTTGTAC 59.993 44.000 0.00 0.00 45.12 2.90
354 355 5.122239 TCTGCAATCTCCTTGTACGATTTTG 59.878 40.000 0.00 0.00 37.18 2.44
360 361 7.829378 ATCTCCTTGTACGATTTTGTTCTAC 57.171 36.000 0.00 0.00 0.00 2.59
367 368 8.836268 TTGTACGATTTTGTTCTACAACCTAT 57.164 30.769 0.00 0.00 37.90 2.57
371 372 8.385898 ACGATTTTGTTCTACAACCTATTGAA 57.614 30.769 0.00 0.00 37.90 2.69
403 405 9.192642 TCCATGTCATGAACATTGATTAAATCT 57.807 29.630 14.67 0.00 46.73 2.40
437 439 5.905480 ACGGATTTGAACAAGAATTTTGC 57.095 34.783 0.00 0.00 0.00 3.68
440 442 6.018832 ACGGATTTGAACAAGAATTTTGCTTG 60.019 34.615 0.00 0.00 46.20 4.01
442 444 6.260714 GGATTTGAACAAGAATTTTGCTTGGT 59.739 34.615 9.45 3.49 45.37 3.67
446 448 2.368548 ACAAGAATTTTGCTTGGTCCCC 59.631 45.455 9.45 0.00 45.31 4.81
447 449 1.644509 AGAATTTTGCTTGGTCCCCC 58.355 50.000 0.00 0.00 0.00 5.40
473 475 3.181443 CCCCTCCCGCTAGAAATGTTTAT 60.181 47.826 0.00 0.00 0.00 1.40
475 477 3.815401 CCTCCCGCTAGAAATGTTTATGG 59.185 47.826 0.00 0.00 0.00 2.74
480 482 6.033966 CCCGCTAGAAATGTTTATGGTTTTC 58.966 40.000 0.00 0.00 0.00 2.29
481 483 6.349777 CCCGCTAGAAATGTTTATGGTTTTCA 60.350 38.462 0.00 0.00 31.94 2.69
482 484 7.087639 CCGCTAGAAATGTTTATGGTTTTCAA 58.912 34.615 0.00 0.00 31.94 2.69
483 485 7.759433 CCGCTAGAAATGTTTATGGTTTTCAAT 59.241 33.333 0.00 0.00 31.94 2.57
484 486 8.586273 CGCTAGAAATGTTTATGGTTTTCAATG 58.414 33.333 0.00 0.00 31.94 2.82
485 487 8.382875 GCTAGAAATGTTTATGGTTTTCAATGC 58.617 33.333 0.00 0.00 31.94 3.56
498 500 6.481644 TGGTTTTCAATGCAATTAAAGGTGAC 59.518 34.615 0.00 0.00 32.46 3.67
508 510 6.093495 TGCAATTAAAGGTGACGATTAGAAGG 59.907 38.462 0.00 0.00 0.00 3.46
510 512 7.464358 CAATTAAAGGTGACGATTAGAAGGTG 58.536 38.462 0.00 0.00 0.00 4.00
511 513 2.674796 AGGTGACGATTAGAAGGTGC 57.325 50.000 0.00 0.00 0.00 5.01
599 602 8.034313 TCTGCAAACTAATATGATACTCCCTT 57.966 34.615 0.00 0.00 0.00 3.95
601 604 7.801104 TGCAAACTAATATGATACTCCCTTCA 58.199 34.615 0.00 0.00 0.00 3.02
605 608 7.741554 ACTAATATGATACTCCCTTCATCCC 57.258 40.000 0.00 0.00 34.52 3.85
610 613 4.855340 TGATACTCCCTTCATCCCAAAAC 58.145 43.478 0.00 0.00 0.00 2.43
616 619 5.068215 TCCCTTCATCCCAAAACAAGTAA 57.932 39.130 0.00 0.00 0.00 2.24
638 641 6.683974 AATAAGTTGCACTAAATCAGCGAT 57.316 33.333 0.00 0.00 0.00 4.58
687 691 7.801547 AAATCAGCACATTTATTTTGAGACG 57.198 32.000 0.00 0.00 0.00 4.18
688 692 6.741992 ATCAGCACATTTATTTTGAGACGA 57.258 33.333 0.00 0.00 0.00 4.20
690 694 7.144722 TCAGCACATTTATTTTGAGACGAAT 57.855 32.000 0.00 0.00 0.00 3.34
697 701 8.883731 ACATTTATTTTGAGACGAATGGAGTAG 58.116 33.333 0.00 0.00 0.00 2.57
698 702 6.903883 TTATTTTGAGACGAATGGAGTAGC 57.096 37.500 0.00 0.00 0.00 3.58
699 703 2.961526 TTGAGACGAATGGAGTAGCC 57.038 50.000 0.00 0.00 37.10 3.93
707 714 3.930848 ACGAATGGAGTAGCCTTTTTACG 59.069 43.478 0.00 0.00 34.41 3.18
723 730 8.422457 GCCTTTTTACGTAACTTTAAGATTTGC 58.578 33.333 7.70 5.14 0.00 3.68
736 743 8.874816 ACTTTAAGATTTGCGCAAACTTTTAAA 58.125 25.926 34.09 32.92 32.51 1.52
737 744 9.142993 CTTTAAGATTTGCGCAAACTTTTAAAC 57.857 29.630 34.09 21.29 32.51 2.01
738 745 6.654793 AAGATTTGCGCAAACTTTTAAACA 57.345 29.167 35.76 12.06 32.51 2.83
742 749 2.600867 TGCGCAAACTTTTAAACAGTGC 59.399 40.909 8.16 0.00 0.00 4.40
744 751 3.245048 GCGCAAACTTTTAAACAGTGCAT 59.755 39.130 0.30 0.00 0.00 3.96
745 752 4.260172 GCGCAAACTTTTAAACAGTGCATT 60.260 37.500 0.30 0.00 0.00 3.56
747 754 5.005203 CGCAAACTTTTAAACAGTGCATTGA 59.995 36.000 16.98 0.00 0.00 2.57
773 781 5.606515 GCAAAACTTTAACGTGCATTGTACG 60.607 40.000 22.96 22.96 46.31 3.67
796 804 6.979817 ACGTACACAATTACTAGTGACACAAA 59.020 34.615 5.39 0.00 39.03 2.83
798 806 9.131416 CGTACACAATTACTAGTGACACAAATA 57.869 33.333 5.39 0.00 39.03 1.40
801 809 8.492748 ACACAATTACTAGTGACACAAATAACG 58.507 33.333 5.39 1.64 39.03 3.18
836 844 7.581814 TGATTGATAGGTGGGTCAAATCAATA 58.418 34.615 8.40 0.00 43.67 1.90
845 853 6.239176 GGTGGGTCAAATCAATAGTTGTCAAA 60.239 38.462 0.00 0.00 32.58 2.69
861 869 8.149973 AGTTGTCAAACGTACTGTTCAATTAT 57.850 30.769 0.00 0.00 40.84 1.28
864 872 9.790389 TTGTCAAACGTACTGTTCAATTATTTT 57.210 25.926 0.00 0.00 40.84 1.82
873 881 3.856521 TGTTCAATTATTTTGCATCGGCG 59.143 39.130 0.00 0.00 45.35 6.46
905 916 4.649218 TGATCTCATTCTATGGTCGTTGGA 59.351 41.667 0.00 0.00 0.00 3.53
928 939 1.592400 CTCCGTCGCCACAGGAAGTA 61.592 60.000 0.00 0.00 33.10 2.24
