Multiple sequence alignment - TraesCS7B01G019000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G019000 chr7B 100.000 2652 0 0 1 2652 16135030 16137681 0.000000e+00 4898
1 TraesCS7B01G019000 chr7B 90.883 691 41 13 898 1579 13329716 13329039 0.000000e+00 907
2 TraesCS7B01G019000 chr7B 88.456 719 54 23 749 1453 14980502 14981205 0.000000e+00 841
3 TraesCS7B01G019000 chr7B 92.255 581 31 8 2076 2652 13328301 13327731 0.000000e+00 811
4 TraesCS7B01G019000 chr7B 97.101 207 5 1 1 206 14869502 14869708 5.430000e-92 348
5 TraesCS7B01G019000 chr7B 94.313 211 8 1 1578 1788 13328969 13328763 1.180000e-83 320
6 TraesCS7B01G019000 chr7B 96.721 183 5 1 1853 2034 13328626 13328444 1.190000e-78 303
7 TraesCS7B01G019000 chr7B 86.017 236 17 11 664 890 13330226 13329998 3.410000e-59 239
8 TraesCS7B01G019000 chr7B 97.561 82 2 0 1775 1856 13328750 13328669 9.900000e-30 141
9 TraesCS7B01G019000 chr7B 96.923 65 2 0 299 363 14869709 14869773 2.790000e-20 110
10 TraesCS7B01G019000 chr7A 90.201 847 44 14 747 1579 76954424 76953603 0.000000e+00 1068
11 TraesCS7B01G019000 chr4B 88.903 793 58 22 749 1531 512335510 512334738 0.000000e+00 950
12 TraesCS7B01G019000 chr7D 91.654 683 45 7 907 1579 70905451 70904771 0.000000e+00 935
13 TraesCS7B01G019000 chr7D 95.981 423 17 0 1032 1454 73117139 73116717 0.000000e+00 688
14 TraesCS7B01G019000 chr7D 82.117 822 72 31 1582 2352 70904701 70903904 3.720000e-178 634
15 TraesCS7B01G019000 chr7D 89.362 141 9 4 687 827 70905870 70905736 3.510000e-39 172
16 TraesCS7B01G019000 chr4A 89.517 725 55 14 749 1467 48275171 48275880 0.000000e+00 898
17 TraesCS7B01G019000 chr4D 87.121 792 67 24 748 1531 415583997 415583233 0.000000e+00 865
18 TraesCS7B01G019000 chr4D 83.051 177 26 4 452 627 312587531 312587358 9.830000e-35 158
19 TraesCS7B01G019000 chrUn 86.158 708 59 26 754 1451 84331365 84330687 0.000000e+00 728
20 TraesCS7B01G019000 chr2D 83.333 234 32 7 434 661 623761359 623761591 2.670000e-50 209
21 TraesCS7B01G019000 chr2D 81.250 208 24 8 2320 2523 649146841 649147037 1.270000e-33 154
22 TraesCS7B01G019000 chr2D 77.387 199 38 5 2331 2523 649182049 649182246 7.760000e-21 111
23 TraesCS7B01G019000 chr2B 82.126 207 27 7 2320 2523 785137209 785137408 4.540000e-38 169
24 TraesCS7B01G019000 chr2A 81.159 207 28 6 2320 2523 775525515 775525317 3.530000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G019000 chr7B 16135030 16137681 2651 False 4898.000000 4898 100.000000 1 2652 1 chr7B.!!$F2 2651
1 TraesCS7B01G019000 chr7B 14980502 14981205 703 False 841.000000 841 88.456000 749 1453 1 chr7B.!!$F1 704
2 TraesCS7B01G019000 chr7B 13327731 13330226 2495 True 453.500000 907 92.958333 664 2652 6 chr7B.!!$R1 1988
3 TraesCS7B01G019000 chr7A 76953603 76954424 821 True 1068.000000 1068 90.201000 747 1579 1 chr7A.!!$R1 832
4 TraesCS7B01G019000 chr4B 512334738 512335510 772 True 950.000000 950 88.903000 749 1531 1 chr4B.!!$R1 782
5 TraesCS7B01G019000 chr7D 70903904 70905870 1966 True 580.333333 935 87.711000 687 2352 3 chr7D.!!$R2 1665
6 TraesCS7B01G019000 chr4A 48275171 48275880 709 False 898.000000 898 89.517000 749 1467 1 chr4A.!!$F1 718
7 TraesCS7B01G019000 chr4D 415583233 415583997 764 True 865.000000 865 87.121000 748 1531 1 chr4D.!!$R2 783
8 TraesCS7B01G019000 chrUn 84330687 84331365 678 True 728.000000 728 86.158000 754 1451 1 chrUn.!!$R1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 680 0.038159 CTCGAAGACCACCGAAAGCT 60.038 55.0 0.0 0.0 34.17 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 2141 0.031178 GCAACAACTGTTCCAGCCAG 59.969 55.0 0.0 0.0 35.83 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.905713 AACATTCCATAGATACTACACACAAAT 57.094 29.630 0.00 0.00 0.00 2.32
27 28 9.905713 ACATTCCATAGATACTACACACAAATT 57.094 29.630 0.00 0.00 0.00 1.82
30 31 9.952030 TTCCATAGATACTACACACAAATTTGA 57.048 29.630 24.64 0.68 0.00 2.69
31 32 9.952030 TCCATAGATACTACACACAAATTTGAA 57.048 29.630 24.64 3.93 0.00 2.69
32 33 9.988350 CCATAGATACTACACACAAATTTGAAC 57.012 33.333 24.64 0.00 0.00 3.18
33 34 9.988350 CATAGATACTACACACAAATTTGAACC 57.012 33.333 24.64 2.27 0.00 3.62
34 35 9.733556 ATAGATACTACACACAAATTTGAACCA 57.266 29.630 24.64 4.91 0.00 3.67
35 36 8.635765 AGATACTACACACAAATTTGAACCAT 57.364 30.769 24.64 8.27 0.00 3.55
36 37 9.077885 AGATACTACACACAAATTTGAACCATT 57.922 29.630 24.64 6.18 0.00 3.16
37 38 9.341899 GATACTACACACAAATTTGAACCATTC 57.658 33.333 24.64 6.57 0.00 2.67
38 39 6.512297 ACTACACACAAATTTGAACCATTCC 58.488 36.000 24.64 0.00 0.00 3.01
39 40 5.350504 ACACACAAATTTGAACCATTCCA 57.649 34.783 24.64 0.00 0.00 3.53
40 41 5.738909 ACACACAAATTTGAACCATTCCAA 58.261 33.333 24.64 0.00 0.00 3.53
41 42 6.355747 ACACACAAATTTGAACCATTCCAAT 58.644 32.000 24.64 0.00 0.00 3.16
42 43 6.482973 ACACACAAATTTGAACCATTCCAATC 59.517 34.615 24.64 0.00 0.00 2.67
43 44 5.695816 ACACAAATTTGAACCATTCCAATCG 59.304 36.000 24.64 0.00 0.00 3.34
44 45 4.690280 ACAAATTTGAACCATTCCAATCGC 59.310 37.500 24.64 0.00 0.00 4.58
45 46 4.806640 AATTTGAACCATTCCAATCGCT 57.193 36.364 0.00 0.00 0.00 4.93
46 47 5.913137 AATTTGAACCATTCCAATCGCTA 57.087 34.783 0.00 0.00 0.00 4.26
47 48 5.913137 ATTTGAACCATTCCAATCGCTAA 57.087 34.783 0.00 0.00 0.00 3.09
48 49 5.713792 TTTGAACCATTCCAATCGCTAAA 57.286 34.783 0.00 0.00 0.00 1.85
49 50 5.913137 TTGAACCATTCCAATCGCTAAAT 57.087 34.783 0.00 0.00 0.00 1.40
50 51 5.499139 TGAACCATTCCAATCGCTAAATC 57.501 39.130 0.00 0.00 0.00 2.17
51 52 4.946772 TGAACCATTCCAATCGCTAAATCA 59.053 37.500 0.00 0.00 0.00 2.57
52 53 5.593909 TGAACCATTCCAATCGCTAAATCAT 59.406 36.000 0.00 0.00 0.00 2.45
53 54 6.096705 TGAACCATTCCAATCGCTAAATCATT 59.903 34.615 0.00 0.00 0.00 2.57
54 55 6.469782 ACCATTCCAATCGCTAAATCATTT 57.530 33.333 0.00 0.00 0.00 2.32
55 56 6.507023 ACCATTCCAATCGCTAAATCATTTC 58.493 36.000 0.00 0.00 0.00 2.17
56 57 6.096705 ACCATTCCAATCGCTAAATCATTTCA 59.903 34.615 0.00 0.00 0.00 2.69
57 58 6.418819 CCATTCCAATCGCTAAATCATTTCAC 59.581 38.462 0.00 0.00 0.00 3.18
58 59 6.507958 TTCCAATCGCTAAATCATTTCACA 57.492 33.333 0.00 0.00 0.00 3.58
59 60 6.698008 TCCAATCGCTAAATCATTTCACAT 57.302 33.333 0.00 0.00 0.00 3.21
60 61 7.800155 TCCAATCGCTAAATCATTTCACATA 57.200 32.000 0.00 0.00 0.00 2.29
61 62 8.394971 TCCAATCGCTAAATCATTTCACATAT 57.605 30.769 0.00 0.00 0.00 1.78
62 63 8.506437 TCCAATCGCTAAATCATTTCACATATC 58.494 33.333 0.00 0.00 0.00 1.63
63 64 8.509690 CCAATCGCTAAATCATTTCACATATCT 58.490 33.333 0.00 0.00 0.00 1.98
64 65 9.888878 CAATCGCTAAATCATTTCACATATCTT 57.111 29.630 0.00 0.00 0.00 2.40
65 66 9.888878 AATCGCTAAATCATTTCACATATCTTG 57.111 29.630 0.00 0.00 0.00 3.02
66 67 8.661352 TCGCTAAATCATTTCACATATCTTGA 57.339 30.769 0.00 0.00 0.00 3.02
67 68 8.551205 TCGCTAAATCATTTCACATATCTTGAC 58.449 33.333 0.00 0.00 0.00 3.18
68 69 8.337532 CGCTAAATCATTTCACATATCTTGACA 58.662 33.333 0.00 0.00 0.00 3.58
69 70 9.443283 GCTAAATCATTTCACATATCTTGACAC 57.557 33.333 0.00 0.00 0.00 3.67
103 104 9.246670 AGAAATAGTCACATCCAATCAATTTCA 57.753 29.630 0.00 0.00 34.71 2.69
