Multiple sequence alignment - TraesCS7B01G018900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G018900 chr7B 100.000 3978 0 0 1 3978 15934431 15938408 0.000000e+00 7347.0
1 TraesCS7B01G018900 chr7B 83.500 600 67 10 872 1465 16826278 16826851 7.570000e-147 531.0
2 TraesCS7B01G018900 chr7B 81.283 374 56 14 1678 2043 29607830 29607463 1.400000e-74 291.0
3 TraesCS7B01G018900 chr7B 82.375 261 44 2 72 331 357968054 357968313 4.000000e-55 226.0
4 TraesCS7B01G018900 chr7B 81.579 228 25 10 1752 1977 31447167 31446955 5.290000e-39 172.0
5 TraesCS7B01G018900 chr7B 79.730 222 40 5 2923 3140 16953254 16953474 5.320000e-34 156.0
6 TraesCS7B01G018900 chr7A 95.858 1159 42 3 2823 3978 77709528 77710683 0.000000e+00 1869.0
7 TraesCS7B01G018900 chr7A 92.215 745 40 8 864 1591 77731725 77732468 0.000000e+00 1038.0
8 TraesCS7B01G018900 chr7A 90.392 739 47 11 870 1591 77706688 77707419 0.000000e+00 950.0
9 TraesCS7B01G018900 chr7A 78.571 1148 138 66 2341 3425 77733275 77734377 0.000000e+00 658.0
10 TraesCS7B01G018900 chr7A 84.638 677 62 19 864 1515 77915099 77915758 1.560000e-178 636.0
11 TraesCS7B01G018900 chr7A 77.470 1154 166 59 872 1969 78080788 78079673 4.400000e-169 604.0
12 TraesCS7B01G018900 chr7A 84.686 542 67 10 986 1522 78217659 78218189 9.790000e-146 527.0
13 TraesCS7B01G018900 chr7A 90.268 411 12 2 2416 2798 77709044 77709454 2.740000e-141 512.0
14 TraesCS7B01G018900 chr7A 94.798 173 9 0 2215 2387 77708875 77709047 1.820000e-68 270.0
15 TraesCS7B01G018900 chr7A 82.222 315 46 9 1679 1987 84026247 84025937 3.050000e-66 263.0
16 TraesCS7B01G018900 chr7A 79.402 301 52 9 2842 3140 78224748 78225040 1.870000e-48 204.0
17 TraesCS7B01G018900 chr7A 88.806 134 10 4 2082 2215 77707923 77708051 4.110000e-35 159.0
18 TraesCS7B01G018900 chr7A 88.806 134 10 4 2082 2215 77732972 77733100 4.110000e-35 159.0
19 TraesCS7B01G018900 chr7D 95.333 1157 41 3 2827 3973 73215856 73217009 0.000000e+00 1825.0
20 TraesCS7B01G018900 chr7D 93.068 1183 41 20 2827 3973 73182035 73183212 0.000000e+00 1692.0
21 TraesCS7B01G018900 chr7D 93.957 695 24 8 870 1560 73178100 73178780 0.000000e+00 1035.0
22 TraesCS7B01G018900 chr7D 92.121 660 34 5 949 1591 73218106 73218764 0.000000e+00 915.0
23 TraesCS7B01G018900 chr7D 92.006 638 33 11 971 1591 73213055 73213691 0.000000e+00 880.0
24 TraesCS7B01G018900 chr7D 91.854 577 16 3 2215 2763 73215138 73215711 0.000000e+00 776.0
25 TraesCS7B01G018900 chr7D 84.320 625 52 25 1634 2215 73213689 73214310 1.600000e-158 569.0
26 TraesCS7B01G018900 chr7D 84.304 618 52 25 1634 2208 73218762 73219377 2.680000e-156 562.0
27 TraesCS7B01G018900 chr7D 88.546 454 37 11 1698 2141 73180160 73180608 1.630000e-148 536.0
28 TraesCS7B01G018900 chr7D 90.909 407 9 2 2416 2794 73181630 73182036 4.560000e-144 521.0
29 TraesCS7B01G018900 chr7D 82.167 600 66 13 872 1465 73565425 73564861 1.000000e-130 477.0
30 TraesCS7B01G018900 chr7D 81.067 375 54 14 1678 2043 82348450 82348084 2.340000e-72 283.0
31 TraesCS7B01G018900 chr7D 95.376 173 8 0 2215 2387 73181461 73181633 3.920000e-70 276.0
32 TraesCS7B01G018900 chr7D 81.111 270 41 9 69 333 578626325 578626589 1.450000e-49 207.0
33 TraesCS7B01G018900 chr7D 79.070 301 53 6 2842 3140 74393779 74394071 8.720000e-47 198.0
34 TraesCS7B01G018900 chr7D 77.778 297 42 14 1689 1977 82448378 82448098 1.140000e-35 161.0
35 TraesCS7B01G018900 chr7D 86.047 129 11 4 2080 2208 73180581 73180702 8.970000e-27 132.0
36 TraesCS7B01G018900 chr7D 94.186 86 5 0 864 949 73212975 73213060 8.970000e-27 132.0
37 TraesCS7B01G018900 chr7D 94.231 52 3 0 864 915 73218057 73218108 3.300000e-11 80.5
38 TraesCS7B01G018900 chr7D 100.000 35 0 0 2760 2794 73215823 73215857 9.230000e-07 65.8
39 TraesCS7B01G018900 chr2B 82.965 634 77 18 921 1530 55210283 55209657 9.720000e-151 544.0
40 TraesCS7B01G018900 chr2B 83.333 198 24 7 2118 2312 122928078 122928269 1.470000e-39 174.0
41 TraesCS7B01G018900 chr2B 79.508 244 39 8 1730 1971 54786513 54786279 3.180000e-36 163.0
42 TraesCS7B01G018900 chr2B 84.024 169 15 5 1350 1515 55514206 55514047 6.890000e-33 152.0
43 TraesCS7B01G018900 chr2B 81.218 197 12 11 2118 2312 122993877 122994050 6.930000e-28 135.0
