Multiple sequence alignment - TraesCS7B01G020500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G020500 chr7B 100.000 8246 0 0 1 8246 18104443 18096198 0.000000e+00 15228.0
1 TraesCS7B01G020500 chr7B 98.119 1063 18 1 2226 3286 477782417 477781355 0.000000e+00 1851.0
2 TraesCS7B01G020500 chr7B 91.000 900 78 3 6386 7282 17843148 17842249 0.000000e+00 1210.0
3 TraesCS7B01G020500 chr7B 89.935 924 82 6 6385 7301 17665987 17666906 0.000000e+00 1181.0
4 TraesCS7B01G020500 chr7B 90.847 590 53 1 1543 2131 17847002 17846413 0.000000e+00 789.0
5 TraesCS7B01G020500 chr7B 90.169 590 53 5 1543 2129 17662906 17663493 0.000000e+00 763.0
6 TraesCS7B01G020500 chr7B 92.667 300 15 2 7434 7732 18082639 18082346 7.650000e-115 425.0
7 TraesCS7B01G020500 chr7B 86.066 366 39 9 454 812 716701070 716701430 4.670000e-102 383.0
8 TraesCS7B01G020500 chr7B 85.637 369 40 10 454 815 716976148 716975786 7.810000e-100 375.0
9 TraesCS7B01G020500 chr7B 82.569 436 56 13 1000 1416 17662402 17662836 4.700000e-97 366.0
10 TraesCS7B01G020500 chr7B 82.488 434 54 14 1000 1416 17847497 17847069 2.190000e-95 361.0
11 TraesCS7B01G020500 chr7B 85.971 278 33 5 7434 7708 283398137 283398411 8.100000e-75 292.0
12 TraesCS7B01G020500 chr7B 95.455 66 1 2 5804 5869 48470292 48470229 4.070000e-18 104.0
13 TraesCS7B01G020500 chr7D 93.613 1597 70 23 5856 7433 74582699 74581116 0.000000e+00 2355.0
14 TraesCS7B01G020500 chr7D 91.287 1515 76 29 1 1466 74588669 74587162 0.000000e+00 2015.0
15 TraesCS7B01G020500 chr7D 90.758 963 79 5 6385 7340 74447455 74446496 0.000000e+00 1277.0
16 TraesCS7B01G020500 chr7D 90.576 955 72 9 6385 7332 74421571 74422514 0.000000e+00 1249.0
17 TraesCS7B01G020500 chr7D 88.889 936 69 14 4891 5808 74583612 74582694 0.000000e+00 1120.0
18 TraesCS7B01G020500 chr7D 93.118 712 41 2 1514 2225 74587143 74586440 0.000000e+00 1037.0
19 TraesCS7B01G020500 chr7D 86.992 738 64 14 3642 4349 74585912 74585177 0.000000e+00 802.0
20 TraesCS7B01G020500 chr7D 90.256 585 54 2 1550 2131 74452176 74451592 0.000000e+00 761.0
21 TraesCS7B01G020500 chr7D 91.762 522 42 1 1543 2064 74417859 74418379 0.000000e+00 725.0
22 TraesCS7B01G020500 chr7D 83.871 434 48 15 1000 1416 74452676 74452248 2.160000e-105 394.0
23 TraesCS7B01G020500 chr7D 83.333 414 51 13 1020 1421 74417384 74417791 4.700000e-97 366.0
24 TraesCS7B01G020500 chr7D 90.854 164 4 9 7274 7433 74430797 74430641 8.390000e-50 209.0
25 TraesCS7B01G020500 chr7D 84.925 199 26 3 3415 3612 74586104 74585909 1.820000e-46 198.0
26 TraesCS7B01G020500 chr7D 86.047 86 10 2 5714 5797 74582454 74582369 3.170000e-14 91.6
27 TraesCS7B01G020500 chr7D 91.228 57 3 1 5805 5859 288464903 288464847 8.870000e-10 76.8
28 TraesCS7B01G020500 chr1A 98.865 1057 12 0 2226 3282 441795418 441796474 0.000000e+00 1886.0
29 TraesCS7B01G020500 chr1A 98.013 1057 20 1 2226 3282 182074805 182073750 0.000000e+00 1834.0
30 TraesCS7B01G020500 chr1A 86.364 352 40 5 459 807 554242251 554241905 2.170000e-100 377.0
31 TraesCS7B01G020500 chr1A 95.745 47 1 1 5826 5872 366288245 366288200 3.190000e-09 75.0
32 TraesCS7B01G020500 chr1A 85.135 74 4 4 5795 5863 497886671 497886600 1.490000e-07 69.4
33 TraesCS7B01G020500 chr4B 98.581 1057 15 0 2226 3282 519387325 519386269 0.000000e+00 1869.0
34 TraesCS7B01G020500 chr4B 87.257 824 91 8 7434 8246 460600167 460599347 0.000000e+00 928.0
35 TraesCS7B01G020500 chr4B 86.111 288 35 4 7434 7719 460569637 460569353 1.040000e-78 305.0
36 TraesCS7B01G020500 chr4B 93.878 49 1 2 5821 5868 136939828 136939781 1.150000e-08 73.1
37 TraesCS7B01G020500 chr4B 93.878 49 1 2 5821 5868 278295763 278295716 1.150000e-08 73.1
38 TraesCS7B01G020500 chr4B 92.157 51 2 2 5821 5871 661642436 661642388 4.130000e-08 71.3
39 TraesCS7B01G020500 chr3A 98.395 1059 17 0 2224 3282 499681346 499682404 0.000000e+00 1862.0
40 TraesCS7B01G020500 chr2B 97.848 1069 22 1 2216 3283 387150956 387152024 0.000000e+00 1845.0
41 TraesCS7B01G020500 chr1B 97.932 1064 21 1 2221 3284 579935726 579936788 0.000000e+00 1842.0
42 TraesCS7B01G020500 chr1B 89.041 73 5 3 5793 5863 263559790 263559719 4.100000e-13 87.9
43 TraesCS7B01G020500 chr5B 97.572 1071 23 3 2217 3286 424338434 424337366 0.000000e+00 1831.0
44 TraesCS7B01G020500 chr5B 80.978 736 109 15 7539 8246 187209169 187208437 9.350000e-154 555.0
45 TraesCS7B01G020500 chr5B 79.710 276 49 5 7434 7708 445213311 445213580 8.450000e-45 193.0
46 TraesCS7B01G020500 chr5B 88.889 63 3 2 5803 5862 704836876 704836815 3.190000e-09 75.0
47 TraesCS7B01G020500 chr4A 97.824 1057 22 1 2226 3282 657990176 657989121 0.000000e+00 1823.0
48 TraesCS7B01G020500 chr7A 88.407 1337 109 17 4469 5790 78466961 78465656 0.000000e+00 1568.0
49 TraesCS7B01G020500 chr7A 92.759 1091 59 13 6358 7433 78464815 78463730 0.000000e+00 1559.0
50 TraesCS7B01G020500 chr7A 93.935 676 41 0 1550 2225 78468984 78468309 0.000000e+00 1022.0
51 TraesCS7B01G020500 chr7A 91.317 691 60 0 6428 7118 78459135 78459825 0.000000e+00 944.0
52 TraesCS7B01G020500 chr7A 82.428 1104 105 35 3415 4473 78468047 78466988 0.000000e+00 881.0
53 TraesCS7B01G020500 chr7A 91.379 580 50 0 1547 2126 78452938 78453517 0.000000e+00 795.0
54 TraesCS7B01G020500 chr7A 90.397 479 35 6 943 1416 78469524 78469052 3.270000e-173 619.0
55 TraesCS7B01G020500 chr7A 85.996 507 49 16 5858 6352 78465636 78465140 2.640000e-144 523.0
56 TraesCS7B01G020500 chr7A 85.870 368 36 13 454 812 543430054 543430414 2.170000e-100 377.0
57 TraesCS7B01G020500 chr7A 83.575 414 49 12 1020 1421 78452456 78452862 3.640000e-98 370.0
58 TraesCS7B01G020500 chr7A 88.104 269 17 9 171 428 78469902 78469638 1.040000e-78 305.0
59 TraesCS7B01G020500 chr5A 87.015 824 95 11 7426 8246 480570997 480570183 0.000000e+00 918.0
60 TraesCS7B01G020500 chr5A 86.255 793 98 9 7457 8246 10959506 10960290 0.000000e+00 850.0
61 TraesCS7B01G020500 chr5A 90.625 64 5 1 5798 5861 129273671 129273609 5.300000e-12 84.2
62 TraesCS7B01G020500 chr5A 91.667 60 4 1 5801 5859 599218318 599218259 1.910000e-11 82.4
63 TraesCS7B01G020500 chr4D 85.592 819 109 6 7430 8246 456284131 456284942 0.000000e+00 850.0
64 TraesCS7B01G020500 chr4D 84.365 307 38 7 7434 7737 456289181 456289480 8.100000e-75 292.0
65 TraesCS7B01G020500 chr4D 91.176 68 5 1 5799 5866 10484878 10484944 3.170000e-14 91.6
66 TraesCS7B01G020500 chr5D 86.020 794 100 8 7457 8246 426674744 426675530 0.000000e+00 841.0
67 TraesCS7B01G020500 chr5D 85.612 278 29 9 7457 7730 426698576 426698846 1.750000e-71 281.0
68 TraesCS7B01G020500 chr5D 87.500 64 2 1 5803 5860 524501737 524501674 1.490000e-07 69.4
69 TraesCS7B01G020500 chr5D 81.579 76 9 5 5821 5896 558068104 558068034 3.210000e-04 58.4
70 TraesCS7B01G020500 chr1D 85.399 815 105 10 7434 8244 113869731 113868927 0.000000e+00 833.0
71 TraesCS7B01G020500 chr1D 86.685 368 33 12 454 817 483975967 483976322 2.160000e-105 394.0
72 TraesCS7B01G020500 chr1D 85.714 280 28 8 7434 7710 113864682 113864412 1.350000e-72 285.0
73 TraesCS7B01G020500 chr1D 91.379 58 1 1 5805 5862 465402117 465402170 8.870000e-10 76.8
