AutoCloner

Multiple sequence alignment - TraesCS7B01G019400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G019400	chr7B	100.000	3347	0	0	1	3347	16706576	16709922	0.000000e+00	6181
1	TraesCS7B01G019400	chr7B	92.711	3265	199	14	109	3347	16514141	16517392	0.000000e+00	4674
2	TraesCS7B01G019400	chr7B	82.827	856	99	26	1849	2679	6401872	6401040	0.000000e+00	723
3	TraesCS7B01G019400	chr7B	95.536	112	5	0	1	112	299334667	299334778	2.650000e-41	180
4	TraesCS7B01G019400	chr7D	93.716	3262	167	13	109	3347	73621755	73618509	0.000000e+00	4854
5	TraesCS7B01G019400	chr7D	92.680	3265	172	26	109	3347	73545365	73548588	0.000000e+00	4643
6	TraesCS7B01G019400	chr7D	92.504	3255	193	27	117	3346	73362459	73365687	0.000000e+00	4612
7	TraesCS7B01G019400	chr7D	81.674	1959	287	53	752	2678	64830794	64828876	0.000000e+00	1563
8	TraesCS7B01G019400	chr7D	81.690	1065	173	17	752	1803	64809851	64808796	0.000000e+00	867
9	TraesCS7B01G019400	chr7D	83.916	858	93	28	1849	2679	64808780	64807941	0.000000e+00	778
10	TraesCS7B01G019400	chr7D	91.429	210	15	2	3136	3345	73365861	73366067	5.470000e-73	285
11	TraesCS7B01G019400	chr7A	93.321	3264	171	21	109	3347	78143350	78140109	0.000000e+00	4776
12	TraesCS7B01G019400	chr7A	92.557	3265	164	25	109	3347	77998137	78001348	0.000000e+00	4610
13	TraesCS7B01G019400	chr7A	91.493	3268	200	34	109	3346	77876511	77879730	0.000000e+00	4423
14	TraesCS7B01G019400	chr7A	82.116	1068	164	20	752	1803	68916776	68915720	0.000000e+00	889
15	TraesCS7B01G019400	chr7A	90.141	213	17	3	3135	3347	77879909	77880117	1.180000e-69	274
16	TraesCS7B01G019400	chr5B	94.828	116	5	1	1	116	164871762	164871648	2.650000e-41	180
17	TraesCS7B01G019400	chr5B	93.966	116	6	1	1	116	602789626	602789740	1.230000e-39	174
18	TraesCS7B01G019400	chr4B	94.828	116	5	1	1	116	460047236	460047350	2.650000e-41	180
19	TraesCS7B01G019400	chr4B	93.966	116	6	1	1	116	433154319	433154433	1.230000e-39	174
20	TraesCS7B01G019400	chr2B	94.828	116	5	1	1	116	95107086	95107200	2.650000e-41	180
21	TraesCS7B01G019400	chr2B	93.966	116	6	1	1	116	65580016	65580130	1.230000e-39	174
22	TraesCS7B01G019400	chr2B	93.966	116	6	1	1	116	670215322	670215208	1.230000e-39	174
23	TraesCS7B01G019400	chr2B	93.966	116	6	1	1	116	670243877	670243763	1.230000e-39	174

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G019400	chr7B	16706576	16709922	3346	False	6181.0	6181	100.0000	1	3347	1	chr7B.!!$F2	3346
