Multiple sequence alignment - TraesCS7B01G020000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G020000 chr7B 100.000 4637 0 0 1 4637 17615822 17611186 0.000000e+00 8564.0
1 TraesCS7B01G020000 chr7B 96.809 94 0 2 4122 4212 240636191 240636098 2.230000e-33 154.0
2 TraesCS7B01G020000 chr7B 94.949 99 2 2 4117 4213 17517336 17517239 8.040000e-33 152.0
3 TraesCS7B01G020000 chr7B 95.789 95 2 2 4323 4417 17517877 17517785 8.040000e-33 152.0
4 TraesCS7B01G020000 chr7A 96.865 1212 35 3 2620 3828 78422194 78420983 0.000000e+00 2025.0
5 TraesCS7B01G020000 chr7A 90.313 1053 58 28 865 1890 78423836 78422801 0.000000e+00 1339.0
6 TraesCS7B01G020000 chr7A 93.592 515 19 9 1888 2399 78422721 78422218 0.000000e+00 756.0
7 TraesCS7B01G020000 chr7A 79.742 775 118 15 46 790 78424650 78423885 4.110000e-145 525.0
8 TraesCS7B01G020000 chr7A 82.148 661 57 23 3982 4637 78420560 78419956 1.150000e-140 510.0
9 TraesCS7B01G020000 chr7A 93.846 195 8 4 2447 2639 211714989 211715181 1.630000e-74 291.0
10 TraesCS7B01G020000 chr7A 85.906 149 17 4 4120 4266 78415936 78415790 6.210000e-34 156.0
11 TraesCS7B01G020000 chr7A 92.661 109 4 3 4312 4417 49354199 49354092 2.230000e-33 154.0
12 TraesCS7B01G020000 chr7A 96.809 94 0 3 4122 4212 285696836 285696929 2.230000e-33 154.0
13 TraesCS7B01G020000 chr7A 93.421 76 1 3 3911 3982 78420677 78420602 4.910000e-20 110.0
14 TraesCS7B01G020000 chr7D 96.691 1118 34 3 2727 3842 74402640 74401524 0.000000e+00 1857.0
15 TraesCS7B01G020000 chr7D 95.522 737 21 2 1709 2445 74403559 74402835 0.000000e+00 1168.0
16 TraesCS7B01G020000 chr7D 94.745 609 21 4 876 1480 74404360 74403759 0.000000e+00 937.0
17 TraesCS7B01G020000 chr7D 82.706 717 69 19 46 737 74405116 74404430 1.860000e-163 586.0
18 TraesCS7B01G020000 chr7D 91.288 264 21 2 3982 4245 74400842 74400581 4.410000e-95 359.0
19 TraesCS7B01G020000 chr7D 87.580 314 31 6 4326 4635 74400558 74400249 1.590000e-94 357.0
20 TraesCS7B01G020000 chr7D 96.135 207 4 3 2617 2819 74402846 74402640 7.430000e-88 335.0
21 TraesCS7B01G020000 chr7D 95.455 110 3 2 4105 4213 74395391 74395283 1.720000e-39 174.0
22 TraesCS7B01G020000 chr7D 87.671 146 14 3 4122 4266 74399241 74399099 2.870000e-37 167.0
23 TraesCS7B01G020000 chr7D 90.164 122 7 3 1459 1579 74403749 74403632 2.230000e-33 154.0
24 TraesCS7B01G020000 chr7D 90.000 110 9 2 4098 4206 76728538 76728646 1.740000e-29 141.0
25 TraesCS7B01G020000 chr7D 94.286 70 4 0 1599 1668 74403635 74403566 1.760000e-19 108.0
26 TraesCS7B01G020000 chr7D 92.105 76 3 3 3910 3982 74400956 74400881 2.280000e-18 104.0
27 TraesCS7B01G020000 chr7D 85.149 101 13 2 2349 2448 448262846 448262945 8.210000e-18 102.0
28 TraesCS7B01G020000 chr7D 92.157 51 1 3 766 814 74404434 74404385 8.330000e-08 69.4
29 TraesCS7B01G020000 chr7D 93.182 44 3 0 3861 3904 74401065 74401022 1.080000e-06 65.8
30 TraesCS7B01G020000 chr2B 87.349 332 33 8 989 1312 407225456 407225126 5.670000e-99 372.0
31 TraesCS7B01G020000 chr2B 89.017 173 18 1 2617 2788 42881476 42881304 3.630000e-51 213.0
32 TraesCS7B01G020000 chr2B 88.439 173 19 1 2617 2788 42711480 42711308 1.690000e-49 207.0
33 TraesCS7B01G020000 chr2B 88.439 173 19 1 2617 2788 42778345 42778173 1.690000e-49 207.0
34 TraesCS7B01G020000 chr5B 100.000 170 0 0 2447 2616 163080739 163080570 9.690000e-82 315.0
35 TraesCS7B01G020000 chr5B 99.412 170 1 0 2448 2617 70400319 70400488 4.510000e-80 309.0
36 TraesCS7B01G020000 chr5B 99.412 170 1 0 2447 2616 573807738 573807569 4.510000e-80 309.0
37 TraesCS7B01G020000 chr5B 99.412 170 1 0 2447 2616 654755911 654755742 4.510000e-80 309.0
38 TraesCS7B01G020000 chr2A 99.422 173 1 0 2447 2619 639065958 639066130 9.690000e-82 315.0
39 TraesCS7B01G020000 chr2A 89.773 88 7 2 2361 2448 515945056 515945141 1.360000e-20 111.0
40 TraesCS7B01G020000 chr3B 99.419 172 1 0 2447 2618 556051778 556051949 3.480000e-81 313.0
41 TraesCS7B01G020000 chr1A 99.412 170 1 0 2447 2616 543931053 543930884 4.510000e-80 309.0
42 TraesCS7B01G020000 chr1A 98.837 86 1 0 4331 4416 477696941 477696856 2.230000e-33 154.0
43 TraesCS7B01G020000 chr1A 95.652 92 2 1 4330 4421 552966837 552966748 3.740000e-31 147.0
44 TraesCS7B01G020000 chr1A 94.737 95 2 3 4329 4421 552966526 552966433 1.340000e-30 145.0
45 TraesCS7B01G020000 chr4B 98.286 175 3 0 2447 2621 166703756 166703582 1.620000e-79 307.0
46 TraesCS7B01G020000 chr4B 98.824 85 0 1 4333 4417 596374772 596374855 2.890000e-32 150.0
47 TraesCS7B01G020000 chr1D 83.486 327 41 6 989 1309 480672744 480673063 4.540000e-75 292.0
48 TraesCS7B01G020000 chr1D 98.824 85 1 0 4332 4416 423916630 423916714 8.040000e-33 152.0
49 TraesCS7B01G020000 chr1D 88.636 88 9 1 2361 2448 441551663 441551749 6.350000e-19 106.0
50 TraesCS7B01G020000 chr1D 87.097 93 11 1 2356 2448 302252832 302252741 2.280000e-18 104.0
51 TraesCS7B01G020000 chr1D 96.875 32 1 0 3846 3877 64431306 64431337 2.000000e-03 54.7
52 TraesCS7B01G020000 chr2D 90.751 173 15 1 2617 2788 527683311 527683483 3.610000e-56 230.0
53 TraesCS7B01G020000 chr3D 89.595 173 17 1 2617 2788 308276798 308276970 7.810000e-53 219.0
54 TraesCS7B01G020000 chrUn 89.017 173 18 1 2617 2788 391856983 391857155 3.630000e-51 213.0
55 TraesCS7B01G020000 chrUn 88.636 88 9 1 2361 2448 10180655 10180741 6.350000e-19 106.0
56 TraesCS7B01G020000 chr3A 88.439 173 19 1 2617 2788 577019322 577019494 1.690000e-49 207.0
57 TraesCS7B01G020000 chr6D 89.362 94 9 1 2355 2448 285775100 285775192 2.930000e-22 117.0
58 TraesCS7B01G020000 chr1B 89.773 88 8 1 2361 2448 402943864 402943950 1.360000e-20 111.0
59 TraesCS7B01G020000 chr4D 88.636 88 9 1 2361 2448 228107078 228107164 6.350000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G020000 chr7B 17611186 17615822 4636 True 8564.000000 8564 100.000000 1 4637 1 chr7B.!!$R1 4636
1 TraesCS7B01G020000 chr7A 78419956 78424650 4694 True 877.500000 2025 89.346833 46 4637 6 chr7A.!!$R3 4591
2 TraesCS7B01G020000 chr7D 74395283 74405116 9833 True 460.085714 1857 92.120500 46 4635 14 chr7D.!!$R1 4589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 500 0.032515 TTCAGGACGATGGGGCTAGA 60.033 55.0 0.00 0.00 0.00 2.43 F
739 784 0.166814 GGAGTGTCATGCAAAGACGC 59.833 55.0 21.72 21.72 44.60 5.19 F
2473 2689 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.80 4.35 F
2497 2713 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.0 0.00 0.00 0.00 2.69 F
2506 2722 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.0 0.00 0.00 35.79 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 2683 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.0 44.78 4.85 R