44 TraesCS7B01G018900 chr2D 77.029 727 118 31 69 762 606196483 606195773 4.860000e-99 372.0
45 TraesCS7B01G018900 chr2D 81.203 266 44 6 69 331 482217690 482217428 4.030000e-50 209.0
46 TraesCS7B01G018900 chr1B 76.204 706 99 39 74 742 83964853 83964180 3.860000e-80 309.0
47 TraesCS7B01G018900 chr5D 81.633 294 42 9 69 359 445347979 445348263 2.390000e-57 233.0
48 TraesCS7B01G018900 chr5D 81.481 270 40 9 69 333 530317645 530317909 3.110000e-51 213.0
49 TraesCS7B01G018900 chr5D 77.419 248 42 10 3717 3962 182841220 182841455 6.930000e-28 135.0
50 TraesCS7B01G018900 chr3D 81.887 265 38 8 51 307 174920147 174920409 8.660000e-52 215.0
51 TraesCS7B01G018900 chr3B 78.274 336 62 10 121 451 787575308 787575637 5.210000e-49 206.0
52 TraesCS7B01G018900 chr5A 79.139 302 55 8 36 332 682245076 682245374 6.740000e-48 202.0
53 TraesCS7B01G018900 chr5A 80.402 199 37 2 2115 2312 112937648 112937451 2.480000e-32 150.0
54 TraesCS7B01G018900 chr1A 80.669 269 44 7 69 333 414351840 414351576 6.740000e-48 202.0
55 TraesCS7B01G018900 chr4B 79.600 250 48 1 3727 3973 404461715 404461964 4.090000e-40 176.0
56 TraesCS7B01G018900 chr6D 79.253 241 35 8 2084 2312 30747495 30747732 1.910000e-33 154.0
57 TraesCS7B01G018900 chr6D 81.159 138 20 3 3004 3140 54481445 54481313 5.440000e-19 106.0
58 TraesCS7B01G018900 chr4A 79.397 199 39 2 2115 2312 400134821 400134624 5.360000e-29 139.0
59 TraesCS7B01G018900 chr4A 78.894 199 40 2 2115 2312 237419586 237419389 2.490000e-27 134.0
60 TraesCS7B01G018900 chr4A 84.848 66 6 4 482 544 743698938 743698874 3.320000e-06 63.9
61 TraesCS7B01G018900 chr6B 81.707 164 29 1 2150 2312 56426650 56426813 6.930000e-28 135.0
62 TraesCS7B01G018900 chr6A 79.670 182 35 2 2120 2300 31739949 31740129 3.230000e-26 130.0
63 TraesCS7B01G018900 chr1D 81.081 148 27 1 3815 3962 296541103 296541249 2.510000e-22 117.0
64 TraesCS7B01G018900 chr4D 81.159 138 20 3 3004 3140 459211643 459211511 5.440000e-19 106.0
65 TraesCS7B01G018900 chr2A 88.889 63 6 1 2115 2177 491499151 491499212 4.260000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G018900 chr7B 15934431 15938408 3977 False 7347.000000 7347 100.000000 1 3978 1 chr7B.!!$F1 3977
1 TraesCS7B01G018900 chr7B 16826278 16826851 573 False 531.000000 531 83.500000 872 1465 1 chr7B.!!$F2 593
2 TraesCS7B01G018900 chr7A 77706688 77710683 3995 False 752.000000 1869 92.024400 870 3978 5 chr7A.!!$F4 3108
3 TraesCS7B01G018900 chr7A 77915099 77915758 659 False 636.000000 636 84.638000 864 1515 1 chr7A.!!$F1 651
4 TraesCS7B01G018900 chr7A 77731725 77734377 2652 False 618.333333 1038 86.530667 864 3425 3 chr7A.!!$F5 2561
5 TraesCS7B01G018900 chr7A 78079673 78080788 1115 True 604.000000 604 77.470000 872 1969 1 chr7A.!!$R1 1097
6 TraesCS7B01G018900 chr7A 78217659 78218189 530 False 527.000000 527 84.686000 986 1522 1 chr7A.!!$F2 536
7 TraesCS7B01G018900 chr7D 73178100 73183212 5112 False 698.666667 1692 91.317167 870 3973 6 chr7D.!!$F3 3103
8 TraesCS7B01G018900 chr7D 73212975 73219377 6402 False 645.033333 1825 92.039444 864 3973 9 chr7D.!!$F4 3109
9 TraesCS7B01G018900 chr7D 73564861 73565425 564 True 477.000000 477 82.167000 872 1465 1 chr7D.!!$R1 593
10 TraesCS7B01G018900 chr2B 55209657 55210283 626 True 544.000000 544 82.965000 921 1530 1 chr2B.!!$R2 609
11 TraesCS7B01G018900 chr2D 606195773 606196483 710 True 372.000000 372 77.029000 69 762 1 chr2D.!!$R2 693
12 TraesCS7B01G018900 chr1B 83964180 83964853 673 True 309.000000 309 76.204000 74 742 1 chr1B.!!$R1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 820 0.025770 ACGTTGCGTCGACTGTTTTG 59.974 50.000 14.70 1.65 33.69 2.44 F
824 856 0.036164 TGCTGTTAACCTCGGTGCAT 59.964 50.000 2.48 0.00 0.00 3.96 F
831 863 0.670546 AACCTCGGTGCATCTTCGTG 60.671 55.000 0.00 0.00 0.00 4.35 F
832 864 1.811266 CCTCGGTGCATCTTCGTGG 60.811 63.158 0.00 2.25 0.00 4.94 F
2021 3431 1.226746 GGTGACAAGAAGTGAACCGG 58.773 55.000 0.00 0.00 31.07 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 1746 0.040958 CGGTTCTGCAGTTGAGTTGC 60.041 55.0 14.67 0.0 41.86 4.17 R
1631 1747 0.040958 GCGGTTCTGCAGTTGAGTTG 60.041 55.0 14.67 0.0 34.15 3.16 R
1653 1834 0.948141 GGCCGAGCATGATGTAGAGC 60.948 60.0 0.00 0.0 0.00 4.09 R
2419 4724 1.086634 GCAGATCCGAGACCAACAGC 61.087 60.0 0.00 0.0 0.00 4.40 R