1	TraesCS7B01G019400	chr7B	16514141	16517392	3251	False	4674.0	4674	92.7110	109	3347	1	chr7B.!!$F1	3238
2	TraesCS7B01G019400	chr7B	6401040	6401872	832	True	723.0	723	82.8270	1849	2679	1	chr7B.!!$R1	830
3	TraesCS7B01G019400	chr7D	73618509	73621755	3246	True	4854.0	4854	93.7160	109	3347	1	chr7D.!!$R2	3238
4	TraesCS7B01G019400	chr7D	73545365	73548588	3223	False	4643.0	4643	92.6800	109	3347	1	chr7D.!!$F1	3238
5	TraesCS7B01G019400	chr7D	73362459	73366067	3608	False	2448.5	4612	91.9665	117	3346	2	chr7D.!!$F2	3229
6	TraesCS7B01G019400	chr7D	64828876	64830794	1918	True	1563.0	1563	81.6740	752	2678	1	chr7D.!!$R1	1926
7	TraesCS7B01G019400	chr7D	64807941	64809851	1910	True	822.5	867	82.8030	752	2679	2	chr7D.!!$R3	1927
8	TraesCS7B01G019400	chr7A	78140109	78143350	3241	True	4776.0	4776	93.3210	109	3347	1	chr7A.!!$R2	3238
9	TraesCS7B01G019400	chr7A	77998137	78001348	3211	False	4610.0	4610	92.5570	109	3347	1	chr7A.!!$F1	3238
10	TraesCS7B01G019400	chr7A	77876511	77880117	3606	False	2348.5	4423	90.8170	109	3347	2	chr7A.!!$F2	3238
11	TraesCS7B01G019400	chr7A	68915720	68916776	1056	True	889.0	889	82.1160	752	1803	1	chr7A.!!$R1	1051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
66	67	0.179070	GGCCCCGCTGTTTTTGAAAA	60.179	50.000	2.29	F
67	68	1.217001	GCCCCGCTGTTTTTGAAAAG	58.783	50.000	2.27	F
1116	1133	1.271597	ACCAGCCATGAGAGGAACAAC	60.272	52.381	3.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1314	1332	0.776810	TTCCTTCCATGGCAACCTCA	59.223	50.0	6.96	0.00	0.00	3.86	R
1366	1384	1.087202	TGTATCGCCATGGTTCGCAC	61.087	55.0	14.67	10.67	0.00	5.34	R
2516	2579	0.530650	TAGCCCCTACTACGACGACG	60.531	60.0	5.58	5.58	45.75	5.12	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	4.796495	GCCGGTTTGCGGGGAGAT	62.796	66.667	1.90	0.00	35.83	2.75
44	45	2.824041	CCGGTTTGCGGGGAGATG	60.824	66.667	0.00	0.00	0.00	2.90
45	46	3.508840	CGGTTTGCGGGGAGATGC	61.509	66.667	0.00	0.00	0.00	3.91
46	47	3.508840	GGTTTGCGGGGAGATGCG	61.509	66.667	0.00	0.00	0.00	4.73
47	48	3.508840	GTTTGCGGGGAGATGCGG	61.509	66.667	0.00	0.00	0.00	5.69
48	49	4.794648	TTTGCGGGGAGATGCGGG	62.795	66.667	0.00	0.00	0.00	6.13
62	63	4.356442	CGGGCCCCGCTGTTTTTG	62.356	66.667	18.66	0.00	41.17	2.44
63	64	2.915137	GGGCCCCGCTGTTTTTGA	60.915	61.111	12.23	0.00	0.00	2.69
64	65	2.503382	GGGCCCCGCTGTTTTTGAA	61.503	57.895	12.23	0.00	0.00	2.69
65	66	1.443828	GGCCCCGCTGTTTTTGAAA	59.556	52.632	0.00	0.00	0.00	2.69
66	67	0.179070	GGCCCCGCTGTTTTTGAAAA	60.179	50.000	0.00	0.00	0.00	2.29
