Multiple sequence alignment - TraesCS7B01G019600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G019600 chr7B 100.000 3146 0 0 1 3146 16832282 16835427 0.000000e+00 5810
1 TraesCS7B01G019600 chr7B 89.028 1923 108 38 858 2726 725604684 725606557 0.000000e+00 2287
2 TraesCS7B01G019600 chr7B 89.028 1923 108 38 858 2726 725640279 725642152 0.000000e+00 2287
3 TraesCS7B01G019600 chr7B 92.127 1067 49 17 1876 2923 682355109 682354059 0.000000e+00 1472
4 TraesCS7B01G019600 chr7B 82.199 382 54 8 1815 2183 725051096 725050716 1.820000e-82 316
5 TraesCS7B01G019600 chr7B 86.923 260 29 5 1767 2024 725150235 725149979 1.430000e-73 287
6 TraesCS7B01G019600 chr7B 91.954 174 13 1 1629 1801 682355291 682355118 3.130000e-60 243
7 TraesCS7B01G019600 chr7B 85.169 236 26 5 699 929 725152699 725152468 1.890000e-57 233
8 TraesCS7B01G019600 chr7B 78.899 327 35 20 1200 1514 682355616 682355312 1.150000e-44 191
9 TraesCS7B01G019600 chr7B 90.400 125 9 3 838 962 682355993 682355872 9.030000e-36 161
10 TraesCS7B01G019600 chr7B 88.393 112 9 2 161 272 725153730 725153623 7.080000e-27 132
11 TraesCS7B01G019600 chr7B 85.455 110 11 2 161 270 682364392 682364288 3.320000e-20 110
12 TraesCS7B01G019600 chr7B 91.250 80 3 1 2850 2929 725606603 725606678 4.290000e-19 106
13 TraesCS7B01G019600 chr7B 91.250 80 3 1 2850 2929 725642198 725642273 4.290000e-19 106
14 TraesCS7B01G019600 chrUn 88.924 1923 110 38 858 2726 332190423 332188550 0.000000e+00 2276
15 TraesCS7B01G019600 chrUn 84.924 524 59 12 160 680 87775046 87775552 2.160000e-141 512
16 TraesCS7B01G019600 chrUn 86.434 258 30 4 1767 2024 451868062 451867810 8.590000e-71 278
17 TraesCS7B01G019600 chrUn 85.169 236 26 5 699 929 213336782 213336551 1.890000e-57 233
18 TraesCS7B01G019600 chrUn 83.721 172 25 3 542 710 87775787 87775958 3.250000e-35 159
19 TraesCS7B01G019600 chrUn 92.929 99 7 0 60 158 87774911 87775009 9.090000e-31 145
20 TraesCS7B01G019600 chrUn 88.393 112 9 2 161 272 213337813 213337706 7.080000e-27 132
21 TraesCS7B01G019600 chrUn 88.393 112 9 2 161 272 438162937 438162830 7.080000e-27 132
22 TraesCS7B01G019600 chrUn 92.208 77 2 1 2853 2929 332188501 332188429 4.290000e-19 106
23 TraesCS7B01G019600 chr7D 85.033 1196 98 37 572 1729 625650109 625651261 0.000000e+00 1142
24 TraesCS7B01G019600 chr7D 84.358 537 42 16 1723 2236 625854551 625854034 3.650000e-134 488
25 TraesCS7B01G019600 chr7D 92.308 325 20 2 2608 2931 625652605 625652925 1.030000e-124 457
26 TraesCS7B01G019600 chr7D 81.625 517 56 23 1723 2233 625651435 625651918 2.940000e-105 392
27 TraesCS7B01G019600 chr7D 85.873 361 30 8 2580 2925 625853368 625853014 6.410000e-97 364
28 TraesCS7B01G019600 chr7D 87.986 283 29 4 648 929 625856035 625855757 2.340000e-86 329
29 TraesCS7B01G019600 chr7D 77.822 505 73 20 1000 1486 625855656 625855173 3.090000e-70 276
30 TraesCS7B01G019600 chr7D 82.648 219 19 8 643 860 625762872 625762672 3.220000e-40 176
31 TraesCS7B01G019600 chr7D 81.106 217 19 14 1527 1726 625855168 625854957 1.510000e-33 154
32 TraesCS7B01G019600 chr7D 88.235 102 9 1 161 262 625627069 625627167 5.510000e-23 119
33 TraesCS7B01G019600 chr7D 93.506 77 5 0 1410 1486 625610705 625610781 7.130000e-22 115
34 TraesCS7B01G019600 chr7A 82.677 1345 136 54 1000 2291 721222448 721223748 0.000000e+00 1103
35 TraesCS7B01G019600 chr7A 94.679 639 27 4 2295 2931 721228146 721228779 0.000000e+00 985
36 TraesCS7B01G019600 chr7A 82.932 498 36 13 2437 2931 721387066 721387517 1.360000e-108 403
37 TraesCS7B01G019600 chr7A 88.372 258 19 3 1985 2233 721381539 721381794 1.830000e-77 300
38 TraesCS7B01G019600 chr7A 94.512 164 9 0 2983 3146 112444710 112444547 1.450000e-63 254
39 TraesCS7B01G019600 chr7A 84.135 208 24 6 542 749 721222042 721222240 3.200000e-45 193
40 TraesCS7B01G019600 chr7A 93.182 88 6 0 813 900 721222239 721222326 2.550000e-26 130
41 TraesCS7B01G019600 chr7A 94.805 77 4 0 1410 1486 721205186 721205262 1.530000e-23 121
42 TraesCS7B01G019600 chr7A 90.000 90 8 1 2317 2405 721381797 721381886 7.130000e-22 115
43 TraesCS7B01G019600 chr7A 85.586 111 9 4 838 941 721374342 721374452 3.320000e-20 110
44 TraesCS7B01G019600 chr5B 94.512 164 9 0 2983 3146 243413810 243413973 1.450000e-63 254
45 TraesCS7B01G019600 chr5B 94.512 164 9 0 2983 3146 585504419 585504582 1.450000e-63 254
46 TraesCS7B01G019600 chr1B 94.512 164 9 0 2983 3146 659396368 659396205 1.450000e-63 254
47 TraesCS7B01G019600 chr1B 94.340 159 9 0 2983 3141 173608277 173608435 8.720000e-61 244
48 TraesCS7B01G019600 chr1B 90.698 86 6 2 2234 2317 543504394 543504309 2.560000e-21 113
49 TraesCS7B01G019600 chr6D 93.902 164 10 0 2983 3146 11682131 11681968 6.740000e-62 248
50 TraesCS7B01G019600 chr6D 88.172 93 9 2 2229 2319 48464497 48464589 3.320000e-20 110
51 TraesCS7B01G019600 chr3B 93.902 164 10 0 2983 3146 3808690 3808527 6.740000e-62 248
52 TraesCS7B01G019600 chr2D 93.902 164 10 0 2983 3146 533785920 533786083 6.740000e-62 248
53 TraesCS7B01G019600 chr2D 88.764 89 8 2 2232 2318 119819448 119819536 1.190000e-19 108
54 TraesCS7B01G019600 chr1D 93.293 164 11 0 2983 3146 438255943 438256106 3.130000e-60 243
55 TraesCS7B01G019600 chr3D 91.765 85 6 1 2234 2317 113802532 113802448 1.980000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G019600 chr7B 16832282 16835427 3145 False 5810.000000 5810 100.000000 1 3146 1 chr7B.!!$F1 3145
1 TraesCS7B01G019600 chr7B 725604684 725606678 1994 False 1196.500000 2287 90.139000 858 2929 2 chr7B.!!$F2 2071
2 TraesCS7B01G019600 chr7B 725640279 725642273 1994 False 1196.500000 2287 90.139000 858 2929 2 chr7B.!!$F3 2071