929 940 1.180456 TCCGTCGCCACAGGAAGTAA 61.180 55.000 0.00 0.00 0.00 2.24
947 959 7.072076 AGGAAGTAATTAATAATCTCCACCCGT 59.928 37.037 4.65 0.00 0.00 5.28
949 961 6.766429 AGTAATTAATAATCTCCACCCGTCC 58.234 40.000 0.00 0.00 0.00 4.79
963 975 0.394080 CCGTCCTCTCCTACTTCCGT 60.394 60.000 0.00 0.00 0.00 4.69
966 978 2.444421 GTCCTCTCCTACTTCCGTTCA 58.556 52.381 0.00 0.00 0.00 3.18
987 999 2.433838 GCTCTTGCAGCTCGCTCA 60.434 61.111 9.12 0.00 45.83 4.26
990 1002 2.047465 CTTGCAGCTCGCTCACCT 60.047 61.111 9.12 0.00 43.06 4.00
1050 1188 1.406903 GGGCAAGAAATGGGGATGAG 58.593 55.000 0.00 0.00 0.00 2.90
1054 1192 2.035576 GCAAGAAATGGGGATGAGATGC 59.964 50.000 0.00 0.00 0.00 3.91
1320 1492 5.948992 AGCTGTTTAAATCCAGTCTTCAC 57.051 39.130 7.44 0.00 0.00 3.18
1322 1494 4.451096 GCTGTTTAAATCCAGTCTTCACGA 59.549 41.667 7.44 0.00 0.00 4.35
1402 1582 5.359009 ACCCATTCTGCACTTCATTTCTATG 59.641 40.000 0.00 0.00 0.00 2.23
1413 1593 3.795877 TCATTTCTATGCATGAGTCGCA 58.204 40.909 10.16 0.00 44.94 5.10
1443 1625 4.156556 TGAGATGAGTTGCTAATTTGGTGC 59.843 41.667 0.00 0.00 0.00 5.01
1555 1737 2.682494 ATCGGCGGTGTAGGTGGT 60.682 61.111 7.21 0.00 0.00 4.16
1567 1749 1.633945 GTAGGTGGTGGTGGGATCTTT 59.366 52.381 0.00 0.00 0.00 2.52
1646 1828 7.665145 TGTCAAAATGTGAGGATTCAGTTCATA 59.335 33.333 0.00 0.00 36.74 2.15
1647 1829 7.965107 GTCAAAATGTGAGGATTCAGTTCATAC 59.035 37.037 0.00 0.00 36.74 2.39
1650 1832 4.998788 TGTGAGGATTCAGTTCATACTCG 58.001 43.478 0.00 0.00 34.62 4.18
1657 1843 6.490381 AGGATTCAGTTCATACTCGTGCTATA 59.510 38.462 0.00 0.00 30.26 1.31
1663 1849 9.031360 TCAGTTCATACTCGTGCTATAATTTTC 57.969 33.333 0.00 0.00 30.26 2.29
1664 1850 7.998767 CAGTTCATACTCGTGCTATAATTTTCG 59.001 37.037 0.00 0.00 30.26 3.46
1666 1852 7.618964 TCATACTCGTGCTATAATTTTCGTC 57.381 36.000 0.00 0.00 0.00 4.20
1668 1854 8.562052 TCATACTCGTGCTATAATTTTCGTCTA 58.438 33.333 0.00 0.00 0.00 2.59
1669 1855 8.628279 CATACTCGTGCTATAATTTTCGTCTAC 58.372 37.037 0.00 0.00 0.00 2.59
1670 1856 6.793349 ACTCGTGCTATAATTTTCGTCTACT 58.207 36.000 0.00 0.00 0.00 2.57
1671 1857 6.911511 ACTCGTGCTATAATTTTCGTCTACTC 59.088 38.462 0.00 0.00 0.00 2.59
1672 1858 6.788243 TCGTGCTATAATTTTCGTCTACTCA 58.212 36.000 0.00 0.00 0.00 3.41
1673 1859 6.910972 TCGTGCTATAATTTTCGTCTACTCAG 59.089 38.462 0.00 0.00 0.00 3.35
1676 1862 9.250624 GTGCTATAATTTTCGTCTACTCAGATT 57.749 33.333 0.00 0.00 32.09 2.40
1677 1863 9.249457 TGCTATAATTTTCGTCTACTCAGATTG 57.751 33.333 0.00 0.00 32.09 2.67
1678 1864 8.217778 GCTATAATTTTCGTCTACTCAGATTGC 58.782 37.037 0.00 0.00 32.09 3.56
1682 1871 8.492673 AATTTTCGTCTACTCAGATTGCATTA 57.507 30.769 0.00 0.00 32.09 1.90
1683 1872 6.887376 TTTCGTCTACTCAGATTGCATTAC 57.113 37.500 0.00 0.00 32.09 1.89
1685 1874 5.582550 TCGTCTACTCAGATTGCATTACTG 58.417 41.667 8.39 8.39 32.09 2.74
1694 1883 8.887717 ACTCAGATTGCATTACTGTTCTTTATC 58.112 33.333 12.59 0.00 33.93 1.75
1724 1914 9.976511 ATTCAGATTGTATTATTTGCATGAAGG 57.023 29.630 0.00 0.00 0.00 3.46
1726 1916 7.068470 TCAGATTGTATTATTTGCATGAAGGCA 59.932 33.333 0.00 0.00 43.19 4.75
1739 1929 5.939883 TGCATGAAGGCATACATATCTTACC 59.060 40.000 0.00 0.00 39.25 2.85
1743 1933 5.538813 TGAAGGCATACATATCTTACCGAGT 59.461 40.000 0.00 0.00 0.00 4.18
1753 1943 7.788026 ACATATCTTACCGAGTAATTTGGTGA 58.212 34.615 0.00 0.00 43.81 4.02
1755 1945 8.765219 CATATCTTACCGAGTAATTTGGTGAAG 58.235 37.037 0.00 0.71 43.81 3.02
1768 1958 6.821616 ATTTGGTGAAGATATCTGGAGTCT 57.178 37.500 5.86 0.00 0.00 3.24
1769 1959 5.860941 TTGGTGAAGATATCTGGAGTCTC 57.139 43.478 5.86 0.00 0.00 3.36
1770 1960 4.219115 TGGTGAAGATATCTGGAGTCTCC 58.781 47.826 12.40 12.40 36.96 3.71
1778 1968 6.149616 AGATATCTGGAGTCTCCCATTTCTT 58.850 40.000 16.60 0.00 35.03 2.52
1779 1969 6.619023 AGATATCTGGAGTCTCCCATTTCTTT 59.381 38.462 16.60 0.00 35.03 2.52
1780 1970 4.559862 TCTGGAGTCTCCCATTTCTTTC 57.440 45.455 16.60 0.00 35.03 2.62
1814 2081 2.862541 TGCATACATGGGCCACTTATC 58.137 47.619 9.28 3.92 0.00 1.75
1827 2094 4.136796 GCCACTTATCCTGCACATTATGA 58.863 43.478 0.00 0.00 0.00 2.15
1830 2097 5.766670 CCACTTATCCTGCACATTATGACAT 59.233 40.000 0.00 0.00 0.00 3.06
1832 2099 7.358066 CACTTATCCTGCACATTATGACATTC 58.642 38.462 0.00 0.00 0.00 2.67
1845 2198 9.890629 ACATTATGACATTCTAAACTAGCTTCA 57.109 29.630 0.00 0.00 0.00 3.02
1851 2204 9.066892 TGACATTCTAAACTAGCTTCAAACAAT 57.933 29.630 0.00 0.00 0.00 2.71