3725 6365 0.610174 TGCAGCCCAAACAAACACAA 59.390 45.0 0.00 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.753669 AAATCTTTTGTTCAAAATTTTCACGAC 57.246 25.926 10.46 0.00 0.00 4.34
29 30 8.702163 ATCTTTTGTTCAAAATTTTCACGACT 57.298 26.923 10.46 0.00 0.00 4.18
30 31 8.527567 TCTTTTGTTCAAAATTTTCACGACTT 57.472 26.923 10.46 0.00 0.00 3.01
31 32 8.983724 TCTTTTGTTCAAAATTTTCACGACTTT 58.016 25.926 10.46 0.00 0.00 2.66
32 33 9.592720 CTTTTGTTCAAAATTTTCACGACTTTT 57.407 25.926 10.46 0.00 0.00 2.27
33 34 9.587461 TTTTGTTCAAAATTTTCACGACTTTTC 57.413 25.926 0.00 0.00 0.00 2.29
34 35 7.284518 TGTTCAAAATTTTCACGACTTTTCC 57.715 32.000 0.00 0.00 0.00 3.13
35 36 6.868864 TGTTCAAAATTTTCACGACTTTTCCA 59.131 30.769 0.00 0.00 0.00 3.53
36 37 7.385205 TGTTCAAAATTTTCACGACTTTTCCAA 59.615 29.630 0.00 0.00 0.00 3.53
37 38 7.891183 TCAAAATTTTCACGACTTTTCCAAA 57.109 28.000 0.00 0.00 0.00 3.28
38 39 8.311650 TCAAAATTTTCACGACTTTTCCAAAA 57.688 26.923 0.00 0.00 0.00 2.44
39 40 8.774586 TCAAAATTTTCACGACTTTTCCAAAAA 58.225 25.926 0.00 0.00 0.00 1.94
40 41 9.553418 CAAAATTTTCACGACTTTTCCAAAAAT 57.447 25.926 0.00 0.00 0.00 1.82
41 42 9.553418 AAAATTTTCACGACTTTTCCAAAAATG 57.447 25.926 0.00 0.00 0.00 2.32
42 43 7.841915 ATTTTCACGACTTTTCCAAAAATGT 57.158 28.000 0.00 0.00 35.96 2.71
43 44 7.659652 TTTTCACGACTTTTCCAAAAATGTT 57.340 28.000 0.00 0.00 34.07 2.71
44 45 6.879188 TTCACGACTTTTCCAAAAATGTTC 57.121 33.333 0.00 0.00 34.07 3.18
45 46 5.955488 TCACGACTTTTCCAAAAATGTTCA 58.045 33.333 0.00 0.00 34.07 3.18
46 47 6.033341 TCACGACTTTTCCAAAAATGTTCAG 58.967 36.000 0.00 0.00 34.07 3.02
47 48 5.231991 CACGACTTTTCCAAAAATGTTCAGG 59.768 40.000 0.00 0.00 34.07 3.86
48 49 5.105513 ACGACTTTTCCAAAAATGTTCAGGT 60.106 36.000 0.00 0.00 34.07 4.00
49 50 5.231991 CGACTTTTCCAAAAATGTTCAGGTG 59.768 40.000 0.00 0.00 34.07 4.00
50 51 6.048732 ACTTTTCCAAAAATGTTCAGGTGT 57.951 33.333 0.00 0.00 30.84 4.16
51 52 6.472016 ACTTTTCCAAAAATGTTCAGGTGTT 58.528 32.000 0.00 0.00 30.84 3.32
52 53 7.616313 ACTTTTCCAAAAATGTTCAGGTGTTA 58.384 30.769 0.00 0.00 30.84 2.41
53 54 7.547722 ACTTTTCCAAAAATGTTCAGGTGTTAC 59.452 33.333 0.00 0.00 30.84 2.50
54 55 6.531503 TTCCAAAAATGTTCAGGTGTTACA 57.468 33.333 0.00 0.00 0.00 2.41
55 56 6.531503 TCCAAAAATGTTCAGGTGTTACAA 57.468 33.333 0.00 0.00 0.00 2.41
56 57 6.936279 TCCAAAAATGTTCAGGTGTTACAAA 58.064 32.000 0.00 0.00 0.00 2.83
57 58 7.386851 TCCAAAAATGTTCAGGTGTTACAAAA 58.613 30.769 0.00 0.00 0.00 2.44
58 59 7.878127 TCCAAAAATGTTCAGGTGTTACAAAAA 59.122 29.630 0.00 0.00 0.00 1.94
85 86 5.885449 TCCCCTTGTCAAAAATTGTTCAT 57.115 34.783 0.00 0.00 0.00 2.57
93 94 9.823098 CTTGTCAAAAATTGTTCATGTTTTCAA 57.177 25.926 0.00 0.00 0.00 2.69
136 138 8.831715 AAATGTCCCAGTTTCATAAATTGTTC 57.168 30.769 0.00 0.00 0.00 3.18
139 141 6.322456 TGTCCCAGTTTCATAAATTGTTCACA 59.678 34.615 0.00 0.00 0.00 3.58
142 144 8.428063 TCCCAGTTTCATAAATTGTTCACAAAT 58.572 29.630 0.00 0.00 39.55 2.32
200 203 8.246871 TCATGAATTTCAAAATATGTTGGCGTA 58.753 29.630 5.78 0.00 0.00 4.42
203 206 9.429359 TGAATTTCAAAATATGTTGGCGTATTT 57.571 25.926 5.78 0.00 44.32 1.40
242 245 3.719173 TGGAACAATGTTCCCGTTTTC 57.281 42.857 34.36 14.23 37.79 2.29
244 247 3.447586 TGGAACAATGTTCCCGTTTTCAA 59.552 39.130 34.36 16.10 37.79 2.69
247 250 5.006261 GGAACAATGTTCCCGTTTTCAAAAG 59.994 40.000 29.66 0.00 32.48 2.27
251 254 6.095720 ACAATGTTCCCGTTTTCAAAAGTCTA 59.904 34.615 0.00 0.00 0.00 2.59
333 336 6.036953 TGTTCATGAATTTGGAAACTGTTTGC 59.963 34.615 16.60 16.60 0.00 3.68
339 342 3.859411 TTGGAAACTGTTTGCGTTTCT 57.141 38.095 17.91 0.00 45.80 2.52
347 350 4.905269 ACTGTTTGCGTTTCTTAGAACAC 58.095 39.130 0.00 0.00 0.00 3.32
350 353 4.632251 TGTTTGCGTTTCTTAGAACACTCA 59.368 37.500 0.00 0.00 0.00 3.41
356 359 5.902432 GCGTTTCTTAGAACACTCAGTTTTC 59.098 40.000 0.00 0.00 41.51 2.29
359 362 6.604735 TTCTTAGAACACTCAGTTTTCTGC 57.395 37.500 15.33 0.00 46.59 4.26
362 365 4.689612 AGAACACTCAGTTTTCTGCCTA 57.310 40.909 5.37 0.00 46.59 3.93
363 366 5.234466 AGAACACTCAGTTTTCTGCCTAT 57.766 39.130 5.37 0.00 46.59 2.57
364 367 5.241662 AGAACACTCAGTTTTCTGCCTATC 58.758 41.667 5.37 0.00 46.59 2.08
370 373 5.645497 ACTCAGTTTTCTGCCTATCAATGTC 59.355 40.000 0.00 0.00 46.59 3.06
371 374 4.631377 TCAGTTTTCTGCCTATCAATGTCG 59.369 41.667 0.00 0.00 46.59 4.35