3 TraesCS7B01G019600 chr7B 682354059 682355993 1934 True 516.750000 1472 88.345000 838 2923 4 chr7B.!!$R3 2085
4 TraesCS7B01G019600 chr7B 725149979 725153730 3751 True 217.333333 287 86.828333 161 2024 3 chr7B.!!$R4 1863
5 TraesCS7B01G019600 chrUn 332188429 332190423 1994 True 1191.000000 2276 90.566000 858 2929 2 chrUn.!!$R4 2071
6 TraesCS7B01G019600 chrUn 87774911 87775958 1047 False 272.000000 512 87.191333 60 710 3 chrUn.!!$F1 650
7 TraesCS7B01G019600 chr7D 625650109 625652925 2816 False 663.666667 1142 86.322000 572 2931 3 chr7D.!!$F3 2359
8 TraesCS7B01G019600 chr7D 625853014 625856035 3021 True 322.200000 488 83.429000 648 2925 5 chr7D.!!$R2 2277
9 TraesCS7B01G019600 chr7A 721228146 721228779 633 False 985.000000 985 94.679000 2295 2931 1 chr7A.!!$F2 636
10 TraesCS7B01G019600 chr7A 721222042 721223748 1706 False 475.333333 1103 86.664667 542 2291 3 chr7A.!!$F5 1749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 339 0.095417 GATTCAAGTTCCGACGCTGC 59.905 55.0 0.0 0.0 0.0 5.25 F
710 1718 0.320073 CCGGAACCAACGTAGCAGAA 60.320 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1124 2200 0.039978 GTCGGCGTGATCGATGAGAT 60.040 55.0 0.54 0.0 43.51 2.75 R
2460 5451 0.466124 AGCTGGGAGATAAGCCGAAC 59.534 55.0 0.00 0.0 40.42 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.029809 GGCACCCTACCGTTGGCT 62.030 66.667 0.00 0.00 0.00 4.75
42 43 2.746277 GCACCCTACCGTTGGCTG 60.746 66.667 0.00 0.00 0.00 4.85
43 44 2.747686 CACCCTACCGTTGGCTGT 59.252 61.111 0.00 0.00 0.00 4.40
44 45 1.375523 CACCCTACCGTTGGCTGTC 60.376 63.158 0.00 0.00 0.00 3.51
45 46 2.267961 CCCTACCGTTGGCTGTCC 59.732 66.667 0.00 0.00 0.00 4.02
46 47 2.125673 CCTACCGTTGGCTGTCCG 60.126 66.667 0.00 0.00 34.14 4.79
47 48 2.654877 CTACCGTTGGCTGTCCGT 59.345 61.111 0.00 0.00 34.14 4.69
48 49 1.445582 CTACCGTTGGCTGTCCGTC 60.446 63.158 0.00 0.00 34.14 4.79
49 50 3.271706 TACCGTTGGCTGTCCGTCG 62.272 63.158 0.00 0.00 34.14 5.12
50 51 4.657824 CCGTTGGCTGTCCGTCGT 62.658 66.667 0.00 0.00 34.14 4.34
51 52 3.103911 CGTTGGCTGTCCGTCGTC 61.104 66.667 0.00 0.00 34.14 4.20
52 53 2.028484 GTTGGCTGTCCGTCGTCA 59.972 61.111 0.00 0.00 34.14 4.35
53 54 1.593209 GTTGGCTGTCCGTCGTCAA 60.593 57.895 0.00 0.00 34.14 3.18
54 55 1.300620 TTGGCTGTCCGTCGTCAAG 60.301 57.895 0.00 0.00 34.14 3.02
55 56 3.112709 GGCTGTCCGTCGTCAAGC 61.113 66.667 0.00 0.00 0.00 4.01
56 57 3.470567 GCTGTCCGTCGTCAAGCG 61.471 66.667 0.00 0.00 43.01 4.68
68 69 1.741401 TCAAGCGATTCCAGTGGCG 60.741 57.895 3.51 3.53 0.00 5.69
90 91 4.955774 GGTGAACGGTGCGACGGT 62.956 66.667 0.00 0.00 38.39 4.83
107 108 1.276421 CGGTGATGGAGTTCTCTTGGT 59.724 52.381 0.00 0.00 0.00 3.67
118 119 4.168101 AGTTCTCTTGGTTGGTAGATCCA 58.832 43.478 0.00 0.00 45.60 3.41
158 159 1.706995 TTGCCCTTCCGTACAACCCA 61.707 55.000 0.00 0.00 0.00 4.51
202 238 1.102154 CCATGTTGCAGCGGGAATTA 58.898 50.000 5.29 0.00 0.00 1.40
294 331 4.872691 ACATGATGAGACGATTCAAGTTCC 59.127 41.667 0.00 0.00 0.00 3.62
298 335 1.912110 GAGACGATTCAAGTTCCGACG 59.088 52.381 0.00 0.00 0.00 5.12
302 339 0.095417 GATTCAAGTTCCGACGCTGC 59.905 55.000 0.00 0.00 0.00 5.25
305 342 3.044305 AAGTTCCGACGCTGCTGC 61.044 61.111 5.34 5.34 0.00 5.25
329 429 9.153721 TGCTTGCATTTCCTTGATTTATTTTAG 57.846 29.630 0.00 0.00 0.00 1.85
339 439 7.829211 TCCTTGATTTATTTTAGTCCAGTCCTG 59.171 37.037 0.00 0.00 0.00 3.86
347 489 1.179814 AGTCCAGTCCTGTCGGTGAC 61.180 60.000 0.00 0.00 0.00 3.67
405 547 4.838486 GCGTCTCTGGCGACCTCG 62.838 72.222 0.00 0.00 43.27 4.63
417 559 1.413767 CGACCTCGGCAATCTCAACG 61.414 60.000 0.00 0.00 35.37 4.10
425 567 2.866156 CGGCAATCTCAACGTGATATGT 59.134 45.455 0.00 0.00 0.00 2.29
431 573 2.120232 CTCAACGTGATATGTCGGCTC 58.880 52.381 0.00 0.00 0.00 4.70
435 577 1.065701 ACGTGATATGTCGGCTCAGTC 59.934 52.381 0.00 0.00 0.00 3.51
436 578 1.335182 CGTGATATGTCGGCTCAGTCT 59.665 52.381 0.00 0.00 0.00 3.24
438 580 1.957177 TGATATGTCGGCTCAGTCTCC 59.043 52.381 0.00 0.00 0.00 3.71
439 581 1.271102 GATATGTCGGCTCAGTCTCCC 59.729 57.143 0.00 0.00 0.00 4.30
441 583 4.500116 GTCGGCTCAGTCTCCCGC 62.500 72.222 0.00 0.00 41.68 6.13
466 1098 4.502259 GGTGCTCTTAGTGATAGGATGTGG 60.502 50.000 0.00 0.00 0.00 4.17
473 1105 2.912956 AGTGATAGGATGTGGGTGTGTT 59.087 45.455 0.00 0.00 0.00 3.32
521 1153 2.723209 GTATGTACGAGTGCATGCGTA 58.277 47.619 14.09 16.71 41.49 4.42
552 1184 3.412386 AGAAAACAAGTTAGCTGGCGAT 58.588 40.909 0.00 0.00 0.00 4.58
586 1585 3.636043 AACACGCGCGTCACCTTG 61.636 61.111 35.61 23.20 0.00 3.61
592 1591 2.738521 CGCGTCACCTTGGAGTGG 60.739 66.667 0.00 0.00 38.34 4.00
595 1594 0.741221 GCGTCACCTTGGAGTGGATC 60.741 60.000 0.00 0.00 38.34 3.36
622 1621 2.082231 GCCAGACAGACTAGTACGTGA 58.918 52.381 0.00 0.00 0.00 4.35
623 1622 2.486982 GCCAGACAGACTAGTACGTGAA 59.513 50.000 0.00 0.00 0.00 3.18
625 1624 3.424565 CCAGACAGACTAGTACGTGAACG 60.425 52.174 0.00 0.40 46.33 3.95
694 1702 4.557695 CGAGAAGATCTTCACCTTATCCGG 60.558 50.000 31.79 10.88 41.84 5.14
710 1718 0.320073 CCGGAACCAACGTAGCAGAA 60.320 55.000 0.00 0.00 0.00 3.02
712 1720 2.073816 CGGAACCAACGTAGCAGAAAT 58.926 47.619 0.00 0.00 0.00 2.17
713 1721 3.255725 CGGAACCAACGTAGCAGAAATA 58.744 45.455 0.00 0.00 0.00 1.40
714 1722 3.680937 CGGAACCAACGTAGCAGAAATAA 59.319 43.478 0.00 0.00 0.00 1.40
715 1723 4.201685 CGGAACCAACGTAGCAGAAATAAG 60.202 45.833 0.00 0.00 0.00 1.73
716 1724 4.436986 GGAACCAACGTAGCAGAAATAAGC 60.437 45.833 0.00 0.00 0.00 3.09
717 1725 3.670625 ACCAACGTAGCAGAAATAAGCA 58.329 40.909 0.00 0.00 0.00 3.91
718 1726 3.684788 ACCAACGTAGCAGAAATAAGCAG 59.315 43.478 0.00 0.00 0.00 4.24
719 1727 3.932710 CCAACGTAGCAGAAATAAGCAGA 59.067 43.478 0.00 0.00 0.00 4.26
720 1728 4.201724 CCAACGTAGCAGAAATAAGCAGAC 60.202 45.833 0.00 0.00 0.00 3.51
