Multiple sequence alignment - TraesCS7B01G020700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G020700 chr7B 100.000 4302 0 0 1 4302 18205139 18209440 0.000000e+00 7945
1 TraesCS7B01G020700 chr7B 91.071 336 29 1 2864 3199 18449161 18449495 1.820000e-123 453
2 TraesCS7B01G020700 chr7D 96.928 2018 50 6 2292 4299 74599352 74601367 0.000000e+00 3373
3 TraesCS7B01G020700 chr7D 90.843 1780 105 31 445 2180 74597472 74599237 0.000000e+00 2331
4 TraesCS7B01G020700 chr7D 86.580 231 17 6 3069 3299 74867040 74867256 4.300000e-60 243
5 TraesCS7B01G020700 chr7D 96.907 97 3 0 2178 2274 74599270 74599366 3.440000e-36 163
6 TraesCS7B01G020700 chr7A 94.381 2029 81 17 2292 4302 78510567 78512580 0.000000e+00 3085
7 TraesCS7B01G020700 chr7A 91.790 1754 96 24 451 2180 78508723 78510452 0.000000e+00 2398
8 TraesCS7B01G020700 chr7A 79.808 624 63 32 3075 3652 78564791 78565397 3.120000e-106 396
9 TraesCS7B01G020700 chr1D 84.730 943 116 22 2371 3301 455115014 455115940 0.000000e+00 918
10 TraesCS7B01G020700 chr1D 77.297 947 154 33 751 1670 455113487 455114399 6.420000e-138 501
11 TraesCS7B01G020700 chr1B 85.751 772 96 8 2508 3275 625809566 625810327 0.000000e+00 804
12 TraesCS7B01G020700 chr1B 76.997 939 164 33 751 1679 625808671 625809567 1.390000e-134 490
13 TraesCS7B01G020700 chr1B 91.096 146 12 1 1527 1671 625777361 625777506 3.390000e-46 196
14 TraesCS7B01G020700 chr4B 99.709 344 1 0 1 344 189984022 189984365 7.850000e-177 630
15 TraesCS7B01G020700 chr5B 96.522 345 9 3 2 346 262430988 262430647 6.240000e-158 568
16 TraesCS7B01G020700 chr5B 94.618 353 11 3 1 347 439451405 439451755 1.360000e-149 540
17 TraesCS7B01G020700 chr1A 79.076 736 110 24 983 1691 549047589 549048307 2.340000e-127 466
18 TraesCS7B01G020700 chr1A 84.804 408 46 14 2371 2768 549048869 549049270 3.120000e-106 396
19 TraesCS7B01G020700 chr1A 84.772 394 53 5 2763 3155 549054072 549054459 5.220000e-104 388
20 TraesCS7B01G020700 chr1A 86.744 347 17 7 1 339 95835105 95835430 4.090000e-95 359
21 TraesCS7B01G020700 chr1A 73.695 498 99 22 3110 3589 549054443 549054926 9.570000e-37 165
22 TraesCS7B01G020700 chr2D 89.577 355 23 6 1 346 131387201 131386852 5.110000e-119 438


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G020700 chr7B 18205139 18209440 4301 False 7945.000000 7945 100.000000 1 4302 1 chr7B.!!$F1 4301
1 TraesCS7B01G020700 chr7D 74597472 74601367 3895 False 1955.666667 3373 94.892667 445 4299 3 chr7D.!!$F2 3854
2 TraesCS7B01G020700 chr7A 78508723 78512580 3857 False 2741.500000 3085 93.085500 451 4302 2 chr7A.!!$F2 3851
3 TraesCS7B01G020700 chr7A 78564791 78565397 606 False 396.000000 396 79.808000 3075 3652 1 chr7A.!!$F1 577
4 TraesCS7B01G020700 chr1D 455113487 455115940 2453 False 709.500000 918 81.013500 751 3301 2 chr1D.!!$F1 2550
5 TraesCS7B01G020700 chr1B 625808671 625810327 1656 False 647.000000 804 81.374000 751 3275 2 chr1B.!!$F2 2524
6 TraesCS7B01G020700 chr1A 549047589 549049270 1681 False 431.000000 466 81.940000 983 2768 2 chr1A.!!$F2 1785
7 TraesCS7B01G020700 chr1A 549054072 549054926 854 False 276.500000 388 79.233500 2763 3589 2 chr1A.!!$F3 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.031449 GGTAGAGGAGATGCACGAGC 59.969 60.0 0.00 0.0 42.57 5.03 F
398 399 0.032540 CCACAGCCAGAACAAAAGCC 59.967 55.0 0.00 0.0 0.00 4.35 F
1209 1249 0.326264 AAGCTGTCATCAGTGGGGAC 59.674 55.0 7.80 7.8 43.05 4.46 F
1477 1546 1.361668 CTCTGTTTGCGGCGCTGTAT 61.362 55.0 33.26 0.0 0.00 2.29 F
2123 2559 1.884456 TTGATGGGTGGGGAATGGGG 61.884 60.0 0.00 0.0 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1246 1298 0.819259 TTTGGTGTCAGCAGAGGCAC 60.819 55.000 4.68 0.58 44.61 5.01 R
1502 1573 1.324736 GCAAGGACGAGCTTAACATCG 59.675 52.381 0.00 3.61 44.36 3.84 R
2751 3233 1.004745 GCAGAAGGGTCCCAGATTTGA 59.995 52.381 11.55 0.00 0.00 2.69 R
3207 3719 1.479323 GACCTACCGCTGTCACCAATA 59.521 52.381 0.00 0.00 0.00 1.90 R
3904 4470 3.243569 CCGGAGTTCAGATGTCCTATGTC 60.244 52.174 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.212797 CACCGGTGGGGGTTGGTT 62.213 66.667 27.57 0.00 38.56 3.67
30 31 3.431415 ACCGGTGGGGGTTGGTTT 61.431 61.111 6.12 0.00 41.60 3.27
31 32 2.915137 CCGGTGGGGGTTGGTTTG 60.915 66.667 0.00 0.00 0.00 2.93
32 33 3.611674 CGGTGGGGGTTGGTTTGC 61.612 66.667 0.00 0.00 0.00 3.68
33 34 2.444895 GGTGGGGGTTGGTTTGCA 60.445 61.111 0.00 0.00 0.00 4.08
34 35 2.506957 GGTGGGGGTTGGTTTGCAG 61.507 63.158 0.00 0.00 0.00 4.41
35 36 2.841988 TGGGGGTTGGTTTGCAGC 60.842 61.111 0.00 0.00 0.00 5.25
36 37 3.989787 GGGGGTTGGTTTGCAGCG 61.990 66.667 0.00 0.00 0.00 5.18
37 38 4.662961 GGGGTTGGTTTGCAGCGC 62.663 66.667 0.00 0.00 0.00 5.92
38 39 3.605664 GGGTTGGTTTGCAGCGCT 61.606 61.111 2.64 2.64 0.00 5.92
39 40 2.355009 GGTTGGTTTGCAGCGCTG 60.355 61.111 32.83 32.83 0.00 5.18
40 41 2.355009 GTTGGTTTGCAGCGCTGG 60.355 61.111 36.47 19.58 0.00 4.85
41 42 2.832661 TTGGTTTGCAGCGCTGGT 60.833 55.556 36.47 0.00 0.00 4.00
42 43 2.844451 TTGGTTTGCAGCGCTGGTC 61.844 57.895 36.47 22.29 0.00 4.02
43 44 4.389576 GGTTTGCAGCGCTGGTCG 62.390 66.667 36.47 14.02 42.12 4.79
158 159 2.200067 CGCAAGCATCTACAAGAGAGG 58.800 52.381 0.00 0.00 37.70 3.69
159 160 2.159184 CGCAAGCATCTACAAGAGAGGA 60.159 50.000 0.00 0.00 38.28 3.71
160 161 3.677148 CGCAAGCATCTACAAGAGAGGAA 60.677 47.826 0.00 0.00 38.28 3.36
161 162 3.870419 GCAAGCATCTACAAGAGAGGAAG 59.130 47.826 0.00 0.00 38.28 3.46
162 163 4.382470 GCAAGCATCTACAAGAGAGGAAGA 60.382 45.833 0.00 0.00 38.28 2.87
163 164 5.728471 CAAGCATCTACAAGAGAGGAAGAA 58.272 41.667 0.00 0.00 38.28 2.52
164 165 6.169094 CAAGCATCTACAAGAGAGGAAGAAA 58.831 40.000 0.00 0.00 38.28 2.52
165 166 6.365970 AGCATCTACAAGAGAGGAAGAAAA 57.634 37.500 0.00 0.00 38.28 2.29
166 167 6.405538 AGCATCTACAAGAGAGGAAGAAAAG 58.594 40.000 0.00 0.00 38.28 2.27
167 168 6.212388 AGCATCTACAAGAGAGGAAGAAAAGA 59.788 38.462 0.00 0.00 38.28 2.52
168 169 6.534793 GCATCTACAAGAGAGGAAGAAAAGAG 59.465 42.308 0.00 0.00 38.28 2.85
169 170 6.597832 TCTACAAGAGAGGAAGAAAAGAGG 57.402 41.667 0.00 0.00 0.00 3.69
170 171 4.014569 ACAAGAGAGGAAGAAAAGAGGC 57.985 45.455 0.00 0.00 0.00 4.70
171 172 2.999355 CAAGAGAGGAAGAAAAGAGGCG 59.001 50.000 0.00 0.00 0.00 5.52
172 173 2.530701 AGAGAGGAAGAAAAGAGGCGA 58.469 47.619 0.00 0.00 0.00 5.54
173 174 2.495669 AGAGAGGAAGAAAAGAGGCGAG 59.504 50.000 0.00 0.00 0.00 5.03