105 106 9.811995 AAATAGTCACATCCAATCAATTTCATG 57.188 29.630 0.00 0.00 0.00 3.07
106 107 8.756486 ATAGTCACATCCAATCAATTTCATGA 57.244 30.769 0.00 0.00 0.00 3.07
107 108 7.470935 AGTCACATCCAATCAATTTCATGAA 57.529 32.000 3.38 3.38 32.06 2.57
108 109 8.074613 AGTCACATCCAATCAATTTCATGAAT 57.925 30.769 9.40 0.00 32.06 2.57
109 110 8.537016 AGTCACATCCAATCAATTTCATGAATT 58.463 29.630 9.40 2.66 38.49 2.17
110 111 9.158233 GTCACATCCAATCAATTTCATGAATTT 57.842 29.630 9.40 9.33 35.79 1.82
111 112 9.157104 TCACATCCAATCAATTTCATGAATTTG 57.843 29.630 26.36 26.36 35.79 2.32
112 113 9.157104 CACATCCAATCAATTTCATGAATTTGA 57.843 29.630 32.11 32.11 41.73 2.69
113 114 9.899661 ACATCCAATCAATTTCATGAATTTGAT 57.100 25.926 33.03 33.03 45.55 2.57
134 135 8.550280 TTGATTATTTCAAATCATCCCCATCA 57.450 30.769 2.47 0.00 43.50 3.07
135 136 8.730093 TGATTATTTCAAATCATCCCCATCAT 57.270 30.769 2.47 0.00 40.17 2.45
136 137 9.825706 TGATTATTTCAAATCATCCCCATCATA 57.174 29.630 2.47 0.00 40.17 2.15
138 139 9.604569 ATTATTTCAAATCATCCCCATCATACA 57.395 29.630 0.00 0.00 0.00 2.29
139 140 6.713762 TTTCAAATCATCCCCATCATACAC 57.286 37.500 0.00 0.00 0.00 2.90
140 141 4.728772 TCAAATCATCCCCATCATACACC 58.271 43.478 0.00 0.00 0.00 4.16
141 142 4.167697 TCAAATCATCCCCATCATACACCA 59.832 41.667 0.00 0.00 0.00 4.17
142 143 4.812403 AATCATCCCCATCATACACCAA 57.188 40.909 0.00 0.00 0.00 3.67
143 144 5.343833 AATCATCCCCATCATACACCAAT 57.656 39.130 0.00 0.00 0.00 3.16
144 145 4.812403 TCATCCCCATCATACACCAATT 57.188 40.909 0.00 0.00 0.00 2.32
145 146 5.921153 TCATCCCCATCATACACCAATTA 57.079 39.130 0.00 0.00 0.00 1.40
146 147 6.272953 TCATCCCCATCATACACCAATTAA 57.727 37.500 0.00 0.00 0.00 1.40
147 148 6.677552 TCATCCCCATCATACACCAATTAAA 58.322 36.000 0.00 0.00 0.00 1.52
148 149 7.304479 TCATCCCCATCATACACCAATTAAAT 58.696 34.615 0.00 0.00 0.00 1.40
149 150 7.788867 TCATCCCCATCATACACCAATTAAATT 59.211 33.333 0.00 0.00 0.00 1.82
150 151 9.087871 CATCCCCATCATACACCAATTAAATTA 57.912 33.333 0.00 0.00 0.00 1.40
151 152 8.704849 TCCCCATCATACACCAATTAAATTAG 57.295 34.615 0.00 0.00 0.00 1.73
152 153 8.285891 TCCCCATCATACACCAATTAAATTAGT 58.714 33.333 0.00 0.00 0.00 2.24
153 154 9.581289 CCCCATCATACACCAATTAAATTAGTA 57.419 33.333 0.00 0.00 0.00 1.82
194 195 9.993454 TGAAATTACATTGGAATCACATTTGAA 57.007 25.926 0.00 0.00 34.61 2.69
198 199 9.865321 ATTACATTGGAATCACATTTGAAAGAG 57.135 29.630 0.00 0.00 34.61 2.85
199 200 6.694447 ACATTGGAATCACATTTGAAAGAGG 58.306 36.000 0.00 0.00 34.61 3.69
200 201 6.494491 ACATTGGAATCACATTTGAAAGAGGA 59.506 34.615 0.00 0.00 34.61 3.71
201 202 6.975196 TTGGAATCACATTTGAAAGAGGAA 57.025 33.333 0.00 0.00 34.61 3.36
202 203 6.579666 TGGAATCACATTTGAAAGAGGAAG 57.420 37.500 0.00 0.00 34.61 3.46
203 204 5.047802 TGGAATCACATTTGAAAGAGGAAGC 60.048 40.000 0.00 0.00 34.61 3.86
204 205 5.047802 GGAATCACATTTGAAAGAGGAAGCA 60.048 40.000 0.00 0.00 34.61 3.91
205 206 4.836125 TCACATTTGAAAGAGGAAGCAC 57.164 40.909 0.00 0.00 0.00 4.40
206 207 4.464008 TCACATTTGAAAGAGGAAGCACT 58.536 39.130 0.00 0.00 0.00 4.40
207 208 4.889409 TCACATTTGAAAGAGGAAGCACTT 59.111 37.500 0.00 0.00 0.00 3.16
208 209 4.980434 CACATTTGAAAGAGGAAGCACTTG 59.020 41.667 0.00 0.00 0.00 3.16
209 210 4.646492 ACATTTGAAAGAGGAAGCACTTGT 59.354 37.500 0.00 0.00 0.00 3.16
210 211 5.127682 ACATTTGAAAGAGGAAGCACTTGTT 59.872 36.000 0.00 0.00 0.00 2.83
211 212 4.900635 TTGAAAGAGGAAGCACTTGTTC 57.099 40.909 0.00 0.00 0.00 3.18
212 213 3.884895 TGAAAGAGGAAGCACTTGTTCA 58.115 40.909 0.00 0.00 0.00 3.18
213 214 3.627577 TGAAAGAGGAAGCACTTGTTCAC 59.372 43.478 0.00 0.00 0.00 3.18
214 215 3.281727 AAGAGGAAGCACTTGTTCACA 57.718 42.857 0.00 0.00 0.00 3.58
215 216 3.281727 AGAGGAAGCACTTGTTCACAA 57.718 42.857 0.00 0.00 0.00 3.33
216 217 2.945668 AGAGGAAGCACTTGTTCACAAC 59.054 45.455 0.00 0.00 0.00 3.32
217 218 2.945668 GAGGAAGCACTTGTTCACAACT 59.054 45.455 0.00 0.00 0.00 3.16
218 219 2.684881 AGGAAGCACTTGTTCACAACTG 59.315 45.455 0.00 0.00 0.00 3.16
219 220 2.454055 GAAGCACTTGTTCACAACTGC 58.546 47.619 13.45 13.45 42.24 4.40
220 221 0.378257 AGCACTTGTTCACAACTGCG 59.622 50.000 14.70 0.00 44.66 5.18
221 222 0.376852 GCACTTGTTCACAACTGCGA 59.623 50.000 8.08 0.00 36.49 5.10
222 223 1.202132 GCACTTGTTCACAACTGCGAA 60.202 47.619 8.08 0.00 36.49 4.70
223 224 2.730715 GCACTTGTTCACAACTGCGAAA 60.731 45.455 8.08 0.00 36.49 3.46
224 225 2.845967 CACTTGTTCACAACTGCGAAAC 59.154 45.455 0.00 0.00 0.00 2.78
225 226 2.159435 ACTTGTTCACAACTGCGAAACC 60.159 45.455 0.00 0.00 0.00 3.27
226 227 1.454201 TGTTCACAACTGCGAAACCA 58.546 45.000 0.00 0.00 0.00 3.67
227 228 1.813178 TGTTCACAACTGCGAAACCAA 59.187 42.857 0.00 0.00 0.00 3.67
228 229 2.229062 TGTTCACAACTGCGAAACCAAA 59.771 40.909 0.00 0.00 0.00 3.28
229 230 3.246619 GTTCACAACTGCGAAACCAAAA 58.753 40.909 0.00 0.00 0.00 2.44
230 231 3.577649 TCACAACTGCGAAACCAAAAA 57.422 38.095 0.00 0.00 0.00 1.94
231 232 3.506810 TCACAACTGCGAAACCAAAAAG 58.493 40.909 0.00 0.00 0.00 2.27
232 233 3.191581 TCACAACTGCGAAACCAAAAAGA 59.808 39.130 0.00 0.00 0.00 2.52
233 234 4.111916 CACAACTGCGAAACCAAAAAGAT 58.888 39.130 0.00 0.00 0.00 2.40
234 235 4.566360 CACAACTGCGAAACCAAAAAGATT 59.434 37.500 0.00 0.00 0.00 2.40
235 236 5.063312 CACAACTGCGAAACCAAAAAGATTT 59.937 36.000 0.00 0.00 0.00 2.17
236 237 5.641636 ACAACTGCGAAACCAAAAAGATTTT 59.358 32.000 0.00 0.00 0.00 1.82
237 238 5.717038 ACTGCGAAACCAAAAAGATTTTG 57.283 34.783 8.27 8.27 0.00 2.44
238 239 5.175127 ACTGCGAAACCAAAAAGATTTTGT 58.825 33.333 12.91 1.46 0.00 2.83
239 240 5.063312 ACTGCGAAACCAAAAAGATTTTGTG 59.937 36.000 12.91 8.06 0.00 3.33
240 241 5.171476 TGCGAAACCAAAAAGATTTTGTGA 58.829 33.333 12.91 0.00 0.00 3.58
241 242 5.639506 TGCGAAACCAAAAAGATTTTGTGAA 59.360 32.000 12.91 0.00 0.00 3.18
242 243 6.314896 TGCGAAACCAAAAAGATTTTGTGAAT 59.685 30.769 12.91 0.00 0.00 2.57
243 244 7.148340 TGCGAAACCAAAAAGATTTTGTGAATT 60.148 29.630 12.91 4.36 0.00 2.17
244 245 7.696035 GCGAAACCAAAAAGATTTTGTGAATTT 59.304 29.630 12.91 8.51 0.00 1.82
245 246 9.553418 CGAAACCAAAAAGATTTTGTGAATTTT 57.447 25.926 12.91 5.82 0.00 1.82
364 365 9.103861 TGTCTATACGTTCATAAAATTGATGCA 57.896 29.630 0.00 0.00 0.00 3.96
365 366 9.586150 GTCTATACGTTCATAAAATTGATGCAG 57.414 33.333 0.00 0.00 0.00 4.41
366 367 8.282592 TCTATACGTTCATAAAATTGATGCAGC 58.717 33.333 0.00 0.00 0.00 5.25
367 368 4.423732 ACGTTCATAAAATTGATGCAGCC 58.576 39.130 0.00 0.00 0.00 4.85
368 369 3.483196 CGTTCATAAAATTGATGCAGCCG 59.517 43.478 0.00 0.00 0.00 5.52
369 370 4.423732 GTTCATAAAATTGATGCAGCCGT 58.576 39.130 0.00 0.00 0.00 5.68
370 371 4.031418 TCATAAAATTGATGCAGCCGTG 57.969 40.909 0.00 0.00 0.00 4.94
371 372 3.443329 TCATAAAATTGATGCAGCCGTGT 59.557 39.130 0.00 0.00 0.00 4.49
372 373 2.068837 AAAATTGATGCAGCCGTGTG 57.931 45.000 0.00 0.00 0.00 3.82
373 374 0.961019 AAATTGATGCAGCCGTGTGT 59.039 45.000 0.00 0.00 0.00 3.72
374 375 0.241749 AATTGATGCAGCCGTGTGTG 59.758 50.000 0.00 0.00 0.00 3.82
375 376 2.203972 ATTGATGCAGCCGTGTGTGC 62.204 55.000 0.00 0.00 40.29 4.57
376 377 4.450122 GATGCAGCCGTGTGTGCG 62.450 66.667 0.00 0.00 42.96 5.34