721 1729 4.188247 ACGTAGCAGAAATAAGCAGACA 57.812 40.909 0.00 0.00 0.00 3.41
740 1748 4.346418 AGACACTGGAATGGATATGTCTCC 59.654 45.833 0.00 0.00 42.29 3.71
767 1778 2.319844 TGGAGTCAGTCACAGTCATGT 58.680 47.619 0.00 0.00 41.57 3.21
815 1826 3.695606 GAGGCGAGGACAGGTGCA 61.696 66.667 0.00 0.00 0.00 4.57
828 1839 4.996434 GTGCAGCGTCCCAGCAGT 62.996 66.667 0.00 0.00 39.21 4.40
834 1845 2.738521 CGTCCCAGCAGTCAACCG 60.739 66.667 0.00 0.00 0.00 4.44
926 1941 1.597742 AATCGGCGCTTAATCTGCAT 58.402 45.000 7.64 0.00 0.00 3.96
929 1944 1.490693 CGGCGCTTAATCTGCATCGT 61.491 55.000 7.64 0.00 0.00 3.73
933 1948 2.398498 CGCTTAATCTGCATCGTAGCT 58.602 47.619 0.00 0.00 34.99 3.32
934 1949 3.565516 CGCTTAATCTGCATCGTAGCTA 58.434 45.455 0.00 0.00 34.99 3.32
935 1950 3.605916 CGCTTAATCTGCATCGTAGCTAG 59.394 47.826 0.00 0.00 34.99 3.42
970 2012 3.319137 TGAACTCATCGTCCCAAGAAG 57.681 47.619 0.00 0.00 0.00 2.85
1013 2081 2.705658 TGGAGATAATGGCATCCGAGTT 59.294 45.455 0.00 0.00 34.39 3.01
1124 2200 3.130340 GGCCTTTTTCCTTGCGATATTCA 59.870 43.478 0.00 0.00 0.00 2.57
1245 2328 4.459089 GAGGGCGGTCTCAGTGGC 62.459 72.222 0.00 0.00 34.13 5.01
1281 2370 1.982395 CCGGCTCAGTCAGGTACCA 60.982 63.158 15.94 0.00 0.00 3.25
1538 3329 3.100503 GCTCTGCTGCCCCTCTACC 62.101 68.421 0.00 0.00 0.00 3.18
1564 3361 6.971602 TGTACTACTCTGTTCTCTCAACTTG 58.028 40.000 0.00 0.00 0.00 3.16
1642 3456 4.784329 CATCATTCGATCAGATTTGCTGG 58.216 43.478 0.00 0.00 44.98 4.85
1812 4751 0.601046 ATCGTACGCATGCCCTGATG 60.601 55.000 13.15 0.00 0.00 3.07
1813 4752 2.246739 CGTACGCATGCCCTGATGG 61.247 63.158 13.15 0.00 37.09 3.51
1830 4769 5.182380 CCTGATGGCCTAACGTTTTCTTTTA 59.818 40.000 5.91 0.00 0.00 1.52
1833 4772 7.309920 TGATGGCCTAACGTTTTCTTTTATTC 58.690 34.615 5.91 0.00 0.00 1.75
1844 4783 7.648112 ACGTTTTCTTTTATTCCTTCTTTCAGC 59.352 33.333 0.00 0.00 0.00 4.26
1920 4860 1.500108 GCAAGAGATCTCTCATGGCG 58.500 55.000 25.29 10.85 45.21 5.69
1939 4879 2.977178 CAGCCGAACTCTGCTCCT 59.023 61.111 0.00 0.00 34.12 3.69
1972 4912 9.877178 GCATAAATACTAGCACTACCATATCTT 57.123 33.333 0.00 0.00 0.00 2.40
1976 4926 9.988815 AAATACTAGCACTACCATATCTTTCTG 57.011 33.333 0.00 0.00 0.00 3.02
1979 4929 5.283457 AGCACTACCATATCTTTCTGTCC 57.717 43.478 0.00 0.00 0.00 4.02
1980 4930 4.965532 AGCACTACCATATCTTTCTGTCCT 59.034 41.667 0.00 0.00 0.00 3.85
1981 4931 6.136857 AGCACTACCATATCTTTCTGTCCTA 58.863 40.000 0.00 0.00 0.00 2.94
1983 4933 6.439599 CACTACCATATCTTTCTGTCCTACG 58.560 44.000 0.00 0.00 0.00 3.51
2008 4962 1.613925 TCTCACCATCGGTAGCTATGC 59.386 52.381 0.00 0.00 32.11 3.14
2249 5229 3.210232 TGATCTACTCCTCCGTACCAG 57.790 52.381 0.00 0.00 0.00 4.00
2269 5249 4.446371 CAGAATACTTGTAGCTGGGGAAG 58.554 47.826 0.00 0.00 0.00 3.46
2306 5286 5.397109 CCCCCAACTACAAGTATTTCGGTAT 60.397 44.000 0.00 0.00 0.00 2.73
2389 5370 3.074687 TCCTGTAAACTGGCCCATTACAA 59.925 43.478 19.50 8.66 38.61 2.41
2398 5379 4.835615 ACTGGCCCATTACAAAATAACACA 59.164 37.500 0.00 0.00 0.00 3.72
2405 5386 7.042791 GCCCATTACAAAATAACACATGTATGC 60.043 37.037 0.00 0.00 0.00 3.14
2477 5794 0.744874 TCGTTCGGCTTATCTCCCAG 59.255 55.000 0.00 0.00 0.00 4.45
2549 5866 1.812571 CACAAGAACAGGGCATACACC 59.187 52.381 0.00 0.00 0.00 4.16
2670 6615 4.881273 TCAGAAATATGGAACGGAATGTGG 59.119 41.667 0.00 0.00 0.00 4.17
2908 6868 8.518430 ACAACTACAATGGAATATAACATGCA 57.482 30.769 0.00 0.00 0.00 3.96
2909 6869 9.135189 ACAACTACAATGGAATATAACATGCAT 57.865 29.630 0.00 0.00 0.00 3.96
2910 6870 9.401873 CAACTACAATGGAATATAACATGCATG 57.598 33.333 25.09 25.09 0.00 4.06
2911 6871 8.114331 ACTACAATGGAATATAACATGCATGG 57.886 34.615 29.41 12.50 0.00 3.66
2937 6897 9.798994 GTTACAAATATATACATACTCCCTCCG 57.201 37.037 0.00 0.00 0.00 4.63
2938 6898 9.537852 TTACAAATATATACATACTCCCTCCGT 57.462 33.333 0.00 0.00 0.00 4.69
2939 6899 8.064336 ACAAATATATACATACTCCCTCCGTC 57.936 38.462 0.00 0.00 0.00 4.79
2940 6900 7.123847 ACAAATATATACATACTCCCTCCGTCC 59.876 40.741 0.00 0.00 0.00 4.79
2941 6901 1.906990 ATACATACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
2942 6902 0.820891 TACATACTCCCTCCGTCCGC 60.821 60.000 0.00 0.00 0.00 5.54
2943 6903 1.828660 CATACTCCCTCCGTCCGCT 60.829 63.158 0.00 0.00 0.00 5.52
2944 6904 0.536687 CATACTCCCTCCGTCCGCTA 60.537 60.000 0.00 0.00 0.00 4.26
2945 6905 0.184451 ATACTCCCTCCGTCCGCTAA 59.816 55.000 0.00 0.00 0.00 3.09
2946 6906 0.184451 TACTCCCTCCGTCCGCTAAT 59.816 55.000 0.00 0.00 0.00 1.73
2947 6907 0.184451 ACTCCCTCCGTCCGCTAATA 59.816 55.000 0.00 0.00 0.00 0.98
2948 6908 0.597072 CTCCCTCCGTCCGCTAATAC 59.403 60.000 0.00 0.00 0.00 1.89
2949 6909 0.184451 TCCCTCCGTCCGCTAATACT 59.816 55.000 0.00 0.00 0.00 2.12
2950 6910 1.038280 CCCTCCGTCCGCTAATACTT 58.962 55.000 0.00 0.00 0.00 2.24
2951 6911 2.158623 TCCCTCCGTCCGCTAATACTTA 60.159 50.000 0.00 0.00 0.00 2.24
2952 6912 2.824341 CCCTCCGTCCGCTAATACTTAT 59.176 50.000 0.00 0.00 0.00 1.73
2953 6913 3.119566 CCCTCCGTCCGCTAATACTTATC 60.120 52.174 0.00 0.00 0.00 1.75
2954 6914 3.504906 CCTCCGTCCGCTAATACTTATCA 59.495 47.826 0.00 0.00 0.00 2.15
2955 6915 4.158025 CCTCCGTCCGCTAATACTTATCAT 59.842 45.833 0.00 0.00 0.00 2.45
2956 6916 5.306532 TCCGTCCGCTAATACTTATCATC 57.693 43.478 0.00 0.00 0.00 2.92
2957 6917 4.763279 TCCGTCCGCTAATACTTATCATCA 59.237 41.667 0.00 0.00 0.00 3.07
2958 6918 5.242171 TCCGTCCGCTAATACTTATCATCAA 59.758 40.000 0.00 0.00 0.00 2.57
2959 6919 5.924254 CCGTCCGCTAATACTTATCATCAAA 59.076 40.000 0.00 0.00 0.00 2.69
2960 6920 6.422701 CCGTCCGCTAATACTTATCATCAAAA 59.577 38.462 0.00 0.00 0.00 2.44
2961 6921 7.117812 CCGTCCGCTAATACTTATCATCAAAAT 59.882 37.037 0.00 0.00 0.00 1.82
2962 6922 7.952101 CGTCCGCTAATACTTATCATCAAAATG 59.048 37.037 0.00 0.00 0.00 2.32