174 175 1.066502 AGAGGAAGAAAAGAGGCGAGC 60.067 52.381 0.00 0.00 0.00 5.03
175 176 0.390472 AGGAAGAAAAGAGGCGAGCG 60.390 55.000 0.00 0.00 0.00 5.03
176 177 1.362406 GGAAGAAAAGAGGCGAGCGG 61.362 60.000 0.00 0.00 0.00 5.52
177 178 0.389948 GAAGAAAAGAGGCGAGCGGA 60.390 55.000 0.00 0.00 0.00 5.54
178 179 0.390472 AAGAAAAGAGGCGAGCGGAG 60.390 55.000 0.00 0.00 0.00 4.63
179 180 1.811679 GAAAAGAGGCGAGCGGAGG 60.812 63.158 0.00 0.00 0.00 4.30
180 181 2.227089 GAAAAGAGGCGAGCGGAGGA 62.227 60.000 0.00 0.00 0.00 3.71
181 182 2.232298 AAAAGAGGCGAGCGGAGGAG 62.232 60.000 0.00 0.00 0.00 3.69
185 186 4.821589 GGCGAGCGGAGGAGGTTG 62.822 72.222 0.00 0.00 0.00 3.77
188 189 4.821589 GAGCGGAGGAGGTTGCGG 62.822 72.222 0.00 0.00 32.14 5.69
190 191 3.766691 GCGGAGGAGGTTGCGGTA 61.767 66.667 0.00 0.00 32.14 4.02
191 192 2.494918 CGGAGGAGGTTGCGGTAG 59.505 66.667 0.00 0.00 0.00 3.18
192 193 2.050350 CGGAGGAGGTTGCGGTAGA 61.050 63.158 0.00 0.00 0.00 2.59
193 194 1.817209 GGAGGAGGTTGCGGTAGAG 59.183 63.158 0.00 0.00 0.00 2.43
194 195 1.677637 GGAGGAGGTTGCGGTAGAGG 61.678 65.000 0.00 0.00 0.00 3.69
195 196 0.683504 GAGGAGGTTGCGGTAGAGGA 60.684 60.000 0.00 0.00 0.00 3.71
196 197 0.684805 AGGAGGTTGCGGTAGAGGAG 60.685 60.000 0.00 0.00 0.00 3.69
197 198 0.683504 GGAGGTTGCGGTAGAGGAGA 60.684 60.000 0.00 0.00 0.00 3.71
198 199 1.404843 GAGGTTGCGGTAGAGGAGAT 58.595 55.000 0.00 0.00 0.00 2.75
199 200 1.067821 GAGGTTGCGGTAGAGGAGATG 59.932 57.143 0.00 0.00 0.00 2.90
200 201 0.530870 GGTTGCGGTAGAGGAGATGC 60.531 60.000 0.00 0.00 0.00 3.91
201 202 0.175760 GTTGCGGTAGAGGAGATGCA 59.824 55.000 0.00 0.00 0.00 3.96
202 203 0.175760 TTGCGGTAGAGGAGATGCAC 59.824 55.000 0.00 0.00 31.16 4.57
203 204 1.299468 GCGGTAGAGGAGATGCACG 60.299 63.158 0.00 0.00 0.00 5.34
204 205 1.725557 GCGGTAGAGGAGATGCACGA 61.726 60.000 0.00 0.00 0.00 4.35
205 206 0.309302 CGGTAGAGGAGATGCACGAG 59.691 60.000 0.00 0.00 0.00 4.18
206 207 0.031449 GGTAGAGGAGATGCACGAGC 59.969 60.000 0.00 0.00 42.57 5.03
218 219 2.977405 GCACGAGCAAAAGAATGAGT 57.023 45.000 0.00 0.00 41.58 3.41
219 220 2.578495 GCACGAGCAAAAGAATGAGTG 58.422 47.619 0.00 0.00 41.58 3.51
220 221 2.666619 GCACGAGCAAAAGAATGAGTGG 60.667 50.000 0.00 0.00 41.58 4.00
221 222 2.807967 CACGAGCAAAAGAATGAGTGGA 59.192 45.455 0.00 0.00 0.00 4.02
222 223 3.438087 CACGAGCAAAAGAATGAGTGGAT 59.562 43.478 0.00 0.00 0.00 3.41
223 224 3.438087 ACGAGCAAAAGAATGAGTGGATG 59.562 43.478 0.00 0.00 0.00 3.51
224 225 3.181503 CGAGCAAAAGAATGAGTGGATGG 60.182 47.826 0.00 0.00 0.00 3.51
225 226 3.760684 GAGCAAAAGAATGAGTGGATGGT 59.239 43.478 0.00 0.00 0.00 3.55
226 227 3.508793 AGCAAAAGAATGAGTGGATGGTG 59.491 43.478 0.00 0.00 0.00 4.17
227 228 3.256631 GCAAAAGAATGAGTGGATGGTGT 59.743 43.478 0.00 0.00 0.00 4.16
228 229 4.262164 GCAAAAGAATGAGTGGATGGTGTT 60.262 41.667 0.00 0.00 0.00 3.32
229 230 5.224888 CAAAAGAATGAGTGGATGGTGTTG 58.775 41.667 0.00 0.00 0.00 3.33
230 231 3.795688 AGAATGAGTGGATGGTGTTGT 57.204 42.857 0.00 0.00 0.00 3.32
231 232 4.104383 AGAATGAGTGGATGGTGTTGTT 57.896 40.909 0.00 0.00 0.00 2.83
232 233 4.074970 AGAATGAGTGGATGGTGTTGTTC 58.925 43.478 0.00 0.00 0.00 3.18
233 234 2.270352 TGAGTGGATGGTGTTGTTCC 57.730 50.000 0.00 0.00 0.00 3.62
234 235 1.774254 TGAGTGGATGGTGTTGTTCCT 59.226 47.619 0.00 0.00 0.00 3.36
235 236 2.154462 GAGTGGATGGTGTTGTTCCTG 58.846 52.381 0.00 0.00 0.00 3.86
236 237 1.774254 AGTGGATGGTGTTGTTCCTGA 59.226 47.619 0.00 0.00 0.00 3.86
237 238 2.174639 AGTGGATGGTGTTGTTCCTGAA 59.825 45.455 0.00 0.00 0.00 3.02
238 239 2.554032 GTGGATGGTGTTGTTCCTGAAG 59.446 50.000 0.00 0.00 0.00 3.02
239 240 2.441375 TGGATGGTGTTGTTCCTGAAGA 59.559 45.455 0.00 0.00 0.00 2.87
240 241 3.077359 GGATGGTGTTGTTCCTGAAGAG 58.923 50.000 0.00 0.00 0.00 2.85
241 242 3.244561 GGATGGTGTTGTTCCTGAAGAGA 60.245 47.826 0.00 0.00 0.00 3.10
242 243 4.566488 GGATGGTGTTGTTCCTGAAGAGAT 60.566 45.833 0.00 0.00 0.00 2.75
243 244 5.338381 GGATGGTGTTGTTCCTGAAGAGATA 60.338 44.000 0.00 0.00 0.00 1.98
244 245 5.560722 TGGTGTTGTTCCTGAAGAGATAA 57.439 39.130 0.00 0.00 0.00 1.75
245 246 5.551233 TGGTGTTGTTCCTGAAGAGATAAG 58.449 41.667 0.00 0.00 0.00 1.73
246 247 4.938226 GGTGTTGTTCCTGAAGAGATAAGG 59.062 45.833 0.00 0.00 0.00 2.69
247 248 5.513267 GGTGTTGTTCCTGAAGAGATAAGGT 60.513 44.000 0.00 0.00 32.59 3.50
248 249 6.295688 GGTGTTGTTCCTGAAGAGATAAGGTA 60.296 42.308 0.00 0.00 32.59 3.08
249 250 6.814146 GTGTTGTTCCTGAAGAGATAAGGTAG 59.186 42.308 0.00 0.00 32.59 3.18
250 251 6.724441 TGTTGTTCCTGAAGAGATAAGGTAGA 59.276 38.462 0.00 0.00 32.59 2.59
251 252 7.400339 TGTTGTTCCTGAAGAGATAAGGTAGAT 59.600 37.037 0.00 0.00 32.59 1.98
252 253 7.353414 TGTTCCTGAAGAGATAAGGTAGATG 57.647 40.000 0.00 0.00 32.59 2.90
253 254 6.325028 TGTTCCTGAAGAGATAAGGTAGATGG 59.675 42.308 0.00 0.00 32.59 3.51
254 255 6.031964 TCCTGAAGAGATAAGGTAGATGGT 57.968 41.667 0.00 0.00 32.59 3.55
255 256 6.071984 TCCTGAAGAGATAAGGTAGATGGTC 58.928 44.000 0.00 0.00 32.59 4.02
256 257 5.048364 CCTGAAGAGATAAGGTAGATGGTCG 60.048 48.000 0.00 0.00 0.00 4.79
257 258 5.446860 TGAAGAGATAAGGTAGATGGTCGT 58.553 41.667 0.00 0.00 0.00 4.34
258 259 5.892119 TGAAGAGATAAGGTAGATGGTCGTT 59.108 40.000 0.00 0.00 0.00 3.85
259 260 6.039493 TGAAGAGATAAGGTAGATGGTCGTTC 59.961 42.308 0.00 0.00 0.00 3.95
260 261 4.515944 AGAGATAAGGTAGATGGTCGTTCG 59.484 45.833 0.00 0.00 0.00 3.95
261 262 3.568853 AGATAAGGTAGATGGTCGTTCGG 59.431 47.826 0.00 0.00 0.00 4.30
262 263 1.553706 AAGGTAGATGGTCGTTCGGT 58.446 50.000 0.00 0.00 0.00 4.69
263 264 0.815734 AGGTAGATGGTCGTTCGGTG 59.184 55.000 0.00 0.00 0.00 4.94
264 265 0.179119 GGTAGATGGTCGTTCGGTGG 60.179 60.000 0.00 0.00 0.00 4.61
265 266 0.529378 GTAGATGGTCGTTCGGTGGT 59.471 55.000 0.00 0.00 0.00 4.16
266 267 0.528924 TAGATGGTCGTTCGGTGGTG 59.471 55.000 0.00 0.00 0.00 4.17
267 268 1.740296 GATGGTCGTTCGGTGGTGG 60.740 63.158 0.00 0.00 0.00 4.61
268 269 3.248446 ATGGTCGTTCGGTGGTGGG 62.248 63.158 0.00 0.00 0.00 4.61
272 273 3.697747 CGTTCGGTGGTGGGCCTA 61.698 66.667 4.53 0.00 35.27 3.93
273 274 2.046604 GTTCGGTGGTGGGCCTAC 60.047 66.667 11.52 11.52 35.27 3.18
274 275 2.527123 TTCGGTGGTGGGCCTACA 60.527 61.111 21.99 6.01 35.27 2.74
275 276 1.921346 TTCGGTGGTGGGCCTACAT 60.921 57.895 21.99 0.00 35.27 2.29
276 277 2.124736 CGGTGGTGGGCCTACATG 60.125 66.667 21.99 3.25 35.27 3.21
277 278 2.966732 CGGTGGTGGGCCTACATGT 61.967 63.158 21.99 2.69 35.27 3.21