1852 2205 9.548208 GACATTCTAAACTAGCTTCAAACAATC 57.452 33.333 0.00 0.00 0.00 2.67
1856 2209 8.677148 TCTAAACTAGCTTCAAACAATCAAGT 57.323 30.769 0.00 0.00 0.00 3.16
1857 2210 9.772973 TCTAAACTAGCTTCAAACAATCAAGTA 57.227 29.630 0.00 0.00 0.00 2.24
1945 2317 8.783093 TCTACAAATTCAAGTTCAAGGTACATG 58.217 33.333 0.00 0.00 0.00 3.21
1956 2328 8.268850 AGTTCAAGGTACATGTCAAATGTATC 57.731 34.615 0.00 0.00 36.94 2.24
1958 2330 5.815222 TCAAGGTACATGTCAAATGTATCCG 59.185 40.000 0.00 0.00 36.53 4.18
1972 2344 5.657470 ATGTATCCGATTGATTGAACACG 57.343 39.130 0.00 0.00 34.76 4.49
1973 2345 3.868661 TGTATCCGATTGATTGAACACGG 59.131 43.478 0.00 0.00 37.86 4.94
1975 2347 3.260475 TCCGATTGATTGAACACGGAT 57.740 42.857 0.00 0.00 39.43 4.18
1987 2359 8.625651 TGATTGAACACGGATTTTTCTCTTAAA 58.374 29.630 0.00 0.00 0.00 1.52
1989 2361 9.810545 ATTGAACACGGATTTTTCTCTTAAAAA 57.189 25.926 0.00 0.00 34.15 1.94
2038 2427 3.368116 CGGGAGAACGTATCTTTGGAAGT 60.368 47.826 0.00 0.00 38.96 3.01
2048 2492 7.982224 ACGTATCTTTGGAAGTTTTATTAGGC 58.018 34.615 0.00 0.00 0.00 3.93
2058 2502 7.833682 TGGAAGTTTTATTAGGCTCATGATTGA 59.166 33.333 0.00 0.00 0.00 2.57
2072 2518 6.018588 GCTCATGATTGATTCTGAGAACTGAG 60.019 42.308 0.00 3.40 37.85 3.35
2074 2520 7.793036 TCATGATTGATTCTGAGAACTGAGAT 58.207 34.615 0.00 0.00 0.00 2.75
2075 2521 8.921205 TCATGATTGATTCTGAGAACTGAGATA 58.079 33.333 0.00 0.00 0.00 1.98
2076 2522 9.543783 CATGATTGATTCTGAGAACTGAGATAA 57.456 33.333 0.00 0.00 0.00 1.75
2148 2594 2.037136 CCTCAAGCTGAAGCACCCG 61.037 63.158 4.90 0.00 45.16 5.28
2181 2627 5.718724 TGCCAGTGATAGACTATGATCTG 57.281 43.478 0.00 5.64 31.73 2.90
2187 2633 5.015710 AGTGATAGACTATGATCTGGCCCTA 59.984 44.000 0.00 0.00 30.86 3.53
2193 2639 4.497516 ACTATGATCTGGCCCTACTCATT 58.502 43.478 0.00 0.00 0.00 2.57
2309 2755 1.028868 GGTGCTCAGACATTGCCCTC 61.029 60.000 0.00 0.00 0.00 4.30
2335 2781 3.006940 TGCAGCAACCGTTAATCCTAAG 58.993 45.455 0.00 0.00 0.00 2.18
2342 2791 5.392595 GCAACCGTTAATCCTAAGCAATGAA 60.393 40.000 0.00 0.00 0.00 2.57
2344 2793 7.257722 CAACCGTTAATCCTAAGCAATGAATT 58.742 34.615 0.00 0.00 0.00 2.17
2345 2794 7.027778 ACCGTTAATCCTAAGCAATGAATTC 57.972 36.000 0.00 0.00 0.00 2.17
2359 2808 5.390885 GCAATGAATTCGTAGCTGACTTCAA 60.391 40.000 9.82 0.00 39.82 2.69
2364 2813 5.551760 ATTCGTAGCTGACTTCAAAATGG 57.448 39.130 0.00 0.00 0.00 3.16
2370 2819 3.960102 AGCTGACTTCAAAATGGTTTCCA 59.040 39.130 0.00 0.00 38.19 3.53
2394 2843 9.203421 CCAAATTAAATTCCAGTTACTTCAACC 57.797 33.333 0.00 0.00 37.93 3.77
2415 2864 3.569701 CCAAAGCTTTTCTGAAGGCTGTA 59.430 43.478 9.53 0.00 46.20 2.74
2520 2977 6.692849 TCAGGGATGCTGATAAGTGATAAT 57.307 37.500 0.00 0.00 0.00 1.28
2522 2979 6.270695 TCAGGGATGCTGATAAGTGATAATCA 59.729 38.462 0.00 0.00 0.00 2.57
2563 3029 3.565482 TCAGGAGACAGCAAAACAATCAC 59.435 43.478 0.00 0.00 0.00 3.06
2577 3043 7.465781 GCAAAACAATCACAGCAAACAAGTAAT 60.466 33.333 0.00 0.00 0.00 1.89
2591 3057 7.358848 GCAAACAAGTAATTGACCAATAAACCG 60.359 37.037 10.35 0.00 0.00 4.44
2594 3060 8.117813 ACAAGTAATTGACCAATAAACCGAAT 57.882 30.769 10.35 0.00 0.00 3.34
2633 3099 2.656085 CGCGGAAAAATGTTGCTTACA 58.344 42.857 0.00 0.00 41.97 2.41
2657 3123 3.452755 TCTATGGGATATAATGCCGCG 57.547 47.619 0.00 0.00 44.83 6.46
2658 3124 2.764010 TCTATGGGATATAATGCCGCGT 59.236 45.455 4.92 0.00 44.83 6.01
2669 3135 1.738346 ATGCCGCGTCTATCTGCAGA 61.738 55.000 20.79 20.79 35.10 4.26
2670 3136 1.946650 GCCGCGTCTATCTGCAGAC 60.947 63.158 20.97 6.12 41.33 3.51
2681 3147 1.040646 TCTGCAGACGAAGAACAGGT 58.959 50.000 13.74 0.00 0.00 4.00
3122 3605 6.043938 TCCCTGTTCCCTATGTTATCCATAAC 59.956 42.308 2.92 2.92 42.21 1.89
3365 4262 3.946558 GGTACTGTACCGACTCTCTTCAT 59.053 47.826 20.34 0.00 39.39 2.57
3378 4275 6.514212 CGACTCTCTTCATCTCGGTATTCAAT 60.514 42.308 0.00 0.00 0.00 2.57
3379 4276 6.744112 ACTCTCTTCATCTCGGTATTCAATC 58.256 40.000 0.00 0.00 0.00 2.67
3395 4293 7.222611 GGTATTCAATCAAGCGCATACAAAATT 59.777 33.333 11.47 0.00 0.00 1.82
3401 4299 4.157472 TCAAGCGCATACAAAATTGATCCA 59.843 37.500 11.47 0.00 0.00 3.41
3509 4407 5.072329 GGAGGAGGGTGATATCATCAAAGAA 59.928 44.000 17.64 0.00 41.69 2.52
3513 4411 6.484977 GGAGGGTGATATCATCAAAGAAGAAC 59.515 42.308 17.64 0.00 41.69 3.01
3519 4417 6.988580 TGATATCATCAAAGAAGAACGAGCAT 59.011 34.615 0.00 0.00 36.11 3.79