74 TraesCS7B01G020500 chr1D 93.878 49 0 3 5822 5870 8284268 8284313 4.130000e-08 71.3
75 TraesCS7B01G020500 chr1D 86.154 65 2 2 5805 5862 309090204 309090140 6.910000e-06 63.9
76 TraesCS7B01G020500 chr6B 82.909 825 123 11 7434 8246 272735072 272735890 0.000000e+00 726.0
77 TraesCS7B01G020500 chr3D 88.579 359 31 7 459 812 454744169 454744522 2.130000e-115 427.0
78 TraesCS7B01G020500 chr3D 92.308 52 2 2 5826 5876 45429530 45429480 1.150000e-08 73.1
79 TraesCS7B01G020500 chr3D 95.652 46 1 1 5823 5868 532868824 532868868 1.150000e-08 73.1
80 TraesCS7B01G020500 chr3D 83.562 73 5 1 5795 5860 321889060 321889132 2.490000e-05 62.1
81 TraesCS7B01G020500 chr3D 92.857 42 1 2 5823 5863 585418862 585418902 8.940000e-05 60.2
82 TraesCS7B01G020500 chrUn 85.427 398 46 8 454 845 294376802 294376411 3.580000e-108 403.0
83 TraesCS7B01G020500 chrUn 85.213 399 44 8 454 842 61736675 61736282 6.000000e-106 396.0
84 TraesCS7B01G020500 chrUn 93.617 47 2 1 5821 5867 101670992 101671037 1.490000e-07 69.4
85 TraesCS7B01G020500 chrUn 93.617 47 2 1 5821 5867 110732004 110731959 1.490000e-07 69.4
86 TraesCS7B01G020500 chrUn 93.617 47 2 1 5821 5867 232649860 232649815 1.490000e-07 69.4
87 TraesCS7B01G020500 chrUn 97.500 40 0 1 5826 5865 96524722 96524684 5.340000e-07 67.6
88 TraesCS7B01G020500 chrUn 95.238 42 1 1 5826 5867 335557701 335557741 1.920000e-06 65.8
89 TraesCS7B01G020500 chrUn 93.333 45 1 2 5821 5864 350272986 350272943 1.920000e-06 65.8
90 TraesCS7B01G020500 chrUn 93.333 45 1 2 5821 5864 463419421 463419378 1.920000e-06 65.8
91 TraesCS7B01G020500 chrUn 97.368 38 0 1 5826 5863 132121180 132121144 6.910000e-06 63.9
92 TraesCS7B01G020500 chrUn 91.489 47 3 1 5821 5867 236529700 236529745 6.910000e-06 63.9
93 TraesCS7B01G020500 chrUn 91.489 47 3 1 5821 5867 286758621 286758666 6.910000e-06 63.9
94 TraesCS7B01G020500 chrUn 91.489 47 3 1 5821 5867 340366164 340366209 6.910000e-06 63.9
95 TraesCS7B01G020500 chrUn 91.489 47 3 1 5821 5867 340368707 340368752 6.910000e-06 63.9
96 TraesCS7B01G020500 chrUn 85.075 67 3 4 5803 5862 208673154 208673220 2.490000e-05 62.1
97 TraesCS7B01G020500 chrUn 85.075 67 3 4 5803 5862 256172817 256172883 2.490000e-05 62.1
98 TraesCS7B01G020500 chrUn 85.075 67 3 4 5803 5862 277637054 277636988 2.490000e-05 62.1
99 TraesCS7B01G020500 chrUn 85.075 67 3 4 5803 5862 336088304 336088370 2.490000e-05 62.1
100 TraesCS7B01G020500 chrUn 85.075 67 3 4 5803 5862 362373571 362373505 2.490000e-05 62.1
101 TraesCS7B01G020500 chrUn 85.075 67 3 4 5803 5862 373720208 373720142 2.490000e-05 62.1
102 TraesCS7B01G020500 chrUn 85.075 67 3 4 5803 5862 382756031 382755965 2.490000e-05 62.1
103 TraesCS7B01G020500 chr2D 86.885 61 4 4 5826 5885 555221134 555221077 1.920000e-06 65.8
104 TraesCS7B01G020500 chr3B 91.111 45 3 1 3475 3518 140982815 140982859 8.940000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G020500 chr7B 18096198 18104443 8245 True 15228.000000 15228 100.000000 1 8246 1 chr7B.!!$R2 8245
1 TraesCS7B01G020500 chr7B 477781355 477782417 1062 True 1851.000000 1851 98.119000 2226 3286 1 chr7B.!!$R4 1060
2 TraesCS7B01G020500 chr7B 17842249 17847497 5248 True 786.666667 1210 88.111667 1000 7282 3 chr7B.!!$R6 6282
3 TraesCS7B01G020500 chr7B 17662402 17666906 4504 False 770.000000 1181 87.557667 1000 7301 3 chr7B.!!$F3 6301
4 TraesCS7B01G020500 chr7D 74446496 74447455 959 True 1277.000000 1277 90.758000 6385 7340 1 chr7D.!!$R2 955
5 TraesCS7B01G020500 chr7D 74581116 74588669 7553 True 1088.371429 2355 89.267286 1 7433 7 chr7D.!!$R5 7432
6 TraesCS7B01G020500 chr7D 74417384 74422514 5130 False 780.000000 1249 88.557000 1020 7332 3 chr7D.!!$F1 6312
7 TraesCS7B01G020500 chr7D 74451592 74452676 1084 True 577.500000 761 87.063500 1000 2131 2 chr7D.!!$R4 1131
8 TraesCS7B01G020500 chr1A 441795418 441796474 1056 False 1886.000000 1886 98.865000 2226 3282 1 chr1A.!!$F1 1056
9 TraesCS7B01G020500 chr1A 182073750 182074805 1055 True 1834.000000 1834 98.013000 2226 3282 1 chr1A.!!$R1 1056
10 TraesCS7B01G020500 chr4B 519386269 519387325 1056 True 1869.000000 1869 98.581000 2226 3282 1 chr4B.!!$R5 1056
11 TraesCS7B01G020500 chr4B 460599347 460600167 820 True 928.000000 928 87.257000 7434 8246 1 chr4B.!!$R4 812
12 TraesCS7B01G020500 chr3A 499681346 499682404 1058 False 1862.000000 1862 98.395000 2224 3282 1 chr3A.!!$F1 1058
13 TraesCS7B01G020500 chr2B 387150956 387152024 1068 False 1845.000000 1845 97.848000 2216 3283 1 chr2B.!!$F1 1067
14 TraesCS7B01G020500 chr1B 579935726 579936788 1062 False 1842.000000 1842 97.932000 2221 3284 1 chr1B.!!$F1 1063
15 TraesCS7B01G020500 chr5B 424337366 424338434 1068 True 1831.000000 1831 97.572000 2217 3286 1 chr5B.!!$R2 1069
16 TraesCS7B01G020500 chr5B 187208437 187209169 732 True 555.000000 555 80.978000 7539 8246 1 chr5B.!!$R1 707
17 TraesCS7B01G020500 chr4A 657989121 657990176 1055 True 1823.000000 1823 97.824000 2226 3282 1 chr4A.!!$R1 1056
18 TraesCS7B01G020500 chr7A 78459135 78459825 690 False 944.000000 944 91.317000 6428 7118 1 chr7A.!!$F1 690
19 TraesCS7B01G020500 chr7A 78463730 78469902 6172 True 925.285714 1568 88.860857 171 7433 7 chr7A.!!$R1 7262
20 TraesCS7B01G020500 chr7A 78452456 78453517 1061 False 582.500000 795 87.477000 1020 2126 2 chr7A.!!$F3 1106
21 TraesCS7B01G020500 chr5A 480570183 480570997 814 True 918.000000 918 87.015000 7426 8246 1 chr5A.!!$R2 820
22 TraesCS7B01G020500 chr5A 10959506 10960290 784 False 850.000000 850 86.255000 7457 8246 1 chr5A.!!$F1 789
23 TraesCS7B01G020500 chr4D 456284131 456284942 811 False 850.000000 850 85.592000 7430 8246 1 chr4D.!!$F2 816
24 TraesCS7B01G020500 chr5D 426674744 426675530 786 False 841.000000 841 86.020000 7457 8246 1 chr5D.!!$F1 789
25 TraesCS7B01G020500 chr1D 113868927 113869731 804 True 833.000000 833 85.399000 7434 8244 1 chr1D.!!$R2 810
26 TraesCS7B01G020500 chr6B 272735072 272735890 818 False 726.000000 726 82.909000 7434 8246 1 chr6B.!!$F1 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 480 0.680061 AAGCGAGAAACTTCCGGACT 59.320 50.0 1.83 0.00 0.00 3.85 F
1006 1067 0.247460 CAACAGAGACGGCATGGAGA 59.753 55.0 0.00 0.00 0.00 3.71 F
1417 1528 0.248289 CCACGTCCGTCCTGGTAATT 59.752 55.0 0.00 0.00 39.52 1.40 F
2704 2873 0.107312 CTCACAAGCATGCTAGGGCT 60.107 55.0 23.00 0.76 43.46 5.19 F
3600 4543 0.458716 GCTGACCAACTACCGAGAGC 60.459 60.0 0.00 0.00 0.00 4.09 F
4456 5747 0.110644 GAAACTGTTGCGCTCCTTCG 60.111 55.0 9.73 0.00 0.00 3.79 F
5323 8157 0.111639 GGGCAAGTTAACTCCCACCA 59.888 55.0 22.00 0.00 38.62 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 2201 0.098200 CGGTCTTGCTATCGTCGTCA 59.902 55.000 0.00 0.00 0.00 4.35 R
2221 2362 1.308998 GCAGTTATCGGGACCCAATG 58.691 55.000 12.15 1.11 0.00 2.82 R
3397 4311 0.657312 TTGTTGCACAGTCTCTTGCG 59.343 50.000 0.00 0.00 41.96 4.85 R
4437 5725 0.110644 CGAAGGAGCGCAACAGTTTC 60.111 55.000 11.47 7.71 0.00 2.78 R
5279 8113 0.482446 AGGGACATCAAGGCAAACCA 59.518 50.000 0.00 0.00 39.06 3.67 R
5628 8586 1.354705 AGGGAGTACTCTTTTTGGCCC 59.645 52.381 21.88 12.76 34.52 5.80 R