379 380 4.666532 GCAGCCGTGTGTGCGTTC 62.667 66.667 0.00 0.00 0.00 3.95
380 381 4.012895 CAGCCGTGTGTGCGTTCC 62.013 66.667 0.00 0.00 0.00 3.62
494 495 4.467084 GATGCCGGCGGTCCTTGA 62.467 66.667 28.82 0.49 0.00 3.02
495 496 3.757248 GATGCCGGCGGTCCTTGAT 62.757 63.158 28.82 6.65 0.00 2.57
496 497 4.776322 TGCCGGCGGTCCTTGATG 62.776 66.667 28.82 0.00 0.00 3.07
497 498 4.778143 GCCGGCGGTCCTTGATGT 62.778 66.667 28.82 0.00 0.00 3.06
498 499 2.819595 CCGGCGGTCCTTGATGTG 60.820 66.667 19.97 0.00 0.00 3.21
499 500 2.047274 CGGCGGTCCTTGATGTGT 60.047 61.111 0.00 0.00 0.00 3.72
500 501 1.671054 CGGCGGTCCTTGATGTGTT 60.671 57.895 0.00 0.00 0.00 3.32
501 502 1.234615 CGGCGGTCCTTGATGTGTTT 61.235 55.000 0.00 0.00 0.00 2.83
502 503 0.240945 GGCGGTCCTTGATGTGTTTG 59.759 55.000 0.00 0.00 0.00 2.93
503 504 1.234821 GCGGTCCTTGATGTGTTTGA 58.765 50.000 0.00 0.00 0.00 2.69
504 505 1.606668 GCGGTCCTTGATGTGTTTGAA 59.393 47.619 0.00 0.00 0.00 2.69
505 506 2.350772 GCGGTCCTTGATGTGTTTGAAG 60.351 50.000 0.00 0.00 0.00 3.02
506 507 3.138304 CGGTCCTTGATGTGTTTGAAGA 58.862 45.455 0.00 0.00 0.00 2.87
507 508 3.563808 CGGTCCTTGATGTGTTTGAAGAA 59.436 43.478 0.00 0.00 0.00 2.52
508 509 4.036262 CGGTCCTTGATGTGTTTGAAGAAA 59.964 41.667 0.00 0.00 0.00 2.52
509 510 5.278463 CGGTCCTTGATGTGTTTGAAGAAAT 60.278 40.000 0.00 0.00 0.00 2.17
510 511 5.922544 GGTCCTTGATGTGTTTGAAGAAATG 59.077 40.000 0.00 0.00 0.00 2.32
511 512 6.239008 GGTCCTTGATGTGTTTGAAGAAATGA 60.239 38.462 0.00 0.00 0.00 2.57
512 513 6.638468 GTCCTTGATGTGTTTGAAGAAATGAC 59.362 38.462 0.00 0.00 0.00 3.06
513 514 6.547141 TCCTTGATGTGTTTGAAGAAATGACT 59.453 34.615 0.00 0.00 0.00 3.41
514 515 6.639686 CCTTGATGTGTTTGAAGAAATGACTG 59.360 38.462 0.00 0.00 0.00 3.51
515 516 6.940831 TGATGTGTTTGAAGAAATGACTGA 57.059 33.333 0.00 0.00 0.00 3.41
516 517 6.962686 TGATGTGTTTGAAGAAATGACTGAG 58.037 36.000 0.00 0.00 0.00 3.35
517 518 5.173774 TGTGTTTGAAGAAATGACTGAGC 57.826 39.130 0.00 0.00 0.00 4.26
518 519 4.036734 TGTGTTTGAAGAAATGACTGAGCC 59.963 41.667 0.00 0.00 0.00 4.70
519 520 3.250762 TGTTTGAAGAAATGACTGAGCCG 59.749 43.478 0.00 0.00 0.00 5.52
520 521 3.401033 TTGAAGAAATGACTGAGCCGA 57.599 42.857 0.00 0.00 0.00 5.54
521 522 3.401033 TGAAGAAATGACTGAGCCGAA 57.599 42.857 0.00 0.00 0.00 4.30
522 523 3.329386 TGAAGAAATGACTGAGCCGAAG 58.671 45.455 0.00 0.00 0.00 3.79
523 524 3.006859 TGAAGAAATGACTGAGCCGAAGA 59.993 43.478 0.00 0.00 0.00 2.87
524 525 3.685139 AGAAATGACTGAGCCGAAGAA 57.315 42.857 0.00 0.00 0.00 2.52
525 526 4.213564 AGAAATGACTGAGCCGAAGAAT 57.786 40.909 0.00 0.00 0.00 2.40
526 527 5.344743 AGAAATGACTGAGCCGAAGAATA 57.655 39.130 0.00 0.00 0.00 1.75
527 528 5.923204 AGAAATGACTGAGCCGAAGAATAT 58.077 37.500 0.00 0.00 0.00 1.28
528 529 6.352516 AGAAATGACTGAGCCGAAGAATATT 58.647 36.000 0.00 0.00 0.00 1.28
529 530 6.825721 AGAAATGACTGAGCCGAAGAATATTT 59.174 34.615 0.00 0.00 0.00 1.40
530 531 5.998454 ATGACTGAGCCGAAGAATATTTG 57.002 39.130 0.00 0.00 0.00 2.32
531 532 4.191544 TGACTGAGCCGAAGAATATTTGG 58.808 43.478 0.00 0.00 0.00 3.28
532 533 3.545703 ACTGAGCCGAAGAATATTTGGG 58.454 45.455 0.00 0.00 0.00 4.12
533 534 3.199946 ACTGAGCCGAAGAATATTTGGGA 59.800 43.478 0.00 0.00 0.00 4.37
534 535 4.141390 ACTGAGCCGAAGAATATTTGGGAT 60.141 41.667 0.00 0.00 0.00 3.85
535 536 4.136796 TGAGCCGAAGAATATTTGGGATG 58.863 43.478 0.00 0.00 0.00 3.51
536 537 3.490348 AGCCGAAGAATATTTGGGATGG 58.510 45.455 0.00 0.00 0.00 3.51
537 538 2.558359 GCCGAAGAATATTTGGGATGGG 59.442 50.000 0.00 0.00 0.00 4.00
538 539 3.832527 CCGAAGAATATTTGGGATGGGT 58.167 45.455 0.00 0.00 0.00 4.51
539 540 3.569701 CCGAAGAATATTTGGGATGGGTG 59.430 47.826 0.00 0.00 0.00 4.61
540 541 4.207165 CGAAGAATATTTGGGATGGGTGT 58.793 43.478 0.00 0.00 0.00 4.16
541 542 4.036734 CGAAGAATATTTGGGATGGGTGTG 59.963 45.833 0.00 0.00 0.00 3.82
542 543 3.299503 AGAATATTTGGGATGGGTGTGC 58.700 45.455 0.00 0.00 0.00 4.57
543 544 3.052642 AGAATATTTGGGATGGGTGTGCT 60.053 43.478 0.00 0.00 0.00 4.40
544 545 2.142356 TATTTGGGATGGGTGTGCTG 57.858 50.000 0.00 0.00 0.00 4.41
545 546 1.259840 ATTTGGGATGGGTGTGCTGC 61.260 55.000 0.00 0.00 0.00 5.25
546 547 4.720902 TGGGATGGGTGTGCTGCG 62.721 66.667 0.00 0.00 0.00 5.18
547 548 4.722700 GGGATGGGTGTGCTGCGT 62.723 66.667 0.00 0.00 0.00 5.24
548 549 2.672996 GGATGGGTGTGCTGCGTT 60.673 61.111 0.00 0.00 0.00 4.84
549 550 2.562912 GATGGGTGTGCTGCGTTG 59.437 61.111 0.00 0.00 0.00 4.10
550 551 2.981560 GATGGGTGTGCTGCGTTGG 61.982 63.158 0.00 0.00 0.00 3.77
551 552 3.490031 ATGGGTGTGCTGCGTTGGA 62.490 57.895 0.00 0.00 0.00 3.53
552 553 3.660111 GGGTGTGCTGCGTTGGAC 61.660 66.667 0.00 0.00 0.00 4.02
553 554 4.012895 GGTGTGCTGCGTTGGACG 62.013 66.667 0.00 0.00 45.88 4.79
575 576 3.196648 GCCGACGCCAATCCAAAT 58.803 55.556 0.00 0.00 0.00 2.32
576 577 1.510844 GCCGACGCCAATCCAAATT 59.489 52.632 0.00 0.00 0.00 1.82
577 578 0.801836 GCCGACGCCAATCCAAATTG 60.802 55.000 0.00 0.00 41.69 2.32
588 589 2.350057 TCCAAATTGGACGGACACAA 57.650 45.000 11.23 0.00 42.67 3.33
589 590 1.950909 TCCAAATTGGACGGACACAAC 59.049 47.619 11.23 0.00 42.67 3.32
590 591 1.953686 CCAAATTGGACGGACACAACT 59.046 47.619 6.04 0.00 40.96 3.16
591 592 2.031157 CCAAATTGGACGGACACAACTC 60.031 50.000 6.04 0.00 40.96 3.01
592 593 1.892209 AATTGGACGGACACAACTCC 58.108 50.000 0.00 0.00 0.00 3.85
593 594 0.762418 ATTGGACGGACACAACTCCA 59.238 50.000 0.00 0.00 0.00 3.86
594 595 0.762418 TTGGACGGACACAACTCCAT 59.238 50.000 0.00 0.00 32.75 3.41
595 596 0.762418 TGGACGGACACAACTCCATT 59.238 50.000 0.00 0.00 0.00 3.16
596 597 1.156736 GGACGGACACAACTCCATTG 58.843 55.000 0.00 0.00 44.60 2.82
597 598 1.270625 GGACGGACACAACTCCATTGA 60.271 52.381 0.00 0.00 41.23 2.57
598 599 1.798813 GACGGACACAACTCCATTGAC 59.201 52.381 0.00 0.00 41.23 3.18
599 600 1.140052 ACGGACACAACTCCATTGACA 59.860 47.619 0.00 0.00 41.23 3.58
600 601 1.531149 CGGACACAACTCCATTGACAC 59.469 52.381 0.00 0.00 41.23 3.67
601 602 1.880027 GGACACAACTCCATTGACACC 59.120 52.381 0.00 0.00 41.23 4.16
602 603 1.880027 GACACAACTCCATTGACACCC 59.120 52.381 0.00 0.00 41.23 4.61
603 604 1.494721 ACACAACTCCATTGACACCCT 59.505 47.619 0.00 0.00 41.23 4.34
604 605 2.154462 CACAACTCCATTGACACCCTC 58.846 52.381 0.00 0.00 41.23 4.30
605 606 1.774254 ACAACTCCATTGACACCCTCA 59.226 47.619 0.00 0.00 41.23 3.86
606 607 2.174639 ACAACTCCATTGACACCCTCAA 59.825 45.455 0.00 0.00 43.28 3.02
607 608 3.221771 CAACTCCATTGACACCCTCAAA 58.778 45.455 0.00 0.00 42.37 2.69
608 609 3.814504 ACTCCATTGACACCCTCAAAT 57.185 42.857 0.00 0.00 42.37 2.32
609 610 3.424703 ACTCCATTGACACCCTCAAATG 58.575 45.455 0.00 0.00 42.37 2.32
610 611 2.756760 CTCCATTGACACCCTCAAATGG 59.243 50.000 6.89 6.89 42.37 3.16
611 612 2.378208 TCCATTGACACCCTCAAATGGA 59.622 45.455 11.03 11.03 42.37 3.41
612 613 2.493278 CCATTGACACCCTCAAATGGAC 59.507 50.000 7.36 0.00 42.37 4.02
613 614 2.286365 TTGACACCCTCAAATGGACC 57.714 50.000 0.00 0.00 35.84 4.46
614 615 1.144691 TGACACCCTCAAATGGACCA 58.855 50.000 0.00 0.00 0.00 4.02