3570 4468 1.302033 CTGCTTCTTGGGCGTCACT 60.302 57.895 0.00 0.00 0.00 3.41
3862 4775 0.764890 TGCCATATGGTACTGCCTCC 59.235 55.000 22.79 3.60 38.35 4.30
3867 4780 4.074970 CCATATGGTACTGCCTCCATTTC 58.925 47.826 14.09 0.00 43.22 2.17
3956 4869 0.824109 TCTACTTGACCATCCTGGCG 59.176 55.000 0.00 0.00 42.67 5.69
3974 4887 1.882198 CGTTTTTCGCTGCGATCATT 58.118 45.000 26.51 0.00 35.23 2.57
4064 4977 2.607631 TCATGATCTTCATCAGCGCA 57.392 45.000 11.47 0.00 42.53 6.09
4100 5013 1.563577 GGTTTCCCTCCCCTCACTCC 61.564 65.000 0.00 0.00 0.00 3.85
4198 5112 1.691976 TCTCCAACACGATCCACAAGT 59.308 47.619 0.00 0.00 0.00 3.16
4203 5117 0.249699 ACACGATCCACAAGTTCGCA 60.250 50.000 0.00 0.00 40.62 5.10
4242 5156 5.471456 GGGATTCGAGAACATCTGCAAATAT 59.529 40.000 0.00 0.00 0.00 1.28
4245 5159 5.973651 TCGAGAACATCTGCAAATATGAC 57.026 39.130 9.62 4.64 0.00 3.06
4254 5168 3.059884 CTGCAAATATGACGCGTAGGAT 58.940 45.455 13.97 7.48 0.00 3.24
4258 5172 0.966179 ATATGACGCGTAGGATGCCA 59.034 50.000 13.97 3.92 0.00 4.92
4259 5173 0.031585 TATGACGCGTAGGATGCCAC 59.968 55.000 13.97 0.00 0.00 5.01
4283 5197 3.970721 CAGGCGTGCATGAACAGA 58.029 55.556 10.93 0.00 0.00 3.41
4302 5216 5.171476 ACAGAGTGATGTATTGTGCAGTAC 58.829 41.667 0.00 0.00 0.00 2.73
4303 5217 5.170748 CAGAGTGATGTATTGTGCAGTACA 58.829 41.667 9.40 9.40 37.79 2.90
4304 5218 8.689068 AACAGAGTGATGTATTGTGCAGTACAC 61.689 40.741 9.21 0.00 40.33 2.90
4594 6104 7.386573 CACCCTTTGTAACATTTCCAATTTACC 59.613 37.037 0.00 0.00 0.00 2.85
4737 6277 4.003788 CCAAGACGACGGGGTGCT 62.004 66.667 0.00 0.00 0.00 4.40
4749 6289 4.314440 GGTGCTGACCACGCCAGA 62.314 66.667 0.00 0.00 45.62 3.86
4768 6308 1.455849 CCAGACCTGGGTGAAAGCA 59.544 57.895 8.17 0.00 46.81 3.91
4798 6338 3.089838 CTGGAAGGGGGCATGTCA 58.910 61.111 0.00 0.00 0.00 3.58
4799 6339 1.077212 CTGGAAGGGGGCATGTCAG 60.077 63.158 0.00 0.00 0.00 3.51
4800 6340 2.276740 GGAAGGGGGCATGTCAGG 59.723 66.667 0.00 0.00 0.00 3.86
4801 6341 2.276740 GAAGGGGGCATGTCAGGG 59.723 66.667 0.00 0.00 0.00 4.45
4802 6342 2.535317 AAGGGGGCATGTCAGGGT 60.535 61.111 0.00 0.00 0.00 4.34
4803 6343 2.558380 GAAGGGGGCATGTCAGGGTC 62.558 65.000 0.00 0.00 0.00 4.46
4804 6344 3.338250 GGGGGCATGTCAGGGTCA 61.338 66.667 0.00 0.00 0.00 4.02
4805 6345 2.273449 GGGGCATGTCAGGGTCAG 59.727 66.667 0.00 0.00 0.00 3.51
4806 6346 2.273449 GGGCATGTCAGGGTCAGG 59.727 66.667 0.00 0.00 0.00 3.86
4807 6347 2.606587 GGGCATGTCAGGGTCAGGT 61.607 63.158 0.00 0.00 0.00 4.00
4808 6348 1.377725 GGCATGTCAGGGTCAGGTG 60.378 63.158 0.00 0.00 0.00 4.00
4822 6362 3.541713 GGTGGCGCCTCTCTAGGG 61.542 72.222 29.70 0.00 43.87 3.53
4886 6426 3.015145 AACTGGCGCATACCCCCT 61.015 61.111 10.83 0.00 0.00 4.79
4887 6427 1.691337 AACTGGCGCATACCCCCTA 60.691 57.895 10.83 0.00 0.00 3.53
4888 6428 1.979619 AACTGGCGCATACCCCCTAC 61.980 60.000 10.83 0.00 0.00 3.18
4889 6429 3.515316 CTGGCGCATACCCCCTACG 62.515 68.421 10.83 0.00 0.00 3.51
4890 6430 3.228759 GGCGCATACCCCCTACGA 61.229 66.667 10.83 0.00 0.00 3.43
4891 6431 2.338984 GCGCATACCCCCTACGAG 59.661 66.667 0.30 0.00 0.00 4.18
4892 6432 2.338984 CGCATACCCCCTACGAGC 59.661 66.667 0.00 0.00 0.00 5.03
4901 6441 4.208686 CCTACGAGCTGGGTCGGC 62.209 72.222 22.68 0.00 44.53 5.54
4902 6442 4.208686 CTACGAGCTGGGTCGGCC 62.209 72.222 22.68 0.00 44.53 6.13
4935 6475 2.116827 TCGGAAATGTTAACGCCCAT 57.883 45.000 0.26 0.00 0.00 4.00
5246 6790 7.395772 TGGCAATTTTAGTTTGTAGATCATGGA 59.604 33.333 0.00 0.00 0.00 3.41
5388 6932 4.767478 AGTCTAGTTTCTTAATTCCCCGC 58.233 43.478 0.00 0.00 0.00 6.13
5464 7009 7.340232 ACATATCATGGCAACTTCAGTGTAAAT 59.660 33.333 0.00 0.00 37.61 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.279784 GGCGCTGCTGCTACCTAG 60.280 66.667 14.03 0.00 36.97 3.02
2 3 4.154347 GAGGCGCTGCTGCTACCT 62.154 66.667 21.70 21.70 43.25 3.08
3 4 3.746949 ATGAGGCGCTGCTGCTACC 62.747 63.158 14.03 14.16 36.97 3.18
4 5 1.372087 AAATGAGGCGCTGCTGCTAC 61.372 55.000 14.03 6.17 36.97 3.58
6 7 0.677731 TAAAATGAGGCGCTGCTGCT 60.678 50.000 14.03 0.00 36.97 4.24
7 8 0.383231 ATAAAATGAGGCGCTGCTGC 59.617 50.000 7.64 5.34 0.00 5.25
9 10 1.312815 GGATAAAATGAGGCGCTGCT 58.687 50.000 7.64 0.00 0.00 4.24
10 11 1.002033 CTGGATAAAATGAGGCGCTGC 60.002 52.381 7.64 0.00 0.00 5.25
11 12 1.002033 GCTGGATAAAATGAGGCGCTG 60.002 52.381 7.64 0.00 0.00 5.18
12 13 1.312815 GCTGGATAAAATGAGGCGCT 58.687 50.000 7.64 0.00 0.00 5.92