7291 11595 0.249155 CACCCAAAGCAAGCACACAG 60.249 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.262227 ACATTTGCCACTTGATATGAAATGAAT 58.738 29.630 0.00 0.00 34.75 2.57
164 166 9.569167 TTGTAAAATCGACATGAGAGTACTAAG 57.431 33.333 0.00 0.00 0.00 2.18
253 258 6.877236 AGTTGATCTTTTTGAAAAAGCAGGA 58.123 32.000 22.08 8.64 0.00 3.86
316 321 1.235948 ACGAGTCAGACGTGGACCTC 61.236 60.000 12.07 8.83 42.37 3.85
335 340 3.632604 CCTCTAACTTGCTCTCCGTGATA 59.367 47.826 0.00 0.00 0.00 2.15
395 400 3.012518 GCACCGTCTACCAGTCTAGTTA 58.987 50.000 0.00 0.00 0.00 2.24
445 471 9.680315 AGTGTGAGTATATAATAAGCGAGAAAC 57.320 33.333 0.00 0.00 0.00 2.78
446 472 9.680315 GTGTGAGTATATAATAAGCGAGAAACT 57.320 33.333 0.00 0.00 0.00 2.66
450 476 8.967552 AGTATATAATAAGCGAGAAACTTCCG 57.032 34.615 0.00 0.00 0.00 4.30
451 477 8.027771 AGTATATAATAAGCGAGAAACTTCCGG 58.972 37.037 0.00 0.00 0.00 5.14
452 478 3.604875 AATAAGCGAGAAACTTCCGGA 57.395 42.857 0.00 0.00 0.00 5.14
453 479 2.358939 TAAGCGAGAAACTTCCGGAC 57.641 50.000 1.83 0.00 0.00 4.79
454 480 0.680061 AAGCGAGAAACTTCCGGACT 59.320 50.000 1.83 0.00 0.00 3.85
471 501 5.421056 TCCGGACTGGATTGTATATACATCC 59.579 44.000 23.70 23.70 43.74 3.51
604 634 1.675552 AACCAACGTTGACTTCAGGG 58.324 50.000 29.35 12.44 0.00 4.45
605 635 0.818040 ACCAACGTTGACTTCAGGGC 60.818 55.000 29.35 0.00 0.00 5.19
606 636 1.569493 CAACGTTGACTTCAGGGCG 59.431 57.895 23.90 0.00 0.00 6.13
622 652 6.339587 TCAGGGCGAAAAGACAAAATTTAT 57.660 33.333 0.00 0.00 0.00 1.40
626 656 7.170658 CAGGGCGAAAAGACAAAATTTATTTGA 59.829 33.333 7.83 0.00 33.83 2.69
694 725 5.556006 TTCTTAAAAGAAGTCGAAGGGGA 57.444 39.130 1.00 0.00 39.95 4.81
711 742 4.416516 AGGGGAATTTTCTTTTCGTGGAT 58.583 39.130 0.00 0.00 0.00 3.41
736 767 7.697352 TTTTTCTCACAAGTACAATGCAATG 57.303 32.000 0.00 0.00 0.00 2.82
749 780 9.410556 AGTACAATGCAATGTCAAGTTTATTTC 57.589 29.630 11.47 0.00 34.75 2.17
753 784 9.588774 CAATGCAATGTCAAGTTTATTTCAAAG 57.411 29.630 0.00 0.00 0.00 2.77
869 906 1.805871 GCTTGCTAGCTAGTGCCTCAG 60.806 57.143 24.01 9.79 44.27 3.35
907 944 1.267261 ACACAGTAGTCGCACTCACTC 59.733 52.381 0.00 0.00 0.00 3.51
1006 1067 0.247460 CAACAGAGACGGCATGGAGA 59.753 55.000 0.00 0.00 0.00 3.71
1134 1209 1.073897 AGGTTTGTGCCTCAGCTCC 59.926 57.895 0.00 0.00 40.80 4.70
1151 1226 2.419297 GCTCCCTGATGATCACGAGTTT 60.419 50.000 13.41 0.00 0.00 2.66
1417 1528 0.248289 CCACGTCCGTCCTGGTAATT 59.752 55.000 0.00 0.00 39.52 1.40
1419 1530 2.094078 CCACGTCCGTCCTGGTAATTAA 60.094 50.000 0.00 0.00 39.52 1.40
1420 1531 3.184541 CACGTCCGTCCTGGTAATTAAG 58.815 50.000 0.00 0.00 39.52 1.85
1441 1559 2.029020 GCCACCAACTTCCTTCCAAATC 60.029 50.000 0.00 0.00 0.00 2.17
1445 1563 5.291971 CACCAACTTCCTTCCAAATCAAAG 58.708 41.667 0.00 0.00 0.00 2.77
1499 1619 4.689094 GCACATGCATATATCTCGATCG 57.311 45.455 9.36 9.36 41.59 3.69
1500 1620 3.488678 GCACATGCATATATCTCGATCGG 59.511 47.826 16.41 6.26 41.59 4.18
1501 1621 4.676546 CACATGCATATATCTCGATCGGT 58.323 43.478 16.41 4.57 0.00 4.69
1502 1622 4.501921 CACATGCATATATCTCGATCGGTG 59.498 45.833 16.41 8.93 0.00 4.94
1503 1623 4.158579 ACATGCATATATCTCGATCGGTGT 59.841 41.667 16.41 3.82 0.00 4.16
1504 1624 4.783764 TGCATATATCTCGATCGGTGTT 57.216 40.909 16.41 6.56 0.00 3.32
1505 1625 5.134202 TGCATATATCTCGATCGGTGTTT 57.866 39.130 16.41 0.71 0.00 2.83
1506 1626 4.923281 TGCATATATCTCGATCGGTGTTTG 59.077 41.667 16.41 6.20 0.00 2.93
1507 1627 4.923871 GCATATATCTCGATCGGTGTTTGT 59.076 41.667 16.41 0.00 0.00 2.83
1508 1628 5.164051 GCATATATCTCGATCGGTGTTTGTG 60.164 44.000 16.41 8.63 0.00 3.33
1509 1629 2.743636 ATCTCGATCGGTGTTTGTGT 57.256 45.000 16.41 0.00 0.00 3.72
1510 1630 2.060326 TCTCGATCGGTGTTTGTGTC 57.940 50.000 16.41 0.00 0.00 3.67
1511 1631 0.708370 CTCGATCGGTGTTTGTGTCG 59.292 55.000 16.41 0.00 0.00 4.35
1512 1632 0.311477 TCGATCGGTGTTTGTGTCGA 59.689 50.000 16.41 0.00 35.97 4.20
1513 1633 0.433492 CGATCGGTGTTTGTGTCGAC 59.567 55.000 9.11 9.11 34.40 4.20
1514 1634 1.493772 GATCGGTGTTTGTGTCGACA 58.506 50.000 15.76 15.76 34.40 4.35
1515 1635 2.066262 GATCGGTGTTTGTGTCGACAT 58.934 47.619 23.12 0.31 34.40 3.06
1516 1636 1.493772 TCGGTGTTTGTGTCGACATC 58.506 50.000 23.12 15.44 30.13 3.06
1727 1865 2.030562 CGGTTCAACCAGGCGACT 59.969 61.111 7.52 0.00 46.44 4.18
2009 2147 1.592223 CGCGAGGAAGAGGAAGGTT 59.408 57.895 0.00 0.00 0.00 3.50
2045 2186 3.118371 CGGGGGAGCTGAAGTTTTACTAT 60.118 47.826 0.00 0.00 0.00 2.12
2131 2272 7.746475 CGACAGCTTTAGGTAAGAAAAGATTTG 59.254 37.037 0.00 0.00 35.19 2.32
2210 2351 9.624037 AATAGTTATATAATCCACCCCACTACA 57.376 33.333 0.00 0.00 0.00 2.74
2221 2362 4.881850 CCACCCCACTACATCAGAAATTAC 59.118 45.833 0.00 0.00 0.00 1.89
2376 2518 0.905357 CTCCCGAACCCTCTCACATT 59.095 55.000 0.00 0.00 0.00 2.71
2553 2695 1.070914 TGAACTACGGTTGCCATGTCA 59.929 47.619 0.00 0.00 35.58 3.58
2704 2873 0.107312 CTCACAAGCATGCTAGGGCT 60.107 55.000 23.00 0.76 43.46 5.19
3099 3270 4.922026 GAACGCCCACACACCGGT 62.922 66.667 0.00 0.00 0.00 5.28
3201 3372 3.198068 TCAGCTAATTCGTGCCAAGATC 58.802 45.455 0.00 0.00 0.00 2.75
3202 3373 3.118629 TCAGCTAATTCGTGCCAAGATCT 60.119 43.478 0.00 0.00 0.00 2.75
3265 3436 3.146783 GCTAATGCCCACACGTGTA 57.853 52.632 22.90 6.04 0.00 2.90
3286 3457 4.870221 AGGCGTTAACATTTCCGATTAC 57.130 40.909 6.39 0.00 0.00 1.89
3287 3458 4.255301 AGGCGTTAACATTTCCGATTACA 58.745 39.130 6.39 0.00 0.00 2.41
3288 3459 4.879545 AGGCGTTAACATTTCCGATTACAT 59.120 37.500 6.39 0.00 0.00 2.29
3289 3460 5.355910 AGGCGTTAACATTTCCGATTACATT 59.644 36.000 6.39 0.00 0.00 2.71
3347 4257 4.731000 TGCAAATAGTTTTTCACGAACACG 59.269 37.500 0.00 0.00 0.00 4.49
3373 4287 6.127647 TGCAATAATTCACCTCAATGAAGACC 60.128 38.462 0.00 0.00 41.76 3.85
3378 4292 5.762179 TTCACCTCAATGAAGACCTACAT 57.238 39.130 0.00 0.00 33.62 2.29
3389 4303 9.006839 CAATGAAGACCTACATGCACATAATAT 57.993 33.333 0.00 0.00 0.00 1.28
3392 4306 8.210265 TGAAGACCTACATGCACATAATATTCA 58.790 33.333 0.00 0.00 0.00 2.57
3394 4308 6.652481 AGACCTACATGCACATAATATTCAGC 59.348 38.462 0.00 0.00 0.00 4.26
3397 4311 7.120285 ACCTACATGCACATAATATTCAGCATC 59.880 37.037 11.54 0.00 40.38 3.91
3402 4316 4.849926 GCACATAATATTCAGCATCGCAAG 59.150 41.667 0.00 0.00 0.00 4.01
3435 4356 6.398935 GCAACAAATCTTAACATTGACGAAGC 60.399 38.462 0.00 0.00 0.00 3.86
3445 4388 3.056328 GACGAAGCCCCCACAAGC 61.056 66.667 0.00 0.00 0.00 4.01
3449 4392 4.912395 AAGCCCCCACAAGCGCAA 62.912 61.111 11.47 0.00 0.00 4.85
3464 4407 1.348538 CGCAACACGGTCGATAGCAA 61.349 55.000 0.00 0.00 38.44 3.91
3471 4414 2.535984 CACGGTCGATAGCAAATCACTC 59.464 50.000 0.00 0.00 0.00 3.51
3478 4421 6.209361 GTCGATAGCAAATCACTCATCACTA 58.791 40.000 0.00 0.00 0.00 2.74
3593 4536 4.156008 CACCATAAAAGGCTGACCAACTAC 59.844 45.833 0.00 0.00 39.06 2.73
3594 4537 3.694566 CCATAAAAGGCTGACCAACTACC 59.305 47.826 0.00 0.00 39.06 3.18
3600 4543 0.458716 GCTGACCAACTACCGAGAGC 60.459 60.000 0.00 0.00 0.00 4.09
3624 4567 2.778659 GTGCAGCTCACGATGATTTTC 58.221 47.619 0.00 0.00 35.76 2.29
3626 4569 2.417586 TGCAGCTCACGATGATTTTCTG 59.582 45.455 0.00 0.00 0.00 3.02
3628 4571 3.120060 GCAGCTCACGATGATTTTCTGTT 60.120 43.478 0.00 0.00 0.00 3.16