615 616 1.496857 TGACACCCTCAAATGGACCAA 59.503 47.619 0.00 0.00 0.00 3.67
616 617 2.091610 TGACACCCTCAAATGGACCAAA 60.092 45.455 0.00 0.00 0.00 3.28
617 618 3.165071 GACACCCTCAAATGGACCAAAT 58.835 45.455 0.00 0.00 0.00 2.32
618 619 3.578282 GACACCCTCAAATGGACCAAATT 59.422 43.478 0.00 0.00 0.00 1.82
619 620 3.578282 ACACCCTCAAATGGACCAAATTC 59.422 43.478 0.00 0.00 0.00 2.17
620 621 2.825532 ACCCTCAAATGGACCAAATTCG 59.174 45.455 0.00 0.00 0.00 3.34
621 622 3.088532 CCCTCAAATGGACCAAATTCGA 58.911 45.455 0.00 0.00 0.00 3.71
622 623 3.509575 CCCTCAAATGGACCAAATTCGAA 59.490 43.478 0.00 0.00 0.00 3.71
623 624 4.160252 CCCTCAAATGGACCAAATTCGAAT 59.840 41.667 4.39 4.39 0.00 3.34
624 625 5.359576 CCCTCAAATGGACCAAATTCGAATA 59.640 40.000 11.83 0.00 0.00 1.75
625 626 6.127479 CCCTCAAATGGACCAAATTCGAATAA 60.127 38.462 11.83 0.00 0.00 1.40
626 627 7.319646 CCTCAAATGGACCAAATTCGAATAAA 58.680 34.615 11.83 0.00 0.00 1.40
627 628 7.816995 CCTCAAATGGACCAAATTCGAATAAAA 59.183 33.333 11.83 0.00 0.00 1.52
628 629 8.527567 TCAAATGGACCAAATTCGAATAAAAC 57.472 30.769 11.83 2.78 0.00 2.43
629 630 8.144478 TCAAATGGACCAAATTCGAATAAAACA 58.856 29.630 11.83 6.83 0.00 2.83
630 631 8.434661 CAAATGGACCAAATTCGAATAAAACAG 58.565 33.333 11.83 0.43 0.00 3.16
631 632 6.885952 TGGACCAAATTCGAATAAAACAGA 57.114 33.333 11.83 0.00 0.00 3.41
632 633 6.674066 TGGACCAAATTCGAATAAAACAGAC 58.326 36.000 11.83 0.00 0.00 3.51
633 634 5.793457 GGACCAAATTCGAATAAAACAGACG 59.207 40.000 11.83 0.00 0.00 4.18
634 635 5.151389 ACCAAATTCGAATAAAACAGACGC 58.849 37.500 11.83 0.00 0.00 5.19
635 636 5.150683 CCAAATTCGAATAAAACAGACGCA 58.849 37.500 11.83 0.00 0.00 5.24
636 637 5.799936 CCAAATTCGAATAAAACAGACGCAT 59.200 36.000 11.83 0.00 0.00 4.73
637 638 6.307800 CCAAATTCGAATAAAACAGACGCATT 59.692 34.615 11.83 0.00 0.00 3.56
638 639 7.148820 CCAAATTCGAATAAAACAGACGCATTT 60.149 33.333 11.83 0.00 32.48 2.32
639 640 6.853279 ATTCGAATAAAACAGACGCATTTG 57.147 33.333 9.39 0.00 0.00 2.32
640 641 4.717991 TCGAATAAAACAGACGCATTTGG 58.282 39.130 0.00 0.00 0.00 3.28
641 642 3.851403 CGAATAAAACAGACGCATTTGGG 59.149 43.478 0.00 0.00 0.00 4.12
642 643 3.866883 ATAAAACAGACGCATTTGGGG 57.133 42.857 0.00 0.00 0.00 4.96
643 644 1.408969 AAAACAGACGCATTTGGGGT 58.591 45.000 0.00 0.00 46.65 4.95
648 649 3.361977 ACGCATTTGGGGTCGTGC 61.362 61.111 0.00 0.00 38.46 5.34
650 651 4.114997 GCATTTGGGGTCGTGCGG 62.115 66.667 0.00 0.00 0.00 5.69
651 652 2.671619 CATTTGGGGTCGTGCGGT 60.672 61.111 0.00 0.00 0.00 5.68
652 653 2.671619 ATTTGGGGTCGTGCGGTG 60.672 61.111 0.00 0.00 0.00 4.94
653 654 3.185299 ATTTGGGGTCGTGCGGTGA 62.185 57.895 0.00 0.00 0.00 4.02
654 655 2.684192 ATTTGGGGTCGTGCGGTGAA 62.684 55.000 0.00 0.00 0.00 3.18
655 656 3.818121 TTGGGGTCGTGCGGTGAAG 62.818 63.158 0.00 0.00 0.00 3.02
656 657 4.309950 GGGGTCGTGCGGTGAAGT 62.310 66.667 0.00 0.00 0.00 3.01
657 658 2.280592 GGGTCGTGCGGTGAAGTT 60.281 61.111 0.00 0.00 0.00 2.66
658 659 2.604174 GGGTCGTGCGGTGAAGTTG 61.604 63.158 0.00 0.00 0.00 3.16
659 660 2.604174 GGTCGTGCGGTGAAGTTGG 61.604 63.158 0.00 0.00 0.00 3.77
660 661 2.970324 TCGTGCGGTGAAGTTGGC 60.970 61.111 0.00 0.00 0.00 4.52
661 662 2.972505 CGTGCGGTGAAGTTGGCT 60.973 61.111 0.00 0.00 0.00 4.75
662 663 2.946762 GTGCGGTGAAGTTGGCTC 59.053 61.111 0.00 0.00 0.00 4.70
668 669 1.149148 GGTGAAGTTGGCTCGAAGAC 58.851 55.000 0.00 0.00 0.00 3.01
677 678 1.014564 GGCTCGAAGACCACCGAAAG 61.015 60.000 0.00 0.00 34.17 2.62
678 679 1.627550 GCTCGAAGACCACCGAAAGC 61.628 60.000 0.00 0.00 34.17 3.51
679 680 0.038159 CTCGAAGACCACCGAAAGCT 60.038 55.000 0.00 0.00 34.17 3.74
680 681 0.391597 TCGAAGACCACCGAAAGCTT 59.608 50.000 0.00 0.00 0.00 3.74
681 682 0.512952 CGAAGACCACCGAAAGCTTG 59.487 55.000 0.00 0.00 0.00 4.01
682 683 1.594331 GAAGACCACCGAAAGCTTGT 58.406 50.000 0.00 0.00 0.00 3.16
683 684 2.762745 GAAGACCACCGAAAGCTTGTA 58.237 47.619 0.00 0.00 0.00 2.41
684 685 2.165319 AGACCACCGAAAGCTTGTAC 57.835 50.000 0.00 0.00 0.00 2.90
685 686 1.692519 AGACCACCGAAAGCTTGTACT 59.307 47.619 0.00 0.00 0.00 2.73
692 695 3.243068 ACCGAAAGCTTGTACTGCAAAAG 60.243 43.478 0.00 0.72 36.53 2.27
699 702 4.798387 AGCTTGTACTGCAAAAGAAAAACG 59.202 37.500 12.49 0.00 36.53 3.60
708 711 3.000825 GCAAAAGAAAAACGCCGAAATGT 59.999 39.130 0.00 0.00 0.00 2.71
716 719 2.505498 CGCCGAAATGTCTCGACGG 61.505 63.158 4.17 4.17 40.41 4.79
725 728 1.229975 TGTCTCGACGGCTCGTACAA 61.230 55.000 0.00 0.00 41.37 2.41
736 739 3.127548 CGGCTCGTACAAAGTCTACCTAA 59.872 47.826 0.00 0.00 0.00 2.69
737 740 4.670347 GGCTCGTACAAAGTCTACCTAAG 58.330 47.826 0.00 0.00 0.00 2.18
738 741 4.104066 GCTCGTACAAAGTCTACCTAAGC 58.896 47.826 0.00 0.00 0.00 3.09
739 742 4.380233 GCTCGTACAAAGTCTACCTAAGCA 60.380 45.833 0.00 0.00 0.00 3.91
740 743 5.051891 TCGTACAAAGTCTACCTAAGCAC 57.948 43.478 0.00 0.00 0.00 4.40
741 744 4.763793 TCGTACAAAGTCTACCTAAGCACT 59.236 41.667 0.00 0.00 0.00 4.40
756 759 2.290464 AGCACTACTACTACCGCTCAG 58.710 52.381 0.00 0.00 0.00 3.35
804 807 0.326264 AGGCTGCAAACTCGAATCCT 59.674 50.000 0.50 0.00 0.00 3.24
1299 1620 2.182030 GACCTCCGCTTCCAGTCG 59.818 66.667 0.00 0.00 0.00 4.18
1308 1629 4.351938 TTCCAGTCGTCCGCCGTG 62.352 66.667 0.00 0.00 37.94 4.94
1469 1790 2.125147 TCTGTATGCGCCCTGTGC 60.125 61.111 4.18 0.00 39.75 4.57
1500 1821 6.115446 CACCTGAATCCTGCTAGATGTTTAA 58.885 40.000 0.00 0.00 0.00 1.52
1501 1822 6.769822 CACCTGAATCCTGCTAGATGTTTAAT 59.230 38.462 0.00 0.00 0.00 1.40
1523 1844 4.035612 ACTCTGTAGTTGTCTGCTCCTA 57.964 45.455 0.00 0.00 29.00 2.94
1533 1854 5.594317 AGTTGTCTGCTCCTATTGTTGTTTT 59.406 36.000 0.00 0.00 0.00 2.43
1536 1857 3.751175 TCTGCTCCTATTGTTGTTTTCCG 59.249 43.478 0.00 0.00 0.00 4.30
1538 1859 3.886505 TGCTCCTATTGTTGTTTTCCGTT 59.113 39.130 0.00 0.00 0.00 4.44
1545 1866 7.282675 TCCTATTGTTGTTTTCCGTTCTTGTAA 59.717 33.333 0.00 0.00 0.00 2.41
1691 2083 2.202987 CTGCGATCTGGGAGTGCC 60.203 66.667 0.00 0.00 0.00 5.01
1749 2141 3.305131 GGAAATTCCGTTGTTGGGTTCTC 60.305 47.826 0.00 0.00 0.00 2.87
1974 2444 4.000331 ACCATGAGTACTATGCATGCTC 58.000 45.455 20.33 11.65 38.40 4.26
1977 2447 4.502777 CCATGAGTACTATGCATGCTCTGT 60.503 45.833 20.33 15.80 38.40 3.41
2042 2531 3.650281 TTGATGCTCATACCATGGTGT 57.350 42.857 28.17 18.96 0.00 4.16
2053 2542 2.795329 ACCATGGTGTTGAATCTGTCC 58.205 47.619 18.99 0.00 0.00 4.02
2054 2543 2.376518 ACCATGGTGTTGAATCTGTCCT 59.623 45.455 18.99 0.00 0.00 3.85
2061 2550 4.246458 GTGTTGAATCTGTCCTCAGGTAC 58.754 47.826 0.00 0.00 41.59 3.34
2064 2553 3.162666 TGAATCTGTCCTCAGGTACGTT 58.837 45.455 0.00 0.00 41.59 3.99
2069 2558 3.640029 TCTGTCCTCAGGTACGTTCTTTT 59.360 43.478 0.00 0.00 41.59 2.27
2101 2672 4.997565 TGCAAAATCATGGTAAGCTAAGC 58.002 39.130 0.00 0.00 0.00 3.09
2138 2709 4.289672 TCAGTCTAATGCTCCCTTTCCTTT 59.710 41.667 0.00 0.00 0.00 3.11
2179 2750 2.755103 GGATTTGTTCAGGCGAGGATTT 59.245 45.455 0.00 0.00 0.00 2.17
2189 2760 1.475034 GGCGAGGATTTGTAGGCATCA 60.475 52.381 0.00 0.00 0.00 3.07
2205 2776 5.198965 AGGCATCAAAAGATCTTACAGCAT 58.801 37.500 8.75 4.21 0.00 3.79