13 14 0.040958 CGCTGGATAAAATGAGGCGC 60.041 55.000 0.00 0.00 35.13 6.53
14 15 0.040958 GCGCTGGATAAAATGAGGCG 60.041 55.000 0.00 0.00 43.21 5.52
15 16 1.312815 AGCGCTGGATAAAATGAGGC 58.687 50.000 10.39 0.00 0.00 4.70
16 17 3.496130 CAGTAGCGCTGGATAAAATGAGG 59.504 47.826 22.90 0.00 41.42 3.86
17 18 3.059325 GCAGTAGCGCTGGATAAAATGAG 60.059 47.826 22.90 0.00 45.14 2.90
18 19 2.872245 GCAGTAGCGCTGGATAAAATGA 59.128 45.455 22.90 0.00 45.14 2.57
19 20 3.259207 GCAGTAGCGCTGGATAAAATG 57.741 47.619 22.90 9.63 45.14 2.32
32 33 8.353684 TCTTATACACAGAATCTTAGCAGTAGC 58.646 37.037 0.00 0.00 42.56 3.58
46 47 9.710818 ACTACTAGGGAAAATCTTATACACAGA 57.289 33.333 0.00 0.00 0.00 3.41
47 48 9.751542 CACTACTAGGGAAAATCTTATACACAG 57.248 37.037 0.00 0.00 0.00 3.66
48 49 8.701895 CCACTACTAGGGAAAATCTTATACACA 58.298 37.037 0.00 0.00 0.00 3.72
65 66 1.499870 AGGCCCTAGTCCCACTACTAG 59.500 57.143 0.00 4.41 45.71 2.57
66 67 1.217183 CAGGCCCTAGTCCCACTACTA 59.783 57.143 0.00 0.00 0.00 1.82
67 68 0.032017 CAGGCCCTAGTCCCACTACT 60.032 60.000 0.00 0.00 0.00 2.57
68 69 0.325390 ACAGGCCCTAGTCCCACTAC 60.325 60.000 0.00 0.00 0.00 2.73
69 70 0.032416 GACAGGCCCTAGTCCCACTA 60.032 60.000 0.00 0.00 0.00 2.74
70 71 1.306226 GACAGGCCCTAGTCCCACT 60.306 63.158 0.00 0.00 0.00 4.00
71 72 1.612442 TGACAGGCCCTAGTCCCAC 60.612 63.158 15.55 0.00 33.89 4.61
72 73 1.612442 GTGACAGGCCCTAGTCCCA 60.612 63.158 15.55 0.00 33.89 4.37
83 84 0.035458 GGTCTTGGAGGTGTGACAGG 59.965 60.000 0.00 0.00 0.00 4.00
87 88 2.158219 TCTAAGGGTCTTGGAGGTGTGA 60.158 50.000 0.00 0.00 0.00 3.58
89 90 2.541466 CTCTAAGGGTCTTGGAGGTGT 58.459 52.381 11.58 0.00 0.00 4.16
122 123 1.068753 CGCAATCGCTGATCCTCCT 59.931 57.895 0.00 0.00 35.30 3.69
137 138 4.096003 GCCCCTCTAACCAGCGCA 62.096 66.667 11.47 0.00 0.00 6.09
141 142 1.450025 GTTTTCGCCCCTCTAACCAG 58.550 55.000 0.00 0.00 0.00 4.00
154 155 1.905637 AAAGGTGGCTAGGGTTTTCG 58.094 50.000 0.00 0.00 0.00 3.46
170 171 0.461961 CTCCTCCTCCACGCCTAAAG 59.538 60.000 0.00 0.00 0.00 1.85
173 174 2.279073 CCTCCTCCTCCACGCCTA 59.721 66.667 0.00 0.00 0.00 3.93
174 175 3.670629 CTCCTCCTCCTCCACGCCT 62.671 68.421 0.00 0.00 0.00 5.52
175 176 3.151022 CTCCTCCTCCTCCACGCC 61.151 72.222 0.00 0.00 0.00 5.68
176 177 2.043852 TCTCCTCCTCCTCCACGC 60.044 66.667 0.00 0.00 0.00 5.34
177 178 0.465460 CTCTCTCCTCCTCCTCCACG 60.465 65.000 0.00 0.00 0.00 4.94
178 179 0.106217 CCTCTCTCCTCCTCCTCCAC 60.106 65.000 0.00 0.00 0.00 4.02
179 180 1.292941 CCCTCTCTCCTCCTCCTCCA 61.293 65.000 0.00 0.00 0.00 3.86
181 182 1.541672 CCCCTCTCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
182 183 2.018086 CCCCCTCTCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
183 184 2.612251 CCCCCTCTCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
220 221 7.429636 TCCAATTTCCGTTTACTTTGTAGAG 57.570 36.000 0.00 0.00 0.00 2.43
226 227 8.032451 CCATATGTTCCAATTTCCGTTTACTTT 58.968 33.333 1.24 0.00 0.00 2.66
229 230 5.746721 GCCATATGTTCCAATTTCCGTTTAC 59.253 40.000 1.24 0.00 0.00 2.01
234 235 3.381272 ACTGCCATATGTTCCAATTTCCG 59.619 43.478 1.24 0.00 0.00 4.30
235 236 4.202151 GGACTGCCATATGTTCCAATTTCC 60.202 45.833 1.24 0.00 0.00 3.13
259 260 3.365472 GGCCTATCAAAGTCCAATTGGT 58.635 45.455 23.76 2.76 36.34 3.67
269 270 2.107950 TGTCAACCGGCCTATCAAAG 57.892 50.000 0.00 0.00 0.00 2.77
280 281 7.588143 TTAATTTTGCCAATAATGTCAACCG 57.412 32.000 0.00 0.00 0.00 4.44
318 319 4.186926 GAGATTGCAGATAAGCACTGTCA 58.813 43.478 0.00 0.00 45.61 3.58
331 332 5.106555 ACAAAATCGTACAAGGAGATTGCAG 60.107 40.000 0.00 0.00 43.15 4.41
344 345 8.928733 TCAATAGGTTGTAGAACAAAATCGTAC 58.071 33.333 5.00 0.00 40.15 3.67
347 348 9.840427 AATTCAATAGGTTGTAGAACAAAATCG 57.160 29.630 5.00 0.00 40.15 3.34
354 355 9.010029 TGGAAGAAATTCAATAGGTTGTAGAAC 57.990 33.333 0.00 0.00 36.69 3.01
360 361 7.829725 TGACATGGAAGAAATTCAATAGGTTG 58.170 34.615 0.00 0.00 36.65 3.77
367 368 7.287512 TGTTCATGACATGGAAGAAATTCAA 57.712 32.000 15.37 0.00 32.00 2.69
416 418 6.357198 CAAGCAAAATTCTTGTTCAAATCCG 58.643 36.000 0.00 0.00 36.93 4.18
421 423 5.115480 GGACCAAGCAAAATTCTTGTTCAA 58.885 37.500 5.63 0.00 39.30 2.69
455 457 4.497291 ACCATAAACATTTCTAGCGGGA 57.503 40.909 0.00 0.00 0.00 5.14
456 458 5.576447 AAACCATAAACATTTCTAGCGGG 57.424 39.130 0.00 0.00 0.00 6.13
459 461 8.382875 GCATTGAAAACCATAAACATTTCTAGC 58.617 33.333 0.00 0.00 0.00 3.42