2963 6923 8.230486 GTCCGCTAATACTTATCATCAAAATGG 58.770 37.037 0.00 0.00 33.42 3.16
2964 6924 8.154203 TCCGCTAATACTTATCATCAAAATGGA 58.846 33.333 0.00 0.00 33.42 3.41
2965 6925 8.950210 CCGCTAATACTTATCATCAAAATGGAT 58.050 33.333 0.00 0.00 33.42 3.41
2989 6949 2.225068 AAAGATGTATCTGTCGCCGG 57.775 50.000 0.00 0.00 37.19 6.13
2990 6950 1.399714 AAGATGTATCTGTCGCCGGA 58.600 50.000 5.05 0.00 37.19 5.14
2991 6951 1.621992 AGATGTATCTGTCGCCGGAT 58.378 50.000 5.05 0.00 39.97 4.18
2992 6952 1.542030 AGATGTATCTGTCGCCGGATC 59.458 52.381 5.05 0.00 37.81 3.36
2993 6953 1.542030 GATGTATCTGTCGCCGGATCT 59.458 52.381 5.05 0.00 37.81 2.75
2994 6954 2.265589 TGTATCTGTCGCCGGATCTA 57.734 50.000 5.05 0.00 37.81 1.98
2995 6955 2.152016 TGTATCTGTCGCCGGATCTAG 58.848 52.381 5.05 0.00 37.81 2.43
2996 6956 1.469308 GTATCTGTCGCCGGATCTAGG 59.531 57.143 5.05 3.81 37.81 3.02
3002 6962 2.989824 GCCGGATCTAGGCGGCTA 60.990 66.667 21.38 18.65 45.58 3.93
3003 6963 2.995872 GCCGGATCTAGGCGGCTAG 61.996 68.421 33.84 33.84 45.58 3.42
3004 6964 1.303398 CCGGATCTAGGCGGCTAGA 60.303 63.158 40.33 40.33 39.87 2.43
3005 6965 0.681564 CCGGATCTAGGCGGCTAGAT 60.682 60.000 44.29 44.29 46.06 1.98
3009 6969 1.846007 ATCTAGGCGGCTAGATCTGG 58.154 55.000 40.79 21.28 41.35 3.86
3010 6970 0.771755 TCTAGGCGGCTAGATCTGGA 59.228 55.000 36.84 19.54 31.64 3.86
3011 6971 1.173043 CTAGGCGGCTAGATCTGGAG 58.827 60.000 35.67 13.18 0.00 3.86
3012 6972 0.896019 TAGGCGGCTAGATCTGGAGC 60.896 60.000 15.70 13.50 38.00 4.70
3013 6973 2.206536 GGCGGCTAGATCTGGAGCT 61.207 63.158 20.25 0.00 38.79 4.09
3014 6974 1.745264 GCGGCTAGATCTGGAGCTT 59.255 57.895 15.44 0.00 38.79 3.74
3015 6975 0.105778 GCGGCTAGATCTGGAGCTTT 59.894 55.000 15.44 0.00 38.79 3.51
3016 6976 1.863267 CGGCTAGATCTGGAGCTTTG 58.137 55.000 15.44 4.59 38.79 2.77
3017 6977 1.410517 CGGCTAGATCTGGAGCTTTGA 59.589 52.381 15.44 0.00 38.79 2.69
3018 6978 2.159043 CGGCTAGATCTGGAGCTTTGAA 60.159 50.000 15.44 0.00 38.79 2.69
3019 6979 3.465871 GGCTAGATCTGGAGCTTTGAAG 58.534 50.000 15.44 0.00 38.79 3.02
3020 6980 3.465871 GCTAGATCTGGAGCTTTGAAGG 58.534 50.000 10.75 0.00 35.73 3.46
3021 6981 3.118445 GCTAGATCTGGAGCTTTGAAGGT 60.118 47.826 10.75 0.00 39.89 3.50
3022 6982 3.347077 AGATCTGGAGCTTTGAAGGTG 57.653 47.619 0.00 0.00 36.78 4.00
3023 6983 2.026449 AGATCTGGAGCTTTGAAGGTGG 60.026 50.000 0.00 0.00 36.78 4.61
3024 6984 1.140312 TCTGGAGCTTTGAAGGTGGT 58.860 50.000 0.00 0.00 36.78 4.16
3025 6985 1.072331 TCTGGAGCTTTGAAGGTGGTC 59.928 52.381 0.00 0.00 36.78 4.02
3026 6986 0.250295 TGGAGCTTTGAAGGTGGTCG 60.250 55.000 0.00 0.00 36.78 4.79
3027 6987 0.034896 GGAGCTTTGAAGGTGGTCGA 59.965 55.000 0.00 0.00 36.78 4.20
3028 6988 1.433534 GAGCTTTGAAGGTGGTCGAG 58.566 55.000 0.00 0.00 36.78 4.04
3029 6989 1.000955 GAGCTTTGAAGGTGGTCGAGA 59.999 52.381 0.00 0.00 36.78 4.04
3030 6990 1.625818 AGCTTTGAAGGTGGTCGAGAT 59.374 47.619 0.00 0.00 35.05 2.75
3031 6991 2.832129 AGCTTTGAAGGTGGTCGAGATA 59.168 45.455 0.00 0.00 35.05 1.98
3032 6992 3.118956 AGCTTTGAAGGTGGTCGAGATAG 60.119 47.826 0.00 0.00 35.05 2.08
3033 6993 3.368531 GCTTTGAAGGTGGTCGAGATAGT 60.369 47.826 0.00 0.00 0.00 2.12
3034 6994 3.868757 TTGAAGGTGGTCGAGATAGTG 57.131 47.619 0.00 0.00 0.00 2.74
3035 6995 1.476891 TGAAGGTGGTCGAGATAGTGC 59.523 52.381 0.00 0.00 0.00 4.40
3036 6996 1.476891 GAAGGTGGTCGAGATAGTGCA 59.523 52.381 0.00 0.00 0.00 4.57
3037 6997 0.818296 AGGTGGTCGAGATAGTGCAC 59.182 55.000 9.40 9.40 0.00 4.57
3038 6998 0.530744 GGTGGTCGAGATAGTGCACA 59.469 55.000 21.04 5.47 0.00 4.57
3039 6999 1.067142 GGTGGTCGAGATAGTGCACAA 60.067 52.381 21.04 0.00 0.00 3.33
3040 7000 2.263077 GTGGTCGAGATAGTGCACAAG 58.737 52.381 21.04 3.36 0.00 3.16
3041 7001 1.893137 TGGTCGAGATAGTGCACAAGT 59.107 47.619 21.04 3.73 0.00 3.16
3042 7002 2.299013 TGGTCGAGATAGTGCACAAGTT 59.701 45.455 21.04 0.00 0.00 2.66
3043 7003 2.668457 GGTCGAGATAGTGCACAAGTTG 59.332 50.000 21.04 0.00 0.00 3.16
3044 7004 3.318017 GTCGAGATAGTGCACAAGTTGT 58.682 45.455 21.04 1.64 0.00 3.32
3045 7005 3.365220 GTCGAGATAGTGCACAAGTTGTC 59.635 47.826 21.04 6.03 0.00 3.18
3046 7006 2.342651 CGAGATAGTGCACAAGTTGTCG 59.657 50.000 21.04 15.07 0.00 4.35
3047 7007 2.668457 GAGATAGTGCACAAGTTGTCGG 59.332 50.000 21.04 0.00 0.00 4.79
3048 7008 1.732259 GATAGTGCACAAGTTGTCGGG 59.268 52.381 21.04 0.00 0.00 5.14
3049 7009 0.466543 TAGTGCACAAGTTGTCGGGT 59.533 50.000 21.04 0.00 0.00 5.28
3050 7010 1.095228 AGTGCACAAGTTGTCGGGTG 61.095 55.000 21.04 0.00 0.00 4.61
3051 7011 1.821759 TGCACAAGTTGTCGGGTGG 60.822 57.895 5.27 0.00 0.00 4.61
3052 7012 1.525077 GCACAAGTTGTCGGGTGGA 60.525 57.895 5.27 0.00 0.00 4.02
3053 7013 0.889186 GCACAAGTTGTCGGGTGGAT 60.889 55.000 5.27 0.00 0.00 3.41
3054 7014 1.604604 CACAAGTTGTCGGGTGGATT 58.395 50.000 5.27 0.00 0.00 3.01
3055 7015 1.953686 CACAAGTTGTCGGGTGGATTT 59.046 47.619 5.27 0.00 0.00 2.17
3056 7016 2.031157 CACAAGTTGTCGGGTGGATTTC 60.031 50.000 5.27 0.00 0.00 2.17
3057 7017 2.158667 ACAAGTTGTCGGGTGGATTTCT 60.159 45.455 1.64 0.00 0.00 2.52
3058 7018 2.884639 CAAGTTGTCGGGTGGATTTCTT 59.115 45.455 0.00 0.00 0.00 2.52
3059 7019 2.504367 AGTTGTCGGGTGGATTTCTTG 58.496 47.619 0.00 0.00 0.00 3.02
3060 7020 1.539827 GTTGTCGGGTGGATTTCTTGG 59.460 52.381 0.00 0.00 0.00 3.61
3061 7021 0.037590 TGTCGGGTGGATTTCTTGGG 59.962 55.000 0.00 0.00 0.00 4.12
3062 7022 0.326927 GTCGGGTGGATTTCTTGGGA 59.673 55.000 0.00 0.00 0.00 4.37
3063 7023 1.064685 GTCGGGTGGATTTCTTGGGAT 60.065 52.381 0.00 0.00 0.00 3.85
3064 7024 1.064758 TCGGGTGGATTTCTTGGGATG 60.065 52.381 0.00 0.00 0.00 3.51
3065 7025 1.780503 GGGTGGATTTCTTGGGATGG 58.219 55.000 0.00 0.00 0.00 3.51