278 279 1.618876 CGGTGGTGGGCCTACATGTA 61.619 60.000 21.99 5.25 35.27 2.29
279 280 0.180406 GGTGGTGGGCCTACATGTAG 59.820 60.000 23.58 23.58 35.27 2.74
280 281 1.200519 GTGGTGGGCCTACATGTAGA 58.799 55.000 30.41 10.81 35.21 2.59
281 282 1.768870 GTGGTGGGCCTACATGTAGAT 59.231 52.381 30.41 0.00 35.21 1.98
282 283 2.969950 GTGGTGGGCCTACATGTAGATA 59.030 50.000 30.41 12.82 35.21 1.98
283 284 3.389983 GTGGTGGGCCTACATGTAGATAA 59.610 47.826 30.41 12.60 35.21 1.75
284 285 4.041464 TGGTGGGCCTACATGTAGATAAA 58.959 43.478 30.41 12.92 35.21 1.40
285 286 4.102524 TGGTGGGCCTACATGTAGATAAAG 59.897 45.833 30.41 16.12 35.21 1.85
286 287 4.065789 GTGGGCCTACATGTAGATAAAGC 58.934 47.826 30.41 23.44 35.21 3.51
287 288 3.244078 TGGGCCTACATGTAGATAAAGCG 60.244 47.826 30.41 14.82 35.21 4.68
288 289 3.006537 GGGCCTACATGTAGATAAAGCGA 59.993 47.826 30.41 0.00 35.21 4.93
289 290 4.238514 GGCCTACATGTAGATAAAGCGAG 58.761 47.826 30.41 13.53 35.21 5.03
290 291 3.675698 GCCTACATGTAGATAAAGCGAGC 59.324 47.826 30.41 18.65 35.21 5.03
291 292 3.914966 CCTACATGTAGATAAAGCGAGCG 59.085 47.826 30.41 8.41 35.21 5.03
292 293 2.743938 ACATGTAGATAAAGCGAGCGG 58.256 47.619 0.00 0.00 0.00 5.52
293 294 2.100916 ACATGTAGATAAAGCGAGCGGT 59.899 45.455 0.00 0.00 0.00 5.68
294 295 2.203800 TGTAGATAAAGCGAGCGGTG 57.796 50.000 0.00 0.00 0.00 4.94
295 296 0.853419 GTAGATAAAGCGAGCGGTGC 59.147 55.000 0.00 0.00 0.00 5.01
296 297 0.594028 TAGATAAAGCGAGCGGTGCG 60.594 55.000 0.00 0.00 37.44 5.34
297 298 1.876714 GATAAAGCGAGCGGTGCGA 60.877 57.895 9.95 0.00 37.44 5.10
298 299 2.078958 GATAAAGCGAGCGGTGCGAC 62.079 60.000 9.95 2.94 37.44 5.19
337 338 4.699522 GCGCCGTCTGGGAAGGTT 62.700 66.667 0.00 0.00 38.47 3.50
338 339 2.032071 CGCCGTCTGGGAAGGTTT 59.968 61.111 1.99 0.00 38.47 3.27
339 340 2.033194 CGCCGTCTGGGAAGGTTTC 61.033 63.158 1.99 0.00 38.47 2.78
355 356 7.859540 GGAAGGTTTCCCTAAAGATAAGTACT 58.140 38.462 0.00 0.00 44.30 2.73
356 357 8.985922 GGAAGGTTTCCCTAAAGATAAGTACTA 58.014 37.037 0.00 0.00 44.30 1.82
359 360 9.779951 AGGTTTCCCTAAAGATAAGTACTAAGA 57.220 33.333 0.00 0.00 40.19 2.10
360 361 9.814899 GGTTTCCCTAAAGATAAGTACTAAGAC 57.185 37.037 0.00 0.00 0.00 3.01
364 365 8.693625 TCCCTAAAGATAAGTACTAAGACTTGC 58.306 37.037 0.00 0.00 39.96 4.01
365 366 8.475639 CCCTAAAGATAAGTACTAAGACTTGCA 58.524 37.037 0.00 0.00 39.96 4.08
369 370 7.778470 AGATAAGTACTAAGACTTGCATTGC 57.222 36.000 0.46 0.46 39.96 3.56
370 371 7.331026 AGATAAGTACTAAGACTTGCATTGCA 58.669 34.615 7.38 7.38 39.96 4.08
371 372 7.989741 AGATAAGTACTAAGACTTGCATTGCAT 59.010 33.333 12.95 0.00 39.96 3.96
372 373 5.808042 AGTACTAAGACTTGCATTGCATG 57.192 39.130 19.65 19.65 38.76 4.06
381 382 2.974717 CATTGCATGCCACAGCCA 59.025 55.556 16.68 0.00 38.69 4.75
382 383 1.447140 CATTGCATGCCACAGCCAC 60.447 57.895 16.68 0.00 38.69 5.01
383 384 1.909287 ATTGCATGCCACAGCCACA 60.909 52.632 16.68 0.00 38.69 4.17
384 385 1.884075 ATTGCATGCCACAGCCACAG 61.884 55.000 16.68 0.00 38.69 3.66
385 386 4.430765 GCATGCCACAGCCACAGC 62.431 66.667 6.36 0.00 38.69 4.40
386 387 3.755628 CATGCCACAGCCACAGCC 61.756 66.667 0.00 0.00 41.25 4.85
387 388 4.289101 ATGCCACAGCCACAGCCA 62.289 61.111 0.00 0.00 41.25 4.75
388 389 4.960866 TGCCACAGCCACAGCCAG 62.961 66.667 0.00 0.00 41.25 4.85
389 390 4.648626 GCCACAGCCACAGCCAGA 62.649 66.667 0.00 0.00 41.25 3.86
390 391 2.113774 CCACAGCCACAGCCAGAA 59.886 61.111 0.00 0.00 41.25 3.02
391 392 2.263741 CCACAGCCACAGCCAGAAC 61.264 63.158 0.00 0.00 41.25 3.01
392 393 1.526686 CACAGCCACAGCCAGAACA 60.527 57.895 0.00 0.00 41.25 3.18
393 394 1.102809 CACAGCCACAGCCAGAACAA 61.103 55.000 0.00 0.00 41.25 2.83
394 395 0.395586 ACAGCCACAGCCAGAACAAA 60.396 50.000 0.00 0.00 41.25 2.83
395 396 0.746063 CAGCCACAGCCAGAACAAAA 59.254 50.000 0.00 0.00 41.25 2.44
396 397 1.035139 AGCCACAGCCAGAACAAAAG 58.965 50.000 0.00 0.00 41.25 2.27
397 398 0.598419 GCCACAGCCAGAACAAAAGC 60.598 55.000 0.00 0.00 0.00 3.51
398 399 0.032540 CCACAGCCAGAACAAAAGCC 59.967 55.000 0.00 0.00 0.00 4.35
399 400 1.035139 CACAGCCAGAACAAAAGCCT 58.965 50.000 0.00 0.00 0.00 4.58
400 401 1.410153 CACAGCCAGAACAAAAGCCTT 59.590 47.619 0.00 0.00 0.00 4.35
401 402 1.410153 ACAGCCAGAACAAAAGCCTTG 59.590 47.619 0.00 0.00 0.00 3.61
402 403 0.390492 AGCCAGAACAAAAGCCTTGC 59.610 50.000 0.00 0.00 0.00 4.01
403 404 0.601046 GCCAGAACAAAAGCCTTGCC 60.601 55.000 0.00 0.00 0.00 4.52
404 405 0.752054 CCAGAACAAAAGCCTTGCCA 59.248 50.000 0.00 0.00 0.00 4.92
405 406 1.345415 CCAGAACAAAAGCCTTGCCAT 59.655 47.619 0.00 0.00 0.00 4.40
406 407 2.224354 CCAGAACAAAAGCCTTGCCATT 60.224 45.455 0.00 0.00 0.00 3.16
407 408 3.469739 CAGAACAAAAGCCTTGCCATTT 58.530 40.909 0.00 0.00 0.00 2.32
408 409 3.249080 CAGAACAAAAGCCTTGCCATTTG 59.751 43.478 11.23 11.23 39.82 2.32
409 410 1.596603 ACAAAAGCCTTGCCATTTGC 58.403 45.000 12.22 0.00 38.52 3.68
410 411 1.141455 ACAAAAGCCTTGCCATTTGCT 59.859 42.857 12.22 0.00 38.52 3.91
411 412 2.368221 ACAAAAGCCTTGCCATTTGCTA 59.632 40.909 12.22 0.00 38.52 3.49
412 413 3.181456 ACAAAAGCCTTGCCATTTGCTAA 60.181 39.130 12.22 0.00 38.52 3.09
413 414 3.767902 AAAGCCTTGCCATTTGCTAAA 57.232 38.095 0.00 0.00 42.00 1.85
414 415 3.986996 AAGCCTTGCCATTTGCTAAAT 57.013 38.095 0.00 0.00 42.00 1.40
415 416 5.419239 AAAGCCTTGCCATTTGCTAAATA 57.581 34.783 0.00 0.00 42.00 1.40
416 417 5.619132 AAGCCTTGCCATTTGCTAAATAT 57.381 34.783 0.00 0.00 42.00 1.28
417 418 5.205759 AGCCTTGCCATTTGCTAAATATC 57.794 39.130 0.00 0.00 42.00 1.63
418 419 3.983344 GCCTTGCCATTTGCTAAATATCG 59.017 43.478 0.00 0.00 42.00 2.92
419 420 4.549458 CCTTGCCATTTGCTAAATATCGG 58.451 43.478 0.00 0.00 42.00 4.18
420 421 4.037923 CCTTGCCATTTGCTAAATATCGGT 59.962 41.667 0.00 0.00 42.00 4.69
421 422 4.566545 TGCCATTTGCTAAATATCGGTG 57.433 40.909 0.00 0.00 42.00 4.94
422 423 3.243367 TGCCATTTGCTAAATATCGGTGC 60.243 43.478 0.00 0.00 42.00 5.01
423 424 3.004734 GCCATTTGCTAAATATCGGTGCT 59.995 43.478 0.00 0.00 36.87 4.40
424 425 4.215399 GCCATTTGCTAAATATCGGTGCTA 59.785 41.667 0.00 0.00 36.87 3.49
425 426 5.106157 GCCATTTGCTAAATATCGGTGCTAT 60.106 40.000 0.00 0.00 36.87 2.97
426 427 6.093495 GCCATTTGCTAAATATCGGTGCTATA 59.907 38.462 0.00 0.00 36.87 1.31
427 428 7.361713 GCCATTTGCTAAATATCGGTGCTATAA 60.362 37.037 0.00 0.00 36.87 0.98
428 429 7.962918 CCATTTGCTAAATATCGGTGCTATAAC 59.037 37.037 0.00 0.00 0.00 1.89