373 376 3.904800 TTTCTGCCTATCAATGTCGGA 57.095 42.857 0.00 0.00 0.00 4.55
375 378 3.179443 TCTGCCTATCAATGTCGGAAC 57.821 47.619 0.00 0.00 0.00 3.62
377 380 3.197766 TCTGCCTATCAATGTCGGAACTT 59.802 43.478 0.00 0.00 0.00 2.66
378 381 3.531538 TGCCTATCAATGTCGGAACTTC 58.468 45.455 0.00 0.00 0.00 3.01
379 382 3.197766 TGCCTATCAATGTCGGAACTTCT 59.802 43.478 0.00 0.00 0.00 2.85
381 384 5.070446 TGCCTATCAATGTCGGAACTTCTAT 59.930 40.000 0.00 0.00 0.00 1.98
382 385 5.992217 GCCTATCAATGTCGGAACTTCTATT 59.008 40.000 0.00 0.00 0.00 1.73
384 387 7.307455 GCCTATCAATGTCGGAACTTCTATTTC 60.307 40.741 0.00 0.00 0.00 2.17
387 390 7.979444 TCAATGTCGGAACTTCTATTTCTTT 57.021 32.000 0.00 0.00 0.00 2.52
390 393 9.118236 CAATGTCGGAACTTCTATTTCTTTTTC 57.882 33.333 0.00 0.00 0.00 2.29
415 418 7.605691 TCATTCTTTTAAAATACGTTCGGGGTA 59.394 33.333 0.09 0.00 0.00 3.69
424 427 6.762702 AATACGTTCGGGGTATCAAAATTT 57.237 33.333 0.00 0.00 30.54 1.82
429 432 6.374894 ACGTTCGGGGTATCAAAATTTATTCA 59.625 34.615 0.00 0.00 0.00 2.57
506 531 8.716909 TCCTTCACAAATTTTGTTCTTGTTTTC 58.283 29.630 12.02 0.00 43.23 2.29
507 532 7.962373 CCTTCACAAATTTTGTTCTTGTTTTCC 59.038 33.333 12.02 0.00 43.23 3.13
511 536 8.012241 CACAAATTTTGTTCTTGTTTTCCGAAA 58.988 29.630 12.02 0.00 43.23 3.46
513 538 9.553418 CAAATTTTGTTCTTGTTTTCCGAAAAT 57.447 25.926 9.47 0.00 32.22 1.82
514 539 9.553418 AAATTTTGTTCTTGTTTTCCGAAAATG 57.447 25.926 9.47 4.29 32.22 2.32
515 540 7.659652 TTTTGTTCTTGTTTTCCGAAAATGT 57.340 28.000 9.47 0.00 32.22 2.71
516 541 6.639671 TTGTTCTTGTTTTCCGAAAATGTG 57.360 33.333 9.47 3.69 32.22 3.21
517 542 5.955488 TGTTCTTGTTTTCCGAAAATGTGA 58.045 33.333 9.47 5.68 32.22 3.58
518 543 6.390721 TGTTCTTGTTTTCCGAAAATGTGAA 58.609 32.000 9.47 10.41 32.22 3.18
519 544 6.309251 TGTTCTTGTTTTCCGAAAATGTGAAC 59.691 34.615 23.56 23.56 36.78 3.18
520 545 5.955488 TCTTGTTTTCCGAAAATGTGAACA 58.045 33.333 9.47 0.22 32.22 3.18
626 652 7.452231 TGCTTCAAAAATTCTTTCGTGTTTTC 58.548 30.769 0.00 0.00 0.00 2.29
638 664 9.810545 TTCTTTCGTGTTTTCCAAAATATCTTT 57.189 25.926 0.00 0.00 0.00 2.52
639 665 9.458374 TCTTTCGTGTTTTCCAAAATATCTTTC 57.542 29.630 0.00 0.00 0.00 2.62
683 714 5.003214 GCTACACGTACAGAAGTTAACATCG 59.997 44.000 8.61 4.96 0.00 3.84
687 718 4.919754 ACGTACAGAAGTTAACATCGAACC 59.080 41.667 8.61 0.00 0.00 3.62
696 727 5.054477 AGTTAACATCGAACCGGGAATATG 58.946 41.667 6.32 6.99 0.00 1.78
719 751 4.183101 CCGCAACGGTAACTCCTAAATAA 58.817 43.478 0.00 0.00 42.73 1.40
723 755 6.540205 GCAACGGTAACTCCTAAATAAGTTG 58.460 40.000 0.00 0.00 36.44 3.16
739 771 0.502275 GTTGGCGATGCGTTTTTGTG 59.498 50.000 0.00 0.00 0.00 3.33
743 775 1.760160 CGATGCGTTTTTGTGCACG 59.240 52.632 13.13 0.00 45.07 5.34
746 778 2.376956 GATGCGTTTTTGTGCACGTAA 58.623 42.857 13.13 6.22 45.07 3.18
752 784 1.323412 TTTTGTGCACGTAAGGCCAT 58.677 45.000 13.13 0.00 46.39 4.40
758 790 2.080693 TGCACGTAAGGCCATTTACTG 58.919 47.619 5.01 7.58 46.39 2.74
762 794 3.308866 CACGTAAGGCCATTTACTGTAGC 59.691 47.826 5.01 0.00 46.39 3.58
763 795 3.055675 ACGTAAGGCCATTTACTGTAGCA 60.056 43.478 5.01 0.00 46.39 3.49
764 796 3.555956 CGTAAGGCCATTTACTGTAGCAG 59.444 47.826 5.01 0.00 37.52 4.24
765 797 4.679639 CGTAAGGCCATTTACTGTAGCAGA 60.680 45.833 5.01 0.00 35.18 4.26
766 798 3.550437 AGGCCATTTACTGTAGCAGAG 57.450 47.619 5.01 0.00 35.18 3.35
767 799 1.943340 GGCCATTTACTGTAGCAGAGC 59.057 52.381 0.00 0.00 35.18 4.09
768 800 2.420687 GGCCATTTACTGTAGCAGAGCT 60.421 50.000 0.00 0.00 43.41 4.09
769 801 3.181465 GGCCATTTACTGTAGCAGAGCTA 60.181 47.826 0.00 0.00 40.44 3.32
776 808 4.785950 TAGCAGAGCTACGTTGCG 57.214 55.556 16.07 3.80 42.47 4.85
777 809 1.880894 TAGCAGAGCTACGTTGCGT 59.119 52.632 16.07 5.26 42.47 5.24
778 810 0.179171 TAGCAGAGCTACGTTGCGTC 60.179 55.000 16.07 13.31 42.47 5.19
779 811 2.778997 GCAGAGCTACGTTGCGTCG 61.779 63.158 16.07 9.35 41.54 5.12
780 812 1.154282 CAGAGCTACGTTGCGTCGA 60.154 57.895 16.07 0.00 41.54 4.20
781 813 1.154263 AGAGCTACGTTGCGTCGAC 60.154 57.895 16.07 5.18 41.54 4.20
782 814 1.154263 GAGCTACGTTGCGTCGACT 60.154 57.895 16.07 0.00 41.54 4.18
783 815 1.396543 GAGCTACGTTGCGTCGACTG 61.397 60.000 16.07 8.46 41.54 3.51
784 816 1.728426 GCTACGTTGCGTCGACTGT 60.728 57.895 14.70 6.73 41.54 3.55