3629 4572 4.400845 CAGCTCACGATGATTTTCTGTTG 58.599 43.478 0.00 0.00 0.00 3.33
3632 4592 5.700832 AGCTCACGATGATTTTCTGTTGTTA 59.299 36.000 0.00 0.00 0.00 2.41
3682 4642 3.372954 CCATCCTCGATCGAGTAACAAC 58.627 50.000 35.85 0.00 40.44 3.32
3761 4730 0.530650 AGGCCACGATCATAAGCACG 60.531 55.000 5.01 0.00 0.00 5.34
3798 5013 6.238648 GCTAAAATCATACCAACCGTGCTTAT 60.239 38.462 0.00 0.00 0.00 1.73
3828 5051 3.368843 CGGGCATCTAGCTAGCATATGTT 60.369 47.826 18.83 0.08 44.79 2.71
3846 5069 3.415212 TGTTCCTGCCATCTTTTCTGAG 58.585 45.455 0.00 0.00 0.00 3.35
3912 5139 2.406616 AACCGATGGCGCACAATCC 61.407 57.895 10.83 0.00 35.83 3.01
3934 5161 3.863543 CGATTGCGCGCATGGACA 61.864 61.111 36.83 20.88 0.00 4.02
3956 5183 1.695242 TGTTGGATCGTACACAACCCT 59.305 47.619 13.63 0.00 42.75 4.34
3967 5194 1.032014 CACAACCCTGACACCTTTGG 58.968 55.000 0.00 0.00 0.00 3.28
4009 5266 6.049149 ACCACGTCCACTCAGAATATTAATG 58.951 40.000 0.00 0.00 0.00 1.90
4018 5275 8.408601 CCACTCAGAATATTAATGTTTCCTTGG 58.591 37.037 0.00 0.00 0.00 3.61
4067 5334 0.821517 TCCGTCCGACAGCACAATAT 59.178 50.000 0.00 0.00 0.00 1.28
4077 5344 6.992123 TCCGACAGCACAATATTTGAGAATAT 59.008 34.615 0.00 0.00 39.55 1.28
4104 5371 4.795469 TGTCAGATATAAGTACCCGTGGA 58.205 43.478 0.00 0.00 0.00 4.02
4111 5378 0.828677 AAGTACCCGTGGAGCCATAC 59.171 55.000 0.00 0.00 0.00 2.39
4123 5390 2.614057 GGAGCCATACCTTTCAACATCG 59.386 50.000 0.00 0.00 0.00 3.84
4146 5413 5.368989 GGTGGAGAACATTTATCCTCGATT 58.631 41.667 1.54 0.00 34.04 3.34
4172 5445 6.859420 AATACTTTTGCCCATGAAAACAAC 57.141 33.333 0.00 0.00 0.00 3.32
4274 5560 5.414454 CCCTCTATCAATACCTTCTCTCTCG 59.586 48.000 0.00 0.00 0.00 4.04
4277 5563 5.998981 TCTATCAATACCTTCTCTCTCGTCC 59.001 44.000 0.00 0.00 0.00 4.79
4278 5564 3.288964 TCAATACCTTCTCTCTCGTCCC 58.711 50.000 0.00 0.00 0.00 4.46
4284 5570 2.799814 TTCTCTCTCGTCCCGCGACT 62.800 60.000 8.23 0.00 45.68 4.18
4288 5574 3.432588 CTCGTCCCGCGACTCACT 61.433 66.667 8.23 0.00 45.68 3.41
4300 5588 1.663695 GACTCACTCTCTCTCCTCCG 58.336 60.000 0.00 0.00 0.00 4.63
4347 5635 3.813724 CCTCCCTGGCCATGGTCC 61.814 72.222 24.62 15.66 0.00 4.46
4349 5637 3.016971 TCCCTGGCCATGGTCCTG 61.017 66.667 24.62 17.56 0.00 3.86
4350 5638 3.016971 CCCTGGCCATGGTCCTGA 61.017 66.667 24.09 4.49 0.00 3.86
4352 5640 2.304056 CCTGGCCATGGTCCTGAGT 61.304 63.158 24.09 0.00 0.00 3.41
4381 5669 2.224159 ATGCACCCACTCCGACCTT 61.224 57.895 0.00 0.00 0.00 3.50
4416 5704 5.967674 CCGATGAGGATTTTCTTTGATTTCG 59.032 40.000 0.00 0.00 45.00 3.46
4437 5725 2.826428 CATCTTCCACATCGTACCTGG 58.174 52.381 0.00 0.00 0.00 4.45
4439 5727 2.531771 TCTTCCACATCGTACCTGGAA 58.468 47.619 0.00 8.10 40.97 3.53
4444 5732 2.289444 CCACATCGTACCTGGAAACTGT 60.289 50.000 0.00 0.00 0.00 3.55
4445 5733 3.399330 CACATCGTACCTGGAAACTGTT 58.601 45.455 0.00 0.00 0.00 3.16
4454 5745 0.465460 TGGAAACTGTTGCGCTCCTT 60.465 50.000 9.73 0.00 0.00 3.36
4456 5747 0.110644 GAAACTGTTGCGCTCCTTCG 60.111 55.000 9.73 0.00 0.00 3.79
4459 5750 1.956170 CTGTTGCGCTCCTTCGTGT 60.956 57.895 9.73 0.00 0.00 4.49
4466 5757 1.901085 GCTCCTTCGTGTCATCCCT 59.099 57.895 0.00 0.00 0.00 4.20
4473 5764 2.436646 GTGTCATCCCTGGCCACG 60.437 66.667 0.00 0.00 0.00 4.94
4514 5836 7.339482 AGAGAGAAACACCTACAAAGAAAAGT 58.661 34.615 0.00 0.00 0.00 2.66
4516 5838 9.274206 GAGAGAAACACCTACAAAGAAAAGTAT 57.726 33.333 0.00 0.00 0.00 2.12
4544 5866 1.512156 AAAACATGGTCGTCGGGCAC 61.512 55.000 0.00 0.00 0.00 5.01
4576 5898 5.478233 TTTTGACGAATCATTACATCCCG 57.522 39.130 0.00 0.00 33.85 5.14
4582 5904 4.202315 ACGAATCATTACATCCCGGATCAA 60.202 41.667 0.73 0.00 0.00 2.57
4594 5916 1.342819 CCGGATCAAACCTTTTTGCCA 59.657 47.619 0.00 0.00 41.78 4.92
4595 5917 2.610232 CCGGATCAAACCTTTTTGCCAG 60.610 50.000 0.00 0.00 41.78 4.85
4626 5948 4.100189 ACATAGAGGAGAAGAACCCATTCG 59.900 45.833 0.00 0.00 40.04 3.34
4627 5949 1.834263 AGAGGAGAAGAACCCATTCGG 59.166 52.381 0.00 0.00 40.04 4.30
4629 5951 2.236395 GAGGAGAAGAACCCATTCGGAA 59.764 50.000 0.00 0.00 40.04 4.30
4680 6002 4.223320 TGACAAGTTTCGCTGAATTTCC 57.777 40.909 0.00 0.00 0.00 3.13
4697 6019 4.194720 CCGACTCCTTCCTCGCGG 62.195 72.222 6.13 0.00 0.00 6.46
4729 6051 1.203125 GGTCCTAGCTAGCTCCAGGAT 60.203 57.143 30.28 7.48 39.33 3.24
4748 6070 5.481824 CAGGATATCTACTGGCCATAAGTCA 59.518 44.000 5.51 0.00 0.00 3.41
4790 6112 3.956744 AGACCATGCCTTAAGGAAGAAC 58.043 45.455 26.21 7.41 37.39 3.01
4791 6113 3.017442 GACCATGCCTTAAGGAAGAACC 58.983 50.000 26.21 6.65 37.39 3.62
4793 6115 2.355716 CCATGCCTTAAGGAAGAACCGA 60.356 50.000 26.21 0.00 44.74 4.69
4797 6119 3.071892 TGCCTTAAGGAAGAACCGAAGAA 59.928 43.478 26.21 0.00 44.74 2.52
4798 6120 3.685272 GCCTTAAGGAAGAACCGAAGAAG 59.315 47.826 26.21 0.00 44.74 2.85
4799 6121 4.562963 GCCTTAAGGAAGAACCGAAGAAGA 60.563 45.833 26.21 0.00 44.74 2.87
4800 6122 5.548406 CCTTAAGGAAGAACCGAAGAAGAA 58.452 41.667 17.21 0.00 44.74 2.52
4801 6123 5.639931 CCTTAAGGAAGAACCGAAGAAGAAG 59.360 44.000 17.21 0.00 44.74 2.85
4802 6124 4.957684 AAGGAAGAACCGAAGAAGAAGA 57.042 40.909 0.00 0.00 44.74 2.87
4803 6125 4.957684 AGGAAGAACCGAAGAAGAAGAA 57.042 40.909 0.00 0.00 44.74 2.52
4804 6126 4.888917 AGGAAGAACCGAAGAAGAAGAAG 58.111 43.478 0.00 0.00 44.74 2.85
4821 6143 4.359434 AGAAGGGAAGGAAGAACAAGAC 57.641 45.455 0.00 0.00 0.00 3.01
4846 6168 1.352352 AGAGACTTCCATGTGGGGTTG 59.648 52.381 0.00 0.00 37.22 3.77
4871 6193 4.510340 GCTCGTTTGAGGAGTTAAGTTCAA 59.490 41.667 0.00 0.00 42.79 2.69
4887 6209 3.017442 GTTCAAGGGAAGGAATAGGTGC 58.983 50.000 0.00 0.00 32.62 5.01
4929 7275 6.183361 CCTTCAATTTGGGGAGTTAAGGTTTT 60.183 38.462 0.00 0.00 0.00 2.43
4969 7321 7.945109 GGGATTAAATTTAGATGAAGGGCTAGT 59.055 37.037 0.00 0.00 0.00 2.57
4973 7325 7.814264 AAATTTAGATGAAGGGCTAGTGATG 57.186 36.000 0.00 0.00 0.00 3.07
4997 7349 6.323739 TGCTTTAAGAGGTTGTGGAGAAAATT 59.676 34.615 0.00 0.00 0.00 1.82
5022 7374 7.742151 TGCATATGTTAGAACATCGCAATATC 58.258 34.615 21.18 5.69 46.10 1.63
5143 7517 6.687081 TCTCGTCACAATTTGTAGGTTTTT 57.313 33.333 0.86 0.00 0.00 1.94
5144 7518 6.491394 TCTCGTCACAATTTGTAGGTTTTTG 58.509 36.000 0.86 0.00 0.00 2.44
5145 7519 6.094325 TCTCGTCACAATTTGTAGGTTTTTGT 59.906 34.615 0.86 0.00 0.00 2.83
5146 7520 7.280428 TCTCGTCACAATTTGTAGGTTTTTGTA 59.720 33.333 0.86 0.00 0.00 2.41
5169 7654 6.197364 AGTAGTCTACTTTTCATCTGTCCG 57.803 41.667 6.71 0.00 34.86 4.79
5193 7678 8.199449 CCGTATTGGTGGTTATCTAGAGTTTTA 58.801 37.037 0.00 0.00 0.00 1.52
5249 8044 7.245419 ACACAAATTTGGTTTTGAGCATAAC 57.755 32.000 21.74 0.00 38.58 1.89
5279 8113 0.411452 TTGGGTATGTGTGGGGCAAT 59.589 50.000 0.00 0.00 0.00 3.56
5323 8157 0.111639 GGGCAAGTTAACTCCCACCA 59.888 55.000 22.00 0.00 38.62 4.17
5327 8161 2.614481 GCAAGTTAACTCCCACCATCGA 60.614 50.000 8.95 0.00 0.00 3.59
5335 8169 3.305720 ACTCCCACCATCGAGCTATAAA 58.694 45.455 0.00 0.00 0.00 1.40
5385 8219 7.741027 AGCAAAGACATGGACATATTATCAG 57.259 36.000 0.00 0.00 0.00 2.90
5447 8301 4.530553 TGATTAGTAAACTCTCCAGGCACA 59.469 41.667 0.00 0.00 0.00 4.57
5629 8587 7.553881 AATAAAACAATATGACCAGAGACGG 57.446 36.000 0.00 0.00 0.00 4.79
5640 8598 1.160137 CAGAGACGGGCCAAAAAGAG 58.840 55.000 4.39 0.00 0.00 2.85