429 430 8.503196 CATTTGCTAAATATCGGTGCTATAACA 58.497 33.333 0.00 0.00 0.00 2.41
430 431 8.615878 TTTGCTAAATATCGGTGCTATAACAT 57.384 30.769 0.00 0.00 0.00 2.71
431 432 7.595311 TGCTAAATATCGGTGCTATAACATG 57.405 36.000 0.00 0.00 0.00 3.21
432 433 6.593770 TGCTAAATATCGGTGCTATAACATGG 59.406 38.462 0.00 0.00 0.00 3.66
433 434 6.816640 GCTAAATATCGGTGCTATAACATGGA 59.183 38.462 0.00 0.00 0.00 3.41
434 435 7.201530 GCTAAATATCGGTGCTATAACATGGAC 60.202 40.741 0.00 0.00 0.00 4.02
435 436 5.738619 ATATCGGTGCTATAACATGGACA 57.261 39.130 0.00 0.00 0.00 4.02
436 437 4.623932 ATCGGTGCTATAACATGGACAT 57.376 40.909 0.00 0.00 0.00 3.06
437 438 3.990092 TCGGTGCTATAACATGGACATC 58.010 45.455 0.00 0.00 0.00 3.06
438 439 3.641436 TCGGTGCTATAACATGGACATCT 59.359 43.478 0.00 0.00 0.00 2.90
439 440 4.830600 TCGGTGCTATAACATGGACATCTA 59.169 41.667 0.00 0.00 0.00 1.98
440 441 5.480422 TCGGTGCTATAACATGGACATCTAT 59.520 40.000 0.00 0.00 0.00 1.98
441 442 6.014584 TCGGTGCTATAACATGGACATCTATT 60.015 38.462 0.00 0.00 0.00 1.73
442 443 6.650807 CGGTGCTATAACATGGACATCTATTT 59.349 38.462 0.00 0.00 0.00 1.40
443 444 7.148573 CGGTGCTATAACATGGACATCTATTTC 60.149 40.741 0.00 0.00 0.00 2.17
444 445 7.148573 GGTGCTATAACATGGACATCTATTTCG 60.149 40.741 0.00 0.00 0.00 3.46
445 446 7.598869 GTGCTATAACATGGACATCTATTTCGA 59.401 37.037 0.00 0.00 0.00 3.71
446 447 8.314021 TGCTATAACATGGACATCTATTTCGAT 58.686 33.333 0.00 0.00 0.00 3.59
447 448 8.812329 GCTATAACATGGACATCTATTTCGATC 58.188 37.037 0.00 0.00 0.00 3.69
448 449 7.818493 ATAACATGGACATCTATTTCGATCG 57.182 36.000 9.36 9.36 0.00 3.69
449 450 5.453567 ACATGGACATCTATTTCGATCGA 57.546 39.130 15.15 15.15 0.00 3.59
454 455 5.748630 TGGACATCTATTTCGATCGAACTTG 59.251 40.000 29.15 23.16 33.41 3.16
461 462 2.293677 TCGATCGAACTTGGACATGG 57.706 50.000 16.99 0.00 0.00 3.66
462 463 1.134818 TCGATCGAACTTGGACATGGG 60.135 52.381 16.99 0.00 0.00 4.00
474 475 1.677217 GGACATGGGTTCTGCACTCTC 60.677 57.143 0.00 0.00 0.00 3.20
486 487 3.386078 TCTGCACTCTCTGAGAAAACTGT 59.614 43.478 8.95 0.00 33.32 3.55
513 515 4.484537 AGGATCACAGATTCAGTTCAGG 57.515 45.455 0.00 0.00 0.00 3.86
536 539 7.701078 CAGGATGAATTTACAGCTCAATTTCTG 59.299 37.037 10.97 0.00 39.69 3.02
538 541 5.393124 TGAATTTACAGCTCAATTTCTGCG 58.607 37.500 10.97 0.00 33.80 5.18
548 551 5.870978 AGCTCAATTTCTGCGCAATTTATTT 59.129 32.000 13.05 0.00 38.28 1.40
551 554 7.215007 GCTCAATTTCTGCGCAATTTATTTTTC 59.785 33.333 13.05 0.00 35.73 2.29
559 568 4.640956 CGCAATTTATTTTTCAGCCAAGC 58.359 39.130 0.00 0.00 0.00 4.01
597 612 7.486870 ACTTTTACATCACAAGGAAAACGAAAC 59.513 33.333 0.00 0.00 0.00 2.78
662 687 2.540101 GCGGATGTTAATGACTTCTCGG 59.460 50.000 0.00 0.00 33.96 4.63
770 795 6.653273 TCTTTCTCTTGCATGAAGTAATCG 57.347 37.500 0.00 0.00 32.90 3.34
832 857 9.840690 TTAATAAACCCATAAAAACCCCTTAGT 57.159 29.630 0.00 0.00 0.00 2.24
939 966 0.824109 TAGACAGGAACCAGCATCCG 59.176 55.000 0.00 0.00 42.03 4.18
958 985 4.416601 CCGGTCCCTCTTCCCCCT 62.417 72.222 0.00 0.00 0.00 4.79
1163 1203 3.752665 CGGCCTTCTATCCTGACTACTA 58.247 50.000 0.00 0.00 0.00 1.82
1164 1204 3.502979 CGGCCTTCTATCCTGACTACTAC 59.497 52.174 0.00 0.00 0.00 2.73
1165 1205 3.827876 GGCCTTCTATCCTGACTACTACC 59.172 52.174 0.00 0.00 0.00 3.18
1166 1206 4.471548 GCCTTCTATCCTGACTACTACCA 58.528 47.826 0.00 0.00 0.00 3.25
1167 1207 4.521256 GCCTTCTATCCTGACTACTACCAG 59.479 50.000 0.00 0.00 0.00 4.00
1168 1208 5.697067 CCTTCTATCCTGACTACTACCAGT 58.303 45.833 0.00 0.00 0.00 4.00
1201 1241 1.000717 TGACGACGAAAGCTGTCATCA 60.001 47.619 4.41 0.84 36.34 3.07
1203 1243 1.000163 ACGACGAAAGCTGTCATCAGT 60.000 47.619 4.41 0.00 43.05 3.41
1206 1246 1.081892 CGAAAGCTGTCATCAGTGGG 58.918 55.000 4.41 0.00 43.05 4.61
1208 1248 1.003580 GAAAGCTGTCATCAGTGGGGA 59.996 52.381 0.00 0.00 43.05 4.81
1209 1249 0.326264 AAGCTGTCATCAGTGGGGAC 59.674 55.000 7.80 7.80 43.05 4.46
1212 1252 1.566211 CTGTCATCAGTGGGGACTCT 58.434 55.000 13.72 0.00 36.97 3.24
1215 1255 1.902508 GTCATCAGTGGGGACTCTTCA 59.097 52.381 7.56 0.00 30.18 3.02
1246 1298 3.512680 GTTCATAGTTCTGGACCTCACG 58.487 50.000 0.00 0.00 0.00 4.35
1260 1312 2.029518 CACGTGCCTCTGCTGACA 59.970 61.111 0.82 0.00 38.71 3.58
1287 1339 5.505173 AACTTGAGGTTTCACAACTCATG 57.495 39.130 0.00 0.00 33.90 3.07
1468 1537 5.147162 GGTTCAGTATTTTCTCTGTTTGCG 58.853 41.667 0.00 0.00 33.89 4.85
1477 1546 1.361668 CTCTGTTTGCGGCGCTGTAT 61.362 55.000 33.26 0.00 0.00 2.29
1490 1559 3.242413 GGCGCTGTATGTCTGTGTTATTG 60.242 47.826 7.64 0.00 0.00 1.90
1502 1573 4.333649 TCTGTGTTATTGCTTGCTATCTGC 59.666 41.667 0.00 0.00 43.25 4.26
1504 1575 3.309682 GTGTTATTGCTTGCTATCTGCGA 59.690 43.478 0.00 0.00 46.63 5.10
1512 1593 3.605692 GCTTGCTATCTGCGATGTTAAGC 60.606 47.826 13.53 13.53 46.63 3.09
1517 1598 1.909376 TCTGCGATGTTAAGCTCGTC 58.091 50.000 8.04 0.00 37.23 4.20
1896 2319 6.931840 TGGGTGCACTAAATTTTGGAAATTAC 59.068 34.615 17.98 0.00 0.00 1.89
1956 2379 4.288626 TCATGGGTGGGGATAGTATTTAGC 59.711 45.833 0.00 0.00 0.00 3.09
1980 2403 9.618890 AGCACTAGATTTGCAATCTAATTAAGA 57.381 29.630 0.00 0.00 42.83 2.10
2011 2443 2.057922 AGTTTGGACACACTGAGGGAT 58.942 47.619 0.00 0.00 0.00 3.85
2061 2497 9.705290 CTTTATTAAGGGTGCACTAAATTTTGT 57.295 29.630 17.98 0.00 0.00 2.83
2123 2559 1.884456 TTGATGGGTGGGGAATGGGG 61.884 60.000 0.00 0.00 0.00 4.96
2170 2607 8.543774 GTTCTTAACCATGATGATAGAAACTCG 58.456 37.037 0.00 0.00 0.00 4.18
2206 2678 7.120432 AGAGAAGAAAATTCTAACCTGACATGC 59.880 37.037 0.00 0.00 36.28 4.06
2274 2746 7.288810 AGGAAAAACTAGAAACAATGCATCA 57.711 32.000 0.00 0.00 0.00 3.07
2275 2747 7.899973 AGGAAAAACTAGAAACAATGCATCAT 58.100 30.769 0.00 0.00 0.00 2.45
2276 2748 8.370182 AGGAAAAACTAGAAACAATGCATCATT 58.630 29.630 0.00 0.00 34.04 2.57
2277 2749 8.992073 GGAAAAACTAGAAACAATGCATCATTT 58.008 29.630 0.00 3.53 31.05 2.32
2323 2795 5.412640 TGCATCATGGAAAATCATGTTGTC 58.587 37.500 13.77 8.99 42.40 3.18
2363 2835 5.656859 AGTTCAAATAACCTTTGCCCCTATC 59.343 40.000 0.00 0.00 0.00 2.08
2536 3016 9.503427 GTGTAGTATTCATGCTTGAAATAAACC 57.497 33.333 17.82 6.69 44.70 3.27
2575 3057 6.040278 TGAAACCACAAATGCAGAAAGATACA 59.960 34.615 0.00 0.00 0.00 2.29
2941 3423 2.794103 TCCAACACAATGATCACCCAG 58.206 47.619 0.00 0.00 0.00 4.45
2987 3469 3.324993 GAGGCTGACTCTTGTGAAGAAG 58.675 50.000 2.46 0.00 43.14 2.85
3207 3719 4.082665 ACATTGAATCTGGATCATCGCT 57.917 40.909 0.00 0.00 0.00 4.93