785 817 1.273455 GCTACGTTGCGTCGACTGTT 61.273 55.000 14.70 0.00 41.54 3.16
786 818 1.126079 CTACGTTGCGTCGACTGTTT 58.874 50.000 14.70 0.00 41.54 2.83
787 819 1.519758 CTACGTTGCGTCGACTGTTTT 59.480 47.619 14.70 0.00 41.54 2.43
788 820 0.025770 ACGTTGCGTCGACTGTTTTG 59.974 50.000 14.70 1.65 33.69 2.44
789 821 0.299300 CGTTGCGTCGACTGTTTTGA 59.701 50.000 14.70 0.00 0.00 2.69
790 822 1.653679 CGTTGCGTCGACTGTTTTGAG 60.654 52.381 14.70 0.00 0.00 3.02
791 823 1.326548 GTTGCGTCGACTGTTTTGAGT 59.673 47.619 14.70 0.00 0.00 3.41
792 824 1.647346 TGCGTCGACTGTTTTGAGTT 58.353 45.000 14.70 0.00 0.00 3.01
793 825 2.004017 TGCGTCGACTGTTTTGAGTTT 58.996 42.857 14.70 0.00 0.00 2.66
794 826 2.417239 TGCGTCGACTGTTTTGAGTTTT 59.583 40.909 14.70 0.00 0.00 2.43
795 827 3.027029 GCGTCGACTGTTTTGAGTTTTC 58.973 45.455 14.70 0.00 0.00 2.29
796 828 3.242316 GCGTCGACTGTTTTGAGTTTTCT 60.242 43.478 14.70 0.00 0.00 2.52
797 829 4.026310 GCGTCGACTGTTTTGAGTTTTCTA 60.026 41.667 14.70 0.00 0.00 2.10
798 830 5.333111 GCGTCGACTGTTTTGAGTTTTCTAT 60.333 40.000 14.70 0.00 0.00 1.98
799 831 6.646636 CGTCGACTGTTTTGAGTTTTCTATT 58.353 36.000 14.70 0.00 0.00 1.73
800 832 7.123830 CGTCGACTGTTTTGAGTTTTCTATTT 58.876 34.615 14.70 0.00 0.00 1.40
801 833 7.638683 CGTCGACTGTTTTGAGTTTTCTATTTT 59.361 33.333 14.70 0.00 0.00 1.82
802 834 9.285770 GTCGACTGTTTTGAGTTTTCTATTTTT 57.714 29.630 8.70 0.00 0.00 1.94
815 847 9.961265 AGTTTTCTATTTTTACTGCTGTTAACC 57.039 29.630 0.09 0.00 0.00 2.85
816 848 9.961265 GTTTTCTATTTTTACTGCTGTTAACCT 57.039 29.630 0.09 0.00 0.00 3.50
818 850 7.591006 TCTATTTTTACTGCTGTTAACCTCG 57.409 36.000 0.09 0.00 0.00 4.63
819 851 5.622770 ATTTTTACTGCTGTTAACCTCGG 57.377 39.130 0.09 2.52 0.00 4.63
820 852 3.756933 TTTACTGCTGTTAACCTCGGT 57.243 42.857 0.09 8.30 0.00 4.69
821 853 2.736144 TACTGCTGTTAACCTCGGTG 57.264 50.000 15.07 0.74 0.00 4.94
822 854 0.602905 ACTGCTGTTAACCTCGGTGC 60.603 55.000 2.48 0.00 0.00 5.01
823 855 0.602638 CTGCTGTTAACCTCGGTGCA 60.603 55.000 2.48 3.73 0.00 4.57
824 856 0.036164 TGCTGTTAACCTCGGTGCAT 59.964 50.000 2.48 0.00 0.00 3.96
825 857 0.727398 GCTGTTAACCTCGGTGCATC 59.273 55.000 2.48 0.00 0.00 3.91
826 858 1.676014 GCTGTTAACCTCGGTGCATCT 60.676 52.381 2.48 0.00 0.00 2.90
827 859 2.699954 CTGTTAACCTCGGTGCATCTT 58.300 47.619 2.48 0.00 0.00 2.40
828 860 2.673368 CTGTTAACCTCGGTGCATCTTC 59.327 50.000 2.48 0.00 0.00 2.87
829 861 1.659098 GTTAACCTCGGTGCATCTTCG 59.341 52.381 0.00 0.00 0.00 3.79
830 862 0.892755 TAACCTCGGTGCATCTTCGT 59.107 50.000 0.00 0.00 0.00 3.85
831 863 0.670546 AACCTCGGTGCATCTTCGTG 60.671 55.000 0.00 0.00 0.00 4.35
832 864 1.811266 CCTCGGTGCATCTTCGTGG 60.811 63.158 0.00 2.25 0.00 4.94
833 865 1.811266 CTCGGTGCATCTTCGTGGG 60.811 63.158 0.00 0.00 0.00 4.61
834 866 3.499737 CGGTGCATCTTCGTGGGC 61.500 66.667 0.00 0.00 0.00 5.36
835 867 3.134127 GGTGCATCTTCGTGGGCC 61.134 66.667 0.00 0.00 0.00 5.80
836 868 3.499737 GTGCATCTTCGTGGGCCG 61.500 66.667 0.00 0.00 38.13 6.13
837 869 4.776322 TGCATCTTCGTGGGCCGG 62.776 66.667 0.00 0.00 37.11 6.13
862 894 2.480845 GGCGAACGGCTCTTATTATGT 58.519 47.619 13.15 0.00 42.94 2.29
865 897 2.221055 CGAACGGCTCTTATTATGTGCC 59.779 50.000 10.92 10.92 39.76 5.01
868 900 2.434336 ACGGCTCTTATTATGTGCCTCA 59.566 45.455 16.17 0.00 40.65 3.86
944 983 3.788766 CGGAGCGCCAAGAAACCG 61.789 66.667 7.44 4.66 34.77 4.44
1571 1687 3.120060 GCAATTCGTGATCTGTTCTTGCT 60.120 43.478 12.51 0.00 35.92 3.91
1574 1690 6.602179 CAATTCGTGATCTGTTCTTGCTAAA 58.398 36.000 0.00 0.00 0.00 1.85
1575 1691 6.992063 ATTCGTGATCTGTTCTTGCTAAAT 57.008 33.333 0.00 0.00 0.00 1.40
1576 1692 6.801539 TTCGTGATCTGTTCTTGCTAAATT 57.198 33.333 0.00 0.00 0.00 1.82
1577 1693 6.801539 TCGTGATCTGTTCTTGCTAAATTT 57.198 33.333 0.00 0.00 0.00 1.82
1578 1694 6.602179 TCGTGATCTGTTCTTGCTAAATTTG 58.398 36.000 0.00 0.00 0.00 2.32
1579 1695 5.284660 CGTGATCTGTTCTTGCTAAATTTGC 59.715 40.000 0.00 3.44 0.00 3.68
1580 1696 6.151691 GTGATCTGTTCTTGCTAAATTTGCA 58.848 36.000 0.00 6.10 38.80 4.08
1581 1697 6.088616 GTGATCTGTTCTTGCTAAATTTGCAC 59.911 38.462 12.78 5.06 40.40 4.57
1582 1698 5.772825 TCTGTTCTTGCTAAATTTGCACT 57.227 34.783 12.78 0.00 40.40 4.40
1583 1699 6.147864 TCTGTTCTTGCTAAATTTGCACTT 57.852 33.333 12.78 0.00 40.40 3.16
