Multiple sequence alignment - TraesCS7B01G020300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G020300 chr7B 100.000 7294 0 0 1 7294 17848580 17841287 0.000000e+00 13470.0
1 TraesCS7B01G020300 chr7B 92.617 1192 71 7 1007 2182 17662319 17663509 0.000000e+00 1698.0
2 TraesCS7B01G020300 chr7B 92.495 986 58 6 5370 6343 17665920 17666901 0.000000e+00 1397.0
3 TraesCS7B01G020300 chr7B 91.000 900 78 3 5433 6332 18098058 18097162 0.000000e+00 1210.0
4 TraesCS7B01G020300 chr7B 90.847 590 53 1 1579 2168 18102901 18102313 0.000000e+00 789.0
5 TraesCS7B01G020300 chr7B 82.537 670 68 27 3477 4109 17664334 17664991 1.790000e-150 544.0
6 TraesCS7B01G020300 chr7B 85.511 421 27 13 4107 4527 17665104 17665490 6.810000e-110 409.0
7 TraesCS7B01G020300 chr7B 82.529 435 52 15 1084 1512 18103444 18103028 1.930000e-95 361.0
8 TraesCS7B01G020300 chr7B 81.844 358 47 7 2481 2837 383642524 383642864 1.200000e-72 285.0
9 TraesCS7B01G020300 chr7B 82.784 273 17 3 4529 4801 17665587 17665829 4.430000e-52 217.0
10 TraesCS7B01G020300 chr7B 92.593 54 4 0 281 334 713674468 713674415 2.180000e-10 78.7
11 TraesCS7B01G020300 chr7B 97.436 39 1 0 129 167 483259824 483259862 4.720000e-07 67.6
12 TraesCS7B01G020300 chr7B 97.059 34 0 1 964 996 17847587 17847554 1.000000e-03 56.5
13 TraesCS7B01G020300 chr7B 97.059 34 0 1 994 1027 17847617 17847585 1.000000e-03 56.5
14 TraesCS7B01G020300 chr7D 93.116 1656 83 14 4815 6444 74448076 74446426 0.000000e+00 2398.0
15 TraesCS7B01G020300 chr7D 95.516 1182 39 8 1032 2206 74452728 74451554 0.000000e+00 1877.0
16 TraesCS7B01G020300 chr7D 94.142 1229 62 10 2244 3467 74451553 74450330 0.000000e+00 1862.0
17 TraesCS7B01G020300 chr7D 87.771 1521 117 33 5006 6474 74421111 74422614 0.000000e+00 1714.0
18 TraesCS7B01G020300 chr7D 90.918 1046 62 12 1067 2101 74417356 74418379 0.000000e+00 1375.0
19 TraesCS7B01G020300 chr7D 90.074 947 87 7 5386 6332 74582209 74581270 0.000000e+00 1221.0
20 TraesCS7B01G020300 chr7D 91.967 722 28 9 3453 4169 74450315 74449619 0.000000e+00 985.0
21 TraesCS7B01G020300 chr7D 88.184 804 59 10 221 996 74470945 74470150 0.000000e+00 926.0
22 TraesCS7B01G020300 chr7D 87.785 745 74 8 6554 7294 613462644 613463375 0.000000e+00 856.0
23 TraesCS7B01G020300 chr7D 91.639 598 49 1 1579 2176 74587115 74586519 0.000000e+00 826.0
24 TraesCS7B01G020300 chr7D 83.019 742 73 35 3477 4182 74418806 74419530 2.230000e-174 623.0
25 TraesCS7B01G020300 chr7D 83.692 650 44 13 4168 4815 74449555 74448966 2.300000e-154 556.0
26 TraesCS7B01G020300 chr7D 84.507 426 42 7 4175 4600 74419812 74420213 4.100000e-107 399.0
27 TraesCS7B01G020300 chr7D 82.998 447 54 17 1084 1514 74587654 74587214 1.150000e-102 385.0
28 TraesCS7B01G020300 chr7D 84.450 373 45 7 2925 3286 74418429 74418799 9.000000e-94 355.0
29 TraesCS7B01G020300 chr7D 93.694 222 11 2 1 219 74471690 74471469 5.460000e-86 329.0
30 TraesCS7B01G020300 chr7D 85.538 325 16 9 673 977 74416999 74417312 1.980000e-80 311.0
31 TraesCS7B01G020300 chr7D 97.561 41 1 0 2128 2168 74418382 74418422 3.650000e-08 71.3
32 TraesCS7B01G020300 chr7A 87.869 1558 92 43 673 2185 78452036 78453541 0.000000e+00 1740.0
33 TraesCS7B01G020300 chr7A 87.310 1119 109 17 1065 2176 78469487 78468395 0.000000e+00 1249.0
34 TraesCS7B01G020300 chr7A 89.231 910 83 10 5433 6331 78464787 78463882 0.000000e+00 1123.0
35 TraesCS7B01G020300 chr7A 94.101 712 37 2 5459 6166 78459115 78459825 0.000000e+00 1077.0
36 TraesCS7B01G020300 chr7A 84.304 618 56 27 3594 4185 78454251 78454853 3.820000e-157 566.0
37 TraesCS7B01G020300 chr7A 87.153 288 35 2 3001 3286 78453914 78454201 7.060000e-85 326.0
38 TraesCS7B01G020300 chr7A 90.708 226 16 5 4245 4469 78455196 78455417 5.530000e-76 296.0
39 TraesCS7B01G020300 chr7A 82.645 363 35 16 2488 2840 605264505 605264161 5.530000e-76 296.0
40 TraesCS7B01G020300 chr7A 84.043 188 22 4 486 668 493517692 493517876 2.700000e-39 174.0
41 TraesCS7B01G020300 chr7A 89.394 132 13 1 4469 4600 78455749 78455879 1.630000e-36 165.0
42 TraesCS7B01G020300 chr2B 90.528 739 63 6 6554 7288 110492305 110491570 0.000000e+00 970.0
43 TraesCS7B01G020300 chr2B 80.441 363 53 7 2479 2840 319927104 319926759 2.020000e-65 261.0
44 TraesCS7B01G020300 chr2B 94.444 54 3 0 3430 3483 329477130 329477183 4.690000e-12 84.2
45 TraesCS7B01G020300 chr2D 89.396 745 65 7 6554 7294 626642515 626641781 0.000000e+00 926.0
46 TraesCS7B01G020300 chr2D 83.288 371 37 15 2488 2850 515806122 515806475 1.180000e-82 318.0
47 TraesCS7B01G020300 chr2D 82.514 366 45 10 2480 2840 196004346 196003995 3.310000e-78 303.0
48 TraesCS7B01G020300 chr2D 82.173 359 34 14 2488 2837 117668201 117668538 1.550000e-71 281.0
49 TraesCS7B01G020300 chr2D 81.789 313 31 15 2526 2829 208476218 208476513 9.460000e-59 239.0
50 TraesCS7B01G020300 chr2D 83.962 106 17 0 97 202 339731145 339731040 1.290000e-17 102.0
51 TraesCS7B01G020300 chr2D 75.694 144 27 6 2864 3006 29260968 29260832 1.700000e-06 65.8
52 TraesCS7B01G020300 chr2D 90.000 50 5 0 2851 2900 619277493 619277444 1.700000e-06 65.8
53 TraesCS7B01G020300 chr3A 89.023 747 73 7 6554 7294 466578973 466578230 0.000000e+00 917.0
54 TraesCS7B01G020300 chr3A 80.925 346 46 9 2494 2836 166861443 166861115 9.390000e-64 255.0
55 TraesCS7B01G020300 chr3A 81.967 183 28 4 494 675 741158314 741158136 4.560000e-32 150.0
56 TraesCS7B01G020300 chr3A 86.957 69 6 2 220 285 681555772 681555704 2.820000e-09 75.0
57 TraesCS7B01G020300 chr3B 88.889 747 75 8 6554 7294 169436132 169435388 0.000000e+00 913.0
58 TraesCS7B01G020300 chr3B 86.207 174 18 3 491 661 780516146 780516316 4.490000e-42 183.0
59 TraesCS7B01G020300 chr3B 90.000 60 6 0 220 279 593937645 593937586 2.180000e-10 78.7
60 TraesCS7B01G020300 chr5A 89.422 709 67 7 6588 7294 686508712 686509414 0.000000e+00 887.0
61 TraesCS7B01G020300 chr5A 83.784 185 23 4 488 668 291594557 291594738 1.260000e-37 169.0
62 TraesCS7B01G020300 chr5A 82.812 192 19 7 498 683 343458423 343458606 7.570000e-35 159.0
63 TraesCS7B01G020300 chr5A 91.667 60 5 0 220 279 700311680 700311739 4.690000e-12 84.2
64 TraesCS7B01G020300 chr5A 90.196 51 5 0 3324 3374 534028840 534028890 4.720000e-07 67.6