2487 2703 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.0 0.00 0.0 0.00 4.94 R
3399 3710 0.179111 CGGCGCTCTTGTATCTTCCA 60.179 55.0 7.64 0.0 0.00 3.53 R
3544 3855 0.322322 TCGCCGTAAACCACATCCTT 59.678 50.0 0.00 0.0 0.00 3.36 R
4499 5530 0.378962 CTCGTTTGCGGTTTTGTCCA 59.621 50.0 0.00 0.0 38.89 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.362120 CTCAAAGGCTGCCTGGGG 60.362 66.667 24.16 14.12 32.13 4.96
27 28 4.579127 GCCTGGGGCGTTGATTAT 57.421 55.556 0.00 0.00 39.62 1.28
28 29 2.807247 GCCTGGGGCGTTGATTATT 58.193 52.632 0.00 0.00 39.62 1.40
29 30 0.668535 GCCTGGGGCGTTGATTATTC 59.331 55.000 0.00 0.00 39.62 1.75
30 31 1.318576 CCTGGGGCGTTGATTATTCC 58.681 55.000 0.00 0.00 0.00 3.01
31 32 1.133792 CCTGGGGCGTTGATTATTCCT 60.134 52.381 0.00 0.00 0.00 3.36
32 33 1.949525 CTGGGGCGTTGATTATTCCTG 59.050 52.381 0.00 0.00 0.00 3.86
33 34 0.668535 GGGGCGTTGATTATTCCTGC 59.331 55.000 0.00 0.00 0.00 4.85
34 35 0.668535 GGGCGTTGATTATTCCTGCC 59.331 55.000 0.00 0.00 40.25 4.85
35 36 0.307760 GGCGTTGATTATTCCTGCCG 59.692 55.000 0.00 0.00 0.00 5.69
36 37 0.317020 GCGTTGATTATTCCTGCCGC 60.317 55.000 0.00 0.00 0.00 6.53
37 38 0.307760 CGTTGATTATTCCTGCCGCC 59.692 55.000 0.00 0.00 0.00 6.13
38 39 0.307760 GTTGATTATTCCTGCCGCCG 59.692 55.000 0.00 0.00 0.00 6.46
39 40 1.444119 TTGATTATTCCTGCCGCCGC 61.444 55.000 0.00 0.00 0.00 6.53
40 41 1.598130 GATTATTCCTGCCGCCGCT 60.598 57.895 0.00 0.00 35.36 5.52
41 42 0.320421 GATTATTCCTGCCGCCGCTA 60.320 55.000 0.00 0.00 35.36 4.26
42 43 0.602905 ATTATTCCTGCCGCCGCTAC 60.603 55.000 0.00 0.00 35.36 3.58
43 44 1.682451 TTATTCCTGCCGCCGCTACT 61.682 55.000 0.00 0.00 35.36 2.57
44 45 0.824595 TATTCCTGCCGCCGCTACTA 60.825 55.000 0.00 0.00 35.36 1.82
60 61 8.718734 CGCCGCTACTATCTATATATGATACAA 58.281 37.037 0.00 0.00 0.00 2.41
131 132 7.729116 ACTCATGTGGAATCAAACAATTTCTT 58.271 30.769 0.00 0.00 0.00 2.52
144 155 6.641169 AACAATTTCTTTCTCCTCACCTTC 57.359 37.500 0.00 0.00 0.00 3.46
177 188 0.326264 AGAGGCAATCAAGGCGAGTT 59.674 50.000 0.00 0.00 39.37 3.01
198 222 0.033920 TCATTCCTCGCCATCCATCG 59.966 55.000 0.00 0.00 0.00 3.84
204 228 0.032540 CTCGCCATCCATCGTCATCA 59.967 55.000 0.00 0.00 0.00 3.07
210 234 3.741075 GCCATCCATCGTCATCAGTGTTA 60.741 47.826 0.00 0.00 0.00 2.41
238 269 2.322658 TGGTTACTCCACCGACTTCTT 58.677 47.619 0.00 0.00 41.93 2.52
240 271 2.561858 GGTTACTCCACCGACTTCTTCT 59.438 50.000 0.00 0.00 35.97 2.85
242 273 1.705873 ACTCCACCGACTTCTTCTGT 58.294 50.000 0.00 0.00 0.00 3.41
245 276 2.533318 CACCGACTTCTTCTGTGGC 58.467 57.895 0.00 0.00 36.16 5.01
252 283 1.620819 ACTTCTTCTGTGGCTCGATGT 59.379 47.619 0.00 0.00 0.00 3.06
257 288 2.358615 TGTGGCTCGATGTGTGGC 60.359 61.111 0.00 0.00 37.18 5.01
264 295 3.061848 CGATGTGTGGCCAACCCC 61.062 66.667 7.24 0.00 33.59 4.95
266 297 1.532794 GATGTGTGGCCAACCCCAA 60.533 57.895 7.24 0.00 36.46 4.12
298 329 5.399858 CGTCGATCCATACATAGTTAAGGG 58.600 45.833 0.00 0.00 0.00 3.95
311 342 6.734281 ACATAGTTAAGGGTTAGGGTTTCTCT 59.266 38.462 0.00 0.00 0.00 3.10
315 346 2.986050 AGGGTTAGGGTTTCTCTGTGA 58.014 47.619 0.00 0.00 0.00 3.58
332 363 3.072944 TGTGACGCATCATTGATTGTGA 58.927 40.909 13.14 1.80 37.14 3.58
333 364 3.690628 TGTGACGCATCATTGATTGTGAT 59.309 39.130 13.14 0.00 37.14 3.06
358 389 2.371841 AGTGCCAGTCTGGTGAATACAA 59.628 45.455 20.24 0.00 40.46 2.41
360 391 4.225042 AGTGCCAGTCTGGTGAATACAATA 59.775 41.667 20.24 0.00 40.46 1.90
364 395 6.663093 TGCCAGTCTGGTGAATACAATATTTT 59.337 34.615 20.24 0.00 40.46 1.82
366 397 7.489113 GCCAGTCTGGTGAATACAATATTTTTG 59.511 37.037 20.24 0.00 40.46 2.44
383 414 8.877864 ATATTTTTGTCCAACTTGTCCATCTA 57.122 30.769 0.00 0.00 0.00 1.98
416 447 0.447406 TTTGCGGCATCAATGACTCG 59.553 50.000 2.28 0.00 32.20 4.18
418 449 2.463620 GCGGCATCAATGACTCGCA 61.464 57.895 17.20 0.00 40.30 5.10
435 466 1.806247 CGCAGGCATAAATCCTCGTCA 60.806 52.381 0.00 0.00 0.00 4.35
437 468 2.880890 GCAGGCATAAATCCTCGTCAAT 59.119 45.455 0.00 0.00 0.00 2.57
439 470 4.515191 GCAGGCATAAATCCTCGTCAATTA 59.485 41.667 0.00 0.00 0.00 1.40
469 500 0.032515 TTCAGGACGATGGGGCTAGA 60.033 55.000 0.00 0.00 0.00 2.43
477 508 2.167900 ACGATGGGGCTAGAGTTTACAC 59.832 50.000 0.00 0.00 0.00 2.90
483 514 2.493278 GGGCTAGAGTTTACACGGTACA 59.507 50.000 0.00 0.00 0.00 2.90
486 517 4.142315 GGCTAGAGTTTACACGGTACATCA 60.142 45.833 0.00 0.00 0.00 3.07
489 520 7.198390 GCTAGAGTTTACACGGTACATCAATA 58.802 38.462 0.00 0.00 0.00 1.90
491 522 6.927416 AGAGTTTACACGGTACATCAATACA 58.073 36.000 0.00 0.00 0.00 2.29
497 528 3.921630 CACGGTACATCAATACAACGACA 59.078 43.478 0.00 0.00 0.00 4.35
508 551 1.729284 ACAACGACACCGACAACTTT 58.271 45.000 0.00 0.00 39.50 2.66
528 571 3.093057 TCTCATGTAGTCTGGTGCTCT 57.907 47.619 0.00 0.00 0.00 4.09
553 597 1.067974 TCATCTTTGTCACGTCGGTGT 59.932 47.619 0.00 0.00 44.68 4.16
567 611 0.320683 CGGTGTGTTCTCTCATGCCA 60.321 55.000 0.00 0.00 0.00 4.92
575 619 1.341080 TCTCTCATGCCAGTGTGACA 58.659 50.000 0.00 0.00 0.00 3.58
619 664 4.249661 GCTCTCGGATTTTCAACTCTTCT 58.750 43.478 0.00 0.00 0.00 2.85
620 665 4.092675 GCTCTCGGATTTTCAACTCTTCTG 59.907 45.833 0.00 0.00 0.00 3.02
683 728 0.329596 GTGGCCCTTGATGACTTCCT 59.670 55.000 0.00 0.00 0.00 3.36
706 751 3.792401 TCTGTGATCAACAACGACAAGT 58.208 40.909 0.00 0.00 38.67 3.16
713 758 6.018994 GTGATCAACAACGACAAGTTTACTCT 60.019 38.462 0.00 0.00 42.02 3.24
738 783 1.511850 TGGAGTGTCATGCAAAGACG 58.488 50.000 15.28 0.00 38.83 4.18
739 784 0.166814 GGAGTGTCATGCAAAGACGC 59.833 55.000 21.72 21.72 44.60 5.19
756 801 2.666190 CGCCATCGCCCATACAGG 60.666 66.667 0.00 0.00 37.03 4.00
763 808 3.161450 GCCCATACAGGCGAGGGA 61.161 66.667 0.00 0.00 44.57 4.20
764 809 3.142393 CCCATACAGGCGAGGGAG 58.858 66.667 0.00 0.00 44.30 4.30
765 810 1.457643 CCCATACAGGCGAGGGAGA 60.458 63.158 0.00 0.00 44.30 3.71
768 813 1.209504 CCATACAGGCGAGGGAGAAAA 59.790 52.381 0.00 0.00 0.00 2.29
769 814 2.355716 CCATACAGGCGAGGGAGAAAAA 60.356 50.000 0.00 0.00 0.00 1.94
850 917 6.902341 GGTTGCTTACCATATGTATCACATG 58.098 40.000 1.24 0.00 46.92 3.21
851 918 6.072508 GGTTGCTTACCATATGTATCACATGG 60.073 42.308 5.63 5.63 46.92 3.66
890 965 4.537135 TTGTACTCCTGGTTTAGCAGAG 57.463 45.455 10.34 8.21 0.00 3.35
936 1020 1.605058 CTCCATTCGTGGGTCGGTCT 61.605 60.000 0.00 0.00 40.32 3.85
946 1043 1.079336 GGTCGGTCTTACCAGCACC 60.079 63.158 0.00 0.00 38.47 5.01
987 1084 2.897972 GGTGGGTAGTCGCCGAAT 59.102 61.111 0.00 0.00 0.00 3.34
1473 1570 2.062971 TCGTCCCAGGATACAGGTAC 57.937 55.000 0.00 0.00 42.93 3.34
1479 1606 2.695666 CCCAGGATACAGGTACAGACTG 59.304 54.545 0.00 0.00 42.93 3.51