2302 2873 3.932710 CTCTGGCTTGAGCGTATTGTAAA 59.067 43.478 0.00 0.00 43.26 2.01
2303 2874 4.320023 TCTGGCTTGAGCGTATTGTAAAA 58.680 39.130 0.00 0.00 43.26 1.52
2304 2875 4.941263 TCTGGCTTGAGCGTATTGTAAAAT 59.059 37.500 0.00 0.00 43.26 1.82
2347 2921 7.038799 TGGCATCTCTTTATCTGATAGCATGTA 60.039 37.037 0.00 0.00 0.00 2.29
2461 3035 4.511527 TGTTTGTTCCAATGTTGCATGTT 58.488 34.783 0.00 0.00 0.00 2.71
2548 3122 1.224069 GAGCTTCACGAACAGCTGCA 61.224 55.000 15.27 0.00 46.72 4.41
2554 3128 1.599071 TCACGAACAGCTGCAAAAGAG 59.401 47.619 15.27 0.96 0.00 2.85
2573 3147 1.701847 AGAGGTTTGCTCACATGGACT 59.298 47.619 0.00 0.00 0.00 3.85
2585 3159 5.587844 GCTCACATGGACTGACAAATATCTT 59.412 40.000 0.00 0.00 0.00 2.40
2587 3161 7.254590 GCTCACATGGACTGACAAATATCTTAC 60.255 40.741 0.00 0.00 0.00 2.34
2618 3192 5.007626 TGTTTTGCCGTGATGCTCTATTATC 59.992 40.000 0.00 0.00 0.00 1.75
2646 3220 0.467290 ACACTGTTTTCCCATGCGGT 60.467 50.000 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.905713 ATTTGTGTGTAGTATCTATGGAATGTT 57.094 29.630 0.00 0.00 0.00 2.71
1 2 9.905713 AATTTGTGTGTAGTATCTATGGAATGT 57.094 29.630 0.00 0.00 0.00 2.71
4 5 9.952030 TCAAATTTGTGTGTAGTATCTATGGAA 57.048 29.630 17.47 0.00 0.00 3.53
5 6 9.952030 TTCAAATTTGTGTGTAGTATCTATGGA 57.048 29.630 17.47 0.00 0.00 3.41
6 7 9.988350 GTTCAAATTTGTGTGTAGTATCTATGG 57.012 33.333 17.47 0.00 0.00 2.74
7 8 9.988350 GGTTCAAATTTGTGTGTAGTATCTATG 57.012 33.333 17.47 0.00 0.00 2.23
8 9 9.733556 TGGTTCAAATTTGTGTGTAGTATCTAT 57.266 29.630 17.47 0.00 0.00 1.98
9 10 9.733556 ATGGTTCAAATTTGTGTGTAGTATCTA 57.266 29.630 17.47 0.00 0.00 1.98
10 11 8.635765 ATGGTTCAAATTTGTGTGTAGTATCT 57.364 30.769 17.47 0.00 0.00 1.98
11 12 9.341899 GAATGGTTCAAATTTGTGTGTAGTATC 57.658 33.333 17.47 4.09 0.00 2.24
12 13 8.303876 GGAATGGTTCAAATTTGTGTGTAGTAT 58.696 33.333 17.47 1.58 0.00 2.12
13 14 7.285629 TGGAATGGTTCAAATTTGTGTGTAGTA 59.714 33.333 17.47 0.00 0.00 1.82
14 15 6.097554 TGGAATGGTTCAAATTTGTGTGTAGT 59.902 34.615 17.47 2.19 0.00 2.73
15 16 6.511416 TGGAATGGTTCAAATTTGTGTGTAG 58.489 36.000 17.47 0.00 0.00 2.74
16 17 6.471233 TGGAATGGTTCAAATTTGTGTGTA 57.529 33.333 17.47 3.27 0.00 2.90
17 18 5.350504 TGGAATGGTTCAAATTTGTGTGT 57.649 34.783 17.47 0.53 0.00 3.72
18 19 6.346758 CGATTGGAATGGTTCAAATTTGTGTG 60.347 38.462 17.47 0.00 33.49 3.82
19 20 5.695816 CGATTGGAATGGTTCAAATTTGTGT 59.304 36.000 17.47 0.00 33.49 3.72
20 21 5.389725 GCGATTGGAATGGTTCAAATTTGTG 60.390 40.000 17.47 0.00 33.49 3.33
21 22 4.690280 GCGATTGGAATGGTTCAAATTTGT 59.310 37.500 17.47 0.00 33.49 2.83
22 23 4.931002 AGCGATTGGAATGGTTCAAATTTG 59.069 37.500 12.15 12.15 33.49 2.32
23 24 5.151297 AGCGATTGGAATGGTTCAAATTT 57.849 34.783 0.00 0.00 33.49 1.82
24 25 4.806640 AGCGATTGGAATGGTTCAAATT 57.193 36.364 0.00 0.00 33.49 1.82
25 26 5.913137 TTAGCGATTGGAATGGTTCAAAT 57.087 34.783 0.00 0.00 36.02 2.32
26 27 5.713792 TTTAGCGATTGGAATGGTTCAAA 57.286 34.783 0.00 0.00 0.00 2.69
27 28 5.417266 TGATTTAGCGATTGGAATGGTTCAA 59.583 36.000 0.00 0.00 0.00 2.69
28 29 4.946772 TGATTTAGCGATTGGAATGGTTCA 59.053 37.500 0.00 0.00 0.00 3.18
29 30 5.499139 TGATTTAGCGATTGGAATGGTTC 57.501 39.130 0.00 0.00 0.00 3.62
30 31 6.469782 AATGATTTAGCGATTGGAATGGTT 57.530 33.333 0.00 0.00 0.00 3.67
31 32 6.096705 TGAAATGATTTAGCGATTGGAATGGT 59.903 34.615 0.00 0.00 0.00 3.55
32 33 6.418819 GTGAAATGATTTAGCGATTGGAATGG 59.581 38.462 0.00 0.00 0.00 3.16
33 34 6.974048 TGTGAAATGATTTAGCGATTGGAATG 59.026 34.615 0.00 0.00 0.00 2.67
34 35 7.099266 TGTGAAATGATTTAGCGATTGGAAT 57.901 32.000 0.00 0.00 0.00 3.01
35 36 6.507958 TGTGAAATGATTTAGCGATTGGAA 57.492 33.333 0.00 0.00 0.00 3.53
36 37 6.698008 ATGTGAAATGATTTAGCGATTGGA 57.302 33.333 0.00 0.00 0.00 3.53
37 38 8.509690 AGATATGTGAAATGATTTAGCGATTGG 58.490 33.333 0.00 0.00 0.00 3.16
38 39 9.888878 AAGATATGTGAAATGATTTAGCGATTG 57.111 29.630 0.00 0.00 0.00 2.67
39 40 9.888878 CAAGATATGTGAAATGATTTAGCGATT 57.111 29.630 0.00 0.00 0.00 3.34
40 41 9.276590 TCAAGATATGTGAAATGATTTAGCGAT 57.723 29.630 0.00 0.00 0.00 4.58
41 42 8.551205 GTCAAGATATGTGAAATGATTTAGCGA 58.449 33.333 0.00 0.00 0.00 4.93
42 43 8.337532 TGTCAAGATATGTGAAATGATTTAGCG 58.662 33.333 0.00 0.00 0.00 4.26
43 44 9.443283 GTGTCAAGATATGTGAAATGATTTAGC 57.557 33.333 0.00 0.00 0.00 3.09
77 78 9.246670 TGAAATTGATTGGATGTGACTATTTCT 57.753 29.630 0.00 0.00 35.50 2.52
79 80 9.811995 CATGAAATTGATTGGATGTGACTATTT 57.188 29.630 0.00 0.00 0.00 1.40
80 81 9.192642 TCATGAAATTGATTGGATGTGACTATT 57.807 29.630 0.00 0.00 0.00 1.73
81 82 8.756486 TCATGAAATTGATTGGATGTGACTAT 57.244 30.769 0.00 0.00 0.00 2.12
82 83 8.578448 TTCATGAAATTGATTGGATGTGACTA 57.422 30.769 5.45 0.00 0.00 2.59
83 84 7.470935 TTCATGAAATTGATTGGATGTGACT 57.529 32.000 5.45 0.00 0.00 3.41
84 85 8.712285 AATTCATGAAATTGATTGGATGTGAC 57.288 30.769 13.09 0.00 36.20 3.67
85 86 9.157104 CAAATTCATGAAATTGATTGGATGTGA 57.843 29.630 25.58 0.00 37.64 3.58
86 87 9.157104 TCAAATTCATGAAATTGATTGGATGTG 57.843 29.630 27.43 8.16 35.85 3.21
87 88 9.899661 ATCAAATTCATGAAATTGATTGGATGT 57.100 25.926 32.22 18.11 44.19 3.06
109 110 8.550280 TGATGGGGATGATTTGAAATAATCAA 57.450 30.769 15.34 3.20 44.96 2.57
110 111 8.730093 ATGATGGGGATGATTTGAAATAATCA 57.270 30.769 15.34 0.39 45.64 2.57
112 113 9.604569 TGTATGATGGGGATGATTTGAAATAAT 57.395 29.630 0.00 0.00 0.00 1.28
113 114 8.859090 GTGTATGATGGGGATGATTTGAAATAA 58.141 33.333 0.00 0.00 0.00 1.40
114 115 7.451255 GGTGTATGATGGGGATGATTTGAAATA 59.549 37.037 0.00 0.00 0.00 1.40
115 116 6.268387 GGTGTATGATGGGGATGATTTGAAAT 59.732 38.462 0.00 0.00 0.00 2.17
116 117 5.598005 GGTGTATGATGGGGATGATTTGAAA 59.402 40.000 0.00 0.00 0.00 2.69
117 118 5.139727 GGTGTATGATGGGGATGATTTGAA 58.860 41.667 0.00 0.00 0.00 2.69
118 119 4.167697 TGGTGTATGATGGGGATGATTTGA 59.832 41.667 0.00 0.00 0.00 2.69
119 120 4.472496 TGGTGTATGATGGGGATGATTTG 58.528 43.478 0.00 0.00 0.00 2.32
120 121 4.812403 TGGTGTATGATGGGGATGATTT 57.188 40.909 0.00 0.00 0.00 2.17
121 122 4.812403 TTGGTGTATGATGGGGATGATT 57.188 40.909 0.00 0.00 0.00 2.57
122 123 5.343833 AATTGGTGTATGATGGGGATGAT 57.656 39.130 0.00 0.00 0.00 2.45
123 124 4.812403 AATTGGTGTATGATGGGGATGA 57.188 40.909 0.00 0.00 0.00 2.92
124 125 6.975196 TTTAATTGGTGTATGATGGGGATG 57.025 37.500 0.00 0.00 0.00 3.51
125 126 9.312904 CTAATTTAATTGGTGTATGATGGGGAT 57.687 33.333 0.00 0.00 0.00 3.85
126 127 8.285891 ACTAATTTAATTGGTGTATGATGGGGA 58.714 33.333 5.90 0.00 32.40 4.81
127 128 8.477419 ACTAATTTAATTGGTGTATGATGGGG 57.523 34.615 5.90 0.00 32.40 4.96
168 169 9.993454 TTCAAATGTGATTCCAATGTAATTTCA 57.007 25.926 0.00 0.00 29.98 2.69
172 173 9.865321 CTCTTTCAAATGTGATTCCAATGTAAT 57.135 29.630 0.00 0.00 32.48 1.89
173 174 8.306038 CCTCTTTCAAATGTGATTCCAATGTAA 58.694 33.333 0.00 0.00 32.48 2.41
174 175 7.669304 TCCTCTTTCAAATGTGATTCCAATGTA 59.331 33.333 0.00 0.00 32.48 2.29
175 176 6.494491 TCCTCTTTCAAATGTGATTCCAATGT 59.506 34.615 0.00 0.00 32.48 2.71
176 177 6.927416 TCCTCTTTCAAATGTGATTCCAATG 58.073 36.000 0.00 0.00 32.48 2.82
177 178 7.543359 TTCCTCTTTCAAATGTGATTCCAAT 57.457 32.000 0.00 0.00 32.48 3.16