65 TraesCS7B01G020300 chr4D 89.721 681 63 6 6617 7294 503365573 503366249 0.000000e+00 863.0
66 TraesCS7B01G020300 chr4D 87.752 743 69 6 6554 7292 79224502 79223778 0.000000e+00 848.0
67 TraesCS7B01G020300 chr4D 82.913 357 35 16 2488 2835 291249433 291249772 1.540000e-76 298.0
68 TraesCS7B01G020300 chr4D 87.701 187 14 4 491 671 362791992 362792175 7.420000e-50 209.0
69 TraesCS7B01G020300 chr4D 88.333 60 7 0 220 279 425705000 425705059 1.020000e-08 73.1
70 TraesCS7B01G020300 chr4D 92.000 50 3 1 229 278 44636885 44636837 1.310000e-07 69.4
71 TraesCS7B01G020300 chr4D 89.091 55 6 0 281 335 67327778 67327724 1.310000e-07 69.4
72 TraesCS7B01G020300 chr2A 88.136 708 71 9 6588 7292 542757420 542758117 0.000000e+00 830.0
73 TraesCS7B01G020300 chr2A 84.615 195 21 5 479 668 739854801 739854611 1.250000e-42 185.0
74 TraesCS7B01G020300 chr2A 75.862 145 26 7 2864 3004 31405572 31405433 1.700000e-06 65.8
75 TraesCS7B01G020300 chr1D 82.961 358 35 14 2488 2837 196701107 196701446 4.280000e-77 300.0
76 TraesCS7B01G020300 chr1D 87.356 87 10 1 2401 2487 478140315 478140230 1.670000e-16 99.0
77 TraesCS7B01G020300 chr1D 86.250 80 10 1 2406 2485 404253212 404253134 1.300000e-12 86.1
78 TraesCS7B01G020300 chr1D 100.000 28 0 0 281 308 362259601 362259574 1.300000e-02 52.8
79 TraesCS7B01G020300 chr1A 81.513 357 42 14 2489 2837 145011218 145011558 9.320000e-69 272.0
80 TraesCS7B01G020300 chr1A 80.980 347 46 9 2491 2835 470788208 470788536 2.610000e-64 257.0
81 TraesCS7B01G020300 chr6D 82.803 314 27 15 2526 2829 264060133 264060429 9.390000e-64 255.0
82 TraesCS7B01G020300 chr6D 87.356 87 8 3 2402 2487 445419819 445419735 6.020000e-16 97.1
83 TraesCS7B01G020300 chr6D 85.106 94 11 3 2395 2487 132312147 132312238 7.790000e-15 93.5
84 TraesCS7B01G020300 chr6D 100.000 28 0 0 281 308 23368823 23368850 1.300000e-02 52.8
85 TraesCS7B01G020300 chr6B 87.709 179 21 1 2659 2837 692779515 692779692 2.670000e-49 207.0
86 TraesCS7B01G020300 chr3D 87.432 183 14 4 491 668 442497567 442497745 1.240000e-47 202.0
87 TraesCS7B01G020300 chr3D 89.655 87 8 1 2401 2487 159794507 159794592 7.740000e-20 110.0
88 TraesCS7B01G020300 chr5B 83.060 183 26 5 3304 3483 532460253 532460073 2.110000e-35 161.0
89 TraesCS7B01G020300 chr5B 88.333 60 7 0 220 279 650178571 650178630 1.020000e-08 73.1
90 TraesCS7B01G020300 chr5B 88.235 51 6 0 3311 3361 22766114 22766064 2.200000e-05 62.1
91 TraesCS7B01G020300 chr5B 84.375 64 9 1 3311 3373 22766477 22766414 2.200000e-05 62.1
92 TraesCS7B01G020300 chr5B 100.000 28 0 0 3326 3353 493975590 493975617 1.300000e-02 52.8
93 TraesCS7B01G020300 chr5D 81.622 185 27 6 3304 3483 437990267 437990085 5.900000e-31 147.0
94 TraesCS7B01G020300 chr5D 88.506 87 9 1 2401 2487 315935976 315936061 3.600000e-18 104.0
95 TraesCS7B01G020300 chr4B 82.237 152 17 8 3292 3440 653432493 653432637 9.940000e-24 122.0
96 TraesCS7B01G020300 chr4B 82.906 117 16 4 3292 3405 653008832 653008717 1.290000e-17 102.0
97 TraesCS7B01G020300 chr4B 75.568 176 34 6 1561 1730 632399573 632399745 2.180000e-10 78.7
98 TraesCS7B01G020300 chr1B 86.316 95 10 3 2394 2487 104349625 104349717 4.660000e-17 100.0
99 TraesCS7B01G020300 chr6A 85.106 94 11 3 2395 2487 171459273 171459364 7.790000e-15 93.5
100 TraesCS7B01G020300 chr6A 88.136 59 6 1 220 278 32228018 32228075 1.310000e-07 69.4
101 TraesCS7B01G020300 chr4A 91.667 60 5 0 220 279 183617390 183617331 4.690000e-12 84.2
102 TraesCS7B01G020300 chr4A 80.952 105 19 1 4983 5086 500109744 500109848 1.690000e-11 82.4
103 TraesCS7B01G020300 chr4A 100.000 28 0 0 285 312 681706379 681706406 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G020300 chr7B 17841287 17848580 7293 True 4527.666667 13470 98.039333 1 7294 3 chr7B.!!$R3 7293
1 TraesCS7B01G020300 chr7B 18097162 18098058 896 True 1210.000000 1210 91.000000 5433 6332 1 chr7B.!!$R1 899
2 TraesCS7B01G020300 chr7B 17662319 17666901 4582 False 853.000000 1698 87.188800 1007 6343 5 chr7B.!!$F3 5336
3 TraesCS7B01G020300 chr7B 18102313 18103444 1131 True 575.000000 789 86.688000 1084 2168 2 chr7B.!!$R4 1084
4 TraesCS7B01G020300 chr7D 74446426 74452728 6302 True 1535.600000 2398 91.686600 1032 6444 5 chr7D.!!$R2 5412
5 TraesCS7B01G020300 chr7D 74581270 74582209 939 True 1221.000000 1221 90.074000 5386 6332 1 chr7D.!!$R1 946
6 TraesCS7B01G020300 chr7D 613462644 613463375 731 False 856.000000 856 87.785000 6554 7294 1 chr7D.!!$F1 740
7 TraesCS7B01G020300 chr7D 74416999 74422614 5615 False 692.614286 1714 87.680571 673 6474 7 chr7D.!!$F2 5801
8 TraesCS7B01G020300 chr7D 74470150 74471690 1540 True 627.500000 926 90.939000 1 996 2 chr7D.!!$R3 995
9 TraesCS7B01G020300 chr7D 74586519 74587654 1135 True 605.500000 826 87.318500 1084 2176 2 chr7D.!!$R4 1092
10 TraesCS7B01G020300 chr7A 78463882 78469487 5605 True 1186.000000 1249 88.270500 1065 6331 2 chr7A.!!$R2 5266
11 TraesCS7B01G020300 chr7A 78452036 78459825 7789 False 695.000000 1740 88.921500 673 6166 6 chr7A.!!$F2 5493
12 TraesCS7B01G020300 chr2B 110491570 110492305 735 True 970.000000 970 90.528000 6554 7288 1 chr2B.!!$R1 734
13 TraesCS7B01G020300 chr2D 626641781 626642515 734 True 926.000000 926 89.396000 6554 7294 1 chr2D.!!$R5 740
14 TraesCS7B01G020300 chr3A 466578230 466578973 743 True 917.000000 917 89.023000 6554 7294 1 chr3A.!!$R2 740
15 TraesCS7B01G020300 chr3B 169435388 169436132 744 True 913.000000 913 88.889000 6554 7294 1 chr3B.!!$R1 740
16 TraesCS7B01G020300 chr5A 686508712 686509414 702 False 887.000000 887 89.422000 6588 7294 1 chr5A.!!$F4 706
17 TraesCS7B01G020300 chr4D 503365573 503366249 676 False 863.000000 863 89.721000 6617 7294 1 chr4D.!!$F4 677
18 TraesCS7B01G020300 chr4D 79223778 79224502 724 True 848.000000 848 87.752000 6554 7292 1 chr4D.!!$R3 738
19 TraesCS7B01G020300 chr2A 542757420 542758117 697 False 830.000000 830 88.136000 6588 7292 1 chr2A.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 997 0.250553 AAAGCCCATCGAAACACCGA 60.251 50.000 0.00 0.00 43.16 4.69 F
1223 1816 0.389817 TGCATCCTACTCGTGTGTGC 60.390 55.000 0.00 6.33 0.00 4.57 F
1514 2135 0.108329 CATGGCCGTCCTCGTAAGTT 60.108 55.000 0.00 0.00 39.48 2.66 F