5808 8775 9.640963 AGTCTCACACACAAATATAAAGTACTC 57.359 33.333 0.00 0.00 0.00 2.59
5809 8776 9.640963 GTCTCACACACAAATATAAAGTACTCT 57.359 33.333 0.00 0.00 0.00 3.24
5810 8777 9.856488 TCTCACACACAAATATAAAGTACTCTC 57.144 33.333 0.00 0.00 0.00 3.20
5811 8778 9.862371 CTCACACACAAATATAAAGTACTCTCT 57.138 33.333 0.00 0.00 0.00 3.10
5812 8779 9.856488 TCACACACAAATATAAAGTACTCTCTC 57.144 33.333 0.00 0.00 0.00 3.20
5813 8780 9.088512 CACACACAAATATAAAGTACTCTCTCC 57.911 37.037 0.00 0.00 0.00 3.71
5814 8781 7.974501 ACACACAAATATAAAGTACTCTCTCCG 59.025 37.037 0.00 0.00 0.00 4.63
5815 8782 7.974501 CACACAAATATAAAGTACTCTCTCCGT 59.025 37.037 0.00 0.00 0.00 4.69
5816 8783 9.182214 ACACAAATATAAAGTACTCTCTCCGTA 57.818 33.333 0.00 0.00 0.00 4.02
5831 8798 8.772705 ACTCTCTCCGTAAACTAATATAAGACG 58.227 37.037 0.00 0.00 0.00 4.18
5832 8799 7.579726 TCTCTCCGTAAACTAATATAAGACGC 58.420 38.462 0.00 0.00 0.00 5.19
5833 8800 7.443575 TCTCTCCGTAAACTAATATAAGACGCT 59.556 37.037 0.00 0.00 0.00 5.07
5834 8801 7.579726 TCTCCGTAAACTAATATAAGACGCTC 58.420 38.462 0.00 0.00 0.00 5.03
5835 8802 7.443575 TCTCCGTAAACTAATATAAGACGCTCT 59.556 37.037 0.00 0.00 0.00 4.09
5836 8803 7.934457 TCCGTAAACTAATATAAGACGCTCTT 58.066 34.615 5.74 5.74 40.35 2.85
5837 8804 9.056005 TCCGTAAACTAATATAAGACGCTCTTA 57.944 33.333 9.04 9.04 42.49 2.10
5852 8819 9.953697 AAGACGCTCTTATATTAGTTTACAGAG 57.046 33.333 0.00 0.00 34.42 3.35
5853 8820 8.569641 AGACGCTCTTATATTAGTTTACAGAGG 58.430 37.037 0.00 0.00 0.00 3.69
5854 8821 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
6072 9393 6.495181 TCTGAGTGATAAAAGAGAAGTCCAGT 59.505 38.462 0.00 0.00 0.00 4.00
6085 9406 4.464597 AGAAGTCCAGTACCAAGAGCTTAG 59.535 45.833 0.00 0.00 0.00 2.18
6088 9409 2.753452 TCCAGTACCAAGAGCTTAGACG 59.247 50.000 0.00 0.00 0.00 4.18
6095 9416 5.446143 ACCAAGAGCTTAGACGATCATAG 57.554 43.478 0.00 0.00 0.00 2.23
6155 10074 9.092876 GAACCAAAATGTCAGTGTAATTGAAAA 57.907 29.630 0.00 0.00 33.03 2.29
6196 10116 3.709653 TCTCACCCACAAACTTGAGTACT 59.290 43.478 0.00 0.00 37.38 2.73
6199 10119 4.652421 TCACCCACAAACTTGAGTACTACT 59.348 41.667 0.00 0.00 0.00 2.57
6200 10120 4.750098 CACCCACAAACTTGAGTACTACTG 59.250 45.833 0.00 0.00 0.00 2.74
6208 10128 9.367444 ACAAACTTGAGTACTACTGTATAATGC 57.633 33.333 0.00 0.00 0.00 3.56
6227 10147 2.171003 GCAAGCAAGGTTATGGAGGTT 58.829 47.619 0.00 0.00 0.00 3.50
6228 10148 3.245087 TGCAAGCAAGGTTATGGAGGTTA 60.245 43.478 0.00 0.00 0.00 2.85
6300 10223 4.123506 TCAACGACTGCAACTACAAATGA 58.876 39.130 0.00 0.00 0.00 2.57
6391 10670 1.623311 TCCACGACAATGACATCCACT 59.377 47.619 0.00 0.00 0.00 4.00
6424 10710 1.267882 GCTTAATTCCACGCTAACCGC 60.268 52.381 0.00 0.00 41.76 5.68
6555 10845 1.956170 CTTCAAGACGGTGCTGCGT 60.956 57.895 0.00 0.00 0.00 5.24
7164 11461 2.183679 CTGGAGAACCTCTACTGGCTT 58.816 52.381 0.00 0.00 37.04 4.35
7173 11470 1.754226 CTCTACTGGCTTCTCACCCTC 59.246 57.143 0.00 0.00 0.00 4.30
7212 11509 1.740043 GCTACTTCCTTACGTGCGCG 61.740 60.000 19.78 19.78 44.93 6.86
7288 11592 3.270027 TCGTTGCTATATATGGCATGGC 58.730 45.455 22.58 13.29 43.86 4.40
7291 11595 2.905075 TGCTATATATGGCATGGCGTC 58.095 47.619 18.80 2.90 39.44 5.19
7338 11642 3.786635 ACGATCAGTTTGGCAGAGATAC 58.213 45.455 0.00 0.00 0.00 2.24
7352 11656 3.862267 CAGAGATACGAAGCTTCCAACTG 59.138 47.826 20.62 15.66 0.00 3.16
7356 11660 0.180406 ACGAAGCTTCCAACTGTGGT 59.820 50.000 20.62 7.18 46.11 4.16
7357 11661 1.308998 CGAAGCTTCCAACTGTGGTT 58.691 50.000 20.62 0.00 46.11 3.67
7358 11662 1.676006 CGAAGCTTCCAACTGTGGTTT 59.324 47.619 20.62 0.00 46.11 3.27
7360 11664 0.746659 AGCTTCCAACTGTGGTTTGC 59.253 50.000 0.00 0.00 46.11 3.68
7361 11665 0.249447 GCTTCCAACTGTGGTTTGCC 60.249 55.000 0.00 0.00 46.11 4.52
7369 11676 2.741145 ACTGTGGTTTGCCTTGGTTTA 58.259 42.857 0.00 0.00 35.27 2.01
7370 11677 3.304829 ACTGTGGTTTGCCTTGGTTTAT 58.695 40.909 0.00 0.00 35.27 1.40
7376 11683 4.837860 TGGTTTGCCTTGGTTTATGAAGAT 59.162 37.500 0.00 0.00 35.27 2.40
7450 11757 7.764617 ACCATCTCTGATAGGATCTCTCTTAA 58.235 38.462 0.00 0.00 0.00 1.85
7455 11762 7.942341 TCTCTGATAGGATCTCTCTTAAGGTTC 59.058 40.741 1.85 0.00 0.00 3.62
7488 11795 6.782082 ACAGCACTATCTCTCAAATACAGA 57.218 37.500 0.00 0.00 0.00 3.41
7511 11820 6.777580 AGACTTGATTTGGTTACAAGAATGGT 59.222 34.615 12.04 0.00 42.12 3.55
7516 11825 2.066592 TGGTTACAAGAATGGTGGGGA 58.933 47.619 0.00 0.00 0.00 4.81
7544 11854 0.624254 GGGTTCGAGGAAAGGGGAAT 59.376 55.000 0.00 0.00 0.00 3.01
7545 11855 1.682087 GGGTTCGAGGAAAGGGGAATG 60.682 57.143 0.00 0.00 0.00 2.67
7626 11941 0.608856 TAAGTAGTCGCCGTGTGGGA 60.609 55.000 0.00 0.00 38.47 4.37
7719 12055 3.311110 GGCTGGGTCCACGTCAGA 61.311 66.667 5.46 0.00 0.00 3.27
7770 12106 3.850098 CTTGCCCCCAAGTCGCTGT 62.850 63.158 0.00 0.00 42.76 4.40
7792 12129 0.790814 GAGGAAAACGAGCGTGAAGG 59.209 55.000 0.00 0.00 0.00 3.46
7871 12208 3.692406 GCTCGACCACCGTCCCTT 61.692 66.667 0.00 0.00 39.75 3.95
7913 12250 0.842030 AAGGATCTCCACAGGCACCA 60.842 55.000 0.00 0.00 38.89 4.17
7914 12251 0.622738 AGGATCTCCACAGGCACCAT 60.623 55.000 0.00 0.00 38.89 3.55
7936 12273 3.256383 TCAAATCATCAGTGCAAACAGGG 59.744 43.478 0.00 0.00 0.00 4.45
7999 12336 3.181500 GGAGTTGCGATACATGGAAAACC 60.181 47.826 0.00 0.00 0.00 3.27
8067 12404 4.274214 GTCATTGATCTTGCGGATGATTGA 59.726 41.667 6.76 4.53 34.33 2.57
8090 12427 4.037923 AGAACGGTCCGTAGAACTTAAACA 59.962 41.667 19.21 0.00 39.99 2.83
8106 12443 1.555967 AACAACAGCTTGTGGTTGGT 58.444 45.000 16.39 9.05 42.55 3.67
8109 12446 2.020720 CAACAGCTTGTGGTTGGTACA 58.979 47.619 6.73 0.00 40.44 2.90
8180 12518 1.595093 GCCCACTTGAAATGTCCGGG 61.595 60.000 0.00 0.00 32.30 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 8.438676 AACATCTACAGCTTCATATAAACACC 57.561 34.615 0.00 0.00 0.00 4.16
74 75 9.851686 TTGAGCAGGTTTATGATATTAACATCT 57.148 29.630 0.00 0.00 0.00 2.90
91 92 7.277760 GTCAAACTTGTTTAAATTTGAGCAGGT 59.722 33.333 12.68 8.36 40.67 4.00
134 136 6.692486 ACTCTCATGTCGATTTTACAAGACT 58.308 36.000 0.00 0.00 34.92 3.24
164 166 6.371548 GGGGGCAAATTAAAAATCAGAACTTC 59.628 38.462 0.00 0.00 0.00 3.01
253 258 2.613977 GCTACAACCAGCTGTCAGTGAT 60.614 50.000 13.81 0.00 38.57 3.06
313 318 1.819288 TCACGGAGAGCAAGTTAGAGG 59.181 52.381 0.00 0.00 0.00 3.69
316 321 4.902443 TCTATCACGGAGAGCAAGTTAG 57.098 45.455 0.00 0.00 0.00 2.34
374 379 1.461559 ACTAGACTGGTAGACGGTGC 58.538 55.000 0.00 0.00 39.29 5.01
395 400 1.207791 CTAGGAGGGCTGGTGATTGT 58.792 55.000 0.00 0.00 0.00 2.71
445 471 6.936279 ATGTATATACAATCCAGTCCGGAAG 58.064 40.000 19.11 0.94 42.17 3.46
446 472 6.070995 GGATGTATATACAATCCAGTCCGGAA 60.071 42.308 24.62 0.00 42.17 4.30
447 473 5.421056 GGATGTATATACAATCCAGTCCGGA 59.579 44.000 24.62 0.00 42.72 5.14
448 474 5.422331 AGGATGTATATACAATCCAGTCCGG 59.578 44.000 27.83 0.00 39.99 5.14
588 618 0.878523 TCGCCCTGAAGTCAACGTTG 60.879 55.000 22.35 22.35 0.00 4.10
594 624 1.140052 TGTCTTTTCGCCCTGAAGTCA 59.860 47.619 0.00 0.00 37.99 3.41
595 625 1.878953 TGTCTTTTCGCCCTGAAGTC 58.121 50.000 0.00 0.00 37.99 3.01
596 626 2.341846 TTGTCTTTTCGCCCTGAAGT 57.658 45.000 0.00 0.00 37.99 3.01