3904 4470 7.692291 GCATTAAATTTATATCACATCGACCCG 59.308 37.037 0.00 0.00 0.00 5.28
3919 4485 2.307768 GACCCGACATAGGACATCTGA 58.692 52.381 0.00 0.00 0.00 3.27
3920 4486 2.693591 GACCCGACATAGGACATCTGAA 59.306 50.000 0.00 0.00 0.00 3.02
3924 4490 3.243569 CCGACATAGGACATCTGAACTCC 60.244 52.174 0.00 0.00 0.00 3.85
3931 4497 0.976641 ACATCTGAACTCCGGCTCAA 59.023 50.000 0.00 0.00 0.00 3.02
3932 4498 1.066573 ACATCTGAACTCCGGCTCAAG 60.067 52.381 0.00 0.00 0.00 3.02
3951 4517 6.907212 GCTCAAGTAATACAACCATTCATTCG 59.093 38.462 0.00 0.00 0.00 3.34
4006 4572 3.043586 CTGCACACGATCGTAATAGGTC 58.956 50.000 22.26 8.83 0.00 3.85
4007 4573 2.424246 TGCACACGATCGTAATAGGTCA 59.576 45.455 22.26 11.07 0.00 4.02
4011 4577 5.862323 GCACACGATCGTAATAGGTCATTAT 59.138 40.000 22.26 0.00 31.78 1.28
4079 4649 3.748048 TGATTCTGCACAAGCTGTTCTAC 59.252 43.478 0.00 0.00 42.74 2.59
4082 4652 2.365293 TCTGCACAAGCTGTTCTACTGA 59.635 45.455 0.00 0.00 42.74 3.41
4090 4660 6.870965 CACAAGCTGTTCTACTGAGATACTTT 59.129 38.462 0.00 0.00 0.00 2.66
4114 4684 9.606631 TTTAGTTTCTGTTGGTAATGCAAATTT 57.393 25.926 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.742248 AAACCAACCCCCACCGGTG 62.742 63.158 28.26 28.26 35.83 4.94
13 14 3.431415 AAACCAACCCCCACCGGT 61.431 61.111 0.00 0.00 37.93 5.28
14 15 2.915137 CAAACCAACCCCCACCGG 60.915 66.667 0.00 0.00 0.00 5.28
15 16 3.611674 GCAAACCAACCCCCACCG 61.612 66.667 0.00 0.00 0.00 4.94
16 17 2.444895 TGCAAACCAACCCCCACC 60.445 61.111 0.00 0.00 0.00 4.61
17 18 3.137687 CTGCAAACCAACCCCCAC 58.862 61.111 0.00 0.00 0.00 4.61
18 19 2.841988 GCTGCAAACCAACCCCCA 60.842 61.111 0.00 0.00 0.00 4.96
19 20 3.989787 CGCTGCAAACCAACCCCC 61.990 66.667 0.00 0.00 0.00 5.40
20 21 4.662961 GCGCTGCAAACCAACCCC 62.663 66.667 0.00 0.00 0.00 4.95
21 22 3.605664 AGCGCTGCAAACCAACCC 61.606 61.111 10.39 0.00 0.00 4.11
22 23 2.355009 CAGCGCTGCAAACCAACC 60.355 61.111 26.68 0.00 0.00 3.77
23 24 2.355009 CCAGCGCTGCAAACCAAC 60.355 61.111 31.96 0.00 0.00 3.77
24 25 2.832661 ACCAGCGCTGCAAACCAA 60.833 55.556 31.96 0.00 0.00 3.67
25 26 3.286751 GACCAGCGCTGCAAACCA 61.287 61.111 31.96 0.00 0.00 3.67
26 27 4.389576 CGACCAGCGCTGCAAACC 62.390 66.667 31.96 15.69 0.00 3.27
131 132 3.106986 TAGATGCTTGCGCCTCCCC 62.107 63.158 4.18 0.00 31.98 4.81
132 133 1.889573 GTAGATGCTTGCGCCTCCC 60.890 63.158 4.18 0.00 31.98 4.30
133 134 0.744414 TTGTAGATGCTTGCGCCTCC 60.744 55.000 4.18 0.00 31.98 4.30
134 135 0.654683 CTTGTAGATGCTTGCGCCTC 59.345 55.000 4.18 0.00 34.43 4.70
135 136 0.250234 TCTTGTAGATGCTTGCGCCT 59.750 50.000 4.18 0.00 34.43 5.52
136 137 0.654683 CTCTTGTAGATGCTTGCGCC 59.345 55.000 4.18 0.00 34.43 6.53
137 138 1.592081 CTCTCTTGTAGATGCTTGCGC 59.408 52.381 0.00 0.00 32.41 6.09
138 139 2.159184 TCCTCTCTTGTAGATGCTTGCG 60.159 50.000 0.00 0.00 32.41 4.85
139 140 3.533606 TCCTCTCTTGTAGATGCTTGC 57.466 47.619 0.00 0.00 32.41 4.01
140 141 5.336150 TCTTCCTCTCTTGTAGATGCTTG 57.664 43.478 0.00 0.00 32.41 4.01
141 142 6.365970 TTTCTTCCTCTCTTGTAGATGCTT 57.634 37.500 0.00 0.00 32.41 3.91
142 143 6.212388 TCTTTTCTTCCTCTCTTGTAGATGCT 59.788 38.462 0.00 0.00 32.41 3.79
143 144 6.402222 TCTTTTCTTCCTCTCTTGTAGATGC 58.598 40.000 0.00 0.00 32.41 3.91
144 145 7.041107 CCTCTTTTCTTCCTCTCTTGTAGATG 58.959 42.308 0.00 0.00 32.41 2.90
145 146 6.351796 GCCTCTTTTCTTCCTCTCTTGTAGAT 60.352 42.308 0.00 0.00 32.41 1.98
146 147 5.046950 GCCTCTTTTCTTCCTCTCTTGTAGA 60.047 44.000 0.00 0.00 0.00 2.59
147 148 5.175127 GCCTCTTTTCTTCCTCTCTTGTAG 58.825 45.833 0.00 0.00 0.00 2.74
148 149 4.322049 CGCCTCTTTTCTTCCTCTCTTGTA 60.322 45.833 0.00 0.00 0.00 2.41
149 150 3.556004 CGCCTCTTTTCTTCCTCTCTTGT 60.556 47.826 0.00 0.00 0.00 3.16
150 151 2.999355 CGCCTCTTTTCTTCCTCTCTTG 59.001 50.000 0.00 0.00 0.00 3.02
151 152 2.900546 TCGCCTCTTTTCTTCCTCTCTT 59.099 45.455 0.00 0.00 0.00 2.85
152 153 2.495669 CTCGCCTCTTTTCTTCCTCTCT 59.504 50.000 0.00 0.00 0.00 3.10
153 154 2.887337 CTCGCCTCTTTTCTTCCTCTC 58.113 52.381 0.00 0.00 0.00 3.20
154 155 1.066502 GCTCGCCTCTTTTCTTCCTCT 60.067 52.381 0.00 0.00 0.00 3.69
155 156 1.364721 GCTCGCCTCTTTTCTTCCTC 58.635 55.000 0.00 0.00 0.00 3.71
156 157 0.390472 CGCTCGCCTCTTTTCTTCCT 60.390 55.000 0.00 0.00 0.00 3.36
157 158 1.362406 CCGCTCGCCTCTTTTCTTCC 61.362 60.000 0.00 0.00 0.00 3.46
158 159 0.389948 TCCGCTCGCCTCTTTTCTTC 60.390 55.000 0.00 0.00 0.00 2.87
159 160 0.390472 CTCCGCTCGCCTCTTTTCTT 60.390 55.000 0.00 0.00 0.00 2.52
160 161 1.216710 CTCCGCTCGCCTCTTTTCT 59.783 57.895 0.00 0.00 0.00 2.52
161 162 1.811679 CCTCCGCTCGCCTCTTTTC 60.812 63.158 0.00 0.00 0.00 2.29
162 163 2.232298 CTCCTCCGCTCGCCTCTTTT 62.232 60.000 0.00 0.00 0.00 2.27
163 164 2.680352 TCCTCCGCTCGCCTCTTT 60.680 61.111 0.00 0.00 0.00 2.52
164 165 3.144193 CTCCTCCGCTCGCCTCTT 61.144 66.667 0.00 0.00 0.00 2.85
168 169 4.821589 CAACCTCCTCCGCTCGCC 62.822 72.222 0.00 0.00 0.00 5.54
171 172 4.821589 CCGCAACCTCCTCCGCTC 62.822 72.222 0.00 0.00 0.00 5.03
173 174 3.718210 CTACCGCAACCTCCTCCGC 62.718 68.421 0.00 0.00 0.00 5.54
174 175 2.005960 CTCTACCGCAACCTCCTCCG 62.006 65.000 0.00 0.00 0.00 4.63
175 176 1.677637 CCTCTACCGCAACCTCCTCC 61.678 65.000 0.00 0.00 0.00 4.30
176 177 0.683504 TCCTCTACCGCAACCTCCTC 60.684 60.000 0.00 0.00 0.00 3.71
177 178 0.684805 CTCCTCTACCGCAACCTCCT 60.685 60.000 0.00 0.00 0.00 3.69
178 179 0.683504 TCTCCTCTACCGCAACCTCC 60.684 60.000 0.00 0.00 0.00 4.30
179 180 1.067821 CATCTCCTCTACCGCAACCTC 59.932 57.143 0.00 0.00 0.00 3.85
180 181 1.115467 CATCTCCTCTACCGCAACCT 58.885 55.000 0.00 0.00 0.00 3.50
181 182 0.530870 GCATCTCCTCTACCGCAACC 60.531 60.000 0.00 0.00 0.00 3.77
182 183 0.175760 TGCATCTCCTCTACCGCAAC 59.824 55.000 0.00 0.00 0.00 4.17
183 184 0.175760 GTGCATCTCCTCTACCGCAA 59.824 55.000 0.00 0.00 0.00 4.85
184 185 1.816537 GTGCATCTCCTCTACCGCA 59.183 57.895 0.00 0.00 0.00 5.69
185 186 1.299468 CGTGCATCTCCTCTACCGC 60.299 63.158 0.00 0.00 0.00 5.68
186 187 0.309302 CTCGTGCATCTCCTCTACCG 59.691 60.000 0.00 0.00 0.00 4.02
187 188 0.031449 GCTCGTGCATCTCCTCTACC 59.969 60.000 4.26 0.00 39.41 3.18
188 189 0.741326 TGCTCGTGCATCTCCTCTAC 59.259 55.000 8.30 0.00 45.31 2.59
189 190 3.191182 TGCTCGTGCATCTCCTCTA 57.809 52.632 8.30 0.00 45.31 2.43
190 191 4.024717 TGCTCGTGCATCTCCTCT 57.975 55.556 8.30 0.00 45.31 3.69
199 200 2.578495 CACTCATTCTTTTGCTCGTGC 58.422 47.619 1.71 1.71 40.20 5.34
200 201 2.807967 TCCACTCATTCTTTTGCTCGTG 59.192 45.455 0.00 0.00 0.00 4.35