1546 2214 0.857311 GCGCGTGCACATGTATGTTC 60.857 55.000 17.66 0.00 39.39 3.18 F
2924 4062 1.559682 ACATTGTAGGTCCTTGCGGAT 59.440 47.619 0.00 0.00 42.43 4.18 F
3864 5849 0.586319 ACATACTTGTGTGTGTGCGC 59.414 50.000 0.00 0.00 44.82 6.09 F
4470 7273 0.035458 TGTGTGTGTGTGTGTGTGGA 59.965 50.000 0.00 0.00 0.00 4.02 F
6216 13341 0.179124 GAACCTCTACTGGCTGCTCG 60.179 60.000 0.00 0.00 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1893 0.527565 GGCCACTGCAAACATCGATT 59.472 50.000 0.00 0.0 40.13 3.34 R
2791 3790 0.391528 TGATGATGGTGTGTCTGCCG 60.392 55.000 0.00 0.0 0.00 5.69 R
2793 3792 1.089920 GGTGATGATGGTGTGTCTGC 58.910 55.000 0.00 0.0 0.00 4.26 R
3358 4506 2.601314 CTCGCGTAAAATCGAATGGTGA 59.399 45.455 5.77 0.0 34.07 4.02 R
4455 7258 0.901827 AGTCTCCACACACACACACA 59.098 50.000 0.00 0.0 0.00 3.72 R
5052 10029 0.105964 CAAGTCTTCGACACCCCACA 59.894 55.000 0.00 0.0 34.60 4.17 R
6242 13367 0.533491 TGGCGCACGTAAGGAAGTAT 59.467 50.000 10.83 0.0 46.39 2.12 R
7212 14383 1.136305 TGGCCTCGTATGCTCTAACAC 59.864 52.381 3.32 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.031751 TGTATTGAAACAAACCCATTAGGC 57.968 37.500 0.00 0.00 40.58 3.93
94 98 0.468226 TCAGACCTTCTGGCGTTGTT 59.532 50.000 3.40 0.00 44.39 2.83
113 117 6.192137 CGTTGTTTGTTTAGTTGAAGAAGACG 59.808 38.462 0.00 0.00 0.00 4.18
143 147 4.357142 GACTACAAAGACGTCTGTGACAA 58.643 43.478 36.56 21.53 34.81 3.18
167 171 8.344831 CAACTTTGTCAATCTCAAGATGTTGTA 58.655 33.333 2.11 0.00 34.49 2.41
182 186 9.029243 CAAGATGTTGTATCAACTCAGTATCTC 57.971 37.037 12.66 0.42 0.00 2.75
192 196 4.829064 ACTCAGTATCTCGAAGATGCTC 57.171 45.455 10.77 2.57 42.80 4.26
219 223 4.421948 GAGTAAGATGGACGTGTGTAAGG 58.578 47.826 0.00 0.00 0.00 2.69
227 753 2.226437 GGACGTGTGTAAGGACTACGAA 59.774 50.000 0.00 0.00 38.97 3.85
231 757 3.572584 GTGTGTAAGGACTACGAAGTGG 58.427 50.000 0.00 0.00 45.73 4.00
237 763 1.089920 GGACTACGAAGTGGCTACGA 58.910 55.000 0.00 0.00 45.31 3.43
245 771 2.415491 CGAAGTGGCTACGATGACTTCA 60.415 50.000 0.00 0.00 42.94 3.02
254 780 7.011482 GTGGCTACGATGACTTCATAAAATCTT 59.989 37.037 0.00 0.00 36.57 2.40
287 813 0.902516 GGCTCAGTCTCAGGGTGAGT 60.903 60.000 3.92 0.00 44.58 3.41
292 818 3.092301 TCAGTCTCAGGGTGAGTGTATG 58.908 50.000 3.92 0.57 44.58 2.39
293 819 2.828520 CAGTCTCAGGGTGAGTGTATGT 59.171 50.000 3.92 0.00 44.58 2.29
306 832 7.708322 GGGTGAGTGTATGTGCATATATATGAG 59.292 40.741 24.06 1.61 35.75 2.90
309 835 6.867550 AGTGTATGTGCATATATATGAGCGT 58.132 36.000 24.06 17.56 35.75 5.07
312 838 9.083080 GTGTATGTGCATATATATGAGCGTTTA 57.917 33.333 24.06 6.66 35.75 2.01
372 898 5.289193 GCTAACATGCAACATTGTACCATTG 59.711 40.000 0.00 0.00 0.00 2.82
436 962 7.934665 AGTGTGTGTGGATTAGTAAATAACACA 59.065 33.333 17.37 17.37 43.54 3.72
450 976 7.888021 AGTAAATAACACAGAATCACATCCCAA 59.112 33.333 0.00 0.00 0.00 4.12
451 977 6.515272 AATAACACAGAATCACATCCCAAC 57.485 37.500 0.00 0.00 0.00 3.77
471 997 0.250553 AAAGCCCATCGAAACACCGA 60.251 50.000 0.00 0.00 43.16 4.69
531 1057 9.998752 ATCTAGATATGCCCTAGTAGTTATTGT 57.001 33.333 2.53 0.00 36.06 2.71
557 1083 7.559486 ACATCTAAGTCACTCAATCAAGCATA 58.441 34.615 0.00 0.00 0.00 3.14
564 1090 5.645497 GTCACTCAATCAAGCATAAGAAGGT 59.355 40.000 0.00 0.00 0.00 3.50
569 1095 7.088589 TCAATCAAGCATAAGAAGGTAAAGC 57.911 36.000 0.00 0.00 0.00 3.51
574 1100 7.721402 TCAAGCATAAGAAGGTAAAGCAAAAA 58.279 30.769 0.00 0.00 0.00 1.94
617 1149 5.001237 TCCGCGTAAGATCAATGACTTAA 57.999 39.130 4.92 0.00 43.02 1.85
624 1156 8.533153 GCGTAAGATCAATGACTTAAGACTTAC 58.467 37.037 10.09 12.37 43.02 2.34
680 1212 8.488979 GCTTTAGCAAAACGGTGTATATATTG 57.511 34.615 0.00 0.00 41.59 1.90
686 1218 8.395633 AGCAAAACGGTGTATATATTGAAAGTC 58.604 33.333 0.00 0.00 0.00 3.01
709 1249 8.352942 AGTCTGTATTTTCGAATTGCTCTTTTT 58.647 29.630 0.00 0.00 0.00 1.94
770 1321 9.690913 ATCAGATTATATACCACCATCCAATTG 57.309 33.333 0.00 0.00 0.00 2.32
792 1348 5.646606 TGTTAATCTATTTGAAAAGCGGGC 58.353 37.500 0.00 0.00 0.00 6.13
980 1551 5.726308 TGATATAATAGCCATGCCACCTAGT 59.274 40.000 0.00 0.00 0.00 2.57
981 1552 6.215431 TGATATAATAGCCATGCCACCTAGTT 59.785 38.462 0.00 0.00 0.00 2.24
982 1553 3.669939 AATAGCCATGCCACCTAGTTT 57.330 42.857 0.00 0.00 0.00 2.66
983 1554 3.669939 ATAGCCATGCCACCTAGTTTT 57.330 42.857 0.00 0.00 0.00 2.43
984 1555 4.788925 ATAGCCATGCCACCTAGTTTTA 57.211 40.909 0.00 0.00 0.00 1.52
985 1556 2.723273 AGCCATGCCACCTAGTTTTAC 58.277 47.619 0.00 0.00 0.00 2.01
986 1557 1.400494 GCCATGCCACCTAGTTTTACG 59.600 52.381 0.00 0.00 0.00 3.18
987 1558 1.400494 CCATGCCACCTAGTTTTACGC 59.600 52.381 0.00 0.00 0.00 4.42
988 1559 2.356135 CATGCCACCTAGTTTTACGCT 58.644 47.619 0.00 0.00 0.00 5.07
989 1560 1.803334 TGCCACCTAGTTTTACGCTG 58.197 50.000 0.00 0.00 0.00 5.18
990 1561 0.446616 GCCACCTAGTTTTACGCTGC 59.553 55.000 0.00 0.00 0.00 5.25
991 1562 1.803334 CCACCTAGTTTTACGCTGCA 58.197 50.000 0.00 0.00 0.00 4.41
992 1563 1.463444 CCACCTAGTTTTACGCTGCAC 59.537 52.381 0.00 0.00 0.00 4.57
993 1564 2.139917 CACCTAGTTTTACGCTGCACA 58.860 47.619 0.00 0.00 0.00 4.57
994 1565 2.742053 CACCTAGTTTTACGCTGCACAT 59.258 45.455 0.00 0.00 0.00 3.21
995 1566 3.930229 CACCTAGTTTTACGCTGCACATA 59.070 43.478 0.00 0.00 0.00 2.29
996 1567 4.570772 CACCTAGTTTTACGCTGCACATAT 59.429 41.667 0.00 0.00 0.00 1.78
997 1568 4.570772 ACCTAGTTTTACGCTGCACATATG 59.429 41.667 0.00 0.00 0.00 1.78
1015 1586 2.889170 TGCCATGCCACCTAGTTTTA 57.111 45.000 0.00 0.00 0.00 1.52
1027 1598 3.930848 ACCTAGTTTTACGCTGCACATAC 59.069 43.478 0.00 0.00 0.00 2.39
1028 1599 4.181578 CCTAGTTTTACGCTGCACATACT 58.818 43.478 0.00 0.00 0.00 2.12
1046 1618 1.756375 CTCATGACTTACGCCTGCGC 61.756 60.000 12.03 0.00 44.19 6.09
1049 1621 3.248171 GACTTACGCCTGCGCTCG 61.248 66.667 9.73 12.29 44.19 5.03
1223 1816 0.389817 TGCATCCTACTCGTGTGTGC 60.390 55.000 0.00 6.33 0.00 4.57
1275 1893 1.005037 GTGTCTGGCCGTGTGATCA 60.005 57.895 0.00 0.00 0.00 2.92
1300 1918 2.869101 TGTTTGCAGTGGCCATACTA 57.131 45.000 9.72 0.00 40.13 1.82
1514 2135 0.108329 CATGGCCGTCCTCGTAAGTT 60.108 55.000 0.00 0.00 39.48 2.66
1546 2214 0.857311 GCGCGTGCACATGTATGTTC 60.857 55.000 17.66 0.00 39.39 3.18
1551 2249 4.028383 GCGTGCACATGTATGTTCATTAC 58.972 43.478 18.64 0.00 39.39 1.89
2089 2802 6.046290 AGTTGAAGTTTTACTACGGGCTAT 57.954 37.500 0.00 0.00 0.00 2.97