67	68	1.217001	GCCCCGCTGTTTTTGAAAAG	58.783	50.000	0.00	0.00	0.00	2.27
68	69	1.864565	CCCCGCTGTTTTTGAAAAGG	58.135	50.000	0.00	0.00	0.00	3.11
69	70	1.410882	CCCCGCTGTTTTTGAAAAGGA	59.589	47.619	0.00	0.00	0.00	3.36
70	71	2.037121	CCCCGCTGTTTTTGAAAAGGAT	59.963	45.455	0.00	0.00	0.00	3.24
71	72	3.494223	CCCCGCTGTTTTTGAAAAGGATT	60.494	43.478	0.00	0.00	0.00	3.01
72	73	3.740832	CCCGCTGTTTTTGAAAAGGATTC	59.259	43.478	0.00	0.00	0.00	2.52
73	74	3.425193	CCGCTGTTTTTGAAAAGGATTCG	59.575	43.478	0.00	0.00	0.00	3.34
74	75	3.425193	CGCTGTTTTTGAAAAGGATTCGG	59.575	43.478	0.00	0.00	0.00	4.30
75	76	3.740832	GCTGTTTTTGAAAAGGATTCGGG	59.259	43.478	0.00	0.00	0.00	5.14
76	77	4.739436	GCTGTTTTTGAAAAGGATTCGGGT	60.739	41.667	0.00	0.00	0.00	5.28
77	78	5.346181	TGTTTTTGAAAAGGATTCGGGTT	57.654	34.783	0.00	0.00	0.00	4.11
78	79	5.353111	TGTTTTTGAAAAGGATTCGGGTTC	58.647	37.500	0.00	0.00	0.00	3.62
79	80	4.594123	TTTTGAAAAGGATTCGGGTTCC	57.406	40.909	0.00	0.00	0.00	3.62
101	102	4.506255	CCTGCCCGGGGTTCATCC	62.506	72.222	25.28	3.41	0.00	3.51
126	127	1.652124	GACACGTAGTATGGTGCAACG	59.348	52.381	0.00	0.00	41.61	4.10
196	199	8.395633	GTTACATACGAAAGCCTTGTTCATATT	58.604	33.333	0.00	0.00	0.00	1.28
230	233	3.264706	TGGGAATCAAGGAAATCCGTACA	59.735	43.478	0.00	0.00	42.08	2.90
294	299	4.925054	AGCAATGGAAATTTGACACAATCG	59.075	37.500	0.00	0.00	0.00	3.34
315	320	8.547894	CAATCGTGTGGATTAAATCTTCGAATA	58.452	33.333	0.00	0.00	43.52	1.75
349	354	4.777896	ACTAGTCTCTGCCCATGACTTAAA	59.222	41.667	0.00	0.00	40.86	1.52
541	549	7.346751	AGAAGATAGACAAGATCAAGACTCC	57.653	40.000	0.00	0.00	0.00	3.85
750	760	9.103048	CGCCGAAACTATATTGACAATAAATTC	57.897	33.333	11.80	11.69	0.00	2.17
786	796	7.539436	TGCTAGTCTCGATATGTCATAAATCC	58.461	38.462	0.00	0.00	0.00	3.01
977	994	4.352595	TCCAACTCTCATTAGTTTTCCCCA	59.647	41.667	0.00	0.00	37.61	4.96
1063	1080	3.723681	AGAGGGGGCAAGATCAATCATTA	59.276	43.478	0.00	0.00	0.00	1.90
1064	1081	4.077822	GAGGGGGCAAGATCAATCATTAG	58.922	47.826	0.00	0.00	0.00	1.73
1073	1090	6.074409	GCAAGATCAATCATTAGTCGTCTCAG	60.074	42.308	0.00	0.00	0.00	3.35
1116	1133	1.271597	ACCAGCCATGAGAGGAACAAC	60.272	52.381	0.00	0.00	0.00	3.32
1173	1190	2.290896	CCCTAGGAAGACCATGCAACAA	60.291	50.000	11.48	0.00	38.94	2.83
1182	1199	4.655963	AGACCATGCAACAAGTAACAGAT	58.344	39.130	0.00	0.00	0.00	2.90
1274	1292	4.326826	AGTGACCATGGTGTCATTTACAG	58.673	43.478	25.52	0.00	46.20	2.74
1314	1332	9.949174	GTGAATAAAAACTTTGGATTGCAAAAT	57.051	25.926	1.71	0.00	0.00	1.82