201 202 3.126001 TCCACTCATTCTTTTGCTCGT 57.874 42.857 0.00 0.00 0.00 4.18
202 203 3.181503 CCATCCACTCATTCTTTTGCTCG 60.182 47.826 0.00 0.00 0.00 5.03
203 204 3.760684 ACCATCCACTCATTCTTTTGCTC 59.239 43.478 0.00 0.00 0.00 4.26
204 205 3.508793 CACCATCCACTCATTCTTTTGCT 59.491 43.478 0.00 0.00 0.00 3.91
205 206 3.256631 ACACCATCCACTCATTCTTTTGC 59.743 43.478 0.00 0.00 0.00 3.68
206 207 5.221303 ACAACACCATCCACTCATTCTTTTG 60.221 40.000 0.00 0.00 0.00 2.44
207 208 4.895297 ACAACACCATCCACTCATTCTTTT 59.105 37.500 0.00 0.00 0.00 2.27
208 209 4.473444 ACAACACCATCCACTCATTCTTT 58.527 39.130 0.00 0.00 0.00 2.52
209 210 4.104383 ACAACACCATCCACTCATTCTT 57.896 40.909 0.00 0.00 0.00 2.52
210 211 3.795688 ACAACACCATCCACTCATTCT 57.204 42.857 0.00 0.00 0.00 2.40
211 212 3.191371 GGAACAACACCATCCACTCATTC 59.809 47.826 0.00 0.00 33.30 2.67
212 213 3.157087 GGAACAACACCATCCACTCATT 58.843 45.455 0.00 0.00 33.30 2.57
213 214 2.376518 AGGAACAACACCATCCACTCAT 59.623 45.455 0.00 0.00 35.62 2.90
214 215 1.774254 AGGAACAACACCATCCACTCA 59.226 47.619 0.00 0.00 35.62 3.41
215 216 2.154462 CAGGAACAACACCATCCACTC 58.846 52.381 0.00 0.00 35.62 3.51
216 217 1.774254 TCAGGAACAACACCATCCACT 59.226 47.619 0.00 0.00 35.62 4.00
217 218 2.270352 TCAGGAACAACACCATCCAC 57.730 50.000 0.00 0.00 35.62 4.02
218 219 2.441375 TCTTCAGGAACAACACCATCCA 59.559 45.455 0.00 0.00 35.62 3.41
219 220 3.077359 CTCTTCAGGAACAACACCATCC 58.923 50.000 0.00 0.00 0.00 3.51
220 221 4.008074 TCTCTTCAGGAACAACACCATC 57.992 45.455 0.00 0.00 0.00 3.51
221 222 4.647564 ATCTCTTCAGGAACAACACCAT 57.352 40.909 0.00 0.00 0.00 3.55
222 223 5.513094 CCTTATCTCTTCAGGAACAACACCA 60.513 44.000 0.00 0.00 0.00 4.17
223 224 4.938226 CCTTATCTCTTCAGGAACAACACC 59.062 45.833 0.00 0.00 0.00 4.16
224 225 5.552178 ACCTTATCTCTTCAGGAACAACAC 58.448 41.667 0.00 0.00 0.00 3.32
225 226 5.825593 ACCTTATCTCTTCAGGAACAACA 57.174 39.130 0.00 0.00 0.00 3.33
226 227 7.171630 TCTACCTTATCTCTTCAGGAACAAC 57.828 40.000 0.00 0.00 0.00 3.32
227 228 7.147655 CCATCTACCTTATCTCTTCAGGAACAA 60.148 40.741 0.00 0.00 0.00 2.83
228 229 6.325028 CCATCTACCTTATCTCTTCAGGAACA 59.675 42.308 0.00 0.00 0.00 3.18
229 230 6.325286 ACCATCTACCTTATCTCTTCAGGAAC 59.675 42.308 0.00 0.00 0.00 3.62
230 231 6.444704 ACCATCTACCTTATCTCTTCAGGAA 58.555 40.000 0.00 0.00 0.00 3.36
231 232 6.031964 ACCATCTACCTTATCTCTTCAGGA 57.968 41.667 0.00 0.00 0.00 3.86
232 233 5.048364 CGACCATCTACCTTATCTCTTCAGG 60.048 48.000 0.00 0.00 0.00 3.86
233 234 5.533154 ACGACCATCTACCTTATCTCTTCAG 59.467 44.000 0.00 0.00 0.00 3.02
234 235 5.446860 ACGACCATCTACCTTATCTCTTCA 58.553 41.667 0.00 0.00 0.00 3.02
235 236 6.394025 AACGACCATCTACCTTATCTCTTC 57.606 41.667 0.00 0.00 0.00 2.87
236 237 5.008811 CGAACGACCATCTACCTTATCTCTT 59.991 44.000 0.00 0.00 0.00 2.85
237 238 4.515944 CGAACGACCATCTACCTTATCTCT 59.484 45.833 0.00 0.00 0.00 3.10
238 239 4.320348 CCGAACGACCATCTACCTTATCTC 60.320 50.000 0.00 0.00 0.00 2.75
239 240 3.568853 CCGAACGACCATCTACCTTATCT 59.431 47.826 0.00 0.00 0.00 1.98
240 241 3.317430 ACCGAACGACCATCTACCTTATC 59.683 47.826 0.00 0.00 0.00 1.75
241 242 3.067742 CACCGAACGACCATCTACCTTAT 59.932 47.826 0.00 0.00 0.00 1.73
242 243 2.424601 CACCGAACGACCATCTACCTTA 59.575 50.000 0.00 0.00 0.00 2.69
243 244 1.203994 CACCGAACGACCATCTACCTT 59.796 52.381 0.00 0.00 0.00 3.50
244 245 0.815734 CACCGAACGACCATCTACCT 59.184 55.000 0.00 0.00 0.00 3.08
245 246 0.179119 CCACCGAACGACCATCTACC 60.179 60.000 0.00 0.00 0.00 3.18
246 247 0.529378 ACCACCGAACGACCATCTAC 59.471 55.000 0.00 0.00 0.00 2.59
247 248 0.528924 CACCACCGAACGACCATCTA 59.471 55.000 0.00 0.00 0.00 1.98
248 249 1.292223 CACCACCGAACGACCATCT 59.708 57.895 0.00 0.00 0.00 2.90
249 250 1.740296 CCACCACCGAACGACCATC 60.740 63.158 0.00 0.00 0.00 3.51
250 251 2.345991 CCACCACCGAACGACCAT 59.654 61.111 0.00 0.00 0.00 3.55
251 252 3.931247 CCCACCACCGAACGACCA 61.931 66.667 0.00 0.00 0.00 4.02
255 256 3.697747 TAGGCCCACCACCGAACG 61.698 66.667 0.00 0.00 39.06 3.95
256 257 2.046604 GTAGGCCCACCACCGAAC 60.047 66.667 0.00 0.00 39.06 3.95
257 258 1.921346 ATGTAGGCCCACCACCGAA 60.921 57.895 0.00 0.00 39.06 4.30
258 259 2.285069 ATGTAGGCCCACCACCGA 60.285 61.111 0.00 0.00 39.06 4.69
259 260 1.618876 TACATGTAGGCCCACCACCG 61.619 60.000 0.08 0.00 39.06 4.94
260 261 0.180406 CTACATGTAGGCCCACCACC 59.820 60.000 22.95 0.00 39.06 4.61
261 262 1.200519 TCTACATGTAGGCCCACCAC 58.799 55.000 28.33 0.00 39.06 4.16
262 263 2.190398 ATCTACATGTAGGCCCACCA 57.810 50.000 28.33 11.16 39.06 4.17
263 264 4.642429 CTTTATCTACATGTAGGCCCACC 58.358 47.826 28.33 0.00 34.06 4.61
264 265 4.065789 GCTTTATCTACATGTAGGCCCAC 58.934 47.826 28.33 13.08 34.06 4.61
265 266 3.244078 CGCTTTATCTACATGTAGGCCCA 60.244 47.826 28.33 12.85 34.06 5.36
266 267 3.006537 TCGCTTTATCTACATGTAGGCCC 59.993 47.826 28.33 12.69 34.06 5.80
267 268 4.238514 CTCGCTTTATCTACATGTAGGCC 58.761 47.826 28.33 12.12 34.06 5.19
268 269 3.675698 GCTCGCTTTATCTACATGTAGGC 59.324 47.826 28.33 21.98 34.06 3.93
269 270 3.914966 CGCTCGCTTTATCTACATGTAGG 59.085 47.826 28.33 15.36 34.06 3.18
270 271 3.914966 CCGCTCGCTTTATCTACATGTAG 59.085 47.826 24.37 24.37 34.56 2.74
271 272 3.317149 ACCGCTCGCTTTATCTACATGTA 59.683 43.478 5.25 5.25 0.00 2.29
272 273 2.100916 ACCGCTCGCTTTATCTACATGT 59.899 45.455 2.69 2.69 0.00 3.21
273 274 2.472861 CACCGCTCGCTTTATCTACATG 59.527 50.000 0.00 0.00 0.00 3.21
274 275 2.743938 CACCGCTCGCTTTATCTACAT 58.256 47.619 0.00 0.00 0.00 2.29
275 276 1.801395 GCACCGCTCGCTTTATCTACA 60.801 52.381 0.00 0.00 0.00 2.74
276 277 0.853419 GCACCGCTCGCTTTATCTAC 59.147 55.000 0.00 0.00 0.00 2.59
277 278 0.594028 CGCACCGCTCGCTTTATCTA 60.594 55.000 0.00 0.00 0.00 1.98
278 279 1.878522 CGCACCGCTCGCTTTATCT 60.879 57.895 0.00 0.00 0.00 1.98
279 280 1.876714 TCGCACCGCTCGCTTTATC 60.877 57.895 0.00 0.00 0.00 1.75
280 281 2.165301 GTCGCACCGCTCGCTTTAT 61.165 57.895 0.00 0.00 0.00 1.40
281 282 2.807895 GTCGCACCGCTCGCTTTA 60.808 61.111 0.00 0.00 0.00 1.85
320 321 4.699522 AACCTTCCCAGACGGCGC 62.700 66.667 6.90 0.00 0.00 6.53
321 322 2.032071 AAACCTTCCCAGACGGCG 59.968 61.111 4.80 4.80 0.00 6.46
322 323 1.674651 GGAAACCTTCCCAGACGGC 60.675 63.158 0.00 0.00 44.30 5.68
323 324 4.716003 GGAAACCTTCCCAGACGG 57.284 61.111 0.00 0.00 44.30 4.79
338 339 8.693625 GCAAGTCTTAGTACTTATCTTTAGGGA 58.306 37.037 0.00 0.00 37.61 4.20