3066 7026 1.287739 GGGTGGATTTCTTGGGATGGA 59.712 52.381 0.00 0.00 0.00 3.41
3067 7027 2.091111 GGGTGGATTTCTTGGGATGGAT 60.091 50.000 0.00 0.00 0.00 3.41
3068 7028 3.225940 GGTGGATTTCTTGGGATGGATC 58.774 50.000 0.00 0.00 0.00 3.36
3069 7029 3.225940 GTGGATTTCTTGGGATGGATCC 58.774 50.000 4.20 4.20 46.41 3.36
3079 7039 1.954927 GGATGGATCCGAGTGAAACC 58.045 55.000 7.39 0.00 35.38 3.27
3080 7040 1.486726 GGATGGATCCGAGTGAAACCT 59.513 52.381 7.39 0.00 35.38 3.50
3081 7041 2.092914 GGATGGATCCGAGTGAAACCTT 60.093 50.000 7.39 0.00 35.38 3.50
3082 7042 2.472695 TGGATCCGAGTGAAACCTTG 57.527 50.000 7.39 0.00 37.80 3.61
3083 7043 1.003118 TGGATCCGAGTGAAACCTTGG 59.997 52.381 7.39 0.00 37.80 3.61
3084 7044 1.003233 GGATCCGAGTGAAACCTTGGT 59.997 52.381 0.00 0.00 37.80 3.67
3085 7045 2.347731 GATCCGAGTGAAACCTTGGTC 58.652 52.381 0.00 0.00 37.80 4.02
3086 7046 1.420430 TCCGAGTGAAACCTTGGTCT 58.580 50.000 0.00 0.00 37.80 3.85
3087 7047 1.766496 TCCGAGTGAAACCTTGGTCTT 59.234 47.619 0.00 0.00 37.80 3.01
3088 7048 2.143925 CCGAGTGAAACCTTGGTCTTC 58.856 52.381 0.00 1.08 37.80 2.87
3089 7049 1.792949 CGAGTGAAACCTTGGTCTTCG 59.207 52.381 0.00 0.00 37.80 3.79
3090 7050 2.143925 GAGTGAAACCTTGGTCTTCGG 58.856 52.381 0.00 0.00 37.80 4.30
3091 7051 1.489230 AGTGAAACCTTGGTCTTCGGT 59.511 47.619 0.00 0.00 37.80 4.69
3092 7052 1.871676 GTGAAACCTTGGTCTTCGGTC 59.128 52.381 0.00 0.00 0.00 4.79
3093 7053 1.766496 TGAAACCTTGGTCTTCGGTCT 59.234 47.619 0.00 0.00 0.00 3.85
3094 7054 2.171870 TGAAACCTTGGTCTTCGGTCTT 59.828 45.455 0.00 0.00 0.00 3.01
3095 7055 3.211865 GAAACCTTGGTCTTCGGTCTTT 58.788 45.455 0.00 0.00 0.00 2.52
3096 7056 2.256117 ACCTTGGTCTTCGGTCTTTG 57.744 50.000 0.00 0.00 0.00 2.77
3097 7057 1.202770 ACCTTGGTCTTCGGTCTTTGG 60.203 52.381 0.00 0.00 0.00 3.28
3098 7058 0.875059 CTTGGTCTTCGGTCTTTGGC 59.125 55.000 0.00 0.00 0.00 4.52
3099 7059 0.536460 TTGGTCTTCGGTCTTTGGCC 60.536 55.000 0.00 0.00 0.00 5.36
3105 7065 3.053896 CGGTCTTTGGCCGGAACC 61.054 66.667 5.05 0.00 44.98 3.62
3106 7066 3.053896 GGTCTTTGGCCGGAACCG 61.054 66.667 5.05 6.25 39.44 4.44
3116 7076 2.569657 CGGAACCGGTGATGACGA 59.430 61.111 8.52 0.00 35.56 4.20
3117 7077 1.141019 CGGAACCGGTGATGACGAT 59.859 57.895 8.52 0.00 35.56 3.73
3118 7078 1.145759 CGGAACCGGTGATGACGATG 61.146 60.000 8.52 0.00 35.56 3.84
3119 7079 1.429148 GGAACCGGTGATGACGATGC 61.429 60.000 8.52 0.00 0.00 3.91
3120 7080 1.429148 GAACCGGTGATGACGATGCC 61.429 60.000 8.52 0.00 0.00 4.40
3121 7081 2.588877 CCGGTGATGACGATGCCC 60.589 66.667 0.00 0.00 0.00 5.36
3122 7082 2.501128 CGGTGATGACGATGCCCT 59.499 61.111 0.00 0.00 0.00 5.19
3123 7083 1.153369 CGGTGATGACGATGCCCTT 60.153 57.895 0.00 0.00 0.00 3.95
3124 7084 0.104120 CGGTGATGACGATGCCCTTA 59.896 55.000 0.00 0.00 0.00 2.69
3125 7085 1.270305 CGGTGATGACGATGCCCTTAT 60.270 52.381 0.00 0.00 0.00 1.73
3126 7086 2.417719 GGTGATGACGATGCCCTTATC 58.582 52.381 0.00 0.00 0.00 1.75
3127 7087 2.224281 GGTGATGACGATGCCCTTATCA 60.224 50.000 0.00 0.00 0.00 2.15
3128 7088 3.557898 GGTGATGACGATGCCCTTATCAT 60.558 47.826 0.00 0.00 32.74 2.45
3129 7089 3.681897 GTGATGACGATGCCCTTATCATC 59.318 47.826 5.74 5.74 43.88 2.92
3136 7096 3.744660 GATGCCCTTATCATCGTTTCCT 58.255 45.455 0.00 0.00 32.14 3.36
3137 7097 3.644966 TGCCCTTATCATCGTTTCCTT 57.355 42.857 0.00 0.00 0.00 3.36
3138 7098 3.541632 TGCCCTTATCATCGTTTCCTTC 58.458 45.455 0.00 0.00 0.00 3.46
3139 7099 3.054728 TGCCCTTATCATCGTTTCCTTCA 60.055 43.478 0.00 0.00 0.00 3.02
3140 7100 4.137543 GCCCTTATCATCGTTTCCTTCAT 58.862 43.478 0.00 0.00 0.00 2.57
3141 7101 5.163248 TGCCCTTATCATCGTTTCCTTCATA 60.163 40.000 0.00 0.00 0.00 2.15
3142 7102 5.763204 GCCCTTATCATCGTTTCCTTCATAA 59.237 40.000 0.00 0.00 0.00 1.90
3143 7103 6.262273 GCCCTTATCATCGTTTCCTTCATAAA 59.738 38.462 0.00 0.00 0.00 1.40
3144 7104 7.520614 GCCCTTATCATCGTTTCCTTCATAAAG 60.521 40.741 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.419921 CCAACGGTAGGGTGCCCC 62.420 72.222 3.17 2.16 45.90 5.80
24 25 4.029809 AGCCAACGGTAGGGTGCC 62.030 66.667 0.00 0.00 35.13 5.01
25 26 2.746277 CAGCCAACGGTAGGGTGC 60.746 66.667 7.94 0.00 46.26 5.01
27 28 2.590114 GGACAGCCAACGGTAGGGT 61.590 63.158 0.00 0.00 37.34 4.34
28 29 2.267961 GGACAGCCAACGGTAGGG 59.732 66.667 0.00 0.00 0.00 3.53
29 30 2.125673 CGGACAGCCAACGGTAGG 60.126 66.667 0.00 0.00 0.00 3.18
30 31 1.445582 GACGGACAGCCAACGGTAG 60.446 63.158 0.00 0.00 0.00 3.18
31 32 2.652530 GACGGACAGCCAACGGTA 59.347 61.111 0.00 0.00 0.00 4.02
32 33 4.657824 CGACGGACAGCCAACGGT 62.658 66.667 0.00 0.00 0.00 4.83
33 34 4.657824 ACGACGGACAGCCAACGG 62.658 66.667 0.00 0.00 36.92 4.44
34 35 3.103911 GACGACGGACAGCCAACG 61.104 66.667 0.00 0.00 38.00 4.10
35 36 1.557443 CTTGACGACGGACAGCCAAC 61.557 60.000 0.00 0.00 0.00 3.77
36 37 1.300620 CTTGACGACGGACAGCCAA 60.301 57.895 0.00 0.00 0.00 4.52
37 38 2.338620 CTTGACGACGGACAGCCA 59.661 61.111 0.00 0.00 0.00 4.75
38 39 3.112709 GCTTGACGACGGACAGCC 61.113 66.667 0.00 0.00 0.00 4.85
48 49 1.970917 GCCACTGGAATCGCTTGACG 61.971 60.000 0.00 0.00 45.62 4.35
49 50 1.796796 GCCACTGGAATCGCTTGAC 59.203 57.895 0.00 0.00 0.00 3.18
50 51 1.741401 CGCCACTGGAATCGCTTGA 60.741 57.895 0.00 0.00 0.00 3.02
51 52 2.753966 CCGCCACTGGAATCGCTTG 61.754 63.158 0.00 0.00 0.00 4.01
52 53 2.436646 CCGCCACTGGAATCGCTT 60.437 61.111 0.00 0.00 0.00 4.68
74 75 3.698463 CACCGTCGCACCGTTCAC 61.698 66.667 0.00 0.00 0.00 3.18
79 80 4.429212 TCCATCACCGTCGCACCG 62.429 66.667 0.00 0.00 0.00 4.94
90 91 2.711009 ACCAACCAAGAGAACTCCATCA 59.289 45.455 0.00 0.00 0.00 3.07
118 119 3.386543 CCGGAGGCGATCAGAATTT 57.613 52.632 0.00 0.00 46.14 1.82
158 159 7.310052 GGGAGGCATCTTTCTAGTTTTCAAAAT 60.310 37.037 0.00 0.00 0.00 1.82