1366	1384	3.868757	TTGGTCGTCCATTAGAGAGTG	57.131	47.619	1.21	0.00	43.91	3.51
1379	1397	1.639298	GAGAGTGTGCGAACCATGGC	61.639	60.000	13.04	0.00	0.00	4.40
1393	1411	1.869767	CCATGGCGATACAAGAAGAGC	59.130	52.381	0.00	0.00	0.00	4.09
1402	1420	4.330894	CGATACAAGAAGAGCTGCAAATGA	59.669	41.667	1.02	0.00	0.00	2.57
1525	1543	8.966868	GGTTATTCATGTTTCATCCTTCCTAAA	58.033	33.333	0.00	0.00	0.00	1.85
1576	1597	8.675705	TCATTTTGATTATTCGCTTGGAGATA	57.324	30.769	0.00	0.00	0.00	1.98
1583	1604	2.281539	TCGCTTGGAGATATCGGGTA	57.718	50.000	0.00	0.00	0.00	3.69
1680	1712	5.748670	TTTACTGTACTCATAGTGCCCAA	57.251	39.130	0.00	0.00	29.18	4.12
1696	1730	4.160252	GTGCCCAATTCACATACCAGAAAT	59.840	41.667	0.00	0.00	34.73	2.17
1788	1822	7.582667	AATAAGTTAATACCACCCATGCTTC	57.417	36.000	0.00	0.00	0.00	3.86
1998	2040	9.702253	AGATAAACAGAGATGTCCTTTACTAGA	57.298	33.333	0.00	0.00	0.00	2.43
2193	2251	7.829378	GAAGGACATATCAAAGTACTTCGTT	57.171	36.000	8.95	1.70	43.52	3.85
2432	2490	3.261897	ACTCCTTCGAGTCCATTTGTCAT	59.738	43.478	0.00	0.00	46.90	3.06
2448	2506	9.673454	CCATTTGTCATCATGAACAATATAGTG	57.327	33.333	12.55	0.00	0.00	2.74
2516	2579	9.486497	AGTATGTTGTGAGAATGATATGATGTC	57.514	33.333	0.00	0.00	0.00	3.06
2555	2619	6.461640	GGCTAGTGAACTTTGTTCCTACTAA	58.538	40.000	7.81	0.00	0.00	2.24
2603	2667	8.094548	TCCTTCAAAGTATTGTATGGGATATCG	58.905	37.037	0.00	0.00	37.79	2.92
2828	2892	4.288626	AGGTGAAAACCAGCCTCATTAGTA	59.711	41.667	0.00	0.00	44.01	1.82
2867	2931	4.162040	AGCTCGGGATTGATTCTTGAAT	57.838	40.909	0.00	0.00	0.00	2.57
2922	2986	6.591935	AGTTTTGTAGTTCATGGTTGAGAGA	58.408	36.000	0.00	0.00	32.27	3.10
2953	3017	9.179909	TGGTAAGTTGAGTATTGAAAAGTGAAA	57.820	29.630	0.00	0.00	0.00	2.69
3060	3125	1.558756	ACTCCATGGAGGCTTCAAGAG	59.441	52.381	38.54	19.51	45.88	2.85
3066	3132	4.321527	CCATGGAGGCTTCAAGAGAAAAAC	60.322	45.833	5.56	0.00	32.35	2.43
3106	3172	0.323629	ATTTTGGAGACGAAGCGGGA	59.676	50.000	0.00	0.00	34.49	5.14
3174	3645	5.028549	AGAATCTTGGAATGCGACTACAT	57.971	39.130	0.00	0.00	0.00	2.29
3233	3704	1.271656	CTTGAGAAGCAAGCCTTTGGG	59.728	52.381	0.00	0.00	46.67	4.12
3234	3705	0.540365	TGAGAAGCAAGCCTTTGGGG	60.540	55.000	0.00	0.00	34.79	4.96
3238	3709	1.001293	GAAGCAAGCCTTTGGGGAAAG	59.999	52.381	0.00	0.00	37.23	2.62
3242	3713	2.548707	GCAAGCCTTTGGGGAAAGAAAG	60.549	50.000	0.00	0.00	37.23	2.62

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	3.508840	GCATCTCCCCGCAAACCG	61.509	66.667	0.00	0.00	0.00	4.44