1584 1700 6.208644 TCTGTTCTTGCTAAATTTGCACTTC 58.791 36.000 12.78 6.89 40.40 3.01
1585 1701 6.039717 TCTGTTCTTGCTAAATTTGCACTTCT 59.960 34.615 12.78 0.00 40.40 2.85
1586 1702 6.572519 TGTTCTTGCTAAATTTGCACTTCTT 58.427 32.000 12.78 0.00 40.40 2.52
1587 1703 6.476380 TGTTCTTGCTAAATTTGCACTTCTTG 59.524 34.615 12.78 3.45 40.40 3.02
1588 1704 6.389830 TCTTGCTAAATTTGCACTTCTTGA 57.610 33.333 12.78 5.06 40.40 3.02
1589 1705 6.208644 TCTTGCTAAATTTGCACTTCTTGAC 58.791 36.000 12.78 0.00 40.40 3.18
1590 1706 5.772825 TGCTAAATTTGCACTTCTTGACT 57.227 34.783 0.00 0.00 35.31 3.41
1591 1707 6.147864 TGCTAAATTTGCACTTCTTGACTT 57.852 33.333 0.00 0.00 35.31 3.01
1592 1708 6.208644 TGCTAAATTTGCACTTCTTGACTTC 58.791 36.000 0.00 0.00 35.31 3.01
1593 1709 6.039717 TGCTAAATTTGCACTTCTTGACTTCT 59.960 34.615 0.00 0.00 35.31 2.85
1594 1710 6.580416 GCTAAATTTGCACTTCTTGACTTCTC 59.420 38.462 0.00 0.00 0.00 2.87
1595 1711 4.739046 ATTTGCACTTCTTGACTTCTCG 57.261 40.909 0.00 0.00 0.00 4.04
1596 1712 3.452755 TTGCACTTCTTGACTTCTCGA 57.547 42.857 0.00 0.00 0.00 4.04
1597 1713 3.018598 TGCACTTCTTGACTTCTCGAG 57.981 47.619 5.93 5.93 0.00 4.04
1598 1714 2.623416 TGCACTTCTTGACTTCTCGAGA 59.377 45.455 12.08 12.08 35.39 4.04
1599 1715 3.256879 TGCACTTCTTGACTTCTCGAGAT 59.743 43.478 17.44 1.16 36.88 2.75
1600 1716 4.241681 GCACTTCTTGACTTCTCGAGATT 58.758 43.478 17.44 6.35 36.88 2.40
1601 1717 4.688413 GCACTTCTTGACTTCTCGAGATTT 59.312 41.667 17.44 5.94 36.88 2.17
1602 1718 5.164002 GCACTTCTTGACTTCTCGAGATTTC 60.164 44.000 17.44 15.46 36.88 2.17
1622 1738 2.738846 TCGATTCTTGCTTCTGCTGAAC 59.261 45.455 1.33 1.14 40.48 3.18
1623 1739 2.481568 CGATTCTTGCTTCTGCTGAACA 59.518 45.455 1.33 3.63 40.48 3.18
1624 1740 3.126514 CGATTCTTGCTTCTGCTGAACAT 59.873 43.478 1.33 0.00 40.48 2.71
1626 1742 5.163824 CGATTCTTGCTTCTGCTGAACATAA 60.164 40.000 1.33 4.93 40.48 1.90
1627 1743 5.362556 TTCTTGCTTCTGCTGAACATAAC 57.637 39.130 1.33 0.00 40.48 1.89
1628 1744 3.753272 TCTTGCTTCTGCTGAACATAACC 59.247 43.478 1.33 0.00 40.48 2.85
1629 1745 3.423539 TGCTTCTGCTGAACATAACCT 57.576 42.857 1.33 0.00 40.48 3.50
1630 1746 3.076621 TGCTTCTGCTGAACATAACCTG 58.923 45.455 1.33 0.00 40.48 4.00
1631 1747 2.159462 GCTTCTGCTGAACATAACCTGC 60.159 50.000 1.33 0.00 36.03 4.85
1632 1748 2.857186 TCTGCTGAACATAACCTGCA 57.143 45.000 0.00 0.00 36.19 4.41
1653 1834 2.162921 CTCAACTGCAGAACCGCGTG 62.163 60.000 23.35 6.44 33.35 5.34
1706 3104 4.104633 CGTGTTCGTGCGAGCGAC 62.105 66.667 4.20 3.41 40.85 5.19
1741 3139 4.070552 GCGAGGACGGCTGGTTCT 62.071 66.667 0.00 0.00 37.11 3.01
1771 3172 2.606826 GGGGGAGGTCCGTGAACT 60.607 66.667 0.00 0.00 36.71 3.01
1988 3398 1.334869 GCCACAACTCACAACTTCCTG 59.665 52.381 0.00 0.00 0.00 3.86
1997 3407 5.934781 ACTCACAACTTCCTGAAGATTTCT 58.065 37.500 13.58 0.00 40.79 2.52
2005 3415 5.709164 ACTTCCTGAAGATTTCTTGATGGTG 59.291 40.000 13.58 0.00 40.79 4.17
2006 3416 5.503634 TCCTGAAGATTTCTTGATGGTGA 57.496 39.130 0.00 0.00 36.11 4.02
2007 3417 5.248640 TCCTGAAGATTTCTTGATGGTGAC 58.751 41.667 0.00 0.00 36.11 3.67
2009 3419 5.474532 CCTGAAGATTTCTTGATGGTGACAA 59.525 40.000 0.00 0.00 39.40 3.18
2010 3420 6.349115 CCTGAAGATTTCTTGATGGTGACAAG 60.349 42.308 0.00 0.00 43.92 3.16
2016 3426 4.687901 TCTTGATGGTGACAAGAAGTGA 57.312 40.909 0.00 0.00 46.68 3.41
2017 3427 5.034852 TCTTGATGGTGACAAGAAGTGAA 57.965 39.130 0.00 0.00 46.68 3.18
2018 3428 4.816385 TCTTGATGGTGACAAGAAGTGAAC 59.184 41.667 0.00 0.00 46.68 3.18
2020 3430 1.948104 TGGTGACAAGAAGTGAACCG 58.052 50.000 0.00 0.00 39.16 4.44
2021 3431 1.226746 GGTGACAAGAAGTGAACCGG 58.773 55.000 0.00 0.00 31.07 5.28
2022 3432 1.474498 GGTGACAAGAAGTGAACCGGT 60.474 52.381 0.00 0.00 31.07 5.28
2026 3436 3.133362 TGACAAGAAGTGAACCGGTAGTT 59.867 43.478 8.00 1.30 43.07 2.24
2077 3521 3.503363 TGGCTAATCTGCTTGTGTTTGAG 59.497 43.478 0.00 0.00 0.00 3.02
2080 3527 5.181245 GGCTAATCTGCTTGTGTTTGAGTAA 59.819 40.000 0.00 0.00 0.00 2.24
2088 3535 6.734137 TGCTTGTGTTTGAGTAATTTACTGG 58.266 36.000 13.69 0.00 39.59 4.00
2092 3539 7.867305 TGTGTTTGAGTAATTTACTGGAACA 57.133 32.000 19.97 19.97 39.59 3.18
2113 3589 9.535878 GGAACAGTTATAGTATGAGGAGAAAAG 57.464 37.037 0.00 0.00 0.00 2.27
2168 3644 1.270550 GGTGTTGGGAATTGTCTGCAG 59.729 52.381 7.63 7.63 0.00 4.41