1483 1610 2.101582 GGATACAGGTACAGACTGCAGG 59.898 54.545 19.93 2.38 39.55 4.85
1536 1663 3.867857 TGTGCACGCTCCATATCTTTTA 58.132 40.909 13.13 0.00 0.00 1.52
1537 1664 4.450976 TGTGCACGCTCCATATCTTTTAT 58.549 39.130 13.13 0.00 0.00 1.40
1538 1665 5.606505 TGTGCACGCTCCATATCTTTTATA 58.393 37.500 13.13 0.00 0.00 0.98
1539 1666 5.465390 TGTGCACGCTCCATATCTTTTATAC 59.535 40.000 13.13 0.00 0.00 1.47
1574 1701 3.196254 ACTGCTTTGGCCATTTTATGAGG 59.804 43.478 6.09 0.00 37.74 3.86
1630 1757 5.220815 GCTCAGATGCAGGATTGAGTAAAAG 60.221 44.000 16.14 0.00 39.33 2.27
1637 1765 5.185635 TGCAGGATTGAGTAAAAGAATTGGG 59.814 40.000 0.00 0.00 0.00 4.12
1700 1828 4.647611 TCAGGAAAAACTTTATCTCGCCA 58.352 39.130 0.00 0.00 0.00 5.69
1701 1829 5.253330 TCAGGAAAAACTTTATCTCGCCAT 58.747 37.500 0.00 0.00 0.00 4.40
1705 1836 6.094186 AGGAAAAACTTTATCTCGCCATTCTC 59.906 38.462 0.00 0.00 0.00 2.87
1707 1838 6.670077 AAAACTTTATCTCGCCATTCTCTC 57.330 37.500 0.00 0.00 0.00 3.20
1725 1856 2.094906 TCTCGGACCAGTATTTCACACG 60.095 50.000 0.00 0.00 0.00 4.49
1727 1858 0.719465 GGACCAGTATTTCACACGCG 59.281 55.000 3.53 3.53 0.00 6.01
1728 1859 1.670674 GGACCAGTATTTCACACGCGA 60.671 52.381 15.93 0.00 0.00 5.87
1794 1925 7.439157 TGACCATTTCAGTGTGATTTTCTAG 57.561 36.000 0.00 0.00 0.00 2.43
1818 1949 7.963532 AGTTGTCTACATAGGTTCTTTCAGAA 58.036 34.615 0.00 0.00 0.00 3.02
1858 1989 6.412362 AATTCAGCCAGATACTACTGTAGG 57.588 41.667 18.38 2.30 36.30 3.18
1919 2135 2.158608 AGCTACCTTGTATCATTGCCCC 60.159 50.000 0.00 0.00 0.00 5.80
2016 2232 3.058224 GGGACACTGTTGTGAAATACAGC 60.058 47.826 3.03 0.00 46.55 4.40
2139 2355 5.035443 CAGAACATCACCGTTAGCTACTAC 58.965 45.833 0.00 0.00 0.00 2.73
2232 2448 4.860802 AATACAAGATGATGTGGGTGGA 57.139 40.909 0.00 0.00 34.75 4.02
2235 2451 2.376518 ACAAGATGATGTGGGTGGACTT 59.623 45.455 0.00 0.00 30.82 3.01
2369 2585 6.484818 TTATTACTTAACGTCCTGTTTGGC 57.515 37.500 0.00 0.00 42.09 4.52
2374 2590 0.958822 AACGTCCTGTTTGGCAATCC 59.041 50.000 0.00 0.00 37.59 3.01
2443 2659 5.514500 TTAGGCAATGGGAAGTAGACTTT 57.486 39.130 0.00 0.00 36.11 2.66
2444 2660 4.388577 AGGCAATGGGAAGTAGACTTTT 57.611 40.909 0.00 0.00 36.11 2.27
2445 2661 5.514500 AGGCAATGGGAAGTAGACTTTTA 57.486 39.130 0.00 0.00 36.11 1.52
2446 2662 5.254115 AGGCAATGGGAAGTAGACTTTTAC 58.746 41.667 0.00 0.00 36.11 2.01
2447 2663 5.014228 AGGCAATGGGAAGTAGACTTTTACT 59.986 40.000 0.00 0.00 36.11 2.24
2448 2664 5.710567 GGCAATGGGAAGTAGACTTTTACTT 59.289 40.000 0.00 0.00 44.38 2.24
2449 2665 6.349363 GGCAATGGGAAGTAGACTTTTACTTG 60.349 42.308 3.38 1.60 42.38 3.16
2450 2666 6.349363 GCAATGGGAAGTAGACTTTTACTTGG 60.349 42.308 3.38 0.00 42.38 3.61
2451 2667 4.648651 TGGGAAGTAGACTTTTACTTGGC 58.351 43.478 3.38 0.00 42.38 4.52
2452 2668 3.683340 GGGAAGTAGACTTTTACTTGGCG 59.317 47.826 3.38 0.00 42.38 5.69
2453 2669 3.124806 GGAAGTAGACTTTTACTTGGCGC 59.875 47.826 0.00 0.00 42.38 6.53
2454 2670 3.396260 AGTAGACTTTTACTTGGCGCA 57.604 42.857 10.83 0.00 29.72 6.09
2455 2671 3.326747 AGTAGACTTTTACTTGGCGCAG 58.673 45.455 10.83 0.19 29.72 5.18
2456 2672 2.256117 AGACTTTTACTTGGCGCAGT 57.744 45.000 10.83 7.82 0.00 4.40
2457 2673 1.873591 AGACTTTTACTTGGCGCAGTG 59.126 47.619 10.83 0.00 0.00 3.66
2458 2674 0.951558 ACTTTTACTTGGCGCAGTGG 59.048 50.000 10.83 0.00 0.00 4.00
2459 2675 0.951558 CTTTTACTTGGCGCAGTGGT 59.048 50.000 10.83 4.69 0.00 4.16
2460 2676 2.147958 CTTTTACTTGGCGCAGTGGTA 58.852 47.619 10.83 3.62 0.00 3.25
2461 2677 2.257691 TTTACTTGGCGCAGTGGTAA 57.742 45.000 10.83 9.83 0.00 2.85
2462 2678 2.257691 TTACTTGGCGCAGTGGTAAA 57.742 45.000 10.83 0.00 0.00 2.01
2463 2679 1.803334 TACTTGGCGCAGTGGTAAAG 58.197 50.000 10.83 3.42 0.00 1.85
2464 2680 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2465 2681 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2466 2682 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2471 2687 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2472 2688 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2473 2689 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2474 2690 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2475 2691 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2476 2692 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2477 2693 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2478 2694 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2479 2695 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2480 2696 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2481 2697 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2482 2698 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2483 2699 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2484 2700 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2485 2701 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2495 2711 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
2496 2712 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
2497 2713 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
2498 2714 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
2499 2715 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
2500 2716 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2501 2717 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
2502 2718 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
2503 2719 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
2504 2720 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
2505 2721 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
2506 2722 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
2507 2723 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
2508 2724 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
2509 2725 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