339 340 8.475639 TGCAAGTCTTAGTACTTATCTTTAGGG 58.524 37.037 0.00 0.00 37.61 3.53
343 344 8.669243 GCAATGCAAGTCTTAGTACTTATCTTT 58.331 33.333 0.00 0.00 37.61 2.52
344 345 7.824289 TGCAATGCAAGTCTTAGTACTTATCTT 59.176 33.333 5.01 0.00 37.61 2.40
345 346 7.331026 TGCAATGCAAGTCTTAGTACTTATCT 58.669 34.615 5.01 0.00 37.61 1.98
346 347 7.539712 TGCAATGCAAGTCTTAGTACTTATC 57.460 36.000 5.01 0.00 37.61 1.75
347 348 7.923888 CATGCAATGCAAGTCTTAGTACTTAT 58.076 34.615 13.45 0.00 43.62 1.73
348 349 7.307493 CATGCAATGCAAGTCTTAGTACTTA 57.693 36.000 13.45 0.00 43.62 2.24
349 350 6.187125 CATGCAATGCAAGTCTTAGTACTT 57.813 37.500 13.45 0.00 43.62 2.24
350 351 5.808042 CATGCAATGCAAGTCTTAGTACT 57.192 39.130 13.45 0.00 43.62 2.73
365 366 1.884075 CTGTGGCTGTGGCATGCAAT 61.884 55.000 21.36 0.00 40.92 3.56
366 367 2.521224 TGTGGCTGTGGCATGCAA 60.521 55.556 21.36 4.92 40.92 4.08
367 368 2.986979 CTGTGGCTGTGGCATGCA 60.987 61.111 21.36 2.54 40.92 3.96
368 369 4.430765 GCTGTGGCTGTGGCATGC 62.431 66.667 9.90 9.90 40.92 4.06
369 370 3.755628 GGCTGTGGCTGTGGCATG 61.756 66.667 0.00 0.00 40.92 4.06
370 371 4.289101 TGGCTGTGGCTGTGGCAT 62.289 61.111 0.00 0.00 40.92 4.40
371 372 4.960866 CTGGCTGTGGCTGTGGCA 62.961 66.667 0.00 0.00 40.87 4.92
372 373 4.648626 TCTGGCTGTGGCTGTGGC 62.649 66.667 0.00 0.00 38.73 5.01
373 374 2.113774 TTCTGGCTGTGGCTGTGG 59.886 61.111 0.00 0.00 38.73 4.17
374 375 1.102809 TTGTTCTGGCTGTGGCTGTG 61.103 55.000 0.00 0.00 38.73 3.66
375 376 0.395586 TTTGTTCTGGCTGTGGCTGT 60.396 50.000 0.00 0.00 38.73 4.40
376 377 0.746063 TTTTGTTCTGGCTGTGGCTG 59.254 50.000 0.00 0.00 38.73 4.85
377 378 1.035139 CTTTTGTTCTGGCTGTGGCT 58.965 50.000 0.00 0.00 38.73 4.75
378 379 0.598419 GCTTTTGTTCTGGCTGTGGC 60.598 55.000 0.00 0.00 37.82 5.01
379 380 0.032540 GGCTTTTGTTCTGGCTGTGG 59.967 55.000 0.00 0.00 0.00 4.17
380 381 1.035139 AGGCTTTTGTTCTGGCTGTG 58.965 50.000 0.00 0.00 35.27 3.66
381 382 1.410153 CAAGGCTTTTGTTCTGGCTGT 59.590 47.619 0.00 0.00 36.71 4.40
382 383 1.870993 GCAAGGCTTTTGTTCTGGCTG 60.871 52.381 0.00 0.00 36.71 4.85
383 384 0.390492 GCAAGGCTTTTGTTCTGGCT 59.610 50.000 0.00 0.00 38.25 4.75
384 385 0.601046 GGCAAGGCTTTTGTTCTGGC 60.601 55.000 0.00 0.00 0.00 4.85
385 386 0.752054 TGGCAAGGCTTTTGTTCTGG 59.248 50.000 0.00 0.00 0.00 3.86
386 387 2.825861 ATGGCAAGGCTTTTGTTCTG 57.174 45.000 0.00 0.00 0.00 3.02
387 388 3.469739 CAAATGGCAAGGCTTTTGTTCT 58.530 40.909 19.90 0.00 31.95 3.01
388 389 2.031769 GCAAATGGCAAGGCTTTTGTTC 60.032 45.455 25.05 13.14 43.97 3.18
389 390 1.948834 GCAAATGGCAAGGCTTTTGTT 59.051 42.857 25.05 0.00 43.97 2.83
390 391 1.596603 GCAAATGGCAAGGCTTTTGT 58.403 45.000 25.05 0.48 43.97 2.83
401 402 3.004734 AGCACCGATATTTAGCAAATGGC 59.995 43.478 4.89 0.00 45.30 4.40
402 403 4.836125 AGCACCGATATTTAGCAAATGG 57.164 40.909 4.89 1.65 32.38 3.16
403 404 8.503196 TGTTATAGCACCGATATTTAGCAAATG 58.497 33.333 4.89 0.00 32.38 2.32
404 405 8.615878 TGTTATAGCACCGATATTTAGCAAAT 57.384 30.769 0.00 0.00 34.90 2.32
405 406 8.503196 CATGTTATAGCACCGATATTTAGCAAA 58.497 33.333 0.00 0.00 0.00 3.68
406 407 7.119116 CCATGTTATAGCACCGATATTTAGCAA 59.881 37.037 0.00 0.00 0.00 3.91
407 408 6.593770 CCATGTTATAGCACCGATATTTAGCA 59.406 38.462 0.00 0.00 0.00 3.49
408 409 6.816640 TCCATGTTATAGCACCGATATTTAGC 59.183 38.462 0.00 0.00 0.00 3.09
409 410 7.817478 TGTCCATGTTATAGCACCGATATTTAG 59.183 37.037 0.00 0.00 0.00 1.85
410 411 7.672240 TGTCCATGTTATAGCACCGATATTTA 58.328 34.615 0.00 0.00 0.00 1.40
411 412 6.530120 TGTCCATGTTATAGCACCGATATTT 58.470 36.000 0.00 0.00 0.00 1.40
412 413 6.109156 TGTCCATGTTATAGCACCGATATT 57.891 37.500 0.00 0.00 0.00 1.28
413 414 5.738619 TGTCCATGTTATAGCACCGATAT 57.261 39.130 0.00 0.00 0.00 1.63
414 415 5.480422 AGATGTCCATGTTATAGCACCGATA 59.520 40.000 0.00 0.00 0.00 2.92
415 416 4.284490 AGATGTCCATGTTATAGCACCGAT 59.716 41.667 0.00 0.00 0.00 4.18
416 417 3.641436 AGATGTCCATGTTATAGCACCGA 59.359 43.478 0.00 0.00 0.00 4.69
417 418 3.995199 AGATGTCCATGTTATAGCACCG 58.005 45.455 0.00 0.00 0.00 4.94
418 419 7.148573 CGAAATAGATGTCCATGTTATAGCACC 60.149 40.741 0.00 0.00 0.00 5.01
419 420 7.598869 TCGAAATAGATGTCCATGTTATAGCAC 59.401 37.037 0.00 0.00 0.00 4.40
420 421 7.666623 TCGAAATAGATGTCCATGTTATAGCA 58.333 34.615 0.00 0.00 0.00 3.49
421 422 8.709386 ATCGAAATAGATGTCCATGTTATAGC 57.291 34.615 0.00 0.00 0.00 2.97
422 423 9.014533 CGATCGAAATAGATGTCCATGTTATAG 57.985 37.037 10.26 0.00 0.00 1.31
423 424 8.736244 TCGATCGAAATAGATGTCCATGTTATA 58.264 33.333 16.99 0.00 0.00 0.98
424 425 7.602753 TCGATCGAAATAGATGTCCATGTTAT 58.397 34.615 16.99 0.00 0.00 1.89
425 426 6.977213 TCGATCGAAATAGATGTCCATGTTA 58.023 36.000 16.99 0.00 0.00 2.41
426 427 5.842907 TCGATCGAAATAGATGTCCATGTT 58.157 37.500 16.99 0.00 0.00 2.71
427 428 5.453567 TCGATCGAAATAGATGTCCATGT 57.546 39.130 16.99 0.00 0.00 3.21
428 429 5.923114 AGTTCGATCGAAATAGATGTCCATG 59.077 40.000 30.61 0.00 35.75 3.66
429 430 6.090483 AGTTCGATCGAAATAGATGTCCAT 57.910 37.500 30.61 4.30 35.75 3.41
430 431 5.515797 AGTTCGATCGAAATAGATGTCCA 57.484 39.130 30.61 2.68 35.75 4.02
431 432 5.175856 CCAAGTTCGATCGAAATAGATGTCC 59.824 44.000 30.61 15.39 35.75 4.02
432 433 5.977725 TCCAAGTTCGATCGAAATAGATGTC 59.022 40.000 30.61 16.07 35.75 3.06
433 434 5.749109 GTCCAAGTTCGATCGAAATAGATGT 59.251 40.000 30.61 12.54 35.75 3.06
434 435 5.748630 TGTCCAAGTTCGATCGAAATAGATG 59.251 40.000 30.61 22.97 35.75 2.90
435 436 5.902681 TGTCCAAGTTCGATCGAAATAGAT 58.097 37.500 30.61 13.28 35.75 1.98
436 437 5.319140 TGTCCAAGTTCGATCGAAATAGA 57.681 39.130 30.61 24.68 35.75 1.98
437 438 5.050769 CCATGTCCAAGTTCGATCGAAATAG 60.051 44.000 30.61 23.01 35.75 1.73
438 439 4.808895 CCATGTCCAAGTTCGATCGAAATA 59.191 41.667 30.61 15.37 35.75 1.40
439 440 3.623060 CCATGTCCAAGTTCGATCGAAAT 59.377 43.478 30.61 27.19 35.75 2.17
440 441 3.000041 CCATGTCCAAGTTCGATCGAAA 59.000 45.455 30.61 14.78 35.75 3.46
441 442 2.616960 CCATGTCCAAGTTCGATCGAA 58.383 47.619 25.96 25.96 0.00 3.71
442 443 1.134818 CCCATGTCCAAGTTCGATCGA 60.135 52.381 15.15 15.15 0.00 3.59
443 444 1.290203 CCCATGTCCAAGTTCGATCG 58.710 55.000 9.36 9.36 0.00 3.69
444 445 2.403252 ACCCATGTCCAAGTTCGATC 57.597 50.000 0.00 0.00 0.00 3.69
445 446 2.305927 AGAACCCATGTCCAAGTTCGAT 59.694 45.455 0.00 0.00 42.66 3.59
446 447 1.697432 AGAACCCATGTCCAAGTTCGA 59.303 47.619 0.00 0.00 42.66 3.71