461 463 9.770097 TTGCATTGAAAACCATAAACATTTCTA 57.230 25.926 0.00 0.00 0.00 2.10
473 475 6.481644 GTCACCTTTAATTGCATTGAAAACCA 59.518 34.615 0.00 0.00 0.00 3.67
475 477 6.419413 TCGTCACCTTTAATTGCATTGAAAAC 59.581 34.615 0.00 0.00 0.00 2.43
480 482 7.471721 TCTAATCGTCACCTTTAATTGCATTG 58.528 34.615 0.00 0.00 0.00 2.82
481 483 7.624360 TCTAATCGTCACCTTTAATTGCATT 57.376 32.000 0.00 0.00 0.00 3.56
482 484 7.201732 CCTTCTAATCGTCACCTTTAATTGCAT 60.202 37.037 0.00 0.00 0.00 3.96
483 485 6.093495 CCTTCTAATCGTCACCTTTAATTGCA 59.907 38.462 0.00 0.00 0.00 4.08
484 486 6.093633 ACCTTCTAATCGTCACCTTTAATTGC 59.906 38.462 0.00 0.00 0.00 3.56
485 487 7.464358 CACCTTCTAATCGTCACCTTTAATTG 58.536 38.462 0.00 0.00 0.00 2.32
599 602 7.014711 TGCAACTTATTACTTGTTTTGGGATGA 59.985 33.333 0.00 0.00 0.00 2.92
601 604 7.151976 GTGCAACTTATTACTTGTTTTGGGAT 58.848 34.615 0.00 0.00 0.00 3.85
670 673 7.530010 ACTCCATTCGTCTCAAAATAAATGTG 58.470 34.615 0.00 0.00 0.00 3.21
674 678 6.315393 GGCTACTCCATTCGTCTCAAAATAAA 59.685 38.462 0.00 0.00 34.01 1.40
683 687 3.983044 AAAAGGCTACTCCATTCGTCT 57.017 42.857 0.00 0.00 37.29 4.18
687 691 6.592994 AGTTACGTAAAAAGGCTACTCCATTC 59.407 38.462 10.11 0.00 37.29 2.67
688 692 6.470278 AGTTACGTAAAAAGGCTACTCCATT 58.530 36.000 10.11 0.00 37.29 3.16
690 694 5.473066 AGTTACGTAAAAAGGCTACTCCA 57.527 39.130 10.11 0.00 37.29 3.86
697 701 8.422457 GCAAATCTTAAAGTTACGTAAAAAGGC 58.578 33.333 10.11 6.82 0.00 4.35
698 702 8.624028 CGCAAATCTTAAAGTTACGTAAAAAGG 58.376 33.333 10.11 0.00 0.00 3.11
699 703 8.145312 GCGCAAATCTTAAAGTTACGTAAAAAG 58.855 33.333 10.11 11.15 0.00 2.27
707 714 6.986424 AGTTTGCGCAAATCTTAAAGTTAC 57.014 33.333 35.53 19.93 32.36 2.50
723 730 5.005203 TCAATGCACTGTTTAAAAGTTTGCG 59.995 36.000 0.00 0.00 0.00 4.85
736 743 3.806625 AGTTTTGCTTCAATGCACTGT 57.193 38.095 0.00 0.00 43.20 3.55
737 744 6.413269 GTTAAAGTTTTGCTTCAATGCACTG 58.587 36.000 0.00 0.00 43.20 3.66
738 745 5.231991 CGTTAAAGTTTTGCTTCAATGCACT 59.768 36.000 0.00 0.00 43.20 4.40
742 749 5.005203 TGCACGTTAAAGTTTTGCTTCAATG 59.995 36.000 10.48 0.00 36.17 2.82
744 751 4.486090 TGCACGTTAAAGTTTTGCTTCAA 58.514 34.783 10.48 0.00 36.17 2.69
745 752 4.098055 TGCACGTTAAAGTTTTGCTTCA 57.902 36.364 10.48 0.00 36.17 3.02
747 754 4.867608 ACAATGCACGTTAAAGTTTTGCTT 59.132 33.333 10.48 2.95 39.52 3.91
796 804 9.066892 ACCTATCAATCATACAAAATGCGTTAT 57.933 29.630 0.00 0.00 0.00 1.89
798 806 7.195646 CACCTATCAATCATACAAAATGCGTT 58.804 34.615 0.00 0.00 0.00 4.84
799 807 6.238731 CCACCTATCAATCATACAAAATGCGT 60.239 38.462 0.00 0.00 0.00 5.24
800 808 6.144854 CCACCTATCAATCATACAAAATGCG 58.855 40.000 0.00 0.00 0.00 4.73
801 809 6.040842 ACCCACCTATCAATCATACAAAATGC 59.959 38.462 0.00 0.00 0.00 3.56
836 844 6.431198 AATTGAACAGTACGTTTGACAACT 57.569 33.333 0.00 0.00 38.19 3.16
845 853 6.740905 CGATGCAAAATAATTGAACAGTACGT 59.259 34.615 0.00 0.00 0.00 3.57
861 869 1.082431 CGACAACGCCGATGCAAAA 60.082 52.632 0.00 0.00 37.32 2.44
873 881 3.252974 AGAATGAGATCACCCGACAAC 57.747 47.619 0.00 0.00 0.00 3.32
881 889 4.747108 CCAACGACCATAGAATGAGATCAC 59.253 45.833 0.00 0.00 0.00 3.06
882 890 4.649218 TCCAACGACCATAGAATGAGATCA 59.351 41.667 0.00 0.00 0.00 2.92
912 923 1.722011 AATTACTTCCTGTGGCGACG 58.278 50.000 0.00 0.00 0.00 5.12
928 939 5.607171 AGAGGACGGGTGGAGATTATTAATT 59.393 40.000 0.00 0.00 0.00 1.40
929 940 5.155905 AGAGGACGGGTGGAGATTATTAAT 58.844 41.667 0.00 0.00 0.00 1.40
963 975 3.052082 GCTGCAAGAGCCGCTGAA 61.052 61.111 0.00 0.00 46.03 3.02
1014 1152 2.124151 CCCCTCCCCTGCAAATCG 60.124 66.667 0.00 0.00 0.00 3.34
1178 1331 2.527624 ACTCTGCCACAGGGAGCA 60.528 61.111 0.53 0.00 41.08 4.26
1278 1450 8.746922 ACAGCTTAATTTGTTGATATGTGTTG 57.253 30.769 0.00 0.00 0.00 3.33
1402 1582 2.337583 TCAGTTAACTGCGACTCATGC 58.662 47.619 27.49 0.00 43.46 4.06
1413 1593 8.725148 CAAATTAGCAACTCATCTCAGTTAACT 58.275 33.333 1.12 1.12 34.70 2.24
1428 1608 6.749118 CAGATAAGAAGCACCAAATTAGCAAC 59.251 38.462 0.00 0.00 0.00 4.17
1429 1609 6.434028 ACAGATAAGAAGCACCAAATTAGCAA 59.566 34.615 0.00 0.00 0.00 3.91
1443 1625 9.685828 GCTACATAGAAAGGTACAGATAAGAAG 57.314 37.037 0.00 0.00 0.00 2.85
1492 1674 1.202114 CCAATGAATGACCCCAACACG 59.798 52.381 0.00 0.00 0.00 4.49
1555 1737 1.303236 CGGCACAAAGATCCCACCA 60.303 57.895 0.00 0.00 0.00 4.17
1567 1749 3.321648 AGGGTCAGCATCGGCACA 61.322 61.111 0.00 0.00 44.61 4.57