2523 2739 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2524 2740 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2525 2741 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2526 2742 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2527 2743 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2528 2744 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2529 2745 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2530 2746 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2531 2747 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2532 2748 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2533 2749 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2534 2750 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2535 2751 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2536 2752 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2537 2753 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2538 2754 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2539 2755 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2540 2756 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2541 2757 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2542 2758 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2543 2759 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2544 2760 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2545 2761 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2546 2762 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2547 2763 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2548 2764 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2549 2765 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2550 2766 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2551 2767 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2552 2768 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2553 2769 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2554 2770 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2555 2771 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2556 2772 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2557 2773 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2558 2774 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2559 2775 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2560 2776 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2567 2783 1.844130 ACCCAAAGTGGTCAGACCC 59.156 57.895 17.59 8.45 37.50 4.46
2568 2784 0.697854 ACCCAAAGTGGTCAGACCCT 60.698 55.000 17.59 10.65 37.50 4.34
2569 2785 0.478507 CCCAAAGTGGTCAGACCCTT 59.521 55.000 17.59 15.76 37.50 3.95
2570 2786 1.545651 CCCAAAGTGGTCAGACCCTTC 60.546 57.143 17.59 7.68 37.50 3.46
2571 2787 1.545651 CCAAAGTGGTCAGACCCTTCC 60.546 57.143 17.59 2.54 37.50 3.46
2572 2788 0.771755 AAAGTGGTCAGACCCTTCCC 59.228 55.000 17.59 0.05 37.50 3.97
2573 2789 1.134438 AAGTGGTCAGACCCTTCCCC 61.134 60.000 17.59 0.00 37.50 4.81
2574 2790 2.606519 TGGTCAGACCCTTCCCCG 60.607 66.667 17.59 0.00 37.50 5.73
2575 2791 2.284405 GGTCAGACCCTTCCCCGA 60.284 66.667 8.65 0.00 30.04 5.14
2576 2792 2.657066 GGTCAGACCCTTCCCCGAC 61.657 68.421 8.65 0.00 30.04 4.79
2577 2793 2.284405 TCAGACCCTTCCCCGACC 60.284 66.667 0.00 0.00 0.00 4.79
2578 2794 3.400054 CAGACCCTTCCCCGACCC 61.400 72.222 0.00 0.00 0.00 4.46
2579 2795 3.612607 AGACCCTTCCCCGACCCT 61.613 66.667 0.00 0.00 0.00 4.34
2580 2796 3.400054 GACCCTTCCCCGACCCTG 61.400 72.222 0.00 0.00 0.00 4.45
2606 2822 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
2607 2823 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
2608 2824 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
2609 2825 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
2610 2826 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
2611 2827 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
2616 2832 4.733542 GCACCGGGCTGCCCTTTA 62.734 66.667 33.39 0.00 42.67 1.85
2617 2833 2.034999 CACCGGGCTGCCCTTTAA 59.965 61.111 33.39 0.00 42.67 1.52
2618 2834 2.046285 CACCGGGCTGCCCTTTAAG 61.046 63.158 33.39 18.31 42.67 1.85
2619 2835 2.355115 CCGGGCTGCCCTTTAAGT 59.645 61.111 33.39 0.00 42.67 2.24
2620 2836 1.202769 ACCGGGCTGCCCTTTAAGTA 61.203 55.000 33.39 0.00 42.67 2.24
2621 2837 0.463833 CCGGGCTGCCCTTTAAGTAG 60.464 60.000 33.39 16.14 42.67 2.57
2622 2838 0.539986 CGGGCTGCCCTTTAAGTAGA 59.460 55.000 33.39 0.00 42.67 2.59
2623 2839 1.742750 CGGGCTGCCCTTTAAGTAGAC 60.743 57.143 33.39 4.65 42.67 2.59
2684 2901 1.026718 GTGGGATGAAACTCTGCCCG 61.027 60.000 0.00 0.00 41.79 6.13
2825 3135 9.531158 AGGGTCTGTCTAACATATATACTTACC 57.469 37.037 0.00 0.00 0.00 2.85
2991 3302 8.500773 TCAGCTAAAATTTAGTAAAACGTCAGG 58.499 33.333 13.56 0.00 0.00 3.86
3206 3517 1.486310 TCATATGGCCACGCTTCTTCT 59.514 47.619 8.16 0.00 0.00 2.85
3267 3578 9.282247 CTTCTGCATGTACATTTTGTTATCTTC 57.718 33.333 5.37 0.00 0.00 2.87
3272 3583 8.810427 GCATGTACATTTTGTTATCTTCCATTG 58.190 33.333 5.37 0.00 0.00 2.82
3321 3632 8.018677 TCGTTGATTCTAAACTTAAGCTGAAG 57.981 34.615 9.49 9.49 0.00 3.02
3370 3681 5.945191 TGGTTCTTTCATATGTTGCTCATGA 59.055 36.000 1.90 0.00 37.91 3.07
3438 3749 0.950555 TGCATCGAGCTGTGGTCAAC 60.951 55.000 0.00 0.00 45.94 3.18
3544 3855 2.958818 AGGACCATCCGCAGAAGTATA 58.041 47.619 0.00 0.00 42.75 1.47
3545 3856 3.305720 AGGACCATCCGCAGAAGTATAA 58.694 45.455 0.00 0.00 42.75 0.98
3679 3991 5.120830 GCCACAAAATTTGTTACACACACAA 59.879 36.000 8.85 0.00 43.23 3.33
3699 4011 0.041312 CGCGAACCTGACAAACTTGG 60.041 55.000 0.00 0.00 0.00 3.61
3768 4082 9.516314 GTTTGTGTGAAATTTTACTCTAGCTTT 57.484 29.630 13.55 0.00 0.00 3.51
3772 4086 7.113544 GTGTGAAATTTTACTCTAGCTTTGTGC 59.886 37.037 13.55 0.00 43.29 4.57
3818 4132 3.260632 TCATGTCTCTTTTGATCGACCCA 59.739 43.478 0.00 0.00 0.00 4.51
3844 4315 3.596940 TGTAGTACTCTCTCCATCCCC 57.403 52.381 0.00 0.00 0.00 4.81
3904 4816 2.434702 AGACGGAGGGATTATTGGACAC 59.565 50.000 0.00 0.00 0.00 3.67
3905 4817 2.169769 GACGGAGGGATTATTGGACACA 59.830 50.000 0.00 0.00 0.00 3.72
3906 4818 2.574369 ACGGAGGGATTATTGGACACAA 59.426 45.455 0.00 0.00 41.59 3.33
3907 4819 3.206150 CGGAGGGATTATTGGACACAAG 58.794 50.000 0.00 0.00 40.49 3.16
3972 4944 0.108138 GGTACAATCTGCCAGCGAGT 60.108 55.000 0.00 0.00 0.00 4.18
3975 4947 1.609208 ACAATCTGCCAGCGAGTTTT 58.391 45.000 0.00 0.00 0.00 2.43
4028 5046 9.474313 GGAGGATAAATGTGAGATCTATCTAGT 57.526 37.037 0.00 0.00 37.25 2.57
4058 5087 2.623416 ACACAAGTGCTAGCCCTTTTTC 59.377 45.455 9.97 0.00 0.00 2.29
4083 5112 4.182433 TGGCACAGGCGTTCACCA 62.182 61.111 0.00 0.00 42.47 4.17
4213 5242 3.080300 AGACCAAACGCCCAATTGATA 57.920 42.857 7.12 0.00 0.00 2.15
4220 5249 6.262273 ACCAAACGCCCAATTGATAGTAATAG 59.738 38.462 7.12 0.00 0.00 1.73
4264 5293 5.354234 ACATACTTAGAAAATCGGCCACAAG 59.646 40.000 2.24 0.00 0.00 3.16
4280 5310 4.666253 AGCACGGCTGGGCAATGT 62.666 61.111 24.49 0.00 37.57 2.71
4288 5318 0.895100 GCTGGGCAATGTGTTCAGGA 60.895 55.000 0.00 0.00 0.00 3.86
4292 5322 2.019984 GGGCAATGTGTTCAGGAGATC 58.980 52.381 0.00 0.00 0.00 2.75
4294 5324 2.681848 GGCAATGTGTTCAGGAGATCAG 59.318 50.000 0.00 0.00 0.00 2.90
4296 5326 3.622163 GCAATGTGTTCAGGAGATCAGAG 59.378 47.826 0.00 0.00 0.00 3.35
4297 5327 4.622457 GCAATGTGTTCAGGAGATCAGAGA 60.622 45.833 0.00 0.00 0.00 3.10
4299 5329 5.954153 ATGTGTTCAGGAGATCAGAGAAT 57.046 39.130 0.00 0.00 0.00 2.40