29	30	3.508840	CGCATCTCCCCGCAAACC	61.509	66.667	0.00	0.00	0.00	3.27
30	31	3.508840	CCGCATCTCCCCGCAAAC	61.509	66.667	0.00	0.00	0.00	2.93
31	32	4.794648	CCCGCATCTCCCCGCAAA	62.795	66.667	0.00	0.00	0.00	3.68
46	47	2.034048	TTTCAAAAACAGCGGGGCCC	62.034	55.000	15.76	15.76	0.00	5.80
47	48	0.179070	TTTTCAAAAACAGCGGGGCC	60.179	50.000	0.00	0.00	0.00	5.80
48	49	1.217001	CTTTTCAAAAACAGCGGGGC	58.783	50.000	0.00	0.00	0.00	5.80
49	50	1.410882	TCCTTTTCAAAAACAGCGGGG	59.589	47.619	0.00	0.00	0.00	5.73
50	51	2.880963	TCCTTTTCAAAAACAGCGGG	57.119	45.000	0.00	0.00	0.00	6.13
51	52	3.425193	CGAATCCTTTTCAAAAACAGCGG	59.575	43.478	0.00	0.00	0.00	5.52
52	53	3.425193	CCGAATCCTTTTCAAAAACAGCG	59.575	43.478	0.00	0.00	0.00	5.18
53	54	3.740832	CCCGAATCCTTTTCAAAAACAGC	59.259	43.478	0.00	0.00	0.00	4.40
54	55	4.944048	ACCCGAATCCTTTTCAAAAACAG	58.056	39.130	0.00	0.00	0.00	3.16
55	56	5.346181	AACCCGAATCCTTTTCAAAAACA	57.654	34.783	0.00	0.00	0.00	2.83
56	57	4.748102	GGAACCCGAATCCTTTTCAAAAAC	59.252	41.667	0.00	0.00	33.98	2.43
57	58	4.951254	GGAACCCGAATCCTTTTCAAAAA	58.049	39.130	0.00	0.00	33.98	1.94
58	59	4.594123	GGAACCCGAATCCTTTTCAAAA	57.406	40.909	0.00	0.00	33.98	2.44
84	85	4.506255	GGATGAACCCCGGGCAGG	62.506	72.222	17.73	3.81	40.63	4.85
101	102	1.039233	ACCATACTACGTGTCGGGGG	61.039	60.000	0.00	0.00	0.00	5.40
102	103	0.101759	CACCATACTACGTGTCGGGG	59.898	60.000	0.00	0.00	0.00	5.73
103	104	0.526954	GCACCATACTACGTGTCGGG	60.527	60.000	0.00	2.74	32.40	5.14
104	105	0.171679	TGCACCATACTACGTGTCGG	59.828	55.000	0.00	1.99	32.40	4.79
105	106	1.652124	GTTGCACCATACTACGTGTCG	59.348	52.381	0.00	0.00	32.40	4.35
106	107	1.652124	CGTTGCACCATACTACGTGTC	59.348	52.381	0.00	0.00	32.78	3.67
107	108	1.000060	ACGTTGCACCATACTACGTGT	60.000	47.619	9.48	0.00	45.23	4.49
196	199	1.073125	TGATTCCCAAACGAAGCCTCA	59.927	47.619	0.00	0.00	0.00	3.86
204	207	3.427503	CGGATTTCCTTGATTCCCAAACG	60.428	47.826	0.00	0.00	33.76	3.60
272	277	4.685628	ACGATTGTGTCAAATTTCCATTGC	59.314	37.500	0.00	0.00	0.00	3.56
310	315	8.910666	CAGAGACTAGTCTTTGCATTATATTCG	58.089	37.037	25.43	3.22	40.61	3.34
349	354	5.221106	CGCATGGGTGTATGATTCAAGAAAT	60.221	40.000	0.68	0.00	0.00	2.17
674	684	9.297037	GTACTAATAATGCCTCACCCAAAATAT	57.703	33.333	0.00	0.00	0.00	1.28
750	760	8.741278	CATATCGAGACTAGCAATTTCATATCG	58.259	37.037	0.00	0.00	0.00	2.92
947	961	9.543018	GAAAACTAATGAGAGTTGGATAAAACG	57.457	33.333	0.00	0.00	39.62	3.60
1063	1080	3.409570	TGTAGTAGTTGCTGAGACGACT	58.590	45.455	0.00	0.00	37.96	4.18