2189 3665 9.190858 CTGCAGCTGTAGTAATCTTTTAGATAG 57.809 37.037 22.33 0.00 32.89 2.08
2208 3684 2.843701 AGATGAAAGATGATCCGTGGC 58.156 47.619 0.00 0.00 0.00 5.01
2209 3685 2.437281 AGATGAAAGATGATCCGTGGCT 59.563 45.455 0.00 0.00 0.00 4.75
2210 3686 3.643320 AGATGAAAGATGATCCGTGGCTA 59.357 43.478 0.00 0.00 0.00 3.93
2211 3687 3.459232 TGAAAGATGATCCGTGGCTAG 57.541 47.619 0.00 0.00 0.00 3.42
2213 3689 3.197766 TGAAAGATGATCCGTGGCTAGTT 59.802 43.478 0.00 0.00 0.00 2.24
2251 4556 8.073467 TGGAACTTAAAACTCCAAATCAGTTT 57.927 30.769 0.00 0.00 44.34 2.66
2269 4574 7.065216 TCAGTTTATTCATCTCTTTTCAGCG 57.935 36.000 0.00 0.00 0.00 5.18
2278 4583 6.166279 TCATCTCTTTTCAGCGTTAACAGAT 58.834 36.000 6.39 0.31 0.00 2.90
2314 4619 3.520569 CGTTTGATTTGGCCCATTTAGG 58.479 45.455 0.00 0.00 37.03 2.69
2399 4704 2.832129 TGTTCATGTCCTCCCTACTGAC 59.168 50.000 0.00 0.00 0.00 3.51
2409 4714 3.309994 CCTCCCTACTGACCCTCTTTAGT 60.310 52.174 0.00 0.00 0.00 2.24
2419 4724 5.551233 TGACCCTCTTTAGTGAGAAATGTG 58.449 41.667 0.00 0.00 36.23 3.21
2432 4737 1.197721 GAAATGTGCTGTTGGTCTCGG 59.802 52.381 0.00 0.00 0.00 4.63
2491 4800 5.838531 TGCTGCATGAACATGATATTTGA 57.161 34.783 17.40 0.00 41.20 2.69
2540 4849 5.866092 TCTGATATTATGATGCGCTTGTCTC 59.134 40.000 9.73 0.00 0.00 3.36
2550 4859 1.201965 GCGCTTGTCTCATACTGTTGC 60.202 52.381 0.00 0.00 0.00 4.17
2731 5064 5.316167 TCTAAAAGCCAAATCAAGCTCAGA 58.684 37.500 0.00 0.00 38.74 3.27
2794 5325 9.383519 TCTCACCTGTGAATAAAATTCAGATAC 57.616 33.333 2.65 0.00 39.39 2.24
2795 5326 9.388506 CTCACCTGTGAATAAAATTCAGATACT 57.611 33.333 2.65 0.00 39.39 2.12
2796 5327 9.383519 TCACCTGTGAATAAAATTCAGATACTC 57.616 33.333 2.65 0.00 36.53 2.59
2797 5328 8.616076 CACCTGTGAATAAAATTCAGATACTCC 58.384 37.037 2.65 0.00 0.00 3.85
2798 5329 8.552296 ACCTGTGAATAAAATTCAGATACTCCT 58.448 33.333 2.65 0.00 0.00 3.69
2799 5330 9.401058 CCTGTGAATAAAATTCAGATACTCCTT 57.599 33.333 2.65 0.00 0.00 3.36
2801 5332 9.958180 TGTGAATAAAATTCAGATACTCCTTCA 57.042 29.630 2.65 0.00 0.00 3.02
2803 5334 9.396022 TGAATAAAATTCAGATACTCCTTCACC 57.604 33.333 0.00 0.00 0.00 4.02
2804 5335 9.620259 GAATAAAATTCAGATACTCCTTCACCT 57.380 33.333 0.00 0.00 0.00 4.00
2805 5336 8.970859 ATAAAATTCAGATACTCCTTCACCTG 57.029 34.615 0.00 0.00 0.00 4.00
2806 5337 6.627087 AAATTCAGATACTCCTTCACCTGA 57.373 37.500 0.00 0.00 0.00 3.86
2807 5338 5.867903 ATTCAGATACTCCTTCACCTGAG 57.132 43.478 0.00 0.00 33.02 3.35
2808 5339 4.592997 TCAGATACTCCTTCACCTGAGA 57.407 45.455 0.00 0.00 32.84 3.27
2809 5340 4.935578 TCAGATACTCCTTCACCTGAGAA 58.064 43.478 0.00 0.00 32.84 2.87
2810 5341 4.952957 TCAGATACTCCTTCACCTGAGAAG 59.047 45.833 0.00 0.00 43.60 2.85
2811 5342 4.952957 CAGATACTCCTTCACCTGAGAAGA 59.047 45.833 5.34 0.00 46.18 2.87
2812 5343 5.598005 CAGATACTCCTTCACCTGAGAAGAT 59.402 44.000 5.34 0.00 46.18 2.40
2813 5344 6.098124 CAGATACTCCTTCACCTGAGAAGATT 59.902 42.308 5.34 0.00 46.18 2.40
2814 5345 7.286546 CAGATACTCCTTCACCTGAGAAGATTA 59.713 40.741 5.34 0.00 46.18 1.75
2815 5346 5.930837 ACTCCTTCACCTGAGAAGATTAG 57.069 43.478 5.34 3.20 46.18 1.73
2816 5347 5.584913 ACTCCTTCACCTGAGAAGATTAGA 58.415 41.667 5.34 0.00 46.18 2.10
2817 5348 6.019748 ACTCCTTCACCTGAGAAGATTAGAA 58.980 40.000 5.34 0.00 46.18 2.10
2818 5349 6.671779 ACTCCTTCACCTGAGAAGATTAGAAT 59.328 38.462 5.34 0.00 46.18 2.40
2819 5350 7.181845 ACTCCTTCACCTGAGAAGATTAGAATT 59.818 37.037 5.34 0.00 46.18 2.17
2820 5351 8.609617 TCCTTCACCTGAGAAGATTAGAATTA 57.390 34.615 5.34 0.00 46.18 1.40
2821 5352 9.218525 TCCTTCACCTGAGAAGATTAGAATTAT 57.781 33.333 5.34 0.00 46.18 1.28
2822 5353 9.270640 CCTTCACCTGAGAAGATTAGAATTATG 57.729 37.037 5.34 0.00 46.18 1.90
2823 5354 9.270640 CTTCACCTGAGAAGATTAGAATTATGG 57.729 37.037 0.00 0.00 46.18 2.74
2824 5355 8.553085 TCACCTGAGAAGATTAGAATTATGGA 57.447 34.615 0.00 0.00 0.00 3.41
2825 5356 8.646004 TCACCTGAGAAGATTAGAATTATGGAG 58.354 37.037 0.00 0.00 0.00 3.86
2826 5357 8.428063 CACCTGAGAAGATTAGAATTATGGAGT 58.572 37.037 0.00 0.00 0.00 3.85
2827 5358 9.661954 ACCTGAGAAGATTAGAATTATGGAGTA 57.338 33.333 0.00 0.00 0.00 2.59
3113 5653 2.874701 GTTCAGAAAACTCAGCAGCTCA 59.125 45.455 0.00 0.00 0.00 4.26
3332 5962 2.040145 TGAGTTGATGGTCCTGCATTCA 59.960 45.455 0.00 0.00 0.00 2.57