4300 5330 7.270779 CAATGTGTTCAGGAGATCAGAGAATA 58.729 38.462 0.00 0.00 0.00 1.75
4302 5332 7.429374 TGTGTTCAGGAGATCAGAGAATAAT 57.571 36.000 0.00 0.00 0.00 1.28
4304 5334 8.981659 TGTGTTCAGGAGATCAGAGAATAATAA 58.018 33.333 0.00 0.00 0.00 1.40
4305 5335 9.255304 GTGTTCAGGAGATCAGAGAATAATAAC 57.745 37.037 0.00 0.00 0.00 1.89
4306 5336 8.424918 TGTTCAGGAGATCAGAGAATAATAACC 58.575 37.037 0.00 0.00 0.00 2.85
4307 5337 7.220741 TCAGGAGATCAGAGAATAATAACCG 57.779 40.000 0.00 0.00 0.00 4.44
4308 5338 5.866633 CAGGAGATCAGAGAATAATAACCGC 59.133 44.000 0.00 0.00 0.00 5.68
4309 5339 4.859798 GGAGATCAGAGAATAATAACCGCG 59.140 45.833 0.00 0.00 0.00 6.46
4312 5342 6.692486 AGATCAGAGAATAATAACCGCGAAT 58.308 36.000 8.23 0.00 0.00 3.34
4313 5343 6.809196 AGATCAGAGAATAATAACCGCGAATC 59.191 38.462 8.23 0.00 0.00 2.52
4314 5344 5.227908 TCAGAGAATAATAACCGCGAATCC 58.772 41.667 8.23 0.00 0.00 3.01
4317 5347 6.202954 CAGAGAATAATAACCGCGAATCCTTT 59.797 38.462 8.23 0.00 0.00 3.11
4318 5348 6.766467 AGAGAATAATAACCGCGAATCCTTTT 59.234 34.615 8.23 0.00 0.00 2.27
4319 5349 7.282450 AGAGAATAATAACCGCGAATCCTTTTT 59.718 33.333 8.23 0.00 0.00 1.94
4320 5350 8.441312 AGAATAATAACCGCGAATCCTTTTTA 57.559 30.769 8.23 0.00 0.00 1.52
4321 5351 8.557029 AGAATAATAACCGCGAATCCTTTTTAG 58.443 33.333 8.23 0.00 0.00 1.85
4322 5352 7.797038 ATAATAACCGCGAATCCTTTTTAGT 57.203 32.000 8.23 0.00 0.00 2.24
4323 5353 8.891671 ATAATAACCGCGAATCCTTTTTAGTA 57.108 30.769 8.23 0.00 0.00 1.82
4324 5354 7.614124 AATAACCGCGAATCCTTTTTAGTAA 57.386 32.000 8.23 0.00 0.00 2.24
4325 5355 5.541098 AACCGCGAATCCTTTTTAGTAAG 57.459 39.130 8.23 0.00 0.00 2.34
4326 5356 3.937079 ACCGCGAATCCTTTTTAGTAAGG 59.063 43.478 8.23 0.00 45.01 2.69
4327 5357 3.311596 CCGCGAATCCTTTTTAGTAAGGG 59.688 47.826 8.23 0.00 44.01 3.95
4328 5358 4.186159 CGCGAATCCTTTTTAGTAAGGGA 58.814 43.478 0.00 0.00 44.01 4.20
4329 5359 4.270325 CGCGAATCCTTTTTAGTAAGGGAG 59.730 45.833 0.00 0.00 44.01 4.30
4330 5360 5.425630 GCGAATCCTTTTTAGTAAGGGAGA 58.574 41.667 0.00 0.00 44.01 3.71
4331 5361 5.524281 GCGAATCCTTTTTAGTAAGGGAGAG 59.476 44.000 0.00 0.00 44.01 3.20
4332 5362 6.629739 GCGAATCCTTTTTAGTAAGGGAGAGA 60.630 42.308 0.00 0.00 44.01 3.10
4333 5363 7.328737 CGAATCCTTTTTAGTAAGGGAGAGAA 58.671 38.462 0.00 0.00 44.01 2.87
4334 5364 7.822822 CGAATCCTTTTTAGTAAGGGAGAGAAA 59.177 37.037 0.00 0.00 44.01 2.52
4335 5365 9.516546 GAATCCTTTTTAGTAAGGGAGAGAAAA 57.483 33.333 0.00 0.00 44.01 2.29
4336 5366 9.877222 AATCCTTTTTAGTAAGGGAGAGAAAAA 57.123 29.630 0.00 0.00 44.01 1.94
4418 5448 5.105997 ACCACTATACTACAACGACTTGGAC 60.106 44.000 0.00 0.00 0.00 4.02
4420 5450 2.995466 TACTACAACGACTTGGACGG 57.005 50.000 0.00 0.00 34.93 4.79
4426 5457 2.096335 ACAACGACTTGGACGGTTTTTC 59.904 45.455 0.00 0.00 34.93 2.29
4435 5466 1.006688 ACGGTTTTTCATTGGCGGC 60.007 52.632 0.00 0.00 0.00 6.53
4436 5467 1.006805 CGGTTTTTCATTGGCGGCA 60.007 52.632 7.97 7.97 0.00 5.69
4483 5514 5.305386 TGAGAACTCAAAGACTCATCCAGAA 59.695 40.000 1.79 0.00 36.53 3.02
4488 5519 5.130145 ACTCAAAGACTCATCCAGAATAGGG 59.870 44.000 0.00 0.00 0.00 3.53
4499 5530 3.976654 TCCAGAATAGGGCTAGCTGAAAT 59.023 43.478 15.72 0.70 0.00 2.17
4503 5534 3.778954 ATAGGGCTAGCTGAAATGGAC 57.221 47.619 15.72 0.00 0.00 4.02
4516 5547 1.846541 AATGGACAAAACCGCAAACG 58.153 45.000 0.00 0.00 39.67 3.60
4523 5554 0.515564 AAAACCGCAAACGAGATCGG 59.484 50.000 7.22 8.76 46.61 4.18
4551 5582 6.433404 CCATGAGGATTCCTTCAAATGGATAG 59.567 42.308 21.63 5.63 35.01 2.08
4553 5584 6.835174 TGAGGATTCCTTCAAATGGATAGAG 58.165 40.000 6.68 0.00 31.76 2.43
4577 5610 3.412624 GAGGCCATGGAGGAGCACC 62.413 68.421 18.40 4.89 41.22 5.01
4622 5660 2.973082 GACACCAATTGGCCAGCC 59.027 61.111 24.79 0.38 39.32 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.362120 CCCCAGGCAGCCTTTGAG 60.362 66.667 12.86 0.00 0.00 3.02
10 11 0.668535 GAATAATCAACGCCCCAGGC 59.331 55.000 0.00 0.00 46.75 4.85
11 12 1.133792 AGGAATAATCAACGCCCCAGG 60.134 52.381 0.00 0.00 0.00 4.45
12 13 1.949525 CAGGAATAATCAACGCCCCAG 59.050 52.381 0.00 0.00 0.00 4.45
13 14 2.021723 GCAGGAATAATCAACGCCCCA 61.022 52.381 0.00 0.00 0.00 4.96
14 15 0.668535 GCAGGAATAATCAACGCCCC 59.331 55.000 0.00 0.00 0.00 5.80
15 16 0.668535 GGCAGGAATAATCAACGCCC 59.331 55.000 0.00 0.00 32.45 6.13
16 17 0.307760 CGGCAGGAATAATCAACGCC 59.692 55.000 0.00 0.00 34.22 5.68
17 18 0.317020 GCGGCAGGAATAATCAACGC 60.317 55.000 0.00 0.00 38.94 4.84
18 19 0.307760 GGCGGCAGGAATAATCAACG 59.692 55.000 3.07 0.00 0.00 4.10
19 20 0.307760 CGGCGGCAGGAATAATCAAC 59.692 55.000 10.53 0.00 0.00 3.18
20 21 1.444119 GCGGCGGCAGGAATAATCAA 61.444 55.000 9.78 0.00 39.62 2.57
21 22 1.891919 GCGGCGGCAGGAATAATCA 60.892 57.895 9.78 0.00 39.62 2.57
22 23 0.320421 TAGCGGCGGCAGGAATAATC 60.320 55.000 19.21 0.00 43.41 1.75
23 24 0.602905 GTAGCGGCGGCAGGAATAAT 60.603 55.000 19.21 0.00 43.41 1.28
24 25 1.227438 GTAGCGGCGGCAGGAATAA 60.227 57.895 19.21 0.00 43.41 1.40
25 26 0.824595 TAGTAGCGGCGGCAGGAATA 60.825 55.000 19.21 4.17 43.41 1.75
26 27 1.472662 ATAGTAGCGGCGGCAGGAAT 61.473 55.000 19.21 5.13 43.41 3.01
27 28 2.083835 GATAGTAGCGGCGGCAGGAA 62.084 60.000 19.21 1.52 43.41 3.36
28 29 2.520982 ATAGTAGCGGCGGCAGGA 60.521 61.111 19.21 0.03 43.41 3.86
29 30 1.241990 TAGATAGTAGCGGCGGCAGG 61.242 60.000 19.21 0.00 43.41 4.85
30 31 0.811915 ATAGATAGTAGCGGCGGCAG 59.188 55.000 19.21 0.00 43.41 4.85
31 32 2.118313 TATAGATAGTAGCGGCGGCA 57.882 50.000 19.21 1.65 43.41 5.69
32 33 4.454847 TCATATATAGATAGTAGCGGCGGC 59.545 45.833 9.78 8.43 40.37 6.53
33 34 6.745159 ATCATATATAGATAGTAGCGGCGG 57.255 41.667 9.78 0.00 0.00 6.13
34 35 8.252964 TGTATCATATATAGATAGTAGCGGCG 57.747 38.462 0.51 0.51 0.00 6.46
79 80 8.757164 ACGAAAATGATTCCCTTTTCATAAAC 57.243 30.769 15.85 0.00 39.98 2.01
87 88 7.176690 ACATGAGTAACGAAAATGATTCCCTTT 59.823 33.333 0.00 0.00 0.00 3.11
108 109 8.423349 AGAAAGAAATTGTTTGATTCCACATGA 58.577 29.630 0.00 0.00 0.00 3.07
131 132 0.196118 AAGGGGGAAGGTGAGGAGAA 59.804 55.000 0.00 0.00 0.00 2.87
144 155 0.394899 GCCTCTCATGACAAAGGGGG 60.395 60.000 13.37 5.10 33.39 5.40
177 188 0.839277 ATGGATGGCGAGGAATGACA 59.161 50.000 0.00 0.00 0.00 3.58
198 222 3.189287 CCAACAGGCTTAACACTGATGAC 59.811 47.826 11.31 0.00 39.11 3.06
204 228 4.386711 GAGTAACCAACAGGCTTAACACT 58.613 43.478 0.00 0.00 0.00 3.55
232 263 1.620819 ACATCGAGCCACAGAAGAAGT 59.379 47.619 0.00 0.00 0.00 3.01
238 269 1.293179 CCACACATCGAGCCACAGA 59.707 57.895 0.00 0.00 0.00 3.41
240 271 2.358615 GCCACACATCGAGCCACA 60.359 61.111 0.00 0.00 0.00 4.17
245 276 2.040544 GGGTTGGCCACACATCGAG 61.041 63.158 3.88 0.00 36.17 4.04