1646 1828 6.793349 AGTAGACGAAAATTATAGCACGAGT 58.207 36.000 0.00 0.00 0.00 4.18
1647 1829 6.910972 TGAGTAGACGAAAATTATAGCACGAG 59.089 38.462 0.00 0.00 0.00 4.18
1650 1832 8.804688 ATCTGAGTAGACGAAAATTATAGCAC 57.195 34.615 0.00 0.00 35.34 4.40
1657 1843 6.992063 ATGCAATCTGAGTAGACGAAAATT 57.008 33.333 0.00 0.00 35.34 1.82
1663 1849 5.344066 ACAGTAATGCAATCTGAGTAGACG 58.656 41.667 18.34 0.00 35.34 4.18
1664 1850 7.038659 AGAACAGTAATGCAATCTGAGTAGAC 58.961 38.462 18.34 0.00 35.34 2.59
1666 1852 7.840342 AAGAACAGTAATGCAATCTGAGTAG 57.160 36.000 18.34 0.00 33.93 2.57
1668 1854 8.798859 ATAAAGAACAGTAATGCAATCTGAGT 57.201 30.769 18.34 8.91 33.93 3.41
1669 1855 9.107177 AGATAAAGAACAGTAATGCAATCTGAG 57.893 33.333 18.34 0.00 33.93 3.35
1705 1894 8.005192 TGTATGCCTTCATGCAAATAATACAA 57.995 30.769 0.00 0.00 45.84 2.41
1724 1914 8.656849 CCAAATTACTCGGTAAGATATGTATGC 58.343 37.037 3.49 0.00 31.29 3.14
1726 1916 9.706691 CACCAAATTACTCGGTAAGATATGTAT 57.293 33.333 3.49 0.00 31.29 2.29
1739 1929 7.210174 TCCAGATATCTTCACCAAATTACTCG 58.790 38.462 1.33 0.00 0.00 4.18
1743 1933 8.324191 AGACTCCAGATATCTTCACCAAATTA 57.676 34.615 1.33 0.00 0.00 1.40
1753 1943 6.149616 AGAAATGGGAGACTCCAGATATCTT 58.850 40.000 23.06 5.97 40.56 2.40
1755 1945 6.432403 AAGAAATGGGAGACTCCAGATATC 57.568 41.667 23.06 13.20 40.56 1.63
1768 1958 2.593026 AGCAAACGGAAAGAAATGGGA 58.407 42.857 0.00 0.00 0.00 4.37
1769 1959 4.718940 ATAGCAAACGGAAAGAAATGGG 57.281 40.909 0.00 0.00 0.00 4.00
1770 1960 6.189677 TGTATAGCAAACGGAAAGAAATGG 57.810 37.500 0.00 0.00 0.00 3.16
1778 1968 5.119694 TGTATGCATGTATAGCAAACGGAA 58.880 37.500 10.16 0.00 46.27 4.30
1779 1969 4.698575 TGTATGCATGTATAGCAAACGGA 58.301 39.130 10.16 0.00 46.27 4.69
1780 1970 5.384787 CATGTATGCATGTATAGCAAACGG 58.615 41.667 14.98 0.00 46.27 4.44
1814 2081 7.325660 AGTTTAGAATGTCATAATGTGCAGG 57.674 36.000 0.00 0.00 0.00 4.85
1827 2094 9.066892 TGATTGTTTGAAGCTAGTTTAGAATGT 57.933 29.630 0.00 0.00 0.00 2.71
1830 2097 9.120538 ACTTGATTGTTTGAAGCTAGTTTAGAA 57.879 29.630 0.00 0.00 0.00 2.10
1923 2295 7.424803 TGACATGTACCTTGAACTTGAATTTG 58.575 34.615 0.00 0.00 0.00 2.32
1926 2298 7.581213 TTTGACATGTACCTTGAACTTGAAT 57.419 32.000 0.00 0.00 0.00 2.57
1929 2301 6.738114 ACATTTGACATGTACCTTGAACTTG 58.262 36.000 0.00 0.00 0.00 3.16
1934 2306 5.815222 CGGATACATTTGACATGTACCTTGA 59.185 40.000 0.00 0.00 37.33 3.02
1945 2317 7.429340 GTGTTCAATCAATCGGATACATTTGAC 59.571 37.037 0.00 0.00 39.18 3.18
1956 2328 4.355543 AAATCCGTGTTCAATCAATCGG 57.644 40.909 0.00 0.00 36.38 4.18
1958 2330 7.308435 AGAGAAAAATCCGTGTTCAATCAATC 58.692 34.615 0.00 0.00 0.00 2.67
2006 2395 3.880047 ACGTTCTCCCGTGATGAATTA 57.120 42.857 0.00 0.00 40.08 1.40
2018 2407 6.555812 AAAACTTCCAAAGATACGTTCTCC 57.444 37.500 0.00 0.00 31.78 3.71
2038 2427 9.631257 TCAGAATCAATCATGAGCCTAATAAAA 57.369 29.630 0.09 0.00 39.39 1.52
2048 2492 7.266400 TCTCAGTTCTCAGAATCAATCATGAG 58.734 38.462 0.09 0.00 39.39 2.90
2058 2502 8.359642 GCAGAGTATTATCTCAGTTCTCAGAAT 58.640 37.037 0.00 0.00 36.97 2.40
2072 2518 6.346477 TCATACCTGTGGCAGAGTATTATC 57.654 41.667 11.04 0.00 30.97 1.75
2074 2520 5.838521 TGATCATACCTGTGGCAGAGTATTA 59.161 40.000 11.04 0.00 30.97 0.98
2075 2521 4.655649 TGATCATACCTGTGGCAGAGTATT 59.344 41.667 11.04 0.00 30.97 1.89
2076 2522 4.226384 TGATCATACCTGTGGCAGAGTAT 58.774 43.478 11.04 4.70 32.37 2.12
2148 2594 1.825090 TCACTGGCATGTCCAATGTC 58.175 50.000 14.38 0.00 46.01 3.06
2181 2627 1.149401 GGGCTGAATGAGTAGGGCC 59.851 63.158 0.00 0.00 38.92 5.80
2309 2755 2.483583 TTAACGGTTGCTGCAGTTTG 57.516 45.000 16.64 3.90 0.00 2.93
2335 2781 4.093408 TGAAGTCAGCTACGAATTCATTGC 59.907 41.667 11.56 2.76 43.02 3.56
2342 2791 5.003804 ACCATTTTGAAGTCAGCTACGAAT 58.996 37.500 0.00 0.00 0.00 3.34
2344 2793 4.002906 ACCATTTTGAAGTCAGCTACGA 57.997 40.909 0.00 0.00 0.00 3.43
2345 2794 4.749245 AACCATTTTGAAGTCAGCTACG 57.251 40.909 0.00 0.00 0.00 3.51
2359 2808 9.639563 AACTGGAATTTAATTTGGAAACCATTT 57.360 25.926 0.00 0.00 31.53 2.32
2394 2843 3.722728 ACAGCCTTCAGAAAAGCTTTG 57.277 42.857 13.54 0.69 29.50 2.77
2415 2864 5.215252 TCGTCTCTTTCTTCCATGTTTCT 57.785 39.130 0.00 0.00 0.00 2.52
2520 2977 6.072728 CCTGAATGAATAACCAAACGAAGTGA 60.073 38.462 0.00 0.00 45.00 3.41
2523 2980 6.371548 TCTCCTGAATGAATAACCAAACGAAG 59.628 38.462 0.00 0.00 0.00 3.79