239 276 8.036273 TGCTATACAGTAAAAGGCTTTTGTAC 57.964 34.615 30.27 22.23 34.19 2.90
241 278 7.519032 TTGCTATACAGTAAAAGGCTTTTGT 57.481 32.000 30.27 23.37 34.19 2.83
262 299 9.305925 TGAATCGTCTCATCATGTATATATTGC 57.694 33.333 0.00 0.00 0.00 3.56
274 311 3.192633 TCGGAACTTGAATCGTCTCATCA 59.807 43.478 0.00 0.00 0.00 3.07
282 319 0.366871 CAGCGTCGGAACTTGAATCG 59.633 55.000 0.00 0.00 0.00 3.34
302 339 7.605410 AAATAAATCAAGGAAATGCAAGCAG 57.395 32.000 0.00 0.00 0.00 4.24
312 349 8.390921 AGGACTGGACTAAAATAAATCAAGGAA 58.609 33.333 0.00 0.00 0.00 3.36
329 429 1.289380 GTCACCGACAGGACTGGAC 59.711 63.158 4.14 0.00 41.02 4.02
331 431 2.258591 CGTCACCGACAGGACTGG 59.741 66.667 4.14 0.00 41.02 4.00
339 439 3.307782 CCCATTAAATACACGTCACCGAC 59.692 47.826 0.00 0.00 37.88 4.79
347 489 7.553881 AATGTCTCTTCCCATTAAATACACG 57.446 36.000 0.00 0.00 29.78 4.49
396 538 2.586357 GAGATTGCCGAGGTCGCC 60.586 66.667 0.00 0.00 38.18 5.54
405 547 3.060272 CGACATATCACGTTGAGATTGCC 60.060 47.826 0.00 0.00 0.00 4.52
417 559 2.287909 GGAGACTGAGCCGACATATCAC 60.288 54.545 0.00 0.00 0.00 3.06
425 567 4.742649 AGCGGGAGACTGAGCCGA 62.743 66.667 0.00 0.00 39.98 5.54
441 583 4.343526 ACATCCTATCACTAAGAGCACCAG 59.656 45.833 0.00 0.00 0.00 4.00
479 1111 9.616634 CATACGTATGTATACACTCGGTTTTAT 57.383 33.333 24.46 15.44 39.28 1.40
480 1112 8.620416 ACATACGTATGTATACACTCGGTTTTA 58.380 33.333 34.01 14.36 44.54 1.52
481 1113 7.483307 ACATACGTATGTATACACTCGGTTTT 58.517 34.615 34.01 8.61 44.54 2.43
482 1114 7.031226 ACATACGTATGTATACACTCGGTTT 57.969 36.000 34.01 9.23 44.54 3.27
483 1115 6.624352 ACATACGTATGTATACACTCGGTT 57.376 37.500 34.01 9.64 44.54 4.44
540 1172 0.102481 TTCCTCGATCGCCAGCTAAC 59.898 55.000 11.09 0.00 0.00 2.34
552 1184 3.289704 TTGCATCGCCGTTCCTCGA 62.290 57.895 0.00 0.00 42.86 4.04
586 1585 1.274703 TGGCCTCTTGGATCCACTCC 61.275 60.000 15.91 11.48 45.19 3.85
592 1591 1.134551 GTCTGTCTGGCCTCTTGGATC 60.135 57.143 3.32 0.00 34.57 3.36
595 1594 1.480137 CTAGTCTGTCTGGCCTCTTGG 59.520 57.143 3.32 0.00 0.00 3.61
602 1601 2.082231 TCACGTACTAGTCTGTCTGGC 58.918 52.381 0.00 0.00 0.00 4.85
625 1624 0.458669 ACGTATGGGACCACGATCAC 59.541 55.000 9.61 0.00 38.77 3.06
626 1625 0.458260 CACGTATGGGACCACGATCA 59.542 55.000 9.61 0.00 38.77 2.92
635 1634 3.295973 TCATCTCATCACACGTATGGGA 58.704 45.455 1.95 1.95 44.30 4.37
694 1702 4.153475 TGCTTATTTCTGCTACGTTGGTTC 59.847 41.667 0.00 0.00 0.00 3.62
710 1718 4.574674 TCCATTCCAGTGTCTGCTTATT 57.425 40.909 0.00 0.00 0.00 1.40
712 1720 5.130975 ACATATCCATTCCAGTGTCTGCTTA 59.869 40.000 0.00 0.00 0.00 3.09
713 1721 4.080129 ACATATCCATTCCAGTGTCTGCTT 60.080 41.667 0.00 0.00 0.00 3.91
714 1722 3.457380 ACATATCCATTCCAGTGTCTGCT 59.543 43.478 0.00 0.00 0.00 4.24
715 1723 3.812053 GACATATCCATTCCAGTGTCTGC 59.188 47.826 0.00 0.00 34.63 4.26
716 1724 5.287674 AGACATATCCATTCCAGTGTCTG 57.712 43.478 5.15 0.00 43.15 3.51
717 1725 4.346418 GGAGACATATCCATTCCAGTGTCT 59.654 45.833 5.60 5.60 46.26 3.41
718 1726 4.101585 TGGAGACATATCCATTCCAGTGTC 59.898 45.833 0.00 0.00 44.56 3.67
719 1727 4.040047 TGGAGACATATCCATTCCAGTGT 58.960 43.478 0.00 0.00 44.56 3.55
720 1728 4.694760 TGGAGACATATCCATTCCAGTG 57.305 45.455 0.00 0.00 44.56 3.66
740 1748 1.541588 TGTGACTGACTCCATCGACTG 59.458 52.381 0.00 0.00 0.00 3.51
744 1752 1.541588 TGACTGTGACTGACTCCATCG 59.458 52.381 0.00 0.00 0.00 3.84
767 1778 0.548031 AGGGTAGGATCCGACGTACA 59.452 55.000 17.58 0.00 34.24 2.90
815 1826 2.031163 GTTGACTGCTGGGACGCT 59.969 61.111 0.00 0.00 0.00 5.07
826 1837 1.604693 GGTTCATGACGACGGTTGACT 60.605 52.381 1.53 0.00 0.00 3.41
828 1839 0.389757 TGGTTCATGACGACGGTTGA 59.610 50.000 1.53 0.00 0.00 3.18
834 1845 4.678509 TTTATGCTTGGTTCATGACGAC 57.321 40.909 0.00 0.00 0.00 4.34
911 1926 1.457303 CTACGATGCAGATTAAGCGCC 59.543 52.381 2.29 0.00 33.85 6.53
926 1941 9.623000 TCAAGCCAATATATATACTAGCTACGA 57.377 33.333 10.88 8.84 0.00 3.43
934 1949 9.809096 CGATGAGTTCAAGCCAATATATATACT 57.191 33.333 0.00 0.00 0.00 2.12
935 1950 9.587772 ACGATGAGTTCAAGCCAATATATATAC 57.412 33.333 0.00 0.00 0.00 1.47
946 1961 0.036388 TGGGACGATGAGTTCAAGCC 60.036 55.000 0.00 0.00 0.00 4.35
950 1965 2.028112 CCTTCTTGGGACGATGAGTTCA 60.028 50.000 0.00 0.00 0.00 3.18
970 2012 2.579738 GGTCCTCGCTCCTGTTCC 59.420 66.667 0.00 0.00 0.00 3.62
1112 2185 5.803967 TGATCGATGAGATGAATATCGCAAG 59.196 40.000 0.54 0.00 44.47 4.01
1124 2200 0.039978 GTCGGCGTGATCGATGAGAT 60.040 55.000 0.54 0.00 43.51 2.75
1198 2275 3.447025 GACCCGAGGATTCGCCCTG 62.447 68.421 0.00 0.00 45.38 4.45
1281 2370 4.551671 AGGTACAGATTACTCCTGCTCAT 58.448 43.478 0.00 0.00 35.14 2.90
1538 3329 5.708230 AGTTGAGAGAACAGAGTAGTACAGG 59.292 44.000 2.52 0.00 0.00 4.00
1642 3456 1.012486 CGCCCTCCGTTCTACACAAC 61.012 60.000 0.00 0.00 0.00 3.32
1812 4751 6.263516 AGGAATAAAAGAAAACGTTAGGCC 57.736 37.500 0.00 0.00 0.00 5.19
1813 4752 7.591165 AGAAGGAATAAAAGAAAACGTTAGGC 58.409 34.615 0.00 0.00 0.00 3.93
1814 4753 9.961265 AAAGAAGGAATAAAAGAAAACGTTAGG 57.039 29.630 0.00 0.00 0.00 2.69
1830 4769 4.363991 ACAGTCAGCTGAAAGAAGGAAT 57.636 40.909 20.19 0.00 45.28 3.01
1833 4772 4.907879 AAAACAGTCAGCTGAAAGAAGG 57.092 40.909 20.19 6.96 45.28 3.46
1939 4879 8.358148 GGTAGTGCTAGTATTTATGCTTACAGA 58.642 37.037 0.00 0.00 0.00 3.41
1972 4912 4.197750 GGTGAGATAGACGTAGGACAGAA 58.802 47.826 0.00 0.00 0.00 3.02
1976 4926 3.186817 CGATGGTGAGATAGACGTAGGAC 59.813 52.174 0.00 0.00 0.00 3.85
1979 4929 3.139850 ACCGATGGTGAGATAGACGTAG 58.860 50.000 0.00 0.00 32.98 3.51
1980 4930 3.204306 ACCGATGGTGAGATAGACGTA 57.796 47.619 0.00 0.00 32.98 3.57
1981 4931 2.054232 ACCGATGGTGAGATAGACGT 57.946 50.000 0.00 0.00 32.98 4.34