257 288 3.005540 GCCGAAGCATTGGGGTTGG 62.006 63.158 0.00 0.00 45.01 3.77
298 329 2.067013 GCGTCACAGAGAAACCCTAAC 58.933 52.381 0.00 0.00 0.00 2.34
311 342 3.072944 TCACAATCAATGATGCGTCACA 58.927 40.909 11.65 0.00 37.14 3.58
315 346 3.878699 TGCTATCACAATCAATGATGCGT 59.121 39.130 0.00 0.00 37.38 5.24
332 363 0.251354 CACCAGACTGGCACTGCTAT 59.749 55.000 21.95 0.00 42.67 2.97
333 364 0.831711 TCACCAGACTGGCACTGCTA 60.832 55.000 21.95 0.00 42.67 3.49
358 389 7.781324 AGATGGACAAGTTGGACAAAAATAT 57.219 32.000 7.96 0.00 0.00 1.28
360 391 7.595819 TTAGATGGACAAGTTGGACAAAAAT 57.404 32.000 7.96 0.00 0.00 1.82
364 395 6.303054 TCATTTAGATGGACAAGTTGGACAA 58.697 36.000 7.96 0.00 33.93 3.18
394 425 1.203052 AGTCATTGATGCCGCAAAAGG 59.797 47.619 0.00 0.00 0.00 3.11
399 430 2.463620 GCGAGTCATTGATGCCGCA 61.464 57.895 18.57 0.00 41.89 5.69
416 447 1.953559 TGACGAGGATTTATGCCTGC 58.046 50.000 0.00 0.00 35.44 4.85
418 449 6.772716 ACAATAATTGACGAGGATTTATGCCT 59.227 34.615 0.00 0.00 38.81 4.75
460 491 0.899720 CCGTGTAAACTCTAGCCCCA 59.100 55.000 0.00 0.00 0.00 4.96
462 493 2.493278 TGTACCGTGTAAACTCTAGCCC 59.507 50.000 0.00 0.00 0.00 5.19
469 500 6.089820 CGTTGTATTGATGTACCGTGTAAACT 59.910 38.462 0.00 0.00 0.00 2.66
477 508 3.305094 GGTGTCGTTGTATTGATGTACCG 59.695 47.826 0.00 0.00 0.00 4.02
483 514 3.306917 TGTCGGTGTCGTTGTATTGAT 57.693 42.857 0.00 0.00 37.69 2.57
486 517 3.102052 AGTTGTCGGTGTCGTTGTATT 57.898 42.857 0.00 0.00 37.69 1.89
489 520 1.662122 GAAAGTTGTCGGTGTCGTTGT 59.338 47.619 0.00 0.00 37.69 3.32
491 522 2.199236 GAGAAAGTTGTCGGTGTCGTT 58.801 47.619 0.00 0.00 37.69 3.85
497 528 4.281182 AGACTACATGAGAAAGTTGTCGGT 59.719 41.667 0.00 0.00 42.54 4.69
508 551 3.020274 GAGAGCACCAGACTACATGAGA 58.980 50.000 0.00 0.00 0.00 3.27
528 571 2.664698 CGACGTGACAAAGATGAGACGA 60.665 50.000 0.00 0.00 37.78 4.20
553 597 1.693606 TCACACTGGCATGAGAGAACA 59.306 47.619 0.00 0.00 0.00 3.18
567 611 7.418368 CCTCATTATTCTCATAGGTGTCACACT 60.418 40.741 8.12 2.46 34.40 3.55
575 619 5.013913 AGCATGCCTCATTATTCTCATAGGT 59.986 40.000 15.66 0.00 0.00 3.08
619 664 5.034852 TGAGAAGAAGTCATCACAAACCA 57.965 39.130 0.00 0.00 0.00 3.67
620 665 5.049129 CCTTGAGAAGAAGTCATCACAAACC 60.049 44.000 0.00 0.00 0.00 3.27
683 728 4.634004 ACTTGTCGTTGTTGATCACAGAAA 59.366 37.500 0.00 0.00 36.48 2.52
706 751 6.401394 CATGACACTCCATCTTCAGAGTAAA 58.599 40.000 0.00 0.00 41.38 2.01
713 758 3.421919 TTGCATGACACTCCATCTTCA 57.578 42.857 0.00 0.00 0.00 3.02
739 784 2.666190 CCTGTATGGGCGATGGCG 60.666 66.667 0.00 0.00 41.24 5.69
768 813 0.178990 GAGTCCTTGGGCCACACTTT 60.179 55.000 5.23 0.00 0.00 2.66
769 814 1.456287 GAGTCCTTGGGCCACACTT 59.544 57.895 5.23 0.00 0.00 3.16
770 815 2.529744 GGAGTCCTTGGGCCACACT 61.530 63.158 5.23 8.92 0.00 3.55
823 890 8.436778 ATGTGATACATATGGTAAGCAACCTAA 58.563 33.333 7.80 0.00 42.32 2.69
824 891 7.877612 CATGTGATACATATGGTAAGCAACCTA 59.122 37.037 7.80 1.26 42.27 3.08
825 892 6.712095 CATGTGATACATATGGTAAGCAACCT 59.288 38.462 7.80 0.00 42.27 3.50
826 893 6.072508 CCATGTGATACATATGGTAAGCAACC 60.073 42.308 15.84 1.39 44.49 3.77
827 894 6.902341 CCATGTGATACATATGGTAAGCAAC 58.098 40.000 15.84 0.00 44.49 4.17
836 903 8.224389 TGGAAAGAAACCATGTGATACATATG 57.776 34.615 0.00 0.00 36.53 1.78
837 904 7.503566 CCTGGAAAGAAACCATGTGATACATAT 59.496 37.037 0.00 0.00 36.53 1.78
838 905 6.828273 CCTGGAAAGAAACCATGTGATACATA 59.172 38.462 0.00 0.00 36.53 2.29
839 906 5.653769 CCTGGAAAGAAACCATGTGATACAT 59.346 40.000 0.00 0.00 39.91 2.29
840 907 5.009631 CCTGGAAAGAAACCATGTGATACA 58.990 41.667 0.00 0.00 36.79 2.29
841 908 4.399303 CCCTGGAAAGAAACCATGTGATAC 59.601 45.833 0.00 0.00 36.79 2.24
842 909 4.044065 ACCCTGGAAAGAAACCATGTGATA 59.956 41.667 0.00 0.00 36.79 2.15
843 910 3.181418 ACCCTGGAAAGAAACCATGTGAT 60.181 43.478 0.00 0.00 36.79 3.06
844 911 2.176798 ACCCTGGAAAGAAACCATGTGA 59.823 45.455 0.00 0.00 36.79 3.58
845 912 2.597455 ACCCTGGAAAGAAACCATGTG 58.403 47.619 0.00 0.00 36.79 3.21
846 913 2.965147 CAACCCTGGAAAGAAACCATGT 59.035 45.455 0.00 0.00 36.79 3.21
847 914 2.965147 ACAACCCTGGAAAGAAACCATG 59.035 45.455 0.00 0.00 36.79 3.66
848 915 3.328535 ACAACCCTGGAAAGAAACCAT 57.671 42.857 0.00 0.00 36.79 3.55
849 916 2.838637 ACAACCCTGGAAAGAAACCA 57.161 45.000 0.00 0.00 35.96 3.67
850 917 3.196901 ACAAACAACCCTGGAAAGAAACC 59.803 43.478 0.00 0.00 0.00 3.27
851 918 4.465632 ACAAACAACCCTGGAAAGAAAC 57.534 40.909 0.00 0.00 0.00 2.78
852 919 5.265989 AGTACAAACAACCCTGGAAAGAAA 58.734 37.500 0.00 0.00 0.00 2.52
853 920 4.862371 AGTACAAACAACCCTGGAAAGAA 58.138 39.130 0.00 0.00 0.00 2.52
854 921 4.457466 GAGTACAAACAACCCTGGAAAGA 58.543 43.478 0.00 0.00 0.00 2.52
855 922 3.568430 GGAGTACAAACAACCCTGGAAAG 59.432 47.826 0.00 0.00 0.00 2.62
927 1011 1.079336 GTGCTGGTAAGACCGACCC 60.079 63.158 0.00 0.00 42.58 4.46
946 1043 1.733041 CGTGGTGGTCACAGCTACG 60.733 63.158 3.40 4.70 46.36 3.51
1479 1606 1.781786 TCATCCAGAGACTACCCTGC 58.218 55.000 0.00 0.00 0.00 4.85
1536 1663 7.577616 GCCAAAGCAGTCCAAAAATTCTAGTAT 60.578 37.037 0.00 0.00 39.53 2.12
1537 1664 6.294508 GCCAAAGCAGTCCAAAAATTCTAGTA 60.295 38.462 0.00 0.00 39.53 1.82
1538 1665 5.509670 GCCAAAGCAGTCCAAAAATTCTAGT 60.510 40.000 0.00 0.00 39.53 2.57
1539 1666 4.925646 GCCAAAGCAGTCCAAAAATTCTAG 59.074 41.667 0.00 0.00 39.53 2.43
1630 1757 1.963515 AGTGTGCTTTGTCCCCAATTC 59.036 47.619 0.00 0.00 0.00 2.17
1637 1765 1.869767 CAGAGACAGTGTGCTTTGTCC 59.130 52.381 0.00 0.00 43.64 4.02
1644 1772 3.371102 TCTACAACAGAGACAGTGTGC 57.629 47.619 0.00 0.00 0.00 4.57
1700 1828 4.466370 TGTGAAATACTGGTCCGAGAGAAT 59.534 41.667 0.00 0.00 0.00 2.40
1701 1829 3.830178 TGTGAAATACTGGTCCGAGAGAA 59.170 43.478 0.00 0.00 0.00 2.87
1705 1836 2.259618 CGTGTGAAATACTGGTCCGAG 58.740 52.381 0.00 0.00 0.00 4.63
1707 1838 0.719465 GCGTGTGAAATACTGGTCCG 59.281 55.000 0.00 0.00 0.00 4.79
1735 1866 7.506114 AGTACTAGAAATTAAATCGCATGGGA 58.494 34.615 15.52 15.52 0.00 4.37
1736 1867 7.730364 AGTACTAGAAATTAAATCGCATGGG 57.270 36.000 2.76 2.76 0.00 4.00
1818 1949 8.435187 TGGCTGAATTTCTACTCAGAATCATAT 58.565 33.333 3.32 0.00 41.38 1.78
2007 2223 4.142816 ACTTTCATGCTGTCGCTGTATTTC 60.143 41.667 0.00 0.00 36.97 2.17
2016 2232 1.135859 GCAAGGACTTTCATGCTGTCG 60.136 52.381 0.00 0.00 35.93 4.35
2139 2355 2.352805 GGCTGTGGACAAGGGGAG 59.647 66.667 0.00 0.00 0.00 4.30
2235 2451 4.047166 ACATCCCATCCTTGAATACCTCA 58.953 43.478 0.00 0.00 0.00 3.86
2358 2574 1.273327 CAAGGGATTGCCAAACAGGAC 59.727 52.381 0.00 0.00 41.22 3.85
2359 2575 1.631405 CAAGGGATTGCCAAACAGGA 58.369 50.000 0.00 0.00 41.22 3.86
2374 2590 2.042639 CCATTCCCCTGCCCAAGG 60.043 66.667 0.00 0.00 46.94 3.61