447 448 1.806542 CAGAACCCATGTCCAAGTTCG 59.193 52.381 0.00 0.00 42.66 3.95
448 449 1.541588 GCAGAACCCATGTCCAAGTTC 59.458 52.381 0.00 0.00 39.09 3.01
449 450 1.133513 TGCAGAACCCATGTCCAAGTT 60.134 47.619 0.00 0.00 0.00 2.66
454 455 0.326264 AGAGTGCAGAACCCATGTCC 59.674 55.000 0.00 0.00 0.00 4.02
461 462 3.393089 TTTCTCAGAGAGTGCAGAACC 57.607 47.619 0.00 0.00 0.00 3.62
462 463 4.210955 CAGTTTTCTCAGAGAGTGCAGAAC 59.789 45.833 0.00 1.59 0.00 3.01
474 475 5.532406 TGATCCTTCCAAACAGTTTTCTCAG 59.468 40.000 0.00 0.00 0.00 3.35
486 487 5.246981 ACTGAATCTGTGATCCTTCCAAA 57.753 39.130 0.00 0.00 0.00 3.28
513 515 6.195983 CGCAGAAATTGAGCTGTAAATTCATC 59.804 38.462 0.00 0.00 34.66 2.92
536 539 4.640956 CTTGGCTGAAAAATAAATTGCGC 58.359 39.130 0.00 0.00 0.00 6.09
538 541 5.409214 TCTGCTTGGCTGAAAAATAAATTGC 59.591 36.000 0.00 0.00 33.82 3.56
548 551 0.599558 GCACATCTGCTTGGCTGAAA 59.400 50.000 3.49 0.00 39.70 2.69
559 568 7.584108 TGTGATGTAAAAGTAAAGCACATCTG 58.416 34.615 12.63 0.00 43.70 2.90
597 612 3.667497 ATATGCCTGTACCATCAGTCG 57.333 47.619 0.00 0.00 34.02 4.18
686 711 2.109387 GCACACACACCACCCGTA 59.891 61.111 0.00 0.00 0.00 4.02
823 848 0.783850 ATGGCCACAAACTAAGGGGT 59.216 50.000 8.16 0.00 0.00 4.95
939 966 3.082055 GGGGAAGAGGGACCGGAC 61.082 72.222 9.46 0.00 0.00 4.79
958 985 3.943137 CTGCTAGGGGTGGGGGTGA 62.943 68.421 0.00 0.00 0.00 4.02
1163 1203 2.144738 ACGCCTTGTGGGTACTGGT 61.145 57.895 0.00 0.00 38.56 4.00
1164 1204 1.671054 CACGCCTTGTGGGTACTGG 60.671 63.158 0.00 0.00 45.21 4.00
1165 1205 3.966215 CACGCCTTGTGGGTACTG 58.034 61.111 0.00 0.00 45.21 2.74
1201 1241 2.837947 TGATGATGAAGAGTCCCCACT 58.162 47.619 0.00 0.00 34.57 4.00
1203 1243 3.181462 CGATTGATGATGAAGAGTCCCCA 60.181 47.826 0.00 0.00 0.00 4.96
1206 1246 5.111989 TGAACGATTGATGATGAAGAGTCC 58.888 41.667 0.00 0.00 0.00 3.85
1208 1248 7.495901 ACTATGAACGATTGATGATGAAGAGT 58.504 34.615 0.00 0.00 0.00 3.24
1209 1249 7.943413 ACTATGAACGATTGATGATGAAGAG 57.057 36.000 0.00 0.00 0.00 2.85
1212 1252 7.225341 CCAGAACTATGAACGATTGATGATGAA 59.775 37.037 0.00 0.00 0.00 2.57
1215 1255 6.703607 GTCCAGAACTATGAACGATTGATGAT 59.296 38.462 0.00 0.00 0.00 2.45
1246 1298 0.819259 TTTGGTGTCAGCAGAGGCAC 60.819 55.000 4.68 0.58 44.61 5.01
1287 1339 4.570874 GATCCAAGGCCGCCTCCC 62.571 72.222 13.72 0.00 30.89 4.30
1431 1483 4.942761 ACTGAACCAAGCATGAAACAAT 57.057 36.364 0.00 0.00 0.00 2.71
1445 1497 5.147162 CGCAAACAGAGAAAATACTGAACC 58.853 41.667 0.00 0.00 37.54 3.62
1468 1537 2.004583 TAACACAGACATACAGCGCC 57.995 50.000 2.29 0.00 0.00 6.53
1477 1546 5.352293 CAGATAGCAAGCAATAACACAGACA 59.648 40.000 0.00 0.00 0.00 3.41
1490 1559 3.605692 GCTTAACATCGCAGATAGCAAGC 60.606 47.826 0.00 10.91 45.12 4.01
1502 1573 1.324736 GCAAGGACGAGCTTAACATCG 59.675 52.381 0.00 3.61 44.36 3.84
1504 1575 2.472695 TGCAAGGACGAGCTTAACAT 57.527 45.000 0.00 0.00 0.00 2.71
1512 1593 3.372206 CCTGTAAAAGATGCAAGGACGAG 59.628 47.826 0.00 0.00 0.00 4.18
1517 1598 5.464168 CAACTTCCTGTAAAAGATGCAAGG 58.536 41.667 0.00 0.00 0.00 3.61
1812 2171 5.700832 TCTCACTCAATGCGTTCAAATTAGT 59.299 36.000 0.00 0.00 0.00 2.24
1824 2183 5.026462 CGACATTCAAATCTCACTCAATGC 58.974 41.667 0.00 0.00 0.00 3.56
1896 2319 6.399880 GCAAACCAAAAATGACATCGTGTATG 60.400 38.462 0.00 0.00 41.74 2.39
1997 2429 5.882557 ACATTCAAATATCCCTCAGTGTGTC 59.117 40.000 0.00 0.00 0.00 3.67
1999 2431 5.882000 TGACATTCAAATATCCCTCAGTGTG 59.118 40.000 0.00 0.00 0.00 3.82
2003 2435 6.015688 CCCAATGACATTCAAATATCCCTCAG 60.016 42.308 0.00 0.00 0.00 3.35
2005 2437 5.279156 GCCCAATGACATTCAAATATCCCTC 60.279 44.000 0.00 0.00 0.00 4.30
2011 2443 3.132646 GCAGGCCCAATGACATTCAAATA 59.867 43.478 0.00 0.00 0.00 1.40
2151 2588 5.360591 GGTTCGAGTTTCTATCATCATGGT 58.639 41.667 0.00 0.00 0.00 3.55
2170 2607 1.878953 TTTCTTCTCTGTGCCGGTTC 58.121 50.000 1.90 0.00 0.00 3.62
2281 2753 4.876125 TGCATTGTTTCTATCCGCAAAAA 58.124 34.783 0.00 0.00 0.00 1.94
2282 2754 4.511617 TGCATTGTTTCTATCCGCAAAA 57.488 36.364 0.00 0.00 0.00 2.44
2283 2755 4.157472 TGATGCATTGTTTCTATCCGCAAA 59.843 37.500 0.00 0.00 0.00 3.68
2284 2756 3.693578 TGATGCATTGTTTCTATCCGCAA 59.306 39.130 0.00 0.00 0.00 4.85
2285 2757 3.277715 TGATGCATTGTTTCTATCCGCA 58.722 40.909 0.00 0.00 0.00 5.69
2286 2758 3.969117 TGATGCATTGTTTCTATCCGC 57.031 42.857 0.00 0.00 0.00 5.54
2287 2759 4.516321 TCCATGATGCATTGTTTCTATCCG 59.484 41.667 0.00 0.00 0.00 4.18
2288 2760 6.395426 TTCCATGATGCATTGTTTCTATCC 57.605 37.500 0.00 0.00 0.00 2.59
2289 2761 8.882415 ATTTTCCATGATGCATTGTTTCTATC 57.118 30.769 0.00 0.00 0.00 2.08
2290 2762 8.479689 TGATTTTCCATGATGCATTGTTTCTAT 58.520 29.630 0.00 0.00 0.00 1.98
2291 2763 7.838884 TGATTTTCCATGATGCATTGTTTCTA 58.161 30.769 0.00 0.00 0.00 2.10
2292 2764 6.703319 TGATTTTCCATGATGCATTGTTTCT 58.297 32.000 0.00 0.00 0.00 2.52
2323 2795 4.902443 TGAACTTCTATAGCTCTGGTCG 57.098 45.455 0.00 0.00 0.00 4.79
2416 2888 7.607223 CCCATTTTTGTGTTTCACCATGATAAT 59.393 33.333 0.00 0.00 32.73 1.28
2417 2889 6.933521 CCCATTTTTGTGTTTCACCATGATAA 59.066 34.615 0.00 0.00 32.73 1.75
2536 3016 2.223688 TGGTTTCATCCACGCACAAAAG 60.224 45.455 0.00 0.00 31.96 2.27
2575 3057 2.630889 TGTCTTCCTCCTCACTCCAT 57.369 50.000 0.00 0.00 0.00 3.41
2750 3232 2.357569 GCAGAAGGGTCCCAGATTTGAT 60.358 50.000 11.55 0.00 0.00 2.57
2751 3233 1.004745 GCAGAAGGGTCCCAGATTTGA 59.995 52.381 11.55 0.00 0.00 2.69
2941 3423 3.118629 TGTCATCTGTGCTGAATAGTCCC 60.119 47.826 0.00 0.00 0.00 4.46
2987 3469 5.854010 TCATCACATGTAGGGACTAGAAC 57.146 43.478 0.00 0.00 44.14 3.01
3182 3694 5.449588 GCGATGATCCAGATTCAATGTTTGT 60.450 40.000 0.00 0.00 0.00 2.83
3207 3719 1.479323 GACCTACCGCTGTCACCAATA 59.521 52.381 0.00 0.00 0.00 1.90
3904 4470 3.243569 CCGGAGTTCAGATGTCCTATGTC 60.244 52.174 0.00 0.00 0.00 3.06
3919 4485 4.251268 GTTGTATTACTTGAGCCGGAGTT 58.749 43.478 5.05 0.00 0.00 3.01
3920 4486 3.369157 GGTTGTATTACTTGAGCCGGAGT 60.369 47.826 5.05 1.15 0.00 3.85
3924 4490 4.634004 TGAATGGTTGTATTACTTGAGCCG 59.366 41.667 0.00 0.00 0.00 5.52
3951 4517 7.148755 CGAAATTTCCTGGATCAATTGAACAAC 60.149 37.037 13.09 3.86 0.00 3.32
4079 4649 9.706691 TTACCAACAGAAACTAAAGTATCTCAG 57.293 33.333 0.00 0.00 0.00 3.35
4082 4652 8.947115 GCATTACCAACAGAAACTAAAGTATCT 58.053 33.333 0.00 0.00 0.00 1.98
4090 4660 7.655328 CCAAATTTGCATTACCAACAGAAACTA 59.345 33.333 12.92 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.