1983 4933 3.150767 AGCTACCGATGGTGAGATAGAC 58.849 50.000 0.00 0.00 36.19 2.59
2008 4962 2.037136 CAGAGCCGGCAGGTGAAAG 61.037 63.158 31.54 5.19 40.50 2.62
2249 5229 3.206964 GCTTCCCCAGCTACAAGTATTC 58.793 50.000 0.00 0.00 46.27 1.75
2269 5249 3.964411 AGTTGGGGGAACTTGTATTAGC 58.036 45.455 0.00 0.00 42.70 3.09
2306 5286 7.929959 AGCACATACATCCTATACTACCTCTA 58.070 38.462 0.00 0.00 0.00 2.43
2389 5370 8.148351 AGATACCGTAGCATACATGTGTTATTT 58.852 33.333 9.11 0.00 43.24 1.40
2398 5379 4.600692 TTGCAGATACCGTAGCATACAT 57.399 40.909 0.00 0.00 43.24 2.29
2405 5386 2.883574 TCCGTTTTGCAGATACCGTAG 58.116 47.619 0.00 0.00 0.00 3.51
2460 5451 0.466124 AGCTGGGAGATAAGCCGAAC 59.534 55.000 0.00 0.00 40.42 3.95
2670 6615 1.367659 CAGTGCTCTCTGCTTAAGCC 58.632 55.000 24.30 8.49 43.37 4.35
2911 6871 9.798994 CGGAGGGAGTATGTATATATTTGTAAC 57.201 37.037 0.00 0.00 0.00 2.50
2925 6885 0.536687 TAGCGGACGGAGGGAGTATG 60.537 60.000 0.00 0.00 0.00 2.39
2929 6889 0.597072 GTATTAGCGGACGGAGGGAG 59.403 60.000 0.00 0.00 0.00 4.30
2930 6890 0.184451 AGTATTAGCGGACGGAGGGA 59.816 55.000 0.00 0.00 0.00 4.20
2931 6891 1.038280 AAGTATTAGCGGACGGAGGG 58.962 55.000 0.00 0.00 0.00 4.30
2932 6892 3.504906 TGATAAGTATTAGCGGACGGAGG 59.495 47.826 0.00 0.00 40.47 4.30
2933 6893 4.761235 TGATAAGTATTAGCGGACGGAG 57.239 45.455 0.00 0.00 40.47 4.63
2934 6894 4.763279 TGATGATAAGTATTAGCGGACGGA 59.237 41.667 0.00 0.00 40.47 4.69
2935 6895 5.055642 TGATGATAAGTATTAGCGGACGG 57.944 43.478 0.00 0.00 40.47 4.79
2936 6896 7.402811 TTTTGATGATAAGTATTAGCGGACG 57.597 36.000 0.00 0.00 40.47 4.79
2937 6897 8.230486 CCATTTTGATGATAAGTATTAGCGGAC 58.770 37.037 0.00 0.00 40.47 4.79
2938 6898 8.154203 TCCATTTTGATGATAAGTATTAGCGGA 58.846 33.333 0.00 0.00 40.47 5.54
2939 6899 8.322906 TCCATTTTGATGATAAGTATTAGCGG 57.677 34.615 0.00 0.00 40.47 5.52
2968 6928 2.936498 CCGGCGACAGATACATCTTTTT 59.064 45.455 9.30 0.00 34.22 1.94
2969 6929 2.167693 TCCGGCGACAGATACATCTTTT 59.832 45.455 9.30 0.00 34.22 2.27
2970 6930 1.754803 TCCGGCGACAGATACATCTTT 59.245 47.619 9.30 0.00 34.22 2.52
2971 6931 1.399714 TCCGGCGACAGATACATCTT 58.600 50.000 9.30 0.00 34.22 2.40
2972 6932 1.542030 GATCCGGCGACAGATACATCT 59.458 52.381 9.30 0.00 37.72 2.90
2973 6933 1.542030 AGATCCGGCGACAGATACATC 59.458 52.381 9.30 0.00 0.00 3.06
2974 6934 1.621992 AGATCCGGCGACAGATACAT 58.378 50.000 9.30 0.00 0.00 2.29
2975 6935 2.152016 CTAGATCCGGCGACAGATACA 58.848 52.381 9.30 0.00 0.00 2.29
2976 6936 1.469308 CCTAGATCCGGCGACAGATAC 59.531 57.143 9.30 0.00 0.00 2.24
2977 6937 1.822506 CCTAGATCCGGCGACAGATA 58.177 55.000 9.30 0.00 0.00 1.98
2978 6938 1.528292 GCCTAGATCCGGCGACAGAT 61.528 60.000 9.30 1.84 37.87 2.90
2979 6939 2.194212 GCCTAGATCCGGCGACAGA 61.194 63.158 9.30 0.00 37.87 3.41
2980 6940 2.336809 GCCTAGATCCGGCGACAG 59.663 66.667 9.30 0.00 37.87 3.51
2986 6946 1.303398 TCTAGCCGCCTAGATCCGG 60.303 63.158 0.00 0.00 43.89 5.14
2987 6947 4.399180 TCTAGCCGCCTAGATCCG 57.601 61.111 0.00 0.00 43.89 4.18
2992 6952 1.173043 CTCCAGATCTAGCCGCCTAG 58.827 60.000 0.00 0.00 42.01 3.02
2993 6953 0.896019 GCTCCAGATCTAGCCGCCTA 60.896 60.000 6.25 0.00 32.40 3.93
2994 6954 2.206536 GCTCCAGATCTAGCCGCCT 61.207 63.158 6.25 0.00 32.40 5.52
2995 6955 1.753368 AAGCTCCAGATCTAGCCGCC 61.753 60.000 12.89 0.00 39.64 6.13
2996 6956 0.105778 AAAGCTCCAGATCTAGCCGC 59.894 55.000 12.89 5.77 39.64 6.53
2997 6957 1.410517 TCAAAGCTCCAGATCTAGCCG 59.589 52.381 12.89 3.98 39.64 5.52
2998 6958 3.465871 CTTCAAAGCTCCAGATCTAGCC 58.534 50.000 12.89 0.00 39.64 3.93
2999 6959 3.118445 ACCTTCAAAGCTCCAGATCTAGC 60.118 47.826 9.15 9.15 39.08 3.42
3000 6960 4.440880 CACCTTCAAAGCTCCAGATCTAG 58.559 47.826 0.00 0.00 0.00 2.43
3001 6961 3.198635 CCACCTTCAAAGCTCCAGATCTA 59.801 47.826 0.00 0.00 0.00 1.98
3002 6962 2.026449 CCACCTTCAAAGCTCCAGATCT 60.026 50.000 0.00 0.00 0.00 2.75
3003 6963 2.290577 ACCACCTTCAAAGCTCCAGATC 60.291 50.000 0.00 0.00 0.00 2.75
3004 6964 1.707427 ACCACCTTCAAAGCTCCAGAT 59.293 47.619 0.00 0.00 0.00 2.90
3005 6965 1.072331 GACCACCTTCAAAGCTCCAGA 59.928 52.381 0.00 0.00 0.00 3.86
3006 6966 1.528129 GACCACCTTCAAAGCTCCAG 58.472 55.000 0.00 0.00 0.00 3.86
3007 6967 0.250295 CGACCACCTTCAAAGCTCCA 60.250 55.000 0.00 0.00 0.00 3.86
3008 6968 0.034896 TCGACCACCTTCAAAGCTCC 59.965 55.000 0.00 0.00 0.00 4.70
3009 6969 1.000955 TCTCGACCACCTTCAAAGCTC 59.999 52.381 0.00 0.00 0.00 4.09
3010 6970 1.048601 TCTCGACCACCTTCAAAGCT 58.951 50.000 0.00 0.00 0.00 3.74
3011 6971 2.100605 ATCTCGACCACCTTCAAAGC 57.899 50.000 0.00 0.00 0.00 3.51
3012 6972 4.177026 CACTATCTCGACCACCTTCAAAG 58.823 47.826 0.00 0.00 0.00 2.77
3013 6973 3.616560 GCACTATCTCGACCACCTTCAAA 60.617 47.826 0.00 0.00 0.00 2.69
3014 6974 2.094182 GCACTATCTCGACCACCTTCAA 60.094 50.000 0.00 0.00 0.00 2.69
3015 6975 1.476891 GCACTATCTCGACCACCTTCA 59.523 52.381 0.00 0.00 0.00 3.02
3016 6976 1.476891 TGCACTATCTCGACCACCTTC 59.523 52.381 0.00 0.00 0.00 3.46
3017 6977 1.204941 GTGCACTATCTCGACCACCTT 59.795 52.381 10.32 0.00 0.00 3.50
3018 6978 0.818296 GTGCACTATCTCGACCACCT 59.182 55.000 10.32 0.00 0.00 4.00
3019 6979 0.530744 TGTGCACTATCTCGACCACC 59.469 55.000 19.41 0.00 0.00 4.61
3020 6980 2.263077 CTTGTGCACTATCTCGACCAC 58.737 52.381 19.41 0.00 0.00 4.16
3021 6981 1.893137 ACTTGTGCACTATCTCGACCA 59.107 47.619 19.41 0.00 0.00 4.02
3022 6982 2.656560 ACTTGTGCACTATCTCGACC 57.343 50.000 19.41 0.00 0.00 4.79
3023 6983 3.318017 ACAACTTGTGCACTATCTCGAC 58.682 45.455 19.41 0.00 0.00 4.20
3024 6984 3.575630 GACAACTTGTGCACTATCTCGA 58.424 45.455 19.41 0.00 0.00 4.04
3025 6985 2.342651 CGACAACTTGTGCACTATCTCG 59.657 50.000 19.41 12.19 0.00 4.04
3026 6986 2.668457 CCGACAACTTGTGCACTATCTC 59.332 50.000 19.41 4.30 0.00 2.75