2443 2659 2.147958 CTTTACCACTGCGCCAAGTAA 58.852 47.619 4.18 5.11 0.00 2.24
2444 2660 1.803334 CTTTACCACTGCGCCAAGTA 58.197 50.000 4.18 0.00 0.00 2.24
2445 2661 1.515521 GCTTTACCACTGCGCCAAGT 61.516 55.000 4.18 0.00 0.00 3.16
2446 2662 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2447 2663 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2448 2664 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2449 2665 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2453 2669 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2454 2670 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2455 2671 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2456 2672 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2457 2673 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2458 2674 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2459 2675 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2460 2676 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2461 2677 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2462 2678 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2463 2679 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2464 2680 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2465 2681 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2466 2682 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2467 2683 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2468 2684 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2479 2695 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
2480 2696 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
2481 2697 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
2482 2698 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
2483 2699 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
2484 2700 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
2485 2701 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
2486 2702 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
2487 2703 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
2488 2704 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
2489 2705 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
2490 2706 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2491 2707 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2492 2708 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2493 2709 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2494 2710 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2495 2711 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2496 2712 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2497 2713 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2498 2714 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2499 2715 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2500 2716 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2501 2717 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2513 2729 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2514 2730 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2515 2731 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2516 2732 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2517 2733 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2518 2734 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2519 2735 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2520 2736 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2521 2737 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2522 2738 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2523 2739 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2524 2740 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2525 2741 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2526 2742 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2527 2743 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2528 2744 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2529 2745 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2530 2746 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2531 2747 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2532 2748 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2533 2749 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2534 2750 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2535 2751 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2536 2752 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2537 2753 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2538 2754 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2539 2755 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2549 2765 0.697854 AGGGTCTGACCACTTTGGGT 60.698 55.000 26.94 0.00 43.37 4.51
2550 2766 0.478507 AAGGGTCTGACCACTTTGGG 59.521 55.000 26.94 0.00 43.37 4.12
2551 2767 1.545651 GGAAGGGTCTGACCACTTTGG 60.546 57.143 26.94 0.00 41.02 3.28
2552 2768 1.545651 GGGAAGGGTCTGACCACTTTG 60.546 57.143 26.94 0.00 41.02 2.77
2553 2769 0.771755 GGGAAGGGTCTGACCACTTT 59.228 55.000 26.94 17.45 41.02 2.66
2554 2770 1.134438 GGGGAAGGGTCTGACCACTT 61.134 60.000 26.94 24.37 41.02 3.16
2555 2771 1.539124 GGGGAAGGGTCTGACCACT 60.539 63.158 26.94 18.28 41.02 4.00
2556 2772 2.955881 CGGGGAAGGGTCTGACCAC 61.956 68.421 26.94 16.44 41.02 4.16
2557 2773 2.606519 CGGGGAAGGGTCTGACCA 60.607 66.667 26.94 0.00 41.02 4.02
2558 2774 2.284405 TCGGGGAAGGGTCTGACC 60.284 66.667 18.65 18.65 37.60 4.02
2559 2775 2.657066 GGTCGGGGAAGGGTCTGAC 61.657 68.421 0.00 0.00 0.00 3.51
2560 2776 2.284405 GGTCGGGGAAGGGTCTGA 60.284 66.667 0.00 0.00 0.00 3.27
2561 2777 3.400054 GGGTCGGGGAAGGGTCTG 61.400 72.222 0.00 0.00 0.00 3.51
2562 2778 3.612607 AGGGTCGGGGAAGGGTCT 61.613 66.667 0.00 0.00 0.00 3.85
2563 2779 3.400054 CAGGGTCGGGGAAGGGTC 61.400 72.222 0.00 0.00 0.00 4.46
2578 2794 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2581 2797 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2582 2798 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2583 2799 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2584 2800 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2590 2806 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
2591 2807 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
2592 2808 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
2593 2809 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
2594 2810 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