2103 2816 1.737816 GCTATGTAGGGGCGACGAA 59.262 57.895 0.00 0.00 0.00 3.85
2207 2922 2.304761 GGTGTGGTTAGGTCTCAATCCA 59.695 50.000 0.00 0.00 0.00 3.41
2209 2924 3.008049 GTGTGGTTAGGTCTCAATCCACT 59.992 47.826 12.25 0.00 43.64 4.00
2210 2925 3.007940 TGTGGTTAGGTCTCAATCCACTG 59.992 47.826 12.25 0.00 43.64 3.66
2211 2926 3.260884 GTGGTTAGGTCTCAATCCACTGA 59.739 47.826 0.00 0.00 41.14 3.41
2212 2927 3.515502 TGGTTAGGTCTCAATCCACTGAG 59.484 47.826 0.00 0.00 43.62 3.35
2223 2938 8.728337 TCTCAATCCACTGAGATTTAATCAAG 57.272 34.615 7.74 6.88 45.45 3.02
2224 2939 8.324306 TCTCAATCCACTGAGATTTAATCAAGT 58.676 33.333 7.74 7.47 45.45 3.16
2225 2940 8.498054 TCAATCCACTGAGATTTAATCAAGTC 57.502 34.615 7.74 0.00 34.19 3.01
2226 2941 8.324306 TCAATCCACTGAGATTTAATCAAGTCT 58.676 33.333 7.74 0.00 34.19 3.24
2227 2942 8.954350 CAATCCACTGAGATTTAATCAAGTCTT 58.046 33.333 7.74 2.31 34.19 3.01
2228 2943 8.729805 ATCCACTGAGATTTAATCAAGTCTTC 57.270 34.615 7.74 0.00 31.40 2.87
2229 2944 6.813649 TCCACTGAGATTTAATCAAGTCTTCG 59.186 38.462 7.74 0.00 31.40 3.79
2230 2945 6.591834 CCACTGAGATTTAATCAAGTCTTCGT 59.408 38.462 7.74 0.00 31.40 3.85
2231 2946 7.118390 CCACTGAGATTTAATCAAGTCTTCGTT 59.882 37.037 7.74 0.00 31.40 3.85
2232 2947 8.499162 CACTGAGATTTAATCAAGTCTTCGTTT 58.501 33.333 7.74 0.00 31.40 3.60
2233 2948 9.057089 ACTGAGATTTAATCAAGTCTTCGTTTT 57.943 29.630 7.74 0.00 31.40 2.43
2236 2951 9.974750 GAGATTTAATCAAGTCTTCGTTTTAGG 57.025 33.333 7.74 0.00 31.40 2.69
2237 2952 9.720769 AGATTTAATCAAGTCTTCGTTTTAGGA 57.279 29.630 7.74 0.00 26.81 2.94
2245 2960 9.496873 TCAAGTCTTCGTTTTAGGATTTAATCA 57.503 29.630 7.29 0.00 0.00 2.57
2259 2974 7.461749 AGGATTTAATCAAGTCTTGGTCAAGA 58.538 34.615 12.66 9.13 44.47 3.02
2263 2978 3.371102 TCAAGTCTTGGTCAAGAGACG 57.629 47.619 13.06 5.53 46.93 4.18
2274 2989 3.684788 GGTCAAGAGACGTAACATGCAAT 59.315 43.478 0.00 0.00 45.92 3.56
2276 2991 5.005779 GGTCAAGAGACGTAACATGCAATAG 59.994 44.000 0.00 0.00 45.92 1.73
2279 2994 4.938080 AGAGACGTAACATGCAATAGAGG 58.062 43.478 0.00 0.00 0.00 3.69
2342 3057 6.724694 AGATCTCACCGTTATAGTATCGAC 57.275 41.667 0.00 0.00 0.00 4.20
2348 3063 6.228995 TCACCGTTATAGTATCGACTGAGAT 58.771 40.000 0.00 0.00 36.28 2.75
2386 3101 2.416162 CGACTGGGACTTAGCAAGACTC 60.416 54.545 3.37 0.00 0.00 3.36
2399 3114 9.944376 ACTTAGCAAGACTCTTTGTTTATATCA 57.056 29.630 3.37 0.00 0.00 2.15
2509 3506 2.353376 GCAATGTGCACGTGCGTT 60.353 55.556 33.22 24.24 44.26 4.84
2628 3626 9.983024 TTCACTCAAAATATATTCCTTGGGTTA 57.017 29.630 11.21 3.60 30.03 2.85
2650 3649 8.576442 GGTTATTTTGATGAGGTATATGGTTGG 58.424 37.037 0.00 0.00 0.00 3.77
2671 3670 7.123547 GGTTGGTTTTGATGAGGAATATGGTTA 59.876 37.037 0.00 0.00 0.00 2.85
2710 3709 3.073209 GGGTTTCCTTTAAATTGGGGCAA 59.927 43.478 0.00 0.00 0.00 4.52
2715 3714 5.482163 TCCTTTAAATTGGGGCAAAGAAG 57.518 39.130 0.00 0.00 31.11 2.85
2737 3736 4.937015 AGTGGGATATTGTTGCAAAAATGC 59.063 37.500 22.67 14.64 0.00 3.56
2741 3740 5.220892 GGGATATTGTTGCAAAAATGCCATG 60.221 40.000 25.30 0.00 0.00 3.66
2752 3751 2.154567 AATGCCATGACTTGCCTCAT 57.845 45.000 0.00 0.00 0.00 2.90
2793 3792 2.373540 TGGTCAGAAATAACGGACGG 57.626 50.000 0.00 0.00 36.23 4.79
2924 4062 1.559682 ACATTGTAGGTCCTTGCGGAT 59.440 47.619 0.00 0.00 42.43 4.18
3384 4533 3.811307 TTCGATTTTACGCGAGATTCG 57.189 42.857 15.93 14.48 43.89 3.34
3641 4963 2.022195 AGCTACCACGTCGACACATAT 58.978 47.619 17.16 0.00 0.00 1.78
3673 5000 8.706322 ATGTTTGTTGAAATAGTTAGGTTCCT 57.294 30.769 0.00 0.00 0.00 3.36
3676 5003 9.459640 GTTTGTTGAAATAGTTAGGTTCCTTTC 57.540 33.333 0.00 0.00 0.00 2.62
3720 5050 8.189119 TGTGCTAAAAATCAATTAGGTTCCTT 57.811 30.769 0.00 0.00 32.24 3.36
3778 5120 1.406341 GGAAGTATACAGGGCAACGCA 60.406 52.381 5.50 0.00 37.60 5.24
3817 5163 4.081476 CACAGGACCATACTGATCTTGACA 60.081 45.833 0.00 0.00 39.24 3.58
3831 5208 7.592533 ACTGATCTTGACATGTTTTCATTTTCG 59.407 33.333 0.00 0.00 38.64 3.46
3848 5225 3.634568 TTCGTTTTTCCATCGCAACAT 57.365 38.095 0.00 0.00 0.00 2.71
3861 5846 2.286563 TCGCAACATACTTGTGTGTGTG 59.713 45.455 4.03 6.30 45.58 3.82
3862 5847 2.384382 GCAACATACTTGTGTGTGTGC 58.616 47.619 15.36 15.36 45.58 4.57
3863 5848 2.638673 CAACATACTTGTGTGTGTGCG 58.361 47.619 4.03 0.00 45.58 5.34
3864 5849 0.586319 ACATACTTGTGTGTGTGCGC 59.414 50.000 0.00 0.00 44.82 6.09
3883 5870 1.866471 GCGCCCAACTTTGTACCAAAC 60.866 52.381 0.00 0.00 0.00 2.93
3886 5873 2.367241 GCCCAACTTTGTACCAAACCAT 59.633 45.455 0.00 0.00 0.00 3.55
3975 5970 4.210120 GGCAAAATACTCAGTAGATCTGCG 59.790 45.833 5.18 0.88 43.32 5.18
3986 5982 3.990469 AGTAGATCTGCGACAACAAACAG 59.010 43.478 5.18 0.00 0.00 3.16
4163 6287 5.506649 GGGCTTTTGAAAACGAGACATTACA 60.507 40.000 0.00 0.00 0.00 2.41
4307 6751 2.514803 GAGTATGTGGCAAGGGTTGTT 58.485 47.619 0.00 0.00 0.00 2.83
4350 6797 3.967987 ACTCCCACCTCCACACTATAATC 59.032 47.826 0.00 0.00 0.00 1.75
4352 6799 3.967326 TCCCACCTCCACACTATAATCAG 59.033 47.826 0.00 0.00 0.00 2.90
4455 7258 2.359214 TGTTTTGTGTGTGTGTGTGTGT 59.641 40.909 0.00 0.00 0.00 3.72
4456 7259 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
4457 7260 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
4458 7261 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4459 7262 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4460 7263 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4461 7264 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4462 7265 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4463 7266 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4464 7267 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4465 7268 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4466 7269 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4467 7270 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4468 7271 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4469 7272 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
4470 7273 0.035458 TGTGTGTGTGTGTGTGTGGA 59.965 50.000 0.00 0.00 0.00 4.02
4479 7282 1.138859 TGTGTGTGTGGAGACTGAAGG 59.861 52.381 0.00 0.00 0.00 3.46
4622 7593 8.932791 ACTAGATTTTGTCGGTTTATAACAGTG 58.067 33.333 0.00 0.00 0.00 3.66