2527 2993 6.623767 GCTGTCTCCTGAATGAATAACCAAAC 60.624 42.308 0.00 0.00 0.00 2.93
2563 3029 8.487176 GTTTATTGGTCAATTACTTGTTTGCTG 58.513 33.333 1.28 0.00 33.87 4.41
2577 3043 8.961634 TGATGAATAATTCGGTTTATTGGTCAA 58.038 29.630 7.83 0.00 33.11 3.18
2633 3099 5.296780 CGCGGCATTATATCCCATAGAAAAT 59.703 40.000 0.00 0.00 0.00 1.82
2640 3106 1.555075 AGACGCGGCATTATATCCCAT 59.445 47.619 17.71 0.00 0.00 4.00
2657 3123 4.098055 TGTTCTTCGTCTGCAGATAGAC 57.902 45.455 21.47 15.70 42.83 2.59
2658 3124 3.129462 CCTGTTCTTCGTCTGCAGATAGA 59.871 47.826 21.47 19.06 0.00 1.98
2669 3135 2.413837 GCATGTACACCTGTTCTTCGT 58.586 47.619 0.00 0.00 0.00 3.85
2670 3136 1.732259 GGCATGTACACCTGTTCTTCG 59.268 52.381 0.00 0.00 0.00 3.79
2681 3147 1.741401 GCAGACAGCGGCATGTACA 60.741 57.895 1.45 0.00 35.17 2.90
2740 3206 6.097270 TCTGATGGGGTTTCATTTTGATCATC 59.903 38.462 0.00 0.00 0.00 2.92
3239 3722 8.916654 CAGATGTTACTGTCGATATTACCAATC 58.083 37.037 0.00 0.00 33.73 2.67
3241 3724 7.207383 CCAGATGTTACTGTCGATATTACCAA 58.793 38.462 0.00 0.00 36.30 3.67
3356 4253 6.743110 TGATTGAATACCGAGATGAAGAGAG 58.257 40.000 0.00 0.00 0.00 3.20
3358 4255 6.073873 GCTTGATTGAATACCGAGATGAAGAG 60.074 42.308 0.00 0.00 0.00 2.85
3365 4262 2.201732 GCGCTTGATTGAATACCGAGA 58.798 47.619 0.00 0.00 0.00 4.04
3378 4275 4.157472 TGGATCAATTTTGTATGCGCTTGA 59.843 37.500 9.73 8.00 0.00 3.02
3379 4276 4.422840 TGGATCAATTTTGTATGCGCTTG 58.577 39.130 9.73 1.69 0.00 4.01
3395 4293 8.052141 TCCAACATGTAAATGAACTATGGATCA 58.948 33.333 0.00 0.00 0.00 2.92
3509 4407 1.550524 TCAGGCTGTTATGCTCGTTCT 59.449 47.619 15.27 0.00 0.00 3.01
3513 4411 1.850377 CTCTCAGGCTGTTATGCTCG 58.150 55.000 15.27 0.00 0.00 5.03
3519 4417 2.429971 CTGATGAGCTCTCAGGCTGTTA 59.570 50.000 24.27 2.85 43.61 2.41
3731 4630 0.320771 ACAGACAGGTCGAATGTGCC 60.321 55.000 9.12 0.00 34.09 5.01
3862 4775 6.881067 TGGGAGGATATATCAGAGGAAATG 57.119 41.667 14.60 0.00 0.00 2.32
3867 4780 8.739108 ATAATCATGGGAGGATATATCAGAGG 57.261 38.462 14.60 0.00 0.00 3.69
3956 4869 1.913403 CCAATGATCGCAGCGAAAAAC 59.087 47.619 23.76 13.77 39.99 2.43
3972 4885 0.038744 CTCACAACCCTCTGGCCAAT 59.961 55.000 7.01 0.00 33.59 3.16
3974 4887 2.528818 CCTCACAACCCTCTGGCCA 61.529 63.158 4.71 4.71 33.59 5.36
4064 4977 4.570292 GGAAACCTGGTACCTAGAGAGAGT 60.570 50.000 14.36 0.00 0.00 3.24
4198 5112 0.108377 ATGTACTCATGCCGTGCGAA 60.108 50.000 0.00 0.00 32.51 4.70
4242 5156 2.183300 GTGGCATCCTACGCGTCA 59.817 61.111 18.63 1.78 0.00 4.35
4245 5159 3.264897 GCTGTGGCATCCTACGCG 61.265 66.667 3.53 3.53 38.54 6.01
4266 5180 0.952497 ACTCTGTTCATGCACGCCTG 60.952 55.000 0.00 0.00 0.00 4.85
4267 5181 0.952497 CACTCTGTTCATGCACGCCT 60.952 55.000 0.00 0.00 0.00 5.52
4302 5216 4.261741 CCTTGACATTTCCAAAGTCCAGTG 60.262 45.833 0.00 0.00 0.00 3.66
4303 5217 3.891366 CCTTGACATTTCCAAAGTCCAGT 59.109 43.478 0.00 0.00 0.00 4.00
4304 5218 3.891366 ACCTTGACATTTCCAAAGTCCAG 59.109 43.478 0.00 0.00 0.00 3.86
4402 5317 9.973450 TTAGCTCTTACAATTTGCAATTTACAA 57.027 25.926 0.00 0.23 0.00 2.41
4465 5386 3.696548 GAGAAGGGGGCAAGATTAAACTG 59.303 47.826 0.00 0.00 0.00 3.16
4520 5443 9.979578 ACATAGCAATCACAATGAACTTTTTAA 57.020 25.926 0.00 0.00 0.00 1.52
4521 5444 9.624697 GACATAGCAATCACAATGAACTTTTTA 57.375 29.630 0.00 0.00 0.00 1.52
4524 5447 7.458409 AGACATAGCAATCACAATGAACTTT 57.542 32.000 0.00 0.00 0.00 2.66
4526 6035 8.565896 TTTAGACATAGCAATCACAATGAACT 57.434 30.769 0.00 0.00 0.00 3.01
4613 6123 4.898861 TGCTAAACAATCCCCTGAAAAAGT 59.101 37.500 0.00 0.00 0.00 2.66
4620 6130 4.280677 TGTTTTCTGCTAAACAATCCCCTG 59.719 41.667 9.03 0.00 43.07 4.45
4695 6235 8.966868 GGGATCCATAAATAGTTGAGTTTTTCA 58.033 33.333 15.23 0.00 0.00 2.69
4737 6277 2.523168 TCTGGTCTGGCGTGGTCA 60.523 61.111 0.00 0.00 0.00 4.02
4768 6308 0.038744 CTTCCAGGTCAAGCCCATGT 59.961 55.000 0.00 0.00 38.26 3.21
4805 6345 3.541713 CCCTAGAGAGGCGCCACC 61.542 72.222 31.54 20.10 42.21 4.61
4806 6346 4.228567 GCCCTAGAGAGGCGCCAC 62.229 72.222 31.54 24.27 42.21 5.01
4822 6362 3.334272 AAAGCGCCGTATAGAAAATGC 57.666 42.857 2.29 0.00 0.00 3.56
4959 6499 4.250305 GGTGGTGGAGGCGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
5064 6604 5.296283 TGGTGAAAACGGATTTTTAGTTCGA 59.704 36.000 0.00 0.00 38.17 3.71
5320 6864 2.291465 GCCATGATACATGCACGTCAAT 59.709 45.455 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.