1064	1081	3.826236	TGTAGTAGTTGCTGAGACGAC	57.174	47.619	0.00	0.00	0.00	4.34
1073	1090	4.155826	TGCCATCATTGTTGTAGTAGTTGC	59.844	41.667	0.00	0.00	0.00	4.17
1109	1126	4.496341	CCACGATATCATGCTTGTTGTTCC	60.496	45.833	3.12	0.00	0.00	3.62
1116	1133	1.596603	TGGCCACGATATCATGCTTG	58.403	50.000	0.00	0.00	0.00	4.01
1215	1233	1.980765	TCCTTCTCTGGACACTGCAAT	59.019	47.619	0.00	0.00	0.00	3.56
1274	1292	1.549203	ATTCACAAGGCCATCCACAC	58.451	50.000	5.01	0.00	33.74	3.82
1314	1332	0.776810	TTCCTTCCATGGCAACCTCA	59.223	50.000	6.96	0.00	0.00	3.86
1366	1384	1.087202	TGTATCGCCATGGTTCGCAC	61.087	55.000	14.67	10.67	0.00	5.34
1379	1397	4.330894	TCATTTGCAGCTCTTCTTGTATCG	59.669	41.667	0.00	0.00	0.00	2.92
1393	1411	5.296283	CCTTGTTCTCCTCTATCATTTGCAG	59.704	44.000	0.00	0.00	0.00	4.41
1402	1420	3.521727	ACACCACCTTGTTCTCCTCTAT	58.478	45.455	0.00	0.00	0.00	1.98
1783	1817	4.085357	TCTTTAGTTGCAAGGAGAAGCA	57.915	40.909	0.00	0.00	39.32	3.91
1788	1822	4.583871	ACTCCATCTTTAGTTGCAAGGAG	58.416	43.478	19.90	19.90	45.24	3.69
1998	2040	9.596308	ACTTCTAACCAAATATTAACCCTTGTT	57.404	29.630	0.00	0.00	38.52	2.83
2020	2062	7.832769	TGCAATAGTTGGGGTATTAAAACTTC	58.167	34.615	0.00	0.00	34.76	3.01
2105	2157	6.116126	AGCCTAGAATAACCATGTTCAAGAC	58.884	40.000	0.00	0.00	0.00	3.01
2193	2251	2.175069	CTGGGCTGGAGTCCTACTAGTA	59.825	54.545	11.33	1.89	41.34	1.82
2345	2403	3.360340	GCAAGGCGAGTGCTTGCT	61.360	61.111	14.94	0.00	44.54	3.91
2393	2451	5.669164	AGGAGTTTGCAAACCAAAACTTA	57.331	34.783	33.09	0.00	44.48	2.24
2432	2490	9.599866	CTCCAAACTACACTATATTGTTCATGA	57.400	33.333	0.59	0.00	0.00	3.07
2448	2506	5.365619	TCAGGAAAGACAACTCCAAACTAC	58.634	41.667	0.00	0.00	33.83	2.73
2516	2579	0.530650	TAGCCCCTACTACGACGACG	60.531	60.000	5.58	5.58	45.75	5.12
2867	2931	3.569277	CACACATCCAACTTGTCAATCCA	59.431	43.478	0.00	0.00	0.00	3.41
3060	3125	5.049336	AGCTTCTCTTTAGCCTTCGTTTTTC	60.049	40.000	0.00	0.00	39.47	2.29
3066	3132	6.670077	AATAAAGCTTCTCTTTAGCCTTCG	57.330	37.500	0.00	0.00	46.84	3.79
3174	3645	1.578703	TCTAGGGATCCAGTTGGCCTA	59.421	52.381	15.23	2.83	34.44	3.93
3233	3704	7.096436	GCTTTTCTCGAAACAATCTTTCTTTCC	60.096	37.037	0.00	0.00	0.00	3.13
3234	3705	7.096436	GGCTTTTCTCGAAACAATCTTTCTTTC	60.096	37.037	0.00	0.00	0.00	2.62
3238	3709	4.613031	CGGCTTTTCTCGAAACAATCTTTC	59.387	41.667	0.00	0.00	0.00	2.62
3242	3713	3.806316	TCGGCTTTTCTCGAAACAATC	57.194	42.857	0.00	0.00	32.11	2.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.