2603 2819 5.503239 AAGTCTACTTAAAGGGCAGCCCG 62.503 52.174 25.79 12.90 40.87 6.13
2604 2820 1.560146 AGTCTACTTAAAGGGCAGCCC 59.440 52.381 24.90 24.90 45.90 5.19
2605 2821 3.351794 AAGTCTACTTAAAGGGCAGCC 57.648 47.619 1.26 1.26 33.79 4.85
2606 2822 5.938710 AGTAAAAGTCTACTTAAAGGGCAGC 59.061 40.000 0.00 0.00 34.61 5.25
2607 2823 7.119407 GGAAGTAAAAGTCTACTTAAAGGGCAG 59.881 40.741 0.00 0.00 41.23 4.85
2608 2824 6.938596 GGAAGTAAAAGTCTACTTAAAGGGCA 59.061 38.462 0.00 0.00 41.23 5.36
2609 2825 6.938596 TGGAAGTAAAAGTCTACTTAAAGGGC 59.061 38.462 0.00 0.00 41.23 5.19
2610 2826 9.516546 AATGGAAGTAAAAGTCTACTTAAAGGG 57.483 33.333 0.00 0.00 41.23 3.95
2613 2829 9.511272 GGGAATGGAAGTAAAAGTCTACTTAAA 57.489 33.333 0.00 0.00 41.23 1.52
2614 2830 8.887393 AGGGAATGGAAGTAAAAGTCTACTTAA 58.113 33.333 0.00 0.00 41.23 1.85
2615 2831 8.445361 AGGGAATGGAAGTAAAAGTCTACTTA 57.555 34.615 0.00 0.00 41.23 2.24
2616 2832 7.331089 AGGGAATGGAAGTAAAAGTCTACTT 57.669 36.000 0.00 0.00 43.31 2.24
2617 2833 6.954352 AGGGAATGGAAGTAAAAGTCTACT 57.046 37.500 0.00 0.00 33.41 2.57
2618 2834 6.940867 ACAAGGGAATGGAAGTAAAAGTCTAC 59.059 38.462 0.00 0.00 0.00 2.59
2619 2835 7.086685 ACAAGGGAATGGAAGTAAAAGTCTA 57.913 36.000 0.00 0.00 0.00 2.59
2620 2836 5.953571 ACAAGGGAATGGAAGTAAAAGTCT 58.046 37.500 0.00 0.00 0.00 3.24
2621 2837 6.447162 CAACAAGGGAATGGAAGTAAAAGTC 58.553 40.000 0.00 0.00 0.00 3.01
2622 2838 5.304357 CCAACAAGGGAATGGAAGTAAAAGT 59.696 40.000 0.00 0.00 36.27 2.66
2623 2839 5.304357 ACCAACAAGGGAATGGAAGTAAAAG 59.696 40.000 0.00 0.00 43.89 2.27
2825 3135 5.293569 GTCGTCCAAAATAGAACAGGGTATG 59.706 44.000 0.00 0.00 0.00 2.39
2984 3295 3.541632 ACTGACAAATTGTTCCTGACGT 58.458 40.909 0.00 0.00 0.00 4.34
2985 3296 5.666969 TTACTGACAAATTGTTCCTGACG 57.333 39.130 0.00 0.00 0.00 4.35
3150 3461 9.689976 CACTTATTCACCAAAACATTGAACATA 57.310 29.630 0.00 0.00 0.00 2.29
3267 3578 3.630769 CAGAGACCATGTCAATCCAATGG 59.369 47.826 0.00 0.00 34.60 3.16
3296 3607 7.870954 TCTTCAGCTTAAGTTTAGAATCAACGA 59.129 33.333 7.51 0.00 0.00 3.85
3399 3710 0.179111 CGGCGCTCTTGTATCTTCCA 60.179 55.000 7.64 0.00 0.00 3.53
3544 3855 0.322322 TCGCCGTAAACCACATCCTT 59.678 50.000 0.00 0.00 0.00 3.36
3545 3856 0.390735 GTCGCCGTAAACCACATCCT 60.391 55.000 0.00 0.00 0.00 3.24
3679 3991 0.655733 CAAGTTTGTCAGGTTCGCGT 59.344 50.000 5.77 0.00 0.00 6.01
3699 4011 7.272037 TCTTGTTTTCCACCTCTTTATTGAC 57.728 36.000 0.00 0.00 0.00 3.18
3768 4082 4.263435 TGATCATAGCATTCAACTGCACA 58.737 39.130 0.00 0.00 44.77 4.57
3810 4124 6.069331 AGAGTACTACATAACATGGGTCGAT 58.931 40.000 0.00 0.00 33.60 3.59
3818 4132 6.722129 GGGATGGAGAGAGTACTACATAACAT 59.278 42.308 0.00 0.00 40.99 2.71
3865 4355 4.152759 CCGTCTCAAAAATAAGTGCCGTTA 59.847 41.667 0.00 0.00 0.00 3.18
4001 5019 9.473007 CTAGATAGATCTCACATTTATCCTCCA 57.527 37.037 0.00 0.00 38.32 3.86
4028 5046 4.753107 GGCTAGCACTTGTGTTTACTTACA 59.247 41.667 18.24 0.00 0.00 2.41
4038 5067 2.887152 AGAAAAAGGGCTAGCACTTGTG 59.113 45.455 32.16 0.00 38.98 3.33
4039 5068 3.149981 GAGAAAAAGGGCTAGCACTTGT 58.850 45.455 32.16 24.99 38.98 3.16
4040 5069 3.149196 TGAGAAAAAGGGCTAGCACTTG 58.851 45.455 32.16 0.00 38.98 3.16
4041 5070 3.508845 TGAGAAAAAGGGCTAGCACTT 57.491 42.857 26.74 26.74 42.18 3.16
4042 5071 3.149981 GTTGAGAAAAAGGGCTAGCACT 58.850 45.455 15.55 15.55 0.00 4.40
4043 5072 2.884639 TGTTGAGAAAAAGGGCTAGCAC 59.115 45.455 18.24 14.32 0.00 4.40
4044 5073 3.149196 CTGTTGAGAAAAAGGGCTAGCA 58.851 45.455 18.24 0.00 0.00 3.49
4045 5074 3.057946 CACTGTTGAGAAAAAGGGCTAGC 60.058 47.826 6.04 6.04 0.00 3.42
4046 5075 3.503748 CCACTGTTGAGAAAAAGGGCTAG 59.496 47.826 0.00 0.00 0.00 3.42
4047 5076 3.486383 CCACTGTTGAGAAAAAGGGCTA 58.514 45.455 0.00 0.00 0.00 3.93
4048 5077 2.310538 CCACTGTTGAGAAAAAGGGCT 58.689 47.619 0.00 0.00 0.00 5.19
4058 5087 2.610694 CGCCTGTGCCACTGTTGAG 61.611 63.158 0.00 0.00 0.00 3.02
4095 5124 6.857437 ATTTAATTTTCTTCTCACCCCTGG 57.143 37.500 0.00 0.00 0.00 4.45
4131 5160 1.376609 GATTCTCGCAACGCCCCAAT 61.377 55.000 0.00 0.00 0.00 3.16
4132 5161 2.033448 ATTCTCGCAACGCCCCAA 59.967 55.556 0.00 0.00 0.00 4.12
4245 5274 2.487762 TGCTTGTGGCCGATTTTCTAAG 59.512 45.455 0.00 0.00 40.92 2.18
4247 5276 1.810151 GTGCTTGTGGCCGATTTTCTA 59.190 47.619 0.00 0.00 40.92 2.10
4249 5278 0.729140 CGTGCTTGTGGCCGATTTTC 60.729 55.000 0.00 0.00 40.92 2.29
4264 5293 4.424566 CACATTGCCCAGCCGTGC 62.425 66.667 0.00 0.00 0.00 5.34
4273 5303 2.681848 CTGATCTCCTGAACACATTGCC 59.318 50.000 0.00 0.00 0.00 4.52
4275 5305 5.082251 TCTCTGATCTCCTGAACACATTG 57.918 43.478 0.00 0.00 0.00 2.82
4280 5310 8.424918 GGTTATTATTCTCTGATCTCCTGAACA 58.575 37.037 0.00 0.00 0.00 3.18
4288 5318 5.707242 TCGCGGTTATTATTCTCTGATCT 57.293 39.130 6.13 0.00 0.00 2.75
4292 5322 5.230942 AGGATTCGCGGTTATTATTCTCTG 58.769 41.667 6.13 0.00 0.00 3.35
4294 5324 6.541111 AAAGGATTCGCGGTTATTATTCTC 57.459 37.500 6.13 0.00 0.00 2.87
4296 5326 8.340443 ACTAAAAAGGATTCGCGGTTATTATTC 58.660 33.333 6.13 0.00 0.00 1.75
4297 5327 8.217131 ACTAAAAAGGATTCGCGGTTATTATT 57.783 30.769 6.13 0.00 0.00 1.40
4299 5329 8.715191 TTACTAAAAAGGATTCGCGGTTATTA 57.285 30.769 6.13 0.00 0.00 0.98
4300 5330 7.614124 TTACTAAAAAGGATTCGCGGTTATT 57.386 32.000 6.13 0.00 0.00 1.40
4302 5332 6.651755 CTTACTAAAAAGGATTCGCGGTTA 57.348 37.500 6.13 0.00 0.00 2.85
4418 5448 0.598680 TTGCCGCCAATGAAAAACCG 60.599 50.000 0.00 0.00 0.00 4.44
4420 5450 0.512518 GCTTGCCGCCAATGAAAAAC 59.487 50.000 0.00 0.00 0.00 2.43
4426 5457 0.386476 ACATATGCTTGCCGCCAATG 59.614 50.000 1.58 5.68 38.05 2.82
4435 5466 5.068636 AGATTCAGCCCTTACATATGCTTG 58.931 41.667 1.58 0.00 30.08 4.01
4436 5467 5.316158 AGATTCAGCCCTTACATATGCTT 57.684 39.130 1.58 0.00 30.08 3.91
4439 5470 6.528321 TCTCAAGATTCAGCCCTTACATATG 58.472 40.000 0.00 0.00 0.00 1.78
4483 5514 3.048600 TGTCCATTTCAGCTAGCCCTAT 58.951 45.455 12.13 0.00 0.00 2.57
4488 5519 3.670627 CGGTTTTGTCCATTTCAGCTAGC 60.671 47.826 6.62 6.62 0.00 3.42
4499 5530 0.378962 CTCGTTTGCGGTTTTGTCCA 59.621 50.000 0.00 0.00 38.89 4.02
4503 5534 1.591248 CGATCTCGTTTGCGGTTTTG 58.409 50.000 0.00 0.00 38.89 2.44
4516 5547 0.683973 ATCCTCATGGCACCGATCTC 59.316 55.000 0.00 0.00 0.00 2.75
4523 5554 2.425143 TGAAGGAATCCTCATGGCAC 57.575 50.000 0.56 0.00 30.89 5.01
4524 5555 3.454719 TTTGAAGGAATCCTCATGGCA 57.545 42.857 0.56 0.00 30.89 4.92
4551 5582 1.331214 CTCCATGGCCTCTCTCTCTC 58.669 60.000 6.96 0.00 0.00 3.20
4553 5584 0.105760 TCCTCCATGGCCTCTCTCTC 60.106 60.000 6.96 0.00 35.26 3.20
4596 5629 1.019278 CAATTGGTGTCCGACCTCCG 61.019 60.000 0.00 0.00 46.32 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.