4667 8027 3.927854 TCGAATACGTCCATGTCCAAAA 58.072 40.909 0.00 0.00 40.69 2.44
4669 8029 3.482923 CGAATACGTCCATGTCCAAAACG 60.483 47.826 0.00 0.00 39.16 3.60
4769 8129 0.698238 ATGCCACCTACCAGCTTTGA 59.302 50.000 0.00 0.00 0.00 2.69
4770 8130 0.698238 TGCCACCTACCAGCTTTGAT 59.302 50.000 0.00 0.00 0.00 2.57
4810 8170 7.118825 GGTAAAATTAACATATACTCCCTCCGC 59.881 40.741 0.00 0.00 0.00 5.54
4833 9083 2.688958 CCAACGGAGAGAGTAGTAAGGG 59.311 54.545 0.00 0.00 0.00 3.95
4843 9093 7.013559 GGAGAGAGTAGTAAGGGTCAACTATTC 59.986 44.444 0.00 0.00 36.00 1.75
4996 9840 4.696479 AGGCCTGAGGTCACATATTAAG 57.304 45.455 3.11 0.00 0.00 1.85
4999 9843 4.816925 GGCCTGAGGTCACATATTAAGTTC 59.183 45.833 0.00 0.00 0.00 3.01
5094 10072 2.714793 TCCTCCTACATCCATAGACGGA 59.285 50.000 0.00 0.00 40.07 4.69
5113 10091 3.181482 CGGAGTGTCATGAACATAGCTCT 60.181 47.826 0.00 0.00 40.80 4.09
5394 10563 0.951558 ACGAACACAAATGGCACTCC 59.048 50.000 0.00 0.00 0.00 3.85
5431 10903 8.965819 ACTACTGCCTGATATATATGAGAAGTG 58.034 37.037 18.84 13.89 0.00 3.16
5464 12572 3.407698 TGACATGCACTTATTTCCACGT 58.592 40.909 0.00 0.00 0.00 4.49
5812 12930 3.859414 GCTCTGGAGGCGGCTCAT 61.859 66.667 36.07 4.89 0.00 2.90
5899 13017 1.518352 CGTCCGCCATCATCGAACA 60.518 57.895 0.00 0.00 0.00 3.18
6216 13341 0.179124 GAACCTCTACTGGCTGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
6297 13425 1.134670 AGAACATCGGCAAGTAGCTCC 60.135 52.381 0.00 0.00 44.79 4.70
6301 13429 2.317149 ATCGGCAAGTAGCTCCAGCC 62.317 60.000 8.80 8.80 44.79 4.85
6336 13485 4.093408 ACACTCGTTGCTATATGTGCTTTG 59.907 41.667 0.00 0.00 0.00 2.77
6349 13498 0.107410 TGCTTTGGGTGTGACGAACT 60.107 50.000 0.00 0.00 0.00 3.01
6363 13512 2.673368 GACGAACTATCAGTTTGGCAGG 59.327 50.000 7.18 0.00 45.18 4.85
6384 13533 0.040246 GAGATACGTACGGCTCCTGC 60.040 60.000 21.06 4.79 38.76 4.85
6403 13552 1.139853 GCCGATCCAAGACAGATTCCT 59.860 52.381 0.00 0.00 0.00 3.36
6418 13567 4.218417 CAGATTCCTTGACCCGTTCAAAAT 59.782 41.667 0.00 0.00 43.90 1.82
6454 13604 6.945938 TGTTGATACTAGACTAGAAGGAGC 57.054 41.667 16.55 2.34 0.00 4.70
6457 13607 5.299148 TGATACTAGACTAGAAGGAGCGTC 58.701 45.833 16.55 3.33 0.00 5.19
6482 13632 4.970472 CACGTTTTGCTGCATAATTTGT 57.030 36.364 1.84 3.12 0.00 2.83
6483 13633 4.690096 CACGTTTTGCTGCATAATTTGTG 58.310 39.130 1.84 11.31 0.00 3.33
6484 13634 4.208873 CACGTTTTGCTGCATAATTTGTGT 59.791 37.500 18.24 8.50 0.00 3.72
6485 13635 4.808364 ACGTTTTGCTGCATAATTTGTGTT 59.192 33.333 1.84 0.00 0.00 3.32
6486 13636 5.980116 ACGTTTTGCTGCATAATTTGTGTTA 59.020 32.000 1.84 0.00 0.00 2.41
6487 13637 6.644592 ACGTTTTGCTGCATAATTTGTGTTAT 59.355 30.769 1.84 0.00 0.00 1.89
6488 13638 7.170658 ACGTTTTGCTGCATAATTTGTGTTATT 59.829 29.630 1.84 0.00 0.00 1.40
6489 13639 8.642885 CGTTTTGCTGCATAATTTGTGTTATTA 58.357 29.630 1.84 0.00 0.00 0.98
6490 13640 9.956797 GTTTTGCTGCATAATTTGTGTTATTAG 57.043 29.630 1.84 0.00 0.00 1.73
6491 13641 9.920133 TTTTGCTGCATAATTTGTGTTATTAGA 57.080 25.926 1.84 0.00 0.00 2.10
6492 13642 9.920133 TTTGCTGCATAATTTGTGTTATTAGAA 57.080 25.926 1.84 0.00 0.00 2.10
6524 13674 9.819267 AAAAATAAAAATTAGTTTGACGGGTGA 57.181 25.926 0.00 0.00 0.00 4.02
6525 13675 9.471084 AAAATAAAAATTAGTTTGACGGGTGAG 57.529 29.630 0.00 0.00 0.00 3.51
6526 13676 7.989416 ATAAAAATTAGTTTGACGGGTGAGA 57.011 32.000 0.00 0.00 0.00 3.27
6527 13677 6.702716 AAAAATTAGTTTGACGGGTGAGAA 57.297 33.333 0.00 0.00 0.00 2.87
6528 13678 6.702716 AAAATTAGTTTGACGGGTGAGAAA 57.297 33.333 0.00 0.00 0.00 2.52
6529 13679 5.941948 AATTAGTTTGACGGGTGAGAAAG 57.058 39.130 0.00 0.00 0.00 2.62
6530 13680 4.675976 TTAGTTTGACGGGTGAGAAAGA 57.324 40.909 0.00 0.00 0.00 2.52
6531 13681 3.771577 AGTTTGACGGGTGAGAAAGAT 57.228 42.857 0.00 0.00 0.00 2.40
6532 13682 3.403038 AGTTTGACGGGTGAGAAAGATG 58.597 45.455 0.00 0.00 0.00 2.90
6533 13683 3.071023 AGTTTGACGGGTGAGAAAGATGA 59.929 43.478 0.00 0.00 0.00 2.92
6534 13684 3.981071 TTGACGGGTGAGAAAGATGAT 57.019 42.857 0.00 0.00 0.00 2.45
6535 13685 5.046591 AGTTTGACGGGTGAGAAAGATGATA 60.047 40.000 0.00 0.00 0.00 2.15
6536 13686 5.414789 TTGACGGGTGAGAAAGATGATAA 57.585 39.130 0.00 0.00 0.00 1.75
6537 13687 5.414789 TGACGGGTGAGAAAGATGATAAA 57.585 39.130 0.00 0.00 0.00 1.40
6538 13688 5.989477 TGACGGGTGAGAAAGATGATAAAT 58.011 37.500 0.00 0.00 0.00 1.40
6539 13689 6.414732 TGACGGGTGAGAAAGATGATAAATT 58.585 36.000 0.00 0.00 0.00 1.82
6540 13690 6.316140 TGACGGGTGAGAAAGATGATAAATTG 59.684 38.462 0.00 0.00 0.00 2.32
6541 13691 6.180472 ACGGGTGAGAAAGATGATAAATTGT 58.820 36.000 0.00 0.00 0.00 2.71
6542 13692 6.094048 ACGGGTGAGAAAGATGATAAATTGTG 59.906 38.462 0.00 0.00 0.00 3.33
6543 13693 6.316140 CGGGTGAGAAAGATGATAAATTGTGA 59.684 38.462 0.00 0.00 0.00 3.58
6544 13694 7.012704 CGGGTGAGAAAGATGATAAATTGTGAT 59.987 37.037 0.00 0.00 0.00 3.06
6545 13695 8.689972 GGGTGAGAAAGATGATAAATTGTGATT 58.310 33.333 0.00 0.00 0.00 2.57
6640 13790 3.617669 GTGTGTTGATCAAACGGTCAAG 58.382 45.455 10.35 0.00 42.10 3.02
6845 14005 0.522180 GAGTTTCGAGGCTCGTCTGA 59.478 55.000 33.31 14.23 41.35 3.27
6851 14011 2.366533 TCGAGGCTCGTCTGAATTAGT 58.633 47.619 33.31 0.00 41.35 2.24
6961 14121 4.207281 CTTGCTCGGGATCGGCGA 62.207 66.667 13.87 13.87 36.07 5.54
6990 14150 0.522180 ACGACTCAAGCAGGTACGAG 59.478 55.000 0.00 0.00 0.00 4.18
7049 14210 8.552865 TGTTTCAGAAATAAAAAGACGATTCGA 58.447 29.630 13.95 0.00 0.00 3.71
7058 14220 2.586258 AGACGATTCGATGGTGAAGG 57.414 50.000 13.95 0.00 0.00 3.46
7086 14249 5.499004 TCAGCAACAGGGTCTAGTTTTAT 57.501 39.130 0.00 0.00 0.00 1.40
7212 14383 2.738521 CGTTGGAGGAGCACACGG 60.739 66.667 0.00 0.00 0.00 4.94
7222 14393 0.319555 GAGCACACGGTGTTAGAGCA 60.320 55.000 19.36 0.00 35.75 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 98 5.457799 CGAGACGTCTTCTTCAACTAAACAA 59.542 40.000 21.08 0.00 33.22 2.83
143 147 6.949352 ACAACATCTTGAGATTGACAAAGT 57.051 33.333 0.00 0.00 31.21 2.66
152 156 7.619050 ACTGAGTTGATACAACATCTTGAGAT 58.381 34.615 15.29 0.00 34.56 2.75
153 157 6.997655 ACTGAGTTGATACAACATCTTGAGA 58.002 36.000 15.29 0.00 0.00 3.27
167 171 5.301551 AGCATCTTCGAGATACTGAGTTGAT 59.698 40.000 0.00 0.00 32.12 2.57
182 186 5.697473 TCTTACTCCTATGAGCATCTTCG 57.303 43.478 0.00 0.00 42.74 3.79