597 627 3.708563 TTTTGTCTTTTCGCCCTGAAG 57.291 42.857 0.00 0.00 37.99 3.02
600 630 7.170658 TCAAATAAATTTTGTCTTTTCGCCCTG 59.829 33.333 0.00 0.00 0.00 4.45
601 631 7.213678 TCAAATAAATTTTGTCTTTTCGCCCT 58.786 30.769 0.00 0.00 0.00 5.19
602 632 7.414814 TCAAATAAATTTTGTCTTTTCGCCC 57.585 32.000 0.00 0.00 0.00 6.13
633 663 8.147244 ACCTAAAATAGTGTGAATAGTGACCT 57.853 34.615 0.00 0.00 0.00 3.85
674 705 6.819397 AATTCCCCTTCGACTTCTTTTAAG 57.181 37.500 0.00 0.00 0.00 1.85
718 749 5.299028 ACTTGACATTGCATTGTACTTGTGA 59.701 36.000 13.89 0.00 0.00 3.58
719 750 5.522456 ACTTGACATTGCATTGTACTTGTG 58.478 37.500 13.89 5.11 0.00 3.33
818 851 1.336517 CGCAGACGTTTGGTTCCTAGA 60.337 52.381 8.31 0.00 33.53 2.43
820 853 3.204505 CGCAGACGTTTGGTTCCTA 57.795 52.632 8.31 0.00 33.53 2.94
869 906 5.048643 ACTGTGTGAGTATGTGTAGTGAGAC 60.049 44.000 0.00 0.00 30.86 3.36
1073 1140 4.130255 CCCCCTTCCTCTTCGTGA 57.870 61.111 0.00 0.00 0.00 4.35
1134 1209 4.115401 TGAGAAACTCGTGATCATCAGG 57.885 45.455 0.00 0.52 32.35 3.86
1151 1226 8.019656 ACTTGTAAACTCTAGTTTCCTTGAGA 57.980 34.615 11.21 0.00 44.15 3.27
1163 1238 8.958119 AACATCACTCAAACTTGTAAACTCTA 57.042 30.769 0.00 0.00 0.00 2.43
1170 1245 5.356751 ACTGCAAACATCACTCAAACTTGTA 59.643 36.000 0.00 0.00 0.00 2.41
1180 1273 0.467844 TGGCCACTGCAAACATCACT 60.468 50.000 0.00 0.00 40.13 3.41
1417 1528 1.777878 TGGAAGGAAGTTGGTGGCTTA 59.222 47.619 0.00 0.00 0.00 3.09
1419 1530 0.555769 TTGGAAGGAAGTTGGTGGCT 59.444 50.000 0.00 0.00 0.00 4.75
1420 1531 1.408969 TTTGGAAGGAAGTTGGTGGC 58.591 50.000 0.00 0.00 0.00 5.01
1441 1559 3.055591 CAGATCGATCATCCGTCCTTTG 58.944 50.000 26.47 8.66 30.71 2.77
1445 1563 0.730834 CGCAGATCGATCATCCGTCC 60.731 60.000 26.47 6.12 41.67 4.79
1447 1565 1.372251 GCGCAGATCGATCATCCGT 60.372 57.895 26.47 3.10 41.67 4.69
1449 1567 2.724708 GCGCGCAGATCGATCATCC 61.725 63.158 29.10 12.93 41.67 3.51
1478 1598 3.488678 CCGATCGAGATATATGCATGTGC 59.511 47.826 18.66 0.00 42.50 4.57
1481 1601 4.676546 ACACCGATCGAGATATATGCATG 58.323 43.478 18.66 0.00 0.00 4.06
1482 1602 4.991153 ACACCGATCGAGATATATGCAT 57.009 40.909 18.66 3.79 0.00 3.96
1483 1603 4.783764 AACACCGATCGAGATATATGCA 57.216 40.909 18.66 0.00 0.00 3.96
1484 1604 4.923871 ACAAACACCGATCGAGATATATGC 59.076 41.667 18.66 0.00 0.00 3.14
1485 1605 5.920840 ACACAAACACCGATCGAGATATATG 59.079 40.000 18.66 9.69 0.00 1.78
1488 1608 4.360563 GACACAAACACCGATCGAGATAT 58.639 43.478 18.66 0.00 0.00 1.63
1492 1612 0.708370 CGACACAAACACCGATCGAG 59.292 55.000 18.66 11.37 0.00 4.04
1494 1614 0.433492 GTCGACACAAACACCGATCG 59.567 55.000 11.55 8.51 33.47 3.69
1495 1615 1.493772 TGTCGACACAAACACCGATC 58.506 50.000 15.76 0.00 33.47 3.69
1496 1616 2.066262 GATGTCGACACAAACACCGAT 58.934 47.619 22.71 0.00 35.64 4.18
1497 1617 1.202428 TGATGTCGACACAAACACCGA 60.202 47.619 22.71 0.00 35.64 4.69
1498 1618 1.213491 TGATGTCGACACAAACACCG 58.787 50.000 22.71 0.00 35.64 4.94
1499 1619 5.545658 AATATGATGTCGACACAAACACC 57.454 39.130 22.71 4.93 35.64 4.16
1500 1620 6.682863 GCTTAATATGATGTCGACACAAACAC 59.317 38.462 22.71 8.80 35.64 3.32
1501 1621 6.593770 AGCTTAATATGATGTCGACACAAACA 59.406 34.615 22.71 17.98 35.64 2.83
1502 1622 7.005062 AGCTTAATATGATGTCGACACAAAC 57.995 36.000 22.71 12.97 35.64 2.93
1503 1623 7.609760 AAGCTTAATATGATGTCGACACAAA 57.390 32.000 22.71 9.84 35.64 2.83
1504 1624 7.609760 AAAGCTTAATATGATGTCGACACAA 57.390 32.000 22.71 12.64 35.64 3.33
1505 1625 7.463544 CAAAAGCTTAATATGATGTCGACACA 58.536 34.615 22.71 20.17 36.78 3.72
1506 1626 6.412072 GCAAAAGCTTAATATGATGTCGACAC 59.588 38.462 22.71 15.11 0.00 3.67
1507 1627 6.316140 AGCAAAAGCTTAATATGATGTCGACA 59.684 34.615 22.48 22.48 0.00 4.35
1508 1628 6.719365 AGCAAAAGCTTAATATGATGTCGAC 58.281 36.000 9.11 9.11 0.00 4.20
1509 1629 6.925610 AGCAAAAGCTTAATATGATGTCGA 57.074 33.333 0.00 0.00 0.00 4.20
1510 1630 6.634436 GGAAGCAAAAGCTTAATATGATGTCG 59.366 38.462 0.00 0.00 0.00 4.35
1511 1631 6.920210 GGGAAGCAAAAGCTTAATATGATGTC 59.080 38.462 0.00 0.00 0.00 3.06
1512 1632 6.608808 AGGGAAGCAAAAGCTTAATATGATGT 59.391 34.615 0.00 0.00 0.00 3.06
1513 1633 7.047460 AGGGAAGCAAAAGCTTAATATGATG 57.953 36.000 0.00 0.00 0.00 3.07
1514 1634 6.835488 TGAGGGAAGCAAAAGCTTAATATGAT 59.165 34.615 0.00 0.00 0.00 2.45
1515 1635 6.186957 TGAGGGAAGCAAAAGCTTAATATGA 58.813 36.000 0.00 0.00 0.00 2.15
1516 1636 6.455360 TGAGGGAAGCAAAAGCTTAATATG 57.545 37.500 0.00 0.00 0.00 1.78
1673 1811 2.031012 CAGAGCAGGAACACGGCA 59.969 61.111 0.00 0.00 43.19 5.69
1727 1865 1.448893 GAACTGGTTCGCGCCCATA 60.449 57.895 16.18 0.00 0.00 2.74
1736 1874 3.119096 GCCGCCTCGAACTGGTTC 61.119 66.667 3.62 3.62 36.29 3.62
1968 2106 2.351276 GACGACCACCCTGGCAAT 59.649 61.111 0.00 0.00 42.67 3.56
2045 2186 2.361483 TCACCGCTACGTAGCCCA 60.361 61.111 35.22 17.68 46.34 5.36
2060 2201 0.098200 CGGTCTTGCTATCGTCGTCA 59.902 55.000 0.00 0.00 0.00 4.35
2093 2234 2.701780 GCTGTCGCTCGGAGGAAGA 61.702 63.158 7.20 0.00 0.00 2.87
2147 2288 7.416890 GGGAGTAGATTCAGCATATAATACGCT 60.417 40.741 0.00 0.00 36.10 5.07
2188 2329 7.913789 TGATGTAGTGGGGTGGATTATATAAC 58.086 38.462 0.00 0.00 0.00 1.89
2210 2351 4.080015 TCGGGACCCAATGTAATTTCTGAT 60.080 41.667 12.15 0.00 31.22 2.90
2221 2362 1.308998 GCAGTTATCGGGACCCAATG 58.691 55.000 12.15 1.11 0.00 2.82
2376 2518 2.279851 CTTCGCCCACACACACGA 60.280 61.111 0.00 0.00 0.00 4.35
3122 3293 1.305297 TGAGAGAGGTCGCCCACAT 60.305 57.895 0.00 0.00 0.00 3.21
3201 3372 2.061773 CGTCCAGTAACTTCTGCACAG 58.938 52.381 0.00 0.00 34.47 3.66
3202 3373 1.270094 CCGTCCAGTAACTTCTGCACA 60.270 52.381 0.00 0.00 34.47 4.57
3265 3436 4.255301 TGTAATCGGAAATGTTAACGCCT 58.745 39.130 0.26 0.00 0.00 5.52
3286 3457 8.971321 CAAAATTGGCCTCGATCTATTAAAATG 58.029 33.333 3.32 0.00 0.00 2.32
3287 3458 8.143835 CCAAAATTGGCCTCGATCTATTAAAAT 58.856 33.333 3.32 0.00 42.21 1.82
3288 3459 7.488322 CCAAAATTGGCCTCGATCTATTAAAA 58.512 34.615 3.32 0.00 42.21 1.52
3289 3460 7.038154 CCAAAATTGGCCTCGATCTATTAAA 57.962 36.000 3.32 0.00 42.21 1.52
3301 3472 5.005820 ACCATAGGTTTCCAAAATTGGCCT 61.006 41.667 3.32 10.43 39.74 5.19
3347 4257 6.749118 GTCTTCATTGAGGTGAATTATTGCAC 59.251 38.462 0.00 0.00 37.47 4.57
3352 4262 7.861629 TGTAGGTCTTCATTGAGGTGAATTAT 58.138 34.615 0.00 0.00 37.47 1.28
3353 4263 7.252612 TGTAGGTCTTCATTGAGGTGAATTA 57.747 36.000 0.00 0.00 37.47 1.40
3354 4264 6.126863 TGTAGGTCTTCATTGAGGTGAATT 57.873 37.500 0.00 0.00 37.47 2.17
3373 4287 7.178074 CGATGCTGAATATTATGTGCATGTAG 58.822 38.462 16.37 8.15 40.58 2.74
3378 4292 3.814283 TGCGATGCTGAATATTATGTGCA 59.186 39.130 6.61 6.61 34.88 4.57
3389 4303 1.001293 ACAGTCTCTTGCGATGCTGAA 59.999 47.619 0.00 0.00 0.00 3.02
3392 4306 1.018226 GCACAGTCTCTTGCGATGCT 61.018 55.000 0.00 0.00 0.00 3.79
3394 4308 1.136141 GTTGCACAGTCTCTTGCGATG 60.136 52.381 0.00 0.00 41.96 3.84
3397 4311 0.657312 TTGTTGCACAGTCTCTTGCG 59.343 50.000 0.00 0.00 41.96 4.85
3402 4316 6.060028 TGTTAAGATTTGTTGCACAGTCTC 57.940 37.500 0.00 0.00 28.88 3.36
3403 4317 6.639632 ATGTTAAGATTTGTTGCACAGTCT 57.360 33.333 0.00 0.00 0.00 3.24
3405 4319 6.697019 GTCAATGTTAAGATTTGTTGCACAGT 59.303 34.615 0.00 0.00 0.00 3.55