178 179 6.517194 GCTTCCTCTTTCAAATGTGATTCCAA 60.517 38.462 0.00 0.00 32.48 3.53
179 180 5.047802 GCTTCCTCTTTCAAATGTGATTCCA 60.048 40.000 0.00 0.00 32.48 3.53
180 181 5.047802 TGCTTCCTCTTTCAAATGTGATTCC 60.048 40.000 0.00 0.00 32.48 3.01
181 182 5.860716 GTGCTTCCTCTTTCAAATGTGATTC 59.139 40.000 0.00 0.00 32.48 2.52
182 183 5.537674 AGTGCTTCCTCTTTCAAATGTGATT 59.462 36.000 0.00 0.00 32.48 2.57
183 184 5.075493 AGTGCTTCCTCTTTCAAATGTGAT 58.925 37.500 0.00 0.00 32.48 3.06
184 185 4.464008 AGTGCTTCCTCTTTCAAATGTGA 58.536 39.130 0.00 0.00 0.00 3.58
185 186 4.843220 AGTGCTTCCTCTTTCAAATGTG 57.157 40.909 0.00 0.00 0.00 3.21
186 187 4.646492 ACAAGTGCTTCCTCTTTCAAATGT 59.354 37.500 0.00 0.00 0.00 2.71
187 188 5.192327 ACAAGTGCTTCCTCTTTCAAATG 57.808 39.130 0.00 0.00 0.00 2.32
188 189 5.360714 TGAACAAGTGCTTCCTCTTTCAAAT 59.639 36.000 0.00 0.00 0.00 2.32
189 190 4.704540 TGAACAAGTGCTTCCTCTTTCAAA 59.295 37.500 0.00 0.00 0.00 2.69
190 191 4.096382 GTGAACAAGTGCTTCCTCTTTCAA 59.904 41.667 0.00 0.00 0.00 2.69
191 192 3.627577 GTGAACAAGTGCTTCCTCTTTCA 59.372 43.478 0.00 0.00 0.00 2.69
192 193 3.627577 TGTGAACAAGTGCTTCCTCTTTC 59.372 43.478 0.00 0.00 0.00 2.62
193 194 3.620488 TGTGAACAAGTGCTTCCTCTTT 58.380 40.909 0.00 0.00 0.00 2.52
194 195 3.281727 TGTGAACAAGTGCTTCCTCTT 57.718 42.857 0.00 0.00 0.00 2.85
195 196 2.945668 GTTGTGAACAAGTGCTTCCTCT 59.054 45.455 0.00 0.00 36.39 3.69
196 197 2.945668 AGTTGTGAACAAGTGCTTCCTC 59.054 45.455 2.74 0.00 38.04 3.71
197 198 2.684881 CAGTTGTGAACAAGTGCTTCCT 59.315 45.455 15.92 0.00 46.36 3.36
198 199 3.070429 CAGTTGTGAACAAGTGCTTCC 57.930 47.619 15.92 0.00 46.36 3.46
204 205 2.159435 GGTTTCGCAGTTGTGAACAAGT 60.159 45.455 7.56 0.00 43.34 3.16
205 206 2.159448 TGGTTTCGCAGTTGTGAACAAG 60.159 45.455 7.56 0.00 43.34 3.16
206 207 1.813178 TGGTTTCGCAGTTGTGAACAA 59.187 42.857 7.56 0.00 43.34 2.83
207 208 1.454201 TGGTTTCGCAGTTGTGAACA 58.546 45.000 7.56 1.87 43.34 3.18
208 209 2.553079 TTGGTTTCGCAGTTGTGAAC 57.447 45.000 7.56 4.19 43.34 3.18
209 210 3.577649 TTTTGGTTTCGCAGTTGTGAA 57.422 38.095 4.11 4.11 42.14 3.18
210 211 3.191581 TCTTTTTGGTTTCGCAGTTGTGA 59.808 39.130 0.00 0.00 0.00 3.58
211 212 3.506810 TCTTTTTGGTTTCGCAGTTGTG 58.493 40.909 0.00 0.00 0.00 3.33
212 213 3.859411 TCTTTTTGGTTTCGCAGTTGT 57.141 38.095 0.00 0.00 0.00 3.32
213 214 5.717038 AAATCTTTTTGGTTTCGCAGTTG 57.283 34.783 0.00 0.00 0.00 3.16
214 215 5.641636 ACAAAATCTTTTTGGTTTCGCAGTT 59.358 32.000 15.02 0.00 33.92 3.16
215 216 5.063312 CACAAAATCTTTTTGGTTTCGCAGT 59.937 36.000 15.02 0.00 33.92 4.40
216 217 5.290643 TCACAAAATCTTTTTGGTTTCGCAG 59.709 36.000 15.02 0.00 33.92 5.18
217 218 5.171476 TCACAAAATCTTTTTGGTTTCGCA 58.829 33.333 15.02 0.00 33.92 5.10
218 219 5.710613 TCACAAAATCTTTTTGGTTTCGC 57.289 34.783 15.02 0.00 33.92 4.70
219 220 9.553418 AAAATTCACAAAATCTTTTTGGTTTCG 57.447 25.926 15.02 1.75 33.92 3.46
338 339 9.103861 TGCATCAATTTTATGAACGTATAGACA 57.896 29.630 0.00 0.00 32.06 3.41
339 340 9.586150 CTGCATCAATTTTATGAACGTATAGAC 57.414 33.333 0.00 0.00 32.06 2.59
340 341 8.282592 GCTGCATCAATTTTATGAACGTATAGA 58.717 33.333 0.00 0.00 32.06 1.98
341 342 7.535258 GGCTGCATCAATTTTATGAACGTATAG 59.465 37.037 0.50 0.00 32.06 1.31
342 343 7.359595 GGCTGCATCAATTTTATGAACGTATA 58.640 34.615 0.50 0.00 32.06 1.47
343 344 6.208644 GGCTGCATCAATTTTATGAACGTAT 58.791 36.000 0.50 0.00 32.06 3.06
344 345 5.577835 GGCTGCATCAATTTTATGAACGTA 58.422 37.500 0.50 0.00 32.06 3.57
345 346 4.423732 GGCTGCATCAATTTTATGAACGT 58.576 39.130 0.50 0.00 32.06 3.99
346 347 3.483196 CGGCTGCATCAATTTTATGAACG 59.517 43.478 0.50 0.00 32.06 3.95
347 348 4.266029 CACGGCTGCATCAATTTTATGAAC 59.734 41.667 0.50 0.00 32.06 3.18
348 349 4.082300 ACACGGCTGCATCAATTTTATGAA 60.082 37.500 0.50 0.00 32.06 2.57
349 350 3.443329 ACACGGCTGCATCAATTTTATGA 59.557 39.130 0.50 0.00 0.00 2.15
350 351 3.548668 CACACGGCTGCATCAATTTTATG 59.451 43.478 0.50 0.00 0.00 1.90
351 352 3.193267 ACACACGGCTGCATCAATTTTAT 59.807 39.130 0.50 0.00 0.00 1.40
352 353 2.556189 ACACACGGCTGCATCAATTTTA 59.444 40.909 0.50 0.00 0.00 1.52
353 354 1.340889 ACACACGGCTGCATCAATTTT 59.659 42.857 0.50 0.00 0.00 1.82
354 355 0.961019 ACACACGGCTGCATCAATTT 59.039 45.000 0.50 0.00 0.00 1.82
355 356 0.241749 CACACACGGCTGCATCAATT 59.758 50.000 0.50 0.00 0.00 2.32
356 357 1.878070 CACACACGGCTGCATCAAT 59.122 52.632 0.50 0.00 0.00 2.57
357 358 2.906939 GCACACACGGCTGCATCAA 61.907 57.895 0.50 0.00 33.31 2.57
358 359 3.356267 GCACACACGGCTGCATCA 61.356 61.111 0.50 0.00 33.31 3.07
359 360 4.450122 CGCACACACGGCTGCATC 62.450 66.667 0.50 0.00 32.57 3.91
362 363 4.666532 GAACGCACACACGGCTGC 62.667 66.667 0.00 0.00 37.37 5.25
363 364 4.012895 GGAACGCACACACGGCTG 62.013 66.667 0.00 0.00 37.37 4.85
477 478 3.757248 ATCAAGGACCGCCGGCATC 62.757 63.158 28.98 22.60 39.96 3.91
478 479 3.797353 ATCAAGGACCGCCGGCAT 61.797 61.111 28.98 14.60 39.96 4.40
479 480 4.776322 CATCAAGGACCGCCGGCA 62.776 66.667 28.98 3.80 39.96 5.69
480 481 4.778143 ACATCAAGGACCGCCGGC 62.778 66.667 19.07 19.07 39.96 6.13
481 482 2.819595 CACATCAAGGACCGCCGG 60.820 66.667 0.00 0.00 39.96 6.13
482 483 1.234615 AAACACATCAAGGACCGCCG 61.235 55.000 0.00 0.00 39.96 6.46
483 484 0.240945 CAAACACATCAAGGACCGCC 59.759 55.000 0.00 0.00 0.00 6.13
484 485 1.234821 TCAAACACATCAAGGACCGC 58.765 50.000 0.00 0.00 0.00 5.68
485 486 3.138304 TCTTCAAACACATCAAGGACCG 58.862 45.455 0.00 0.00 0.00 4.79
486 487 5.514274 TTTCTTCAAACACATCAAGGACC 57.486 39.130 0.00 0.00 0.00 4.46
487 488 6.638468 GTCATTTCTTCAAACACATCAAGGAC 59.362 38.462 0.00 0.00 0.00 3.85
488 489 6.547141 AGTCATTTCTTCAAACACATCAAGGA 59.453 34.615 0.00 0.00 0.00 3.36
489 490 6.639686 CAGTCATTTCTTCAAACACATCAAGG 59.360 38.462 0.00 0.00 0.00 3.61
490 491 7.420002 TCAGTCATTTCTTCAAACACATCAAG 58.580 34.615 0.00 0.00 0.00 3.02
491 492 7.332213 TCAGTCATTTCTTCAAACACATCAA 57.668 32.000 0.00 0.00 0.00 2.57
492 493 6.513884 GCTCAGTCATTTCTTCAAACACATCA 60.514 38.462 0.00 0.00 0.00 3.07
493 494 5.855395 GCTCAGTCATTTCTTCAAACACATC 59.145 40.000 0.00 0.00 0.00 3.06
494 495 5.278660 GGCTCAGTCATTTCTTCAAACACAT 60.279 40.000 0.00 0.00 0.00 3.21
495 496 4.036734 GGCTCAGTCATTTCTTCAAACACA 59.963 41.667 0.00 0.00 0.00 3.72
496 497 4.540824 GGCTCAGTCATTTCTTCAAACAC 58.459 43.478 0.00 0.00 0.00 3.32
497 498 3.250762 CGGCTCAGTCATTTCTTCAAACA 59.749 43.478 0.00 0.00 0.00 2.83
498 499 3.498397 TCGGCTCAGTCATTTCTTCAAAC 59.502 43.478 0.00 0.00 0.00 2.93
499 500 3.738982 TCGGCTCAGTCATTTCTTCAAA 58.261 40.909 0.00 0.00 0.00 2.69
500 501 3.401033 TCGGCTCAGTCATTTCTTCAA 57.599 42.857 0.00 0.00 0.00 2.69
501 502 3.006859 TCTTCGGCTCAGTCATTTCTTCA 59.993 43.478 0.00 0.00 0.00 3.02
502 503 3.589988 TCTTCGGCTCAGTCATTTCTTC 58.410 45.455 0.00 0.00 0.00 2.87
503 504 3.685139 TCTTCGGCTCAGTCATTTCTT 57.315 42.857 0.00 0.00 0.00 2.52
504 505 3.685139 TTCTTCGGCTCAGTCATTTCT 57.315 42.857 0.00 0.00 0.00 2.52
505 506 6.610741 AATATTCTTCGGCTCAGTCATTTC 57.389 37.500 0.00 0.00 0.00 2.17
506 507 6.183360 CCAAATATTCTTCGGCTCAGTCATTT 60.183 38.462 0.00 0.00 0.00 2.32