192 196 4.098044 ACACACGTCCATCTTACTCCTATG 59.902 45.833 0.00 0.00 0.00 2.23
219 223 2.353889 TCATCGTAGCCACTTCGTAGTC 59.646 50.000 0.00 0.00 30.26 2.59
227 753 5.339008 TTTATGAAGTCATCGTAGCCACT 57.661 39.130 0.00 0.00 37.76 4.00
229 755 6.582636 AGATTTTATGAAGTCATCGTAGCCA 58.417 36.000 0.00 0.00 37.76 4.75
245 771 9.950496 AGCCGACATATCATCTTAAGATTTTAT 57.050 29.630 15.49 11.93 31.21 1.40
254 780 5.073428 AGACTGAGCCGACATATCATCTTA 58.927 41.667 0.00 0.00 0.00 2.10
258 784 3.225940 TGAGACTGAGCCGACATATCAT 58.774 45.455 0.00 0.00 0.00 2.45
264 790 1.979155 CCCTGAGACTGAGCCGACA 60.979 63.158 0.00 0.00 0.00 4.35
266 792 1.979155 CACCCTGAGACTGAGCCGA 60.979 63.158 0.00 0.00 0.00 5.54
287 813 9.816354 ATAAACGCTCATATATATGCACATACA 57.184 29.630 16.59 2.30 33.76 2.29
292 818 8.323854 CAGACATAAACGCTCATATATATGCAC 58.676 37.037 16.59 10.33 33.76 4.57
293 819 8.034804 ACAGACATAAACGCTCATATATATGCA 58.965 33.333 16.59 6.34 33.76 3.96
306 832 6.880822 TGAACATAGTACAGACATAAACGC 57.119 37.500 0.00 0.00 0.00 4.84
337 863 2.416547 TGCATGTTAGCGCTTCTCTTTC 59.583 45.455 18.68 0.31 37.31 2.62
422 948 9.391006 GGGATGTGATTCTGTGTTATTTACTAA 57.609 33.333 0.00 0.00 0.00 2.24
436 962 2.827921 GGCTTTGTTGGGATGTGATTCT 59.172 45.455 0.00 0.00 0.00 2.40
450 976 0.958822 GGTGTTTCGATGGGCTTTGT 59.041 50.000 0.00 0.00 0.00 2.83
451 977 0.109781 CGGTGTTTCGATGGGCTTTG 60.110 55.000 0.00 0.00 0.00 2.77
482 1008 9.041354 AGATATGTCCTAGACAAACTCTTTTCT 57.959 33.333 0.91 0.00 45.96 2.52
510 1036 9.804758 GATGTACAATAACTACTAGGGCATATC 57.195 37.037 0.00 0.00 0.00 1.63
513 1039 7.857404 AGATGTACAATAACTACTAGGGCAT 57.143 36.000 0.00 0.00 0.00 4.40
531 1057 6.935167 TGCTTGATTGAGTGACTTAGATGTA 58.065 36.000 0.00 0.00 0.00 2.29
552 1078 6.493458 TCCTTTTTGCTTTACCTTCTTATGCT 59.507 34.615 0.00 0.00 0.00 3.79
564 1090 7.596995 CGTGTGGATATTTTCCTTTTTGCTTTA 59.403 33.333 0.00 0.00 45.68 1.85
569 1095 6.364976 GGTTCGTGTGGATATTTTCCTTTTTG 59.635 38.462 0.00 0.00 45.68 2.44
574 1100 4.514401 GAGGTTCGTGTGGATATTTTCCT 58.486 43.478 0.00 0.00 45.68 3.36
589 1121 0.099968 TGATCTTACGCGGAGGTTCG 59.900 55.000 12.47 0.00 0.00 3.95
617 1149 6.260936 GCCATAAGTATTGCACATGTAAGTCT 59.739 38.462 0.00 0.00 0.00 3.24
662 1194 9.702726 CAGACTTTCAATATATACACCGTTTTG 57.297 33.333 0.00 0.00 0.00 2.44
680 1212 7.522374 AGAGCAATTCGAAAATACAGACTTTC 58.478 34.615 0.00 0.00 0.00 2.62
770 1321 5.891451 AGCCCGCTTTTCAAATAGATTAAC 58.109 37.500 0.00 0.00 0.00 2.01
876 1433 5.226396 CAGCTATCTCTTTTGATACGAGGG 58.774 45.833 0.00 0.00 0.00 4.30
972 1543 1.463444 GTGCAGCGTAAAACTAGGTGG 59.537 52.381 0.00 0.00 34.36 4.61
990 1561 2.156917 CTAGGTGGCATGGCATATGTG 58.843 52.381 26.07 10.97 0.00 3.21
991 1562 1.776667 ACTAGGTGGCATGGCATATGT 59.223 47.619 26.07 17.62 0.00 2.29
992 1563 2.574006 ACTAGGTGGCATGGCATATG 57.426 50.000 26.07 17.02 0.00 1.78
993 1564 3.600448 AAACTAGGTGGCATGGCATAT 57.400 42.857 26.07 18.42 0.00 1.78
994 1565 3.380471 AAAACTAGGTGGCATGGCATA 57.620 42.857 26.07 13.48 0.00 3.14
995 1566 2.236489 AAAACTAGGTGGCATGGCAT 57.764 45.000 26.07 13.01 0.00 4.40
996 1567 2.442413 GTAAAACTAGGTGGCATGGCA 58.558 47.619 19.43 19.43 0.00 4.92
997 1568 1.400494 CGTAAAACTAGGTGGCATGGC 59.600 52.381 13.29 13.29 0.00 4.40
998 1569 1.400494 GCGTAAAACTAGGTGGCATGG 59.600 52.381 0.00 0.00 0.00 3.66
999 1570 2.095853 CAGCGTAAAACTAGGTGGCATG 59.904 50.000 0.00 0.00 0.00 4.06
1015 1586 1.205655 AGTCATGAGTATGTGCAGCGT 59.794 47.619 0.00 0.00 35.73 5.07
1046 1618 2.033065 GCTGCAATGATTGAGCTACGAG 60.033 50.000 9.76 0.00 33.76 4.18
1049 1621 3.376234 TCTTGCTGCAATGATTGAGCTAC 59.624 43.478 16.38 3.04 35.92 3.58
1141 1730 1.140134 TTCCTGGGTTCCTTGAGGGG 61.140 60.000 0.00 0.00 35.41 4.79
1223 1816 3.635836 TGATCATGCTCCACAGACTAGAG 59.364 47.826 0.00 0.00 0.00 2.43
1275 1893 0.527565 GGCCACTGCAAACATCGATT 59.472 50.000 0.00 0.00 40.13 3.34
2089 2802 2.693762 CGTCTTCGTCGCCCCTACA 61.694 63.158 0.00 0.00 0.00 2.74
2103 2816 2.651361 CCGCCAGTCTTGACGTCT 59.349 61.111 17.92 0.00 0.00 4.18
2207 2922 8.608844 AAACGAAGACTTGATTAAATCTCAGT 57.391 30.769 0.00 0.00 0.00 3.41
2210 2925 9.974750 CCTAAAACGAAGACTTGATTAAATCTC 57.025 33.333 0.00 0.00 0.00 2.75
2211 2926 9.720769 TCCTAAAACGAAGACTTGATTAAATCT 57.279 29.630 0.00 0.00 0.00 2.40
2219 2934 9.496873 TGATTAAATCCTAAAACGAAGACTTGA 57.503 29.630 0.00 0.00 0.00 3.02
2222 2937 9.503399 ACTTGATTAAATCCTAAAACGAAGACT 57.497 29.630 0.00 0.00 0.00 3.24
2223 2938 9.756461 GACTTGATTAAATCCTAAAACGAAGAC 57.244 33.333 0.00 0.00 0.00 3.01
2224 2939 9.720769 AGACTTGATTAAATCCTAAAACGAAGA 57.279 29.630 0.00 0.00 0.00 2.87
2227 2942 8.726988 CCAAGACTTGATTAAATCCTAAAACGA 58.273 33.333 16.99 0.00 0.00 3.85
2228 2943 8.512138 ACCAAGACTTGATTAAATCCTAAAACG 58.488 33.333 16.99 0.00 0.00 3.60
2229 2944 9.841880 GACCAAGACTTGATTAAATCCTAAAAC 57.158 33.333 16.99 0.00 0.00 2.43
2230 2945 9.581289 TGACCAAGACTTGATTAAATCCTAAAA 57.419 29.630 16.99 0.00 0.00 1.52
2231 2946 9.581289 TTGACCAAGACTTGATTAAATCCTAAA 57.419 29.630 16.99 0.00 0.00 1.85
2232 2947 9.231297 CTTGACCAAGACTTGATTAAATCCTAA 57.769 33.333 16.99 0.00 40.79 2.69
2233 2948 8.602424 TCTTGACCAAGACTTGATTAAATCCTA 58.398 33.333 16.99 0.00 42.06 2.94
2234 2949 7.461749 TCTTGACCAAGACTTGATTAAATCCT 58.538 34.615 16.99 0.00 42.06 3.24
2235 2950 7.607991 TCTCTTGACCAAGACTTGATTAAATCC 59.392 37.037 16.99 0.00 42.06 3.01
2236 2951 8.447053 GTCTCTTGACCAAGACTTGATTAAATC 58.553 37.037 16.99 5.03 42.06 2.17
2237 2952 7.118390 CGTCTCTTGACCAAGACTTGATTAAAT 59.882 37.037 16.99 0.00 42.06 1.40
2238 2953 6.423905 CGTCTCTTGACCAAGACTTGATTAAA 59.576 38.462 16.99 4.90 42.06 1.52
2239 2954 5.926542 CGTCTCTTGACCAAGACTTGATTAA 59.073 40.000 16.99 1.39 42.06 1.40
2240 2955 5.010719 ACGTCTCTTGACCAAGACTTGATTA 59.989 40.000 16.99 0.00 42.06 1.75
2241 2956 4.202264 ACGTCTCTTGACCAAGACTTGATT 60.202 41.667 16.99 2.88 42.06 2.57
2242 2957 3.322254 ACGTCTCTTGACCAAGACTTGAT 59.678 43.478 16.99 0.00 42.06 2.57
2243 2958 2.693591 ACGTCTCTTGACCAAGACTTGA 59.306 45.455 16.99 2.86 42.06 3.02
2244 2959 3.099267 ACGTCTCTTGACCAAGACTTG 57.901 47.619 8.31 8.31 42.06 3.16
2245 2960 4.098960 TGTTACGTCTCTTGACCAAGACTT 59.901 41.667 8.27 0.00 42.06 3.01
2246 2961 3.635373 TGTTACGTCTCTTGACCAAGACT 59.365 43.478 8.27 0.00 42.06 3.24