3406 4320 6.129378 CGTCAATGTTAAGATTTGTTGCACAG 60.129 38.462 0.00 0.00 0.00 3.66
3407 4321 5.685068 CGTCAATGTTAAGATTTGTTGCACA 59.315 36.000 0.00 0.00 0.00 4.57
3410 4331 6.398935 GCTTCGTCAATGTTAAGATTTGTTGC 60.399 38.462 0.00 0.00 0.00 4.17
3435 4356 3.977244 GTGTTGCGCTTGTGGGGG 61.977 66.667 9.73 0.00 0.00 5.40
3445 4388 1.348538 TTGCTATCGACCGTGTTGCG 61.349 55.000 0.00 0.00 40.95 4.85
3449 4392 2.094182 AGTGATTTGCTATCGACCGTGT 60.094 45.455 0.00 0.00 0.00 4.49
3453 4396 4.210120 GTGATGAGTGATTTGCTATCGACC 59.790 45.833 0.00 0.00 0.00 4.79
3456 4399 7.468922 TTTAGTGATGAGTGATTTGCTATCG 57.531 36.000 0.00 0.00 0.00 2.92
3522 4465 8.885722 AGTTCTAGAATCTAGACTTAACGTGAG 58.114 37.037 18.73 0.00 0.00 3.51
3523 4466 8.789825 AGTTCTAGAATCTAGACTTAACGTGA 57.210 34.615 18.73 0.00 0.00 4.35
3593 4536 1.440893 AGCTGCACTATGCTCTCGG 59.559 57.895 1.02 0.00 45.31 4.63
3600 4543 2.214387 TCATCGTGAGCTGCACTATG 57.786 50.000 17.22 17.22 46.47 2.23
3614 4557 8.338259 CCTCCTAATAACAACAGAAAATCATCG 58.662 37.037 0.00 0.00 0.00 3.84
3624 4567 6.016276 ACAAAAGCACCTCCTAATAACAACAG 60.016 38.462 0.00 0.00 0.00 3.16
3626 4569 6.327279 ACAAAAGCACCTCCTAATAACAAC 57.673 37.500 0.00 0.00 0.00 3.32
3628 4571 7.668052 ACAATACAAAAGCACCTCCTAATAACA 59.332 33.333 0.00 0.00 0.00 2.41
3629 4572 8.051901 ACAATACAAAAGCACCTCCTAATAAC 57.948 34.615 0.00 0.00 0.00 1.89
3632 4592 6.602009 GGTACAATACAAAAGCACCTCCTAAT 59.398 38.462 0.00 0.00 0.00 1.73
3682 4642 0.532115 GGGCCCTTTTGCACATACTG 59.468 55.000 17.04 0.00 33.82 2.74
3761 4730 6.702282 GGTATGATTTTAGCCACAGAGAGTAC 59.298 42.308 0.00 0.00 0.00 2.73
3798 5013 0.178068 GCTAGATGCCCGTGAAAGGA 59.822 55.000 0.00 0.00 35.15 3.36
3828 5051 3.882444 CATCTCAGAAAAGATGGCAGGA 58.118 45.455 6.08 0.00 45.88 3.86
3846 5069 5.882000 TGGCAGGAATATATGTATGCACATC 59.118 40.000 14.63 2.82 44.42 3.06
3851 5074 6.038356 GCAAATGGCAGGAATATATGTATGC 58.962 40.000 0.00 7.45 43.97 3.14
3883 5106 0.602562 CCATCGGTTGTGGCACAATT 59.397 50.000 33.14 17.03 44.16 2.32
3912 5139 1.931137 CATGCGCGCAATCGTTGAG 60.931 57.895 39.68 15.77 38.14 3.02
3934 5161 3.078837 GGGTTGTGTACGATCCAACAAT 58.921 45.455 12.07 0.00 40.10 2.71
3969 5196 3.560068 ACGTGGTAGCTATAGCATTTTGC 59.440 43.478 26.07 9.15 45.46 3.68
4009 5266 1.439679 CGTAGCCACTCCAAGGAAAC 58.560 55.000 0.00 0.00 0.00 2.78
4018 5275 1.900545 AAAGGGAGCCGTAGCCACTC 61.901 60.000 0.00 0.00 41.25 3.51
4077 5344 5.889853 ACGGGTACTTATATCTGACAGAACA 59.110 40.000 9.70 0.67 0.00 3.18
4094 5361 1.047034 AGGTATGGCTCCACGGGTAC 61.047 60.000 0.00 0.00 0.00 3.34
4104 5371 2.026262 ACCGATGTTGAAAGGTATGGCT 60.026 45.455 0.00 0.00 34.83 4.75
4111 5378 2.472695 TCTCCACCGATGTTGAAAGG 57.527 50.000 0.00 0.00 0.00 3.11
4123 5390 4.402056 TCGAGGATAAATGTTCTCCACC 57.598 45.455 0.00 0.00 0.00 4.61
4146 5413 8.831550 GTTGTTTTCATGGGCAAAAGTATTTAA 58.168 29.630 0.00 0.00 37.28 1.52
4248 5531 5.377164 AGAGAGAAGGTATTGATAGAGGGGA 59.623 44.000 0.00 0.00 0.00 4.81
4249 5532 5.650283 AGAGAGAAGGTATTGATAGAGGGG 58.350 45.833 0.00 0.00 0.00 4.79
4250 5533 5.414454 CGAGAGAGAAGGTATTGATAGAGGG 59.586 48.000 0.00 0.00 0.00 4.30
4251 5534 6.001460 ACGAGAGAGAAGGTATTGATAGAGG 58.999 44.000 0.00 0.00 0.00 3.69
4252 5535 6.148811 GGACGAGAGAGAAGGTATTGATAGAG 59.851 46.154 0.00 0.00 0.00 2.43
4274 5560 1.984321 GAGAGAGTGAGTCGCGGGAC 61.984 65.000 23.85 23.85 43.76 4.46
4277 5563 1.711060 GGAGAGAGAGTGAGTCGCGG 61.711 65.000 6.13 0.00 0.00 6.46
4278 5564 0.742990 AGGAGAGAGAGTGAGTCGCG 60.743 60.000 0.00 0.00 0.00 5.87
4284 5570 1.077357 GGCGGAGGAGAGAGAGTGA 60.077 63.158 0.00 0.00 0.00 3.41
4288 5574 0.681564 GAGTTGGCGGAGGAGAGAGA 60.682 60.000 0.00 0.00 0.00 3.10
4300 5588 4.980805 TGCCGTCGTGGAGTTGGC 62.981 66.667 0.51 0.00 45.91 4.52
4330 5618 3.813724 GGACCATGGCCAGGGAGG 61.814 72.222 41.60 26.10 41.84 4.30
4347 5635 0.811616 GCATGGGCGTTAGGACTCAG 60.812 60.000 0.00 0.00 0.00 3.35
4349 5637 1.090052 GTGCATGGGCGTTAGGACTC 61.090 60.000 0.00 0.00 45.35 3.36
4350 5638 1.078426 GTGCATGGGCGTTAGGACT 60.078 57.895 0.00 0.00 45.35 3.85
4352 5640 2.270850 GGTGCATGGGCGTTAGGA 59.729 61.111 0.00 0.00 45.35 2.94
4396 5684 5.703978 TGCGAAATCAAAGAAAATCCTCA 57.296 34.783 0.00 0.00 0.00 3.86
4416 5704 2.205074 CAGGTACGATGTGGAAGATGC 58.795 52.381 0.00 0.00 0.00 3.91
4437 5725 0.110644 CGAAGGAGCGCAACAGTTTC 60.111 55.000 11.47 7.71 0.00 2.78
4439 5727 1.227556 ACGAAGGAGCGCAACAGTT 60.228 52.632 11.47 0.58 33.86 3.16
4444 5732 1.005037 ATGACACGAAGGAGCGCAA 60.005 52.632 11.47 0.00 33.86 4.85
4445 5733 1.446099 GATGACACGAAGGAGCGCA 60.446 57.895 11.47 0.00 33.86 6.09
4454 5745 2.606213 TGGCCAGGGATGACACGA 60.606 61.111 0.00 0.00 0.00 4.35
4456 5747 2.436646 CGTGGCCAGGGATGACAC 60.437 66.667 17.92 0.00 0.00 3.67
4473 5764 4.865905 TCTCTCTAGAGGATGATATGCCC 58.134 47.826 19.67 0.00 42.30 5.36
4479 5801 5.776358 AGGTGTTTCTCTCTAGAGGATGAT 58.224 41.667 19.67 0.00 42.30 2.45
4480 5802 5.199982 AGGTGTTTCTCTCTAGAGGATGA 57.800 43.478 19.67 12.32 42.30 2.92
4485 5807 7.455641 TCTTTGTAGGTGTTTCTCTCTAGAG 57.544 40.000 13.98 13.98 43.36 2.43
4514 5836 6.693978 CGACGACCATGTTTTCACTATACATA 59.306 38.462 0.00 0.00 31.64 2.29
4516 5838 4.860352 CGACGACCATGTTTTCACTATACA 59.140 41.667 0.00 0.00 0.00 2.29
4544 5866 5.565592 TGATTCGTCAAAATTGGAGATGG 57.434 39.130 0.00 0.00 0.00 3.51
4546 5868 8.279970 TGTAATGATTCGTCAAAATTGGAGAT 57.720 30.769 0.00 0.00 0.00 2.75
4576 5898 2.224257 TGCTGGCAAAAAGGTTTGATCC 60.224 45.455 3.44 0.00 45.99 3.36
4582 5904 1.043022 CTCCTGCTGGCAAAAAGGTT 58.957 50.000 4.42 0.00 0.00 3.50
4594 5916 3.678965 TCTCCTCTATGTTCTCCTGCT 57.321 47.619 0.00 0.00 0.00 4.24
4595 5917 3.957497 TCTTCTCCTCTATGTTCTCCTGC 59.043 47.826 0.00 0.00 0.00 4.85
4626 5948 3.879892 ACAGTTTGAGCACTCTTTCTTCC 59.120 43.478 0.00 0.00 0.00 3.46
4627 5949 4.572389 TCACAGTTTGAGCACTCTTTCTTC 59.428 41.667 0.00 0.00 0.00 2.87
4629 5951 4.142609 TCACAGTTTGAGCACTCTTTCT 57.857 40.909 0.00 0.00 0.00 2.52
4670 5992 2.010497 GAAGGAGTCGGGAAATTCAGC 58.990 52.381 0.00 0.00 0.00 4.26
4697 6019 1.534805 GCTAGGACCTAAACGTACGCC 60.535 57.143 16.72 6.44 0.00 5.68
4704 6026 3.297736 TGGAGCTAGCTAGGACCTAAAC 58.702 50.000 19.38 0.19 0.00 2.01
4729 6051 7.235399 TCAATGATGACTTATGGCCAGTAGATA 59.765 37.037 20.47 10.67 0.00 1.98
4748 6070 5.408604 GTCTTGAGTTTACACGGTCAATGAT 59.591 40.000 0.00 0.00 0.00 2.45
4759 6081 3.788227 AGGCATGGTCTTGAGTTTACA 57.212 42.857 0.00 0.00 0.00 2.41
4790 6112 2.567615 TCCTTCCCTTCTTCTTCTTCGG 59.432 50.000 0.00 0.00 0.00 4.30
4791 6113 3.963428 TCCTTCCCTTCTTCTTCTTCG 57.037 47.619 0.00 0.00 0.00 3.79
4793 6115 5.132816 TGTTCTTCCTTCCCTTCTTCTTCTT 59.867 40.000 0.00 0.00 0.00 2.52
4797 6119 4.660771 TCTTGTTCTTCCTTCCCTTCTTCT 59.339 41.667 0.00 0.00 0.00 2.85
4798 6120 4.757657 GTCTTGTTCTTCCTTCCCTTCTTC 59.242 45.833 0.00 0.00 0.00 2.87
4799 6121 4.720046 GTCTTGTTCTTCCTTCCCTTCTT 58.280 43.478 0.00 0.00 0.00 2.52
4800 6122 3.244249 CGTCTTGTTCTTCCTTCCCTTCT 60.244 47.826 0.00 0.00 0.00 2.85
4801 6123 3.067833 CGTCTTGTTCTTCCTTCCCTTC 58.932 50.000 0.00 0.00 0.00 3.46
4802 6124 2.224548 CCGTCTTGTTCTTCCTTCCCTT 60.225 50.000 0.00 0.00 0.00 3.95