507 508 5.297776 CCAAATATTCTTCGGCTCAGTCATT 59.702 40.000 0.00 0.00 0.00 2.57
508 509 4.818546 CCAAATATTCTTCGGCTCAGTCAT 59.181 41.667 0.00 0.00 0.00 3.06
509 510 4.191544 CCAAATATTCTTCGGCTCAGTCA 58.808 43.478 0.00 0.00 0.00 3.41
510 511 3.561725 CCCAAATATTCTTCGGCTCAGTC 59.438 47.826 0.00 0.00 0.00 3.51
511 512 3.199946 TCCCAAATATTCTTCGGCTCAGT 59.800 43.478 0.00 0.00 0.00 3.41
512 513 3.808728 TCCCAAATATTCTTCGGCTCAG 58.191 45.455 0.00 0.00 0.00 3.35
513 514 3.924114 TCCCAAATATTCTTCGGCTCA 57.076 42.857 0.00 0.00 0.00 4.26
514 515 3.503748 CCATCCCAAATATTCTTCGGCTC 59.496 47.826 0.00 0.00 0.00 4.70
515 516 3.490348 CCATCCCAAATATTCTTCGGCT 58.510 45.455 0.00 0.00 0.00 5.52
516 517 2.558359 CCCATCCCAAATATTCTTCGGC 59.442 50.000 0.00 0.00 0.00 5.54
517 518 3.569701 CACCCATCCCAAATATTCTTCGG 59.430 47.826 0.00 0.00 0.00 4.30
518 519 4.036734 CACACCCATCCCAAATATTCTTCG 59.963 45.833 0.00 0.00 0.00 3.79
519 520 4.202151 GCACACCCATCCCAAATATTCTTC 60.202 45.833 0.00 0.00 0.00 2.87
520 521 3.706086 GCACACCCATCCCAAATATTCTT 59.294 43.478 0.00 0.00 0.00 2.52
521 522 3.052642 AGCACACCCATCCCAAATATTCT 60.053 43.478 0.00 0.00 0.00 2.40
522 523 3.068590 CAGCACACCCATCCCAAATATTC 59.931 47.826 0.00 0.00 0.00 1.75
523 524 3.033184 CAGCACACCCATCCCAAATATT 58.967 45.455 0.00 0.00 0.00 1.28
524 525 2.669781 CAGCACACCCATCCCAAATAT 58.330 47.619 0.00 0.00 0.00 1.28
525 526 1.959508 GCAGCACACCCATCCCAAATA 60.960 52.381 0.00 0.00 0.00 1.40
526 527 1.259840 GCAGCACACCCATCCCAAAT 61.260 55.000 0.00 0.00 0.00 2.32
527 528 1.907807 GCAGCACACCCATCCCAAA 60.908 57.895 0.00 0.00 0.00 3.28
528 529 2.283101 GCAGCACACCCATCCCAA 60.283 61.111 0.00 0.00 0.00 4.12
529 530 4.720902 CGCAGCACACCCATCCCA 62.721 66.667 0.00 0.00 0.00 4.37
530 531 4.722700 ACGCAGCACACCCATCCC 62.723 66.667 0.00 0.00 0.00 3.85
531 532 2.672996 AACGCAGCACACCCATCC 60.673 61.111 0.00 0.00 0.00 3.51
532 533 2.562912 CAACGCAGCACACCCATC 59.437 61.111 0.00 0.00 0.00 3.51
533 534 2.985282 CCAACGCAGCACACCCAT 60.985 61.111 0.00 0.00 0.00 4.00
534 535 4.182433 TCCAACGCAGCACACCCA 62.182 61.111 0.00 0.00 0.00 4.51
535 536 3.660111 GTCCAACGCAGCACACCC 61.660 66.667 0.00 0.00 0.00 4.61
536 537 4.012895 CGTCCAACGCAGCACACC 62.013 66.667 0.00 0.00 33.65 4.16
558 559 0.801836 CAATTTGGATTGGCGTCGGC 60.802 55.000 12.58 12.58 39.17 5.54
559 560 3.327464 CAATTTGGATTGGCGTCGG 57.673 52.632 0.00 0.00 39.17 4.79
569 570 1.950909 GTTGTGTCCGTCCAATTTGGA 59.049 47.619 14.24 14.24 45.98 3.53
570 571 1.953686 AGTTGTGTCCGTCCAATTTGG 59.046 47.619 9.28 9.28 39.43 3.28
571 572 2.031157 GGAGTTGTGTCCGTCCAATTTG 60.031 50.000 0.00 0.00 0.00 2.32
572 573 2.227194 GGAGTTGTGTCCGTCCAATTT 58.773 47.619 0.00 0.00 0.00 1.82
573 574 1.142060 TGGAGTTGTGTCCGTCCAATT 59.858 47.619 0.00 0.00 39.81 2.32
574 575 0.762418 TGGAGTTGTGTCCGTCCAAT 59.238 50.000 0.00 0.00 39.81 3.16
575 576 0.762418 ATGGAGTTGTGTCCGTCCAA 59.238 50.000 0.00 0.00 42.35 3.53
576 577 0.762418 AATGGAGTTGTGTCCGTCCA 59.238 50.000 0.00 0.00 43.23 4.02
577 578 1.156736 CAATGGAGTTGTGTCCGTCC 58.843 55.000 0.00 0.00 39.81 4.79
578 579 1.798813 GTCAATGGAGTTGTGTCCGTC 59.201 52.381 0.00 0.00 39.81 4.79
579 580 1.140052 TGTCAATGGAGTTGTGTCCGT 59.860 47.619 0.00 0.00 39.81 4.69
580 581 1.531149 GTGTCAATGGAGTTGTGTCCG 59.469 52.381 0.00 0.00 39.81 4.79
581 582 1.880027 GGTGTCAATGGAGTTGTGTCC 59.120 52.381 0.00 0.00 38.95 4.02
582 583 1.880027 GGGTGTCAATGGAGTTGTGTC 59.120 52.381 0.00 0.00 38.95 3.67
583 584 1.494721 AGGGTGTCAATGGAGTTGTGT 59.505 47.619 0.00 0.00 38.95 3.72
584 585 2.154462 GAGGGTGTCAATGGAGTTGTG 58.846 52.381 0.00 0.00 38.95 3.33
585 586 1.774254 TGAGGGTGTCAATGGAGTTGT 59.226 47.619 0.00 0.00 38.95 3.32
586 587 2.566833 TGAGGGTGTCAATGGAGTTG 57.433 50.000 0.00 0.00 39.25 3.16
587 588 3.593442 TTTGAGGGTGTCAATGGAGTT 57.407 42.857 0.00 0.00 44.89 3.01
588 589 3.424703 CATTTGAGGGTGTCAATGGAGT 58.575 45.455 0.00 0.00 44.89 3.85
589 590 2.756760 CCATTTGAGGGTGTCAATGGAG 59.243 50.000 4.05 0.00 44.89 3.86
590 591 2.378208 TCCATTTGAGGGTGTCAATGGA 59.622 45.455 8.14 8.14 44.89 3.41
591 592 2.493278 GTCCATTTGAGGGTGTCAATGG 59.507 50.000 3.74 3.74 44.89 3.16
592 593 2.493278 GGTCCATTTGAGGGTGTCAATG 59.507 50.000 0.00 0.00 44.89 2.82
593 594 2.109834 TGGTCCATTTGAGGGTGTCAAT 59.890 45.455 0.00 0.00 44.89 2.57
594 595 1.496857 TGGTCCATTTGAGGGTGTCAA 59.503 47.619 0.00 0.00 43.82 3.18
595 596 1.144691 TGGTCCATTTGAGGGTGTCA 58.855 50.000 0.00 0.00 0.00 3.58
596 597 2.286365 TTGGTCCATTTGAGGGTGTC 57.714 50.000 0.00 0.00 0.00 3.67
597 598 2.765689 TTTGGTCCATTTGAGGGTGT 57.234 45.000 0.00 0.00 0.00 4.16
598 599 3.367292 CGAATTTGGTCCATTTGAGGGTG 60.367 47.826 0.00 0.00 0.00 4.61
599 600 2.825532 CGAATTTGGTCCATTTGAGGGT 59.174 45.455 0.00 0.00 0.00 4.34
600 601 3.088532 TCGAATTTGGTCCATTTGAGGG 58.911 45.455 0.00 0.00 0.00 4.30
601 602 4.782019 TTCGAATTTGGTCCATTTGAGG 57.218 40.909 0.00 0.00 0.00 3.86
602 603 8.647226 GTTTTATTCGAATTTGGTCCATTTGAG 58.353 33.333 17.19 0.00 0.00 3.02
603 604 8.144478 TGTTTTATTCGAATTTGGTCCATTTGA 58.856 29.630 17.19 0.00 0.00 2.69
604 605 8.304202 TGTTTTATTCGAATTTGGTCCATTTG 57.696 30.769 17.19 0.00 0.00 2.32
605 606 8.364142 TCTGTTTTATTCGAATTTGGTCCATTT 58.636 29.630 17.19 0.00 0.00 2.32
606 607 7.812669 GTCTGTTTTATTCGAATTTGGTCCATT 59.187 33.333 17.19 0.00 0.00 3.16
607 608 7.312899 GTCTGTTTTATTCGAATTTGGTCCAT 58.687 34.615 17.19 0.00 0.00 3.41
608 609 6.566942 CGTCTGTTTTATTCGAATTTGGTCCA 60.567 38.462 17.19 5.51 0.00 4.02
609 610 5.793457 CGTCTGTTTTATTCGAATTTGGTCC 59.207 40.000 17.19 1.06 0.00 4.46
610 611 5.283012 GCGTCTGTTTTATTCGAATTTGGTC 59.717 40.000 17.19 4.77 0.00 4.02
611 612 5.151389 GCGTCTGTTTTATTCGAATTTGGT 58.849 37.500 17.19 0.00 0.00 3.67
612 613 5.150683 TGCGTCTGTTTTATTCGAATTTGG 58.849 37.500 17.19 1.98 0.00 3.28
613 614 6.853279 ATGCGTCTGTTTTATTCGAATTTG 57.147 33.333 17.19 1.28 0.00 2.32
614 615 7.148820 CCAAATGCGTCTGTTTTATTCGAATTT 60.149 33.333 17.19 0.00 39.37 1.82
615 616 6.307800 CCAAATGCGTCTGTTTTATTCGAATT 59.692 34.615 17.19 0.54 32.18 2.17
616 617 5.799936 CCAAATGCGTCTGTTTTATTCGAAT 59.200 36.000 16.15 16.15 0.00 3.34
617 618 5.150683 CCAAATGCGTCTGTTTTATTCGAA 58.849 37.500 0.00 0.00 0.00 3.71
618 619 4.378978 CCCAAATGCGTCTGTTTTATTCGA 60.379 41.667 0.00 0.00 0.00 3.71
619 620 3.851403 CCCAAATGCGTCTGTTTTATTCG 59.149 43.478 0.00 0.00 0.00 3.34
620 621 4.173256 CCCCAAATGCGTCTGTTTTATTC 58.827 43.478 0.00 0.00 0.00 1.75
621 622 3.576550 ACCCCAAATGCGTCTGTTTTATT 59.423 39.130 0.00 0.00 0.00 1.40
622 623 3.161866 ACCCCAAATGCGTCTGTTTTAT 58.838 40.909 0.00 0.00 0.00 1.40
623 624 2.554893 GACCCCAAATGCGTCTGTTTTA 59.445 45.455 0.00 0.00 0.00 1.52
624 625 1.339929 GACCCCAAATGCGTCTGTTTT 59.660 47.619 0.00 0.00 0.00 2.43
625 626 0.958822 GACCCCAAATGCGTCTGTTT 59.041 50.000 0.00 0.00 0.00 2.83
626 627 1.234615 CGACCCCAAATGCGTCTGTT 61.235 55.000 0.00 0.00 0.00 3.16
627 628 1.671054 CGACCCCAAATGCGTCTGT 60.671 57.895 0.00 0.00 0.00 3.41
628 629 1.671054 ACGACCCCAAATGCGTCTG 60.671 57.895 0.00 0.00 30.15 3.51