2247 2962 3.973657 TGTTACGTCTCTTGACCAAGAC 58.026 45.455 8.27 0.78 42.06 3.01
2259 2974 5.339008 TTCCTCTATTGCATGTTACGTCT 57.661 39.130 0.00 0.00 0.00 4.18
2297 3012 2.459060 TACCGAGATCCGTGCAAAAA 57.541 45.000 0.00 0.00 36.31 1.94
2299 3014 3.382227 TCTTATACCGAGATCCGTGCAAA 59.618 43.478 0.00 0.00 36.31 3.68
2303 3018 4.695928 TGAGATCTTATACCGAGATCCGTG 59.304 45.833 9.76 0.00 46.88 4.94
2342 3057 8.165428 GTCGACTCAAACTTCATTAAATCTCAG 58.835 37.037 8.70 0.00 0.00 3.35
2348 3063 5.468746 CCCAGTCGACTCAAACTTCATTAAA 59.531 40.000 16.96 0.00 0.00 1.52
2353 3068 2.036387 TCCCAGTCGACTCAAACTTCA 58.964 47.619 16.96 0.00 0.00 3.02
2386 3101 6.373216 TGGAAACGGAGGTGATATAAACAAAG 59.627 38.462 0.00 0.00 0.00 2.77
2399 3114 4.721132 TCAACTATTTTGGAAACGGAGGT 58.279 39.130 0.00 0.00 0.00 3.85
2497 3494 2.276123 CGTTGAAACGCACGTGCAC 61.276 57.895 37.03 25.29 46.06 4.57
2600 3598 9.492730 ACCCAAGGAATATATTTTGAGTGAAAT 57.507 29.630 10.27 0.00 33.95 2.17
2613 3611 9.586732 CCTCATCAAAATAACCCAAGGAATATA 57.413 33.333 0.00 0.00 0.00 0.86
2615 3613 7.418378 ACCTCATCAAAATAACCCAAGGAATA 58.582 34.615 0.00 0.00 0.00 1.75
2617 3615 5.650283 ACCTCATCAAAATAACCCAAGGAA 58.350 37.500 0.00 0.00 0.00 3.36
2620 3618 8.796475 CCATATACCTCATCAAAATAACCCAAG 58.204 37.037 0.00 0.00 0.00 3.61
2628 3626 8.608185 AAACCAACCATATACCTCATCAAAAT 57.392 30.769 0.00 0.00 0.00 1.82
2697 3696 3.326297 CCCACTTCTTTGCCCCAATTTAA 59.674 43.478 0.00 0.00 0.00 1.52
2705 3704 3.365472 ACAATATCCCACTTCTTTGCCC 58.635 45.455 0.00 0.00 0.00 5.36
2706 3705 4.747810 CAACAATATCCCACTTCTTTGCC 58.252 43.478 0.00 0.00 0.00 4.52
2710 3709 6.418057 TTTTGCAACAATATCCCACTTCTT 57.582 33.333 0.00 0.00 0.00 2.52
2715 3714 4.094739 GGCATTTTTGCAACAATATCCCAC 59.905 41.667 10.36 0.00 36.33 4.61
2737 3736 2.159043 ACGACTATGAGGCAAGTCATGG 60.159 50.000 5.87 5.52 41.83 3.66
2741 3740 4.634184 TCTAACGACTATGAGGCAAGTC 57.366 45.455 0.00 0.00 39.00 3.01
2752 3751 7.225011 ACCATCAGATCTACATCTAACGACTA 58.775 38.462 0.00 0.00 37.25 2.59
2791 3790 0.391528 TGATGATGGTGTGTCTGCCG 60.392 55.000 0.00 0.00 0.00 5.69
2793 3792 1.089920 GGTGATGATGGTGTGTCTGC 58.910 55.000 0.00 0.00 0.00 4.26
3051 4196 4.935205 CCTGCCATTTTAAAGGGTTTAAGC 59.065 41.667 10.15 0.00 36.56 3.09
3060 4205 4.222588 TCCACATTCCCTGCCATTTTAAAG 59.777 41.667 0.00 0.00 0.00 1.85
3108 4254 9.586435 CACTTCCTAACAAAAGAAAATCAACTT 57.414 29.630 0.00 0.00 0.00 2.66
3358 4506 2.601314 CTCGCGTAAAATCGAATGGTGA 59.399 45.455 5.77 0.00 34.07 4.02
3413 4562 8.844244 TCTAACTCCTACAATACTCGATTAACC 58.156 37.037 0.00 0.00 0.00 2.85
3669 4996 7.252612 TGTTATATGACCAGACAGAAAGGAA 57.747 36.000 0.00 0.00 0.00 3.36
3673 5000 7.148255 GCACAATGTTATATGACCAGACAGAAA 60.148 37.037 0.00 0.00 0.00 2.52
3676 5003 5.819379 AGCACAATGTTATATGACCAGACAG 59.181 40.000 0.00 0.00 0.00 3.51
3785 5127 7.264036 TCAGTATGGTCCTGTGCTAAAAGCA 62.264 44.000 0.00 0.00 43.33 3.91
3786 5128 3.375299 CAGTATGGTCCTGTGCTAAAAGC 59.625 47.826 0.00 0.00 42.82 3.51
3817 5163 7.563270 CGATGGAAAAACGAAAATGAAAACAT 58.437 30.769 0.00 0.00 0.00 2.71
3831 5208 5.116983 CACAAGTATGTTGCGATGGAAAAAC 59.883 40.000 0.00 0.00 37.82 2.43
3848 5225 2.876879 GCGCGCACACACACAAGTA 61.877 57.895 29.10 0.00 0.00 2.24
3861 5846 2.127003 GTACAAAGTTGGGCGCGC 60.127 61.111 25.94 25.94 0.00 6.86
3862 5847 2.255172 TGGTACAAAGTTGGGCGCG 61.255 57.895 0.00 0.00 31.92 6.86
3863 5848 3.752704 TGGTACAAAGTTGGGCGC 58.247 55.556 0.00 0.00 31.92 6.53
3975 5970 4.677584 TGCACAATTACCTGTTTGTTGTC 58.322 39.130 0.00 0.00 33.93 3.18
3986 5982 1.268352 TCACCGCTTTGCACAATTACC 59.732 47.619 0.00 0.00 0.00 2.85
4170 6294 9.961265 CATGTGCAATTCAAACTAGAATATCAT 57.039 29.630 0.00 0.00 37.24 2.45
4172 6296 8.278482 GCATGTGCAATTCAAACTAGAATATC 57.722 34.615 0.00 0.00 37.24 1.63
4259 6703 3.311091 ACCCAACAGTGACCAAGTACTA 58.689 45.455 0.00 0.00 0.00 1.82
4307 6751 2.380064 AAGTTGCCATGGACAGGAAA 57.620 45.000 18.40 0.00 0.00 3.13
4455 7258 0.901827 AGTCTCCACACACACACACA 59.098 50.000 0.00 0.00 0.00 3.72
4456 7259 1.134818 TCAGTCTCCACACACACACAC 60.135 52.381 0.00 0.00 0.00 3.82
4457 7260 1.190643 TCAGTCTCCACACACACACA 58.809 50.000 0.00 0.00 0.00 3.72
4458 7261 2.205074 CTTCAGTCTCCACACACACAC 58.795 52.381 0.00 0.00 0.00 3.82
4459 7262 1.138859 CCTTCAGTCTCCACACACACA 59.861 52.381 0.00 0.00 0.00 3.72
4460 7263 1.412710 TCCTTCAGTCTCCACACACAC 59.587 52.381 0.00 0.00 0.00 3.82
4461 7264 1.788229 TCCTTCAGTCTCCACACACA 58.212 50.000 0.00 0.00 0.00 3.72
4462 7265 2.910688 TTCCTTCAGTCTCCACACAC 57.089 50.000 0.00 0.00 0.00 3.82
4463 7266 3.924114 TTTTCCTTCAGTCTCCACACA 57.076 42.857 0.00 0.00 0.00 3.72
4464 7267 6.127897 CCAATATTTTCCTTCAGTCTCCACAC 60.128 42.308 0.00 0.00 0.00 3.82
4465 7268 5.945784 CCAATATTTTCCTTCAGTCTCCACA 59.054 40.000 0.00 0.00 0.00 4.17
4466 7269 5.163612 GCCAATATTTTCCTTCAGTCTCCAC 60.164 44.000 0.00 0.00 0.00 4.02
4467 7270 4.949856 GCCAATATTTTCCTTCAGTCTCCA 59.050 41.667 0.00 0.00 0.00 3.86
4468 7271 5.196695 AGCCAATATTTTCCTTCAGTCTCC 58.803 41.667 0.00 0.00 0.00 3.71
4469 7272 6.765915 AAGCCAATATTTTCCTTCAGTCTC 57.234 37.500 0.00 0.00 0.00 3.36
4470 7273 7.669722 TGTAAAGCCAATATTTTCCTTCAGTCT 59.330 33.333 0.00 0.00 0.00 3.24
4535 7435 5.927819 ACCATTTCAATGTGTTCACCAATT 58.072 33.333 0.37 0.00 34.60 2.32
4601 7572 8.380743 TGTACACTGTTATAAACCGACAAAAT 57.619 30.769 0.00 0.00 0.00 1.82
4622 7593 6.560253 AACTCAACTCAACCATTGATGTAC 57.440 37.500 0.00 0.00 39.30 2.90
4810 8170 2.431954 TACTACTCTCTCCGTTGGGG 57.568 55.000 0.00 0.00 37.02 4.96
4817 9067 4.602107 AGTTGACCCTTACTACTCTCTCC 58.398 47.826 0.00 0.00 0.00 3.71
4851 9102 7.575414 TTTTCCAACATGCAAACTAGTCTAA 57.425 32.000 0.00 0.00 0.00 2.10
4965 9809 2.614013 TCAGGCCTTTCCTCCCCC 60.614 66.667 0.00 0.00 45.52 5.40
4966 9810 2.684499 CCTCAGGCCTTTCCTCCCC 61.684 68.421 0.00 0.00 45.52 4.81
4967 9811 1.916206 GACCTCAGGCCTTTCCTCCC 61.916 65.000 0.00 0.00 45.52 4.30
4996 9840 2.550606 TGTTTGTAAGGACATGCGGAAC 59.449 45.455 0.00 0.00 34.86 3.62
4999 9843 1.876799 TGTGTTTGTAAGGACATGCGG 59.123 47.619 0.00 0.00 34.86 5.69
5049 10026 0.319641 GTCTTCGACACCCCACAGAC 60.320 60.000 0.00 0.00 32.09 3.51
5052 10029 0.105964 CAAGTCTTCGACACCCCACA 59.894 55.000 0.00 0.00 34.60 4.17