3027 6987 2.612972 CCCGACAACTTGTGCACTATCT 60.613 50.000 19.41 0.00 0.00 1.98
3028 6988 1.732259 CCCGACAACTTGTGCACTATC 59.268 52.381 19.41 4.00 0.00 2.08
3029 6989 1.071699 ACCCGACAACTTGTGCACTAT 59.928 47.619 19.41 0.00 0.00 2.12
3030 6990 0.466543 ACCCGACAACTTGTGCACTA 59.533 50.000 19.41 9.94 0.00 2.74
3031 6991 1.095228 CACCCGACAACTTGTGCACT 61.095 55.000 19.41 0.00 0.00 4.40
3032 6992 1.355210 CACCCGACAACTTGTGCAC 59.645 57.895 10.75 10.75 0.00 4.57
3033 6993 1.821759 CCACCCGACAACTTGTGCA 60.822 57.895 0.00 0.00 0.00 4.57
3034 6994 0.889186 ATCCACCCGACAACTTGTGC 60.889 55.000 0.00 0.00 0.00 4.57
3035 6995 1.604604 AATCCACCCGACAACTTGTG 58.395 50.000 0.00 0.00 0.00 3.33
3036 6996 2.158667 AGAAATCCACCCGACAACTTGT 60.159 45.455 0.00 0.00 0.00 3.16
3037 6997 2.504367 AGAAATCCACCCGACAACTTG 58.496 47.619 0.00 0.00 0.00 3.16
3038 6998 2.884639 CAAGAAATCCACCCGACAACTT 59.115 45.455 0.00 0.00 0.00 2.66
3039 6999 2.504367 CAAGAAATCCACCCGACAACT 58.496 47.619 0.00 0.00 0.00 3.16
3040 7000 1.539827 CCAAGAAATCCACCCGACAAC 59.460 52.381 0.00 0.00 0.00 3.32
3041 7001 1.546773 CCCAAGAAATCCACCCGACAA 60.547 52.381 0.00 0.00 0.00 3.18
3042 7002 0.037590 CCCAAGAAATCCACCCGACA 59.962 55.000 0.00 0.00 0.00 4.35
3043 7003 0.326927 TCCCAAGAAATCCACCCGAC 59.673 55.000 0.00 0.00 0.00 4.79
3044 7004 1.064758 CATCCCAAGAAATCCACCCGA 60.065 52.381 0.00 0.00 0.00 5.14
3045 7005 1.392589 CATCCCAAGAAATCCACCCG 58.607 55.000 0.00 0.00 0.00 5.28
3046 7006 1.287739 TCCATCCCAAGAAATCCACCC 59.712 52.381 0.00 0.00 0.00 4.61
3047 7007 2.826674 TCCATCCCAAGAAATCCACC 57.173 50.000 0.00 0.00 0.00 4.61
3048 7008 3.225940 GGATCCATCCCAAGAAATCCAC 58.774 50.000 6.95 0.00 41.20 4.02
3049 7009 2.158623 CGGATCCATCCCAAGAAATCCA 60.159 50.000 13.41 0.00 44.24 3.41
3050 7010 2.106511 TCGGATCCATCCCAAGAAATCC 59.893 50.000 13.41 0.00 44.24 3.01
3051 7011 3.181450 ACTCGGATCCATCCCAAGAAATC 60.181 47.826 13.41 0.00 44.24 2.17
3052 7012 2.780010 ACTCGGATCCATCCCAAGAAAT 59.220 45.455 13.41 0.00 44.24 2.17
3053 7013 2.092968 CACTCGGATCCATCCCAAGAAA 60.093 50.000 13.41 0.00 44.24 2.52
3054 7014 1.486310 CACTCGGATCCATCCCAAGAA 59.514 52.381 13.41 0.00 44.24 2.52
3055 7015 1.123077 CACTCGGATCCATCCCAAGA 58.877 55.000 13.41 0.00 44.24 3.02
3056 7016 1.123077 TCACTCGGATCCATCCCAAG 58.877 55.000 13.41 1.44 44.24 3.61
3057 7017 1.578897 TTCACTCGGATCCATCCCAA 58.421 50.000 13.41 0.00 44.24 4.12
3058 7018 1.209504 GTTTCACTCGGATCCATCCCA 59.790 52.381 13.41 0.00 44.24 4.37
3059 7019 1.475213 GGTTTCACTCGGATCCATCCC 60.475 57.143 13.41 0.00 44.24 3.85
3060 7020 1.486726 AGGTTTCACTCGGATCCATCC 59.513 52.381 13.41 0.00 43.65 3.51
3061 7021 2.939103 CAAGGTTTCACTCGGATCCATC 59.061 50.000 13.41 0.00 0.00 3.51
3062 7022 2.356125 CCAAGGTTTCACTCGGATCCAT 60.356 50.000 13.41 0.00 0.00 3.41
3063 7023 1.003118 CCAAGGTTTCACTCGGATCCA 59.997 52.381 13.41 0.00 0.00 3.41
3064 7024 1.003233 ACCAAGGTTTCACTCGGATCC 59.997 52.381 0.00 0.00 0.00 3.36
3065 7025 2.028020 AGACCAAGGTTTCACTCGGATC 60.028 50.000 0.00 0.00 0.00 3.36
3066 7026 1.978580 AGACCAAGGTTTCACTCGGAT 59.021 47.619 0.00 0.00 0.00 4.18
3067 7027 1.420430 AGACCAAGGTTTCACTCGGA 58.580 50.000 0.00 0.00 0.00 4.55
3068 7028 2.143925 GAAGACCAAGGTTTCACTCGG 58.856 52.381 0.00 0.00 0.00 4.63
3069 7029 1.792949 CGAAGACCAAGGTTTCACTCG 59.207 52.381 0.00 0.00 0.00 4.18
3070 7030 2.143925 CCGAAGACCAAGGTTTCACTC 58.856 52.381 0.00 0.00 0.00 3.51
3071 7031 1.489230 ACCGAAGACCAAGGTTTCACT 59.511 47.619 0.00 0.00 33.96 3.41
3072 7032 1.871676 GACCGAAGACCAAGGTTTCAC 59.128 52.381 0.00 0.00 38.57 3.18
3073 7033 1.766496 AGACCGAAGACCAAGGTTTCA 59.234 47.619 0.00 0.00 38.57 2.69
3074 7034 2.545537 AGACCGAAGACCAAGGTTTC 57.454 50.000 0.00 0.00 38.57 2.78
3075 7035 2.949644 CAAAGACCGAAGACCAAGGTTT 59.050 45.455 0.00 0.00 38.57 3.27
3076 7036 2.572290 CAAAGACCGAAGACCAAGGTT 58.428 47.619 0.00 0.00 38.57 3.50
3077 7037 1.202770 CCAAAGACCGAAGACCAAGGT 60.203 52.381 0.00 0.00 41.63 3.50
3078 7038 1.523758 CCAAAGACCGAAGACCAAGG 58.476 55.000 0.00 0.00 0.00 3.61
3079 7039 0.875059 GCCAAAGACCGAAGACCAAG 59.125 55.000 0.00 0.00 0.00 3.61
3080 7040 0.536460 GGCCAAAGACCGAAGACCAA 60.536 55.000 0.00 0.00 0.00 3.67
3081 7041 1.072505 GGCCAAAGACCGAAGACCA 59.927 57.895 0.00 0.00 0.00 4.02
3082 7042 3.982829 GGCCAAAGACCGAAGACC 58.017 61.111 0.00 0.00 0.00 3.85
3089 7049 3.053896 CGGTTCCGGCCAAAGACC 61.054 66.667 2.24 3.89 0.00 3.85
3090 7050 3.053896 CCGGTTCCGGCCAAAGAC 61.054 66.667 17.41 0.00 42.86 3.01
3099 7059 1.141019 ATCGTCATCACCGGTTCCG 59.859 57.895 2.97 2.77 0.00 4.30
3100 7060 1.429148 GCATCGTCATCACCGGTTCC 61.429 60.000 2.97 0.00 0.00 3.62
3101 7061 1.429148 GGCATCGTCATCACCGGTTC 61.429 60.000 2.97 0.00 0.00 3.62
3102 7062 1.449601 GGCATCGTCATCACCGGTT 60.450 57.895 2.97 0.00 0.00 4.44
3103 7063 2.186903 GGCATCGTCATCACCGGT 59.813 61.111 0.00 0.00 0.00 5.28
3104 7064 2.588877 GGGCATCGTCATCACCGG 60.589 66.667 0.00 0.00 0.00 5.28
3105 7065 0.104120 TAAGGGCATCGTCATCACCG 59.896 55.000 0.00 0.00 0.00 4.94
3106 7066 2.224281 TGATAAGGGCATCGTCATCACC 60.224 50.000 0.00 0.00 0.00 4.02
3107 7067 3.111853 TGATAAGGGCATCGTCATCAC 57.888 47.619 0.00 0.00 0.00 3.06
3108 7068 3.930336 GATGATAAGGGCATCGTCATCA 58.070 45.455 16.73 5.41 42.79 3.07
3115 7075 3.744660 AGGAAACGATGATAAGGGCATC 58.255 45.455 0.00 0.00 38.95 3.91
3116 7076 3.864789 AGGAAACGATGATAAGGGCAT 57.135 42.857 0.00 0.00 0.00 4.40
3117 7077 3.054728 TGAAGGAAACGATGATAAGGGCA 60.055 43.478 0.00 0.00 0.00 5.36
3118 7078 3.541632 TGAAGGAAACGATGATAAGGGC 58.458 45.455 0.00 0.00 0.00 5.19
3119 7079 7.801716 TTTATGAAGGAAACGATGATAAGGG 57.198 36.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.