4803 6125 1.348036 CCGTCTTGTTCTTCCTTCCCT 59.652 52.381 0.00 0.00 0.00 4.20
4804 6126 1.346722 TCCGTCTTGTTCTTCCTTCCC 59.653 52.381 0.00 0.00 0.00 3.97
4821 6143 1.135915 CCACATGGAAGTCTCTCTCCG 59.864 57.143 0.00 0.00 37.39 4.63
4846 6168 3.915536 ACTTAACTCCTCAAACGAGCTC 58.084 45.455 2.73 2.73 0.00 4.09
4871 6193 1.984288 GCGGCACCTATTCCTTCCCT 61.984 60.000 0.00 0.00 0.00 4.20
4901 7247 5.047306 CCTTAACTCCCCAAATTGAAGGAAC 60.047 44.000 0.00 0.00 35.27 3.62
4957 7303 3.659183 AAAGCATCACTAGCCCTTCAT 57.341 42.857 0.00 0.00 0.00 2.57
4958 7304 4.225042 TCTTAAAGCATCACTAGCCCTTCA 59.775 41.667 0.00 0.00 0.00 3.02
4962 7314 3.118223 ACCTCTTAAAGCATCACTAGCCC 60.118 47.826 0.00 0.00 0.00 5.19
4969 7321 4.041567 TCTCCACAACCTCTTAAAGCATCA 59.958 41.667 0.00 0.00 0.00 3.07
4973 7325 5.767816 TTTTCTCCACAACCTCTTAAAGC 57.232 39.130 0.00 0.00 0.00 3.51
5031 7383 5.702209 TGTCTTTTTCCGTGGAGGTTATAAC 59.298 40.000 7.09 7.09 41.99 1.89
5144 7518 7.148272 ACGGACAGATGAAAAGTAGACTACTAC 60.148 40.741 15.51 10.53 46.49 2.73
5145 7519 6.883217 ACGGACAGATGAAAAGTAGACTACTA 59.117 38.462 15.51 0.43 38.26 1.82
5146 7520 5.711036 ACGGACAGATGAAAAGTAGACTACT 59.289 40.000 9.45 9.45 41.73 2.57
5249 8044 2.978946 ATACCCAACACTGGCCCCG 61.979 63.158 0.00 0.00 41.99 5.73
5279 8113 0.482446 AGGGACATCAAGGCAAACCA 59.518 50.000 0.00 0.00 39.06 3.67
5385 8219 5.539582 TTAATTTGTGTAGCATGGTCGTC 57.460 39.130 0.00 0.00 0.00 4.20
5467 8321 3.370209 GGACGGGCTAAAAGTTAGATGGT 60.370 47.826 0.00 0.00 0.00 3.55
5473 8327 4.657039 AGGATATGGACGGGCTAAAAGTTA 59.343 41.667 0.00 0.00 0.00 2.24
5511 8460 9.745880 GTAGCTAATACACTACTTTTCTGCATA 57.254 33.333 0.00 0.00 36.62 3.14
5617 8575 1.701031 TTTTGGCCCGTCTCTGGTCA 61.701 55.000 0.00 0.00 35.19 4.02
5627 8585 1.450025 GGAGTACTCTTTTTGGCCCG 58.550 55.000 21.88 0.00 0.00 6.13
5628 8586 1.354705 AGGGAGTACTCTTTTTGGCCC 59.645 52.381 21.88 12.76 34.52 5.80
5629 8587 2.618302 GGAGGGAGTACTCTTTTTGGCC 60.618 54.545 21.88 12.59 37.63 5.36
5640 8598 8.437575 TCATTTATTTTAGGATGGAGGGAGTAC 58.562 37.037 0.00 0.00 0.00 2.73
5690 8648 8.840200 ATACTCCCTCTGTCTCAAAATAAGTA 57.160 34.615 0.00 0.00 0.00 2.24
5805 8772 8.772705 CGTCTTATATTAGTTTACGGAGAGAGT 58.227 37.037 0.00 0.00 0.00 3.24
5806 8773 7.745594 GCGTCTTATATTAGTTTACGGAGAGAG 59.254 40.741 0.00 0.00 0.00 3.20
5807 8774 7.443575 AGCGTCTTATATTAGTTTACGGAGAGA 59.556 37.037 0.00 0.00 0.00 3.10
5808 8775 7.583230 AGCGTCTTATATTAGTTTACGGAGAG 58.417 38.462 0.00 0.00 0.00 3.20
5809 8776 7.443575 AGAGCGTCTTATATTAGTTTACGGAGA 59.556 37.037 0.00 0.00 0.00 3.71
5810 8777 7.583230 AGAGCGTCTTATATTAGTTTACGGAG 58.417 38.462 0.00 0.00 0.00 4.63
5811 8778 7.502120 AGAGCGTCTTATATTAGTTTACGGA 57.498 36.000 0.00 0.00 0.00 4.69
5812 8779 9.837525 ATAAGAGCGTCTTATATTAGTTTACGG 57.162 33.333 14.61 0.00 45.13 4.02
5826 8793 9.953697 CTCTGTAAACTAATATAAGAGCGTCTT 57.046 33.333 5.74 5.74 40.35 3.01
5827 8794 8.569641 CCTCTGTAAACTAATATAAGAGCGTCT 58.430 37.037 0.00 0.00 0.00 4.18
5828 8795 7.808856 CCCTCTGTAAACTAATATAAGAGCGTC 59.191 40.741 0.00 0.00 0.00 5.19
5829 8796 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
5830 8797 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
5831 8798 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
5847 8814 9.585369 GGTACTTATAAATAGTACTCCCTCTGT 57.415 37.037 0.00 0.00 44.64 3.41
5848 8815 9.584008 TGGTACTTATAAATAGTACTCCCTCTG 57.416 37.037 0.00 0.00 44.64 3.35
5851 8818 9.893975 ACATGGTACTTATAAATAGTACTCCCT 57.106 33.333 0.00 0.00 44.64 4.20
5998 8971 2.483876 GGTGCATAGCGCTTAGATGAA 58.516 47.619 18.68 4.94 43.06 2.57
6072 9393 6.296803 TCTATGATCGTCTAAGCTCTTGGTA 58.703 40.000 0.00 0.00 0.00 3.25
6095 9416 9.199184 CGCACGTGAGCATATAAATTATAAATC 57.801 33.333 22.23 0.00 0.00 2.17
6109 9430 2.357952 TCTATAGAACGCACGTGAGCAT 59.642 45.455 22.23 9.01 0.00 3.79
6110 9431 1.741145 TCTATAGAACGCACGTGAGCA 59.259 47.619 22.23 2.66 0.00 4.26
6155 10074 3.873952 GAGACTAATTTGCCGAGCTGAAT 59.126 43.478 0.00 0.00 0.00 2.57
6196 10116 7.228507 CCATAACCTTGCTTGCATTATACAGTA 59.771 37.037 0.00 0.00 0.00 2.74
6199 10119 6.125719 TCCATAACCTTGCTTGCATTATACA 58.874 36.000 0.00 0.00 0.00 2.29
6200 10120 6.294176 CCTCCATAACCTTGCTTGCATTATAC 60.294 42.308 0.00 0.00 0.00 1.47
6208 10128 4.843728 TCTAACCTCCATAACCTTGCTTG 58.156 43.478 0.00 0.00 0.00 4.01
6300 10223 7.905604 TTCATCCATCTTAATTAATCGCGAT 57.094 32.000 17.62 17.62 0.00 4.58
6391 10670 5.295787 GTGGAATTAAGCGGATGTCATTGTA 59.704 40.000 0.00 0.00 0.00 2.41
6424 10710 3.485431 CAGGAAGCTGCACGCGAG 61.485 66.667 15.93 5.97 45.59 5.03
6555 10845 1.527433 CGCTCCAGATCGGCAGGATA 61.527 60.000 0.00 0.00 34.82 2.59
6681 10971 1.287503 GAGGGAGCCGACGATCATC 59.712 63.158 0.00 0.00 0.00 2.92
7164 11461 2.750637 GCGACGAGGAGGGTGAGA 60.751 66.667 0.00 0.00 0.00 3.27
7173 11470 1.446272 GAAGTTGAGGGCGACGAGG 60.446 63.158 0.00 0.00 33.42 4.63
7212 11509 3.510360 TGTTCTGGTACCTGTAGAGCTTC 59.490 47.826 14.36 1.53 0.00 3.86
7288 11592 0.317269 CCAAAGCAAGCACACAGACG 60.317 55.000 0.00 0.00 0.00 4.18
7291 11595 0.249155 CACCCAAAGCAAGCACACAG 60.249 55.000 0.00 0.00 0.00 3.66
7352 11656 4.038642 TCTTCATAAACCAAGGCAAACCAC 59.961 41.667 0.00 0.00 39.06 4.16
7355 11659 7.547227 ACATATCTTCATAAACCAAGGCAAAC 58.453 34.615 0.00 0.00 0.00 2.93
7356 11660 7.716799 ACATATCTTCATAAACCAAGGCAAA 57.283 32.000 0.00 0.00 0.00 3.68
7357 11661 7.716799 AACATATCTTCATAAACCAAGGCAA 57.283 32.000 0.00 0.00 0.00 4.52
7358 11662 8.995027 ATAACATATCTTCATAAACCAAGGCA 57.005 30.769 0.00 0.00 0.00 4.75
7392 11699 7.523293 TTTAGTTGGAAGCTCATCAAAATCA 57.477 32.000 0.00 0.00 0.00 2.57
7450 11757 5.700402 AGTGCTGTTAATCCATAGAACCT 57.300 39.130 0.00 0.00 0.00 3.50
7455 11762 7.890515 TGAGAGATAGTGCTGTTAATCCATAG 58.109 38.462 0.00 0.00 0.00 2.23
7488 11795 6.239289 CCACCATTCTTGTAACCAAATCAAGT 60.239 38.462 0.00 0.00 39.36 3.16
7719 12055 0.616111 AGGGAAGGATGTCAGCGTCT 60.616 55.000 0.00 0.00 0.00 4.18
7734 12070 3.003173 CCGCTGGTCAAGGAGGGA 61.003 66.667 0.00 0.00 0.00 4.20
7764 12100 0.671796 TCGTTTTCCTCTGACAGCGA 59.328 50.000 0.00 0.00 32.59 4.93
7770 12106 0.671796 TCACGCTCGTTTTCCTCTGA 59.328 50.000 0.00 0.00 0.00 3.27
7792 12129 1.847088 ACCTGGGAGGATAAAGAAGCC 59.153 52.381 0.00 0.00 37.67 4.35
7913 12250 4.081862 CCCTGTTTGCACTGATGATTTGAT 60.082 41.667 0.00 0.00 0.00 2.57
7914 12251 3.256383 CCCTGTTTGCACTGATGATTTGA 59.744 43.478 0.00 0.00 0.00 2.69
7936 12273 0.737715 CTGCTGTTACTCCCGTGCTC 60.738 60.000 0.00 0.00 0.00 4.26
8015 12352 0.321298 GAACTCCAACTGCCGGCTTA 60.321 55.000 29.70 7.24 0.00 3.09
8067 12404 4.037923 TGTTTAAGTTCTACGGACCGTTCT 59.962 41.667 27.06 15.17 41.54 3.01
8090 12427 2.297701 CTGTACCAACCACAAGCTGTT 58.702 47.619 0.00 0.00 0.00 3.16
8106 12443 1.906105 GACATCGGTTGCCCCCTGTA 61.906 60.000 0.00 0.00 0.00 2.74
8109 12446 2.610859 AGACATCGGTTGCCCCCT 60.611 61.111 0.00 0.00 0.00 4.79
8180 12518 3.378206 GGCTGACAAGAAGCGTTCAGC 62.378 57.143 13.57 13.57 46.70 4.26
8216 12554 2.507992 CCTTCACAGAGCTCGGCG 60.508 66.667 14.20 4.49 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.