5053 10030 0.106149 ACAAGTCTTCGACACCCCAC 59.894 55.000 0.00 0.00 34.60 4.61
5054 10031 0.834612 AACAAGTCTTCGACACCCCA 59.165 50.000 0.00 0.00 34.60 4.96
5113 10091 2.031870 CGGAGGACCAGATGTGACATA 58.968 52.381 0.00 0.00 35.59 2.29
5336 10498 7.911651 TCCACCCATCTTAATATGATTCTCTC 58.088 38.462 2.54 0.00 0.00 3.20
5394 10563 4.820897 TCAGGCAGTAGTGATGTTTACAG 58.179 43.478 0.42 0.00 0.00 2.74
5431 10903 1.926510 TGCATGTCATTGTCGTCGATC 59.073 47.619 0.00 0.00 0.00 3.69
6008 13133 2.237751 CGGGAAATACAGCGCCTCG 61.238 63.158 2.29 0.00 0.00 4.63
6018 13143 2.124901 CACCTGCGCCGGGAAATA 60.125 61.111 22.53 0.00 33.36 1.40
6095 13220 3.032609 CCGAGCGCCACGATCATC 61.033 66.667 22.56 2.72 42.67 2.92
6242 13367 0.533491 TGGCGCACGTAAGGAAGTAT 59.467 50.000 10.83 0.00 46.39 2.12
6297 13425 3.357079 GTGTTGCGTCCTGGGCTG 61.357 66.667 0.00 0.00 0.00 4.85
6301 13429 2.310233 CGAGTGTGTTGCGTCCTGG 61.310 63.158 0.00 0.00 0.00 4.45
6336 13485 3.314541 AACTGATAGTTCGTCACACCC 57.685 47.619 0.00 0.00 31.77 4.61
6349 13498 4.038042 CGTATCTCTCCTGCCAAACTGATA 59.962 45.833 0.00 0.00 0.00 2.15
6363 13512 1.532007 CAGGAGCCGTACGTATCTCTC 59.468 57.143 15.21 11.33 0.00 3.20
6384 13533 3.118629 TCAAGGAATCTGTCTTGGATCGG 60.119 47.826 0.00 0.00 40.35 4.18
6393 13542 2.289444 TGAACGGGTCAAGGAATCTGTC 60.289 50.000 0.00 0.00 31.51 3.51
6403 13552 3.190874 GCAAACATTTTGAACGGGTCAA 58.809 40.909 3.93 3.93 44.74 3.18
6418 13567 5.878332 AGTATCAACATGAATCGCAAACA 57.122 34.783 0.00 0.00 0.00 2.83
6462 13612 4.367450 ACACAAATTATGCAGCAAAACGT 58.633 34.783 0.00 0.00 0.00 3.99
6498 13648 9.819267 TCACCCGTCAAACTAATTTTTATTTTT 57.181 25.926 0.00 0.00 0.00 1.94
6499 13649 9.471084 CTCACCCGTCAAACTAATTTTTATTTT 57.529 29.630 0.00 0.00 0.00 1.82
6500 13650 8.852135 TCTCACCCGTCAAACTAATTTTTATTT 58.148 29.630 0.00 0.00 0.00 1.40
6501 13651 8.398878 TCTCACCCGTCAAACTAATTTTTATT 57.601 30.769 0.00 0.00 0.00 1.40
6502 13652 7.989416 TCTCACCCGTCAAACTAATTTTTAT 57.011 32.000 0.00 0.00 0.00 1.40
6503 13653 7.804843 TTCTCACCCGTCAAACTAATTTTTA 57.195 32.000 0.00 0.00 0.00 1.52
6504 13654 6.702716 TTCTCACCCGTCAAACTAATTTTT 57.297 33.333 0.00 0.00 0.00 1.94
6505 13655 6.544564 TCTTTCTCACCCGTCAAACTAATTTT 59.455 34.615 0.00 0.00 0.00 1.82
6506 13656 6.059484 TCTTTCTCACCCGTCAAACTAATTT 58.941 36.000 0.00 0.00 0.00 1.82
6507 13657 5.617252 TCTTTCTCACCCGTCAAACTAATT 58.383 37.500 0.00 0.00 0.00 1.40
6508 13658 5.223449 TCTTTCTCACCCGTCAAACTAAT 57.777 39.130 0.00 0.00 0.00 1.73
6509 13659 4.675976 TCTTTCTCACCCGTCAAACTAA 57.324 40.909 0.00 0.00 0.00 2.24
6510 13660 4.282449 TCATCTTTCTCACCCGTCAAACTA 59.718 41.667 0.00 0.00 0.00 2.24
6511 13661 3.071023 TCATCTTTCTCACCCGTCAAACT 59.929 43.478 0.00 0.00 0.00 2.66
6512 13662 3.399330 TCATCTTTCTCACCCGTCAAAC 58.601 45.455 0.00 0.00 0.00 2.93
6513 13663 3.762407 TCATCTTTCTCACCCGTCAAA 57.238 42.857 0.00 0.00 0.00 2.69
6514 13664 3.981071 ATCATCTTTCTCACCCGTCAA 57.019 42.857 0.00 0.00 0.00 3.18
6515 13665 5.414789 TTTATCATCTTTCTCACCCGTCA 57.585 39.130 0.00 0.00 0.00 4.35
6516 13666 6.316390 ACAATTTATCATCTTTCTCACCCGTC 59.684 38.462 0.00 0.00 0.00 4.79
6517 13667 6.094048 CACAATTTATCATCTTTCTCACCCGT 59.906 38.462 0.00 0.00 0.00 5.28
6518 13668 6.316140 TCACAATTTATCATCTTTCTCACCCG 59.684 38.462 0.00 0.00 0.00 5.28
6519 13669 7.630242 TCACAATTTATCATCTTTCTCACCC 57.370 36.000 0.00 0.00 0.00 4.61
6528 13678 8.834465 CCGAAGAGAAATCACAATTTATCATCT 58.166 33.333 7.89 0.00 42.79 2.90
6529 13679 8.830580 TCCGAAGAGAAATCACAATTTATCATC 58.169 33.333 7.89 5.04 42.79 2.92
6530 13680 8.737168 TCCGAAGAGAAATCACAATTTATCAT 57.263 30.769 7.89 0.00 42.79 2.45
6531 13681 8.560355 TTCCGAAGAGAAATCACAATTTATCA 57.440 30.769 7.89 0.00 42.79 2.15
6532 13682 9.840427 TTTTCCGAAGAGAAATCACAATTTATC 57.160 29.630 0.00 0.00 41.38 1.75
6534 13684 9.677567 CTTTTTCCGAAGAGAAATCACAATTTA 57.322 29.630 0.00 0.00 35.21 1.40
6535 13685 7.169813 GCTTTTTCCGAAGAGAAATCACAATTT 59.830 33.333 0.00 0.00 37.80 1.82
6536 13686 6.642540 GCTTTTTCCGAAGAGAAATCACAATT 59.357 34.615 0.00 0.00 35.74 2.32
6537 13687 6.015940 AGCTTTTTCCGAAGAGAAATCACAAT 60.016 34.615 0.00 0.00 35.74 2.71
6538 13688 5.299279 AGCTTTTTCCGAAGAGAAATCACAA 59.701 36.000 0.00 0.00 35.74 3.33
6539 13689 4.821805 AGCTTTTTCCGAAGAGAAATCACA 59.178 37.500 0.00 0.00 35.74 3.58
6540 13690 5.363979 AGCTTTTTCCGAAGAGAAATCAC 57.636 39.130 0.00 0.00 35.74 3.06
6541 13691 6.072673 GGTAAGCTTTTTCCGAAGAGAAATCA 60.073 38.462 3.20 0.00 35.74 2.57
6542 13692 6.149640 AGGTAAGCTTTTTCCGAAGAGAAATC 59.850 38.462 3.20 0.00 35.74 2.17
6543 13693 6.004574 AGGTAAGCTTTTTCCGAAGAGAAAT 58.995 36.000 3.20 0.00 35.74 2.17
6544 13694 5.374071 AGGTAAGCTTTTTCCGAAGAGAAA 58.626 37.500 3.20 0.00 33.98 2.52
6545 13695 4.969484 AGGTAAGCTTTTTCCGAAGAGAA 58.031 39.130 3.20 0.00 0.00 2.87
6546 13696 4.618920 AGGTAAGCTTTTTCCGAAGAGA 57.381 40.909 3.20 0.00 0.00 3.10
6547 13697 4.998033 AGAAGGTAAGCTTTTTCCGAAGAG 59.002 41.667 3.20 0.00 0.00 2.85
6548 13698 4.969484 AGAAGGTAAGCTTTTTCCGAAGA 58.031 39.130 3.20 0.00 0.00 2.87
6549 13699 5.121925 GGTAGAAGGTAAGCTTTTTCCGAAG 59.878 44.000 3.20 0.00 0.00 3.79
6550 13700 4.999311 GGTAGAAGGTAAGCTTTTTCCGAA 59.001 41.667 3.20 0.00 0.00 4.30
6551 13701 4.572909 GGTAGAAGGTAAGCTTTTTCCGA 58.427 43.478 3.20 0.00 0.00 4.55
6552 13702 3.370061 CGGTAGAAGGTAAGCTTTTTCCG 59.630 47.826 3.20 5.85 0.00 4.30
6605 13755 2.380084 ACACACGATCAAACGGCTAT 57.620 45.000 0.00 0.00 37.61 2.97
6665 13823 1.940613 GAGTTGCAGGAAAACAGACGT 59.059 47.619 0.00 0.00 0.00 4.34
6738 13898 4.148825 CTTCCAGACGAGCCCCGG 62.149 72.222 0.00 0.00 43.93 5.73
6827 13987 0.959553 TTCAGACGAGCCTCGAAACT 59.040 50.000 22.80 13.44 43.74 2.66
6845 14005 2.585247 GCCGCTCGCCGACTAATT 60.585 61.111 0.00 0.00 40.02 1.40
6942 14102 2.125106 GCCGATCCCGAGCAAGTT 60.125 61.111 0.00 0.00 38.22 2.66
6990 14150 2.123342 CAGAAATCGCCGATCTCTGAC 58.877 52.381 22.70 1.63 36.44 3.51
7086 14249 6.072175 ACAAGACTTGTGTTGCAGAAACTTTA 60.072 34.615 19.96 0.00 43.48 1.85
7212 14383 1.136305 TGGCCTCGTATGCTCTAACAC 59.864 52.381 3.32 0.00 0.00 3.32
7222 14393 2.943033 GTTGCAATACTTGGCCTCGTAT 59.057 45.455 0.59 7.99 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.