629 630 1.671054 CACGACCCCAAATGCGTCT 60.671 57.895 0.00 0.00 34.37 4.18
630 631 2.867472 CACGACCCCAAATGCGTC 59.133 61.111 0.00 0.00 34.37 5.19
631 632 3.361977 GCACGACCCCAAATGCGT 61.362 61.111 0.00 0.00 37.48 5.24
633 634 4.114997 CCGCACGACCCCAAATGC 62.115 66.667 0.00 0.00 34.66 3.56
634 635 2.671619 ACCGCACGACCCCAAATG 60.672 61.111 0.00 0.00 0.00 2.32
635 636 2.671619 CACCGCACGACCCCAAAT 60.672 61.111 0.00 0.00 0.00 2.32
636 637 3.402095 TTCACCGCACGACCCCAAA 62.402 57.895 0.00 0.00 0.00 3.28
637 638 3.818121 CTTCACCGCACGACCCCAA 62.818 63.158 0.00 0.00 0.00 4.12
638 639 4.308458 CTTCACCGCACGACCCCA 62.308 66.667 0.00 0.00 0.00 4.96
639 640 3.819877 AACTTCACCGCACGACCCC 62.820 63.158 0.00 0.00 0.00 4.95
640 641 2.280592 AACTTCACCGCACGACCC 60.281 61.111 0.00 0.00 0.00 4.46
641 642 2.604174 CCAACTTCACCGCACGACC 61.604 63.158 0.00 0.00 0.00 4.79
642 643 2.935955 CCAACTTCACCGCACGAC 59.064 61.111 0.00 0.00 0.00 4.34
643 644 2.970324 GCCAACTTCACCGCACGA 60.970 61.111 0.00 0.00 0.00 4.35
644 645 2.954753 GAGCCAACTTCACCGCACG 61.955 63.158 0.00 0.00 0.00 5.34
645 646 2.946762 GAGCCAACTTCACCGCAC 59.053 61.111 0.00 0.00 0.00 5.34
646 647 2.652382 TTCGAGCCAACTTCACCGCA 62.652 55.000 0.00 0.00 0.00 5.69
647 648 1.901650 CTTCGAGCCAACTTCACCGC 61.902 60.000 0.00 0.00 0.00 5.68
648 649 0.319555 TCTTCGAGCCAACTTCACCG 60.320 55.000 0.00 0.00 0.00 4.94
649 650 1.149148 GTCTTCGAGCCAACTTCACC 58.851 55.000 0.00 0.00 0.00 4.02
650 651 1.149148 GGTCTTCGAGCCAACTTCAC 58.851 55.000 0.00 0.00 0.00 3.18
651 652 0.756294 TGGTCTTCGAGCCAACTTCA 59.244 50.000 3.43 0.00 0.00 3.02
652 653 1.149148 GTGGTCTTCGAGCCAACTTC 58.851 55.000 6.96 0.00 36.41 3.01
653 654 0.250338 GGTGGTCTTCGAGCCAACTT 60.250 55.000 11.87 0.00 39.29 2.66
654 655 1.371558 GGTGGTCTTCGAGCCAACT 59.628 57.895 11.87 0.00 39.29 3.16
655 656 2.027625 CGGTGGTCTTCGAGCCAAC 61.028 63.158 9.79 9.79 39.01 3.77
656 657 1.750341 TTCGGTGGTCTTCGAGCCAA 61.750 55.000 6.96 0.00 36.41 4.52
657 658 1.750341 TTTCGGTGGTCTTCGAGCCA 61.750 55.000 1.97 1.97 36.72 4.75
658 659 1.005394 TTTCGGTGGTCTTCGAGCC 60.005 57.895 0.00 0.00 36.72 4.70
659 660 1.627550 GCTTTCGGTGGTCTTCGAGC 61.628 60.000 0.00 0.00 36.72 5.03
660 661 0.038159 AGCTTTCGGTGGTCTTCGAG 60.038 55.000 0.00 0.00 36.72 4.04
661 662 0.391597 AAGCTTTCGGTGGTCTTCGA 59.608 50.000 0.00 0.00 0.00 3.71
662 663 0.512952 CAAGCTTTCGGTGGTCTTCG 59.487 55.000 0.00 0.00 0.00 3.79
668 669 0.517316 GCAGTACAAGCTTTCGGTGG 59.483 55.000 0.00 0.00 0.00 4.61
677 678 4.548156 GCGTTTTTCTTTTGCAGTACAAGC 60.548 41.667 0.00 0.00 40.06 4.01
678 679 4.026886 GGCGTTTTTCTTTTGCAGTACAAG 60.027 41.667 0.00 0.00 40.06 3.16
679 680 3.860536 GGCGTTTTTCTTTTGCAGTACAA 59.139 39.130 0.00 0.00 36.13 2.41
680 681 3.440228 GGCGTTTTTCTTTTGCAGTACA 58.560 40.909 0.00 0.00 0.00 2.90
681 682 2.466205 CGGCGTTTTTCTTTTGCAGTAC 59.534 45.455 0.00 0.00 0.00 2.73
682 683 2.355132 TCGGCGTTTTTCTTTTGCAGTA 59.645 40.909 6.85 0.00 0.00 2.74
683 684 1.133407 TCGGCGTTTTTCTTTTGCAGT 59.867 42.857 6.85 0.00 0.00 4.40
684 685 1.833860 TCGGCGTTTTTCTTTTGCAG 58.166 45.000 6.85 0.00 0.00 4.41
685 686 2.279582 TTCGGCGTTTTTCTTTTGCA 57.720 40.000 6.85 0.00 0.00 4.08
692 695 2.096614 TCGAGACATTTCGGCGTTTTTC 60.097 45.455 6.85 0.00 40.83 2.29
699 702 3.384927 CCGTCGAGACATTTCGGC 58.615 61.111 4.02 0.00 41.52 5.54
716 719 4.104066 GCTTAGGTAGACTTTGTACGAGC 58.896 47.826 0.00 0.00 0.00 5.03
725 728 7.053498 GGTAGTAGTAGTGCTTAGGTAGACTT 58.947 42.308 0.00 0.00 0.00 3.01
736 739 2.290464 CTGAGCGGTAGTAGTAGTGCT 58.710 52.381 3.70 3.70 34.96 4.40
737 740 1.334243 CCTGAGCGGTAGTAGTAGTGC 59.666 57.143 0.00 0.00 0.00 4.40
738 741 2.873472 CTCCTGAGCGGTAGTAGTAGTG 59.127 54.545 0.00 0.00 0.00 2.74
739 742 2.158784 CCTCCTGAGCGGTAGTAGTAGT 60.159 54.545 0.00 0.00 0.00 2.73
740 743 2.496111 CCTCCTGAGCGGTAGTAGTAG 58.504 57.143 0.00 0.00 0.00 2.57
741 744 1.476471 GCCTCCTGAGCGGTAGTAGTA 60.476 57.143 0.00 0.00 0.00 1.82
785 788 0.326264 AGGATTCGAGTTTGCAGCCT 59.674 50.000 0.00 0.00 0.00 4.58
804 807 0.178767 CGAATGCAGATGGAGGGTGA 59.821 55.000 0.00 0.00 0.00 4.02
865 875 2.706834 GGTTTGGATTTCGGCCGGG 61.707 63.158 27.83 0.00 0.00 5.73
866 876 2.706834 GGGTTTGGATTTCGGCCGG 61.707 63.158 27.83 6.80 0.00 6.13
1469 1790 1.030488 CAGGATTCAGGTGCAGCTGG 61.030 60.000 37.67 22.99 0.00 4.85
1477 1798 4.851639 AAACATCTAGCAGGATTCAGGT 57.148 40.909 0.00 0.00 0.00 4.00
1500 1821 4.605183 AGGAGCAGACAACTACAGAGTAT 58.395 43.478 0.00 0.00 33.58 2.12
1501 1822 4.035612 AGGAGCAGACAACTACAGAGTA 57.964 45.455 0.00 0.00 33.58 2.59
1523 1844 6.859017 ACTTACAAGAACGGAAAACAACAAT 58.141 32.000 0.00 0.00 0.00 2.71
1533 1854 3.830178 TCCATCAGACTTACAAGAACGGA 59.170 43.478 0.00 0.00 0.00 4.69
1536 1857 4.333926 GGCATCCATCAGACTTACAAGAAC 59.666 45.833 0.00 0.00 0.00 3.01
1538 1859 3.519107 TGGCATCCATCAGACTTACAAGA 59.481 43.478 0.00 0.00 0.00 3.02
1660 2052 1.159285 TCGCAGCAATCAAACAGAGG 58.841 50.000 0.00 0.00 0.00 3.69
1691 2083 2.153627 CGCCAAAAGAAATGAAACTGCG 59.846 45.455 0.00 0.00 0.00 5.18
1749 2141 0.031178 GCAACAACTGTTCCAGCCAG 59.969 55.000 0.00 0.00 35.83 4.85
2034 2504 3.012518 GAGGACAGATTCAACACCATGG 58.987 50.000 11.19 11.19 0.00 3.66
2042 2531 3.162666 ACGTACCTGAGGACAGATTCAA 58.837 45.455 4.99 0.00 46.03 2.69
2053 2542 5.986004 ACTTCAAAAAGAACGTACCTGAG 57.014 39.130 0.00 0.00 36.30 3.35
2054 2543 6.339730 TGTACTTCAAAAAGAACGTACCTGA 58.660 36.000 0.00 0.00 38.57 3.86
2061 2550 6.804534 TTTGCATGTACTTCAAAAAGAACG 57.195 33.333 0.00 0.00 36.30 3.95
2064 2553 8.980610 CATGATTTTGCATGTACTTCAAAAAGA 58.019 29.630 17.56 11.20 41.26 2.52
2069 2558 6.343716 ACCATGATTTTGCATGTACTTCAA 57.656 33.333 0.00 0.00 43.16 2.69
2101 2672 2.205074 AGACTGAACTCACACGCTTTG 58.795 47.619 0.00 0.00 0.00 2.77
2138 2709 0.324614 TTGGCTTCTGATGCGGAAGA 59.675 50.000 17.65 0.00 46.45 2.87
2179 2750 5.586243 GCTGTAAGATCTTTTGATGCCTACA 59.414 40.000 14.36 7.45 39.67 2.74
2189 2760 9.880157 AATTTGCATTATGCTGTAAGATCTTTT 57.120 25.926 18.44 0.00 45.31 2.27
2215 2786 5.123820 GCTGTACAATCTTTCAATGCCTACA 59.876 40.000 0.00 0.00 0.00 2.74
2224 2795 4.916831 CGCATTTTGCTGTACAATCTTTCA 59.083 37.500 0.00 0.00 42.25 2.69
2267 2838 3.864789 AGCCAGAGTTTTCCTTCTGAA 57.135 42.857 3.22 0.00 32.38 3.02
2302 2873 4.067192 GCCAAAAGGAATGTTCTGCAATT 58.933 39.130 0.00 0.00 0.00 2.32
2303 2874 3.071312 TGCCAAAAGGAATGTTCTGCAAT 59.929 39.130 0.00 0.00 0.00 3.56
2304 2875 2.433604 TGCCAAAAGGAATGTTCTGCAA 59.566 40.909 0.00 0.00 0.00 4.08
2548 3122 3.571401 CCATGTGAGCAAACCTCTCTTTT 59.429 43.478 0.00 0.00 41.35 2.27
2554 3128 1.808945 CAGTCCATGTGAGCAAACCTC 59.191 52.381 0.00 0.00 41.15 3.85
2573 3147 8.836268 AAACAAGTACGGTAAGATATTTGTCA 57.164 30.769 0.00 0.00 0.00 3.58
2585 3159 1.865970 CACGGCAAAACAAGTACGGTA 59.134 47.619 0.00 0.00 0.00 4.02
2587 3161 0.938713 TCACGGCAAAACAAGTACGG 59.061 50.000 0.00 0.00 0.00 4.02
2618 3192 3.694072 TGGGAAAACAGTGTTTCAGTGAG 59.306 43.478 21.10 0.00 38.93 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.