3534 6170 7.096230 GGTTTCGTGGAAAATAAACATTCACAG 60.096 37.037 0.00 0.00 33.14 3.66
3577 6213 5.957168 TCATCAAAATGAATTTGCCCCTCTA 59.043 36.000 0.00 0.00 46.53 2.43
3602 6238 1.470979 CCCATTACCGAGACACTTCCG 60.471 57.143 0.00 0.00 0.00 4.30
3626 6262 2.072298 GACCTGAAGCTGCAGTAACTG 58.928 52.381 20.71 7.14 34.06 3.16
3631 6267 3.393800 TGAAGCTGCAGTAACTGAAGTC 58.606 45.455 16.64 0.00 39.27 3.01
3679 6317 1.374947 GAAGGTGCAGTGCCTACCA 59.625 57.895 22.70 0.00 36.94 3.25
3680 6318 0.955919 GAAGGTGCAGTGCCTACCAC 60.956 60.000 22.70 14.00 45.01 4.16
3701 6339 5.766670 CCACAATATGTGCTCTTGATACCAT 59.233 40.000 4.98 0.00 46.51 3.55
3753 6393 2.170187 TGTTTGGGCTGCAAATTTCACT 59.830 40.909 0.50 0.00 0.00 3.41
3782 6422 1.926511 GCAACAACTCCGGCTGGATG 61.927 60.000 16.52 14.36 45.33 3.51
3913 6553 2.507484 CTGAAATGCCCTCAGTTGTGA 58.493 47.619 0.00 0.00 36.38 3.58
3924 6564 5.063204 CCCTCAGTTGTGATGTAACTTGAA 58.937 41.667 0.00 0.00 36.29 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.753669 GTCGTGAAAATTTTGAACAAAAGATTT 57.246 25.926 8.47 16.99 42.72 2.17
3 4 9.150348 AGTCGTGAAAATTTTGAACAAAAGATT 57.850 25.926 8.47 13.00 42.72 2.40
5 6 8.527567 AAGTCGTGAAAATTTTGAACAAAAGA 57.472 26.923 8.47 5.65 42.72 2.52
6 7 9.592720 AAAAGTCGTGAAAATTTTGAACAAAAG 57.407 25.926 8.47 3.78 42.72 2.27
7 8 9.587461 GAAAAGTCGTGAAAATTTTGAACAAAA 57.413 25.926 8.47 13.72 43.48 2.44
8 9 8.224437 GGAAAAGTCGTGAAAATTTTGAACAAA 58.776 29.630 8.47 0.00 0.00 2.83
9 10 7.385205 TGGAAAAGTCGTGAAAATTTTGAACAA 59.615 29.630 8.47 0.00 0.00 2.83
10 11 6.868864 TGGAAAAGTCGTGAAAATTTTGAACA 59.131 30.769 8.47 0.00 0.00 3.18
11 12 7.284518 TGGAAAAGTCGTGAAAATTTTGAAC 57.715 32.000 8.47 5.78 0.00 3.18
12 13 7.891183 TTGGAAAAGTCGTGAAAATTTTGAA 57.109 28.000 8.47 0.00 0.00 2.69
13 14 7.891183 TTTGGAAAAGTCGTGAAAATTTTGA 57.109 28.000 8.47 0.00 0.00 2.69
14 15 8.941127 TTTTTGGAAAAGTCGTGAAAATTTTG 57.059 26.923 8.47 0.00 0.00 2.44
15 16 9.553418 CATTTTTGGAAAAGTCGTGAAAATTTT 57.447 25.926 2.28 2.28 0.00 1.82
16 17 8.726068 ACATTTTTGGAAAAGTCGTGAAAATTT 58.274 25.926 0.00 0.00 0.00 1.82
17 18 8.262715 ACATTTTTGGAAAAGTCGTGAAAATT 57.737 26.923 0.00 0.00 0.00 1.82
18 19 7.841915 ACATTTTTGGAAAAGTCGTGAAAAT 57.158 28.000 0.00 0.00 0.00 1.82
19 20 7.385205 TGAACATTTTTGGAAAAGTCGTGAAAA 59.615 29.630 0.00 0.00 0.00 2.29
20 21 6.868864 TGAACATTTTTGGAAAAGTCGTGAAA 59.131 30.769 0.00 0.00 0.00 2.69
21 22 6.390721 TGAACATTTTTGGAAAAGTCGTGAA 58.609 32.000 0.00 0.00 0.00 3.18
22 23 5.955488 TGAACATTTTTGGAAAAGTCGTGA 58.045 33.333 0.00 0.00 0.00 4.35
23 24 5.231991 CCTGAACATTTTTGGAAAAGTCGTG 59.768 40.000 0.00 0.00 0.00 4.35
24 25 5.105513 ACCTGAACATTTTTGGAAAAGTCGT 60.106 36.000 0.00 0.00 0.00 4.34
25 26 5.231991 CACCTGAACATTTTTGGAAAAGTCG 59.768 40.000 0.00 0.00 0.00 4.18
26 27 6.106003 ACACCTGAACATTTTTGGAAAAGTC 58.894 36.000 0.00 0.00 0.00 3.01
27 28 6.048732 ACACCTGAACATTTTTGGAAAAGT 57.951 33.333 0.00 0.00 0.00 2.66
28 29 6.983474 AACACCTGAACATTTTTGGAAAAG 57.017 33.333 0.00 0.00 0.00 2.27
29 30 7.386851 TGTAACACCTGAACATTTTTGGAAAA 58.613 30.769 0.00 0.00 0.00 2.29
30 31 6.936279 TGTAACACCTGAACATTTTTGGAAA 58.064 32.000 0.00 0.00 0.00 3.13
31 32 6.531503 TGTAACACCTGAACATTTTTGGAA 57.468 33.333 0.00 0.00 0.00 3.53
32 33 6.531503 TTGTAACACCTGAACATTTTTGGA 57.468 33.333 0.00 0.00 0.00 3.53
33 34 7.602517 TTTTGTAACACCTGAACATTTTTGG 57.397 32.000 0.00 0.00 0.00 3.28
55 56 7.395772 ACAATTTTTGACAAGGGGAACATTTTT 59.604 29.630 0.00 0.00 27.26 1.94
56 57 6.889177 ACAATTTTTGACAAGGGGAACATTTT 59.111 30.769 0.00 0.00 27.26 1.82
57 58 6.422333 ACAATTTTTGACAAGGGGAACATTT 58.578 32.000 0.00 0.00 27.26 2.32
58 59 6.000246 ACAATTTTTGACAAGGGGAACATT 58.000 33.333 0.00 0.00 32.26 2.71
59 60 5.628797 ACAATTTTTGACAAGGGGAACAT 57.371 34.783 0.00 0.00 0.00 2.71
60 61 5.046304 TGAACAATTTTTGACAAGGGGAACA 60.046 36.000 0.00 0.00 0.00 3.18
61 62 5.423886 TGAACAATTTTTGACAAGGGGAAC 58.576 37.500 0.00 0.00 0.00 3.62
62 63 5.683876 TGAACAATTTTTGACAAGGGGAA 57.316 34.783 0.00 0.00 0.00 3.97
63 64 5.130145 ACATGAACAATTTTTGACAAGGGGA 59.870 36.000 0.00 0.00 0.00 4.81
64 65 5.367302 ACATGAACAATTTTTGACAAGGGG 58.633 37.500 0.00 0.00 0.00 4.79
65 66 6.923928 AACATGAACAATTTTTGACAAGGG 57.076 33.333 0.00 0.00 0.00 3.95
66 67 8.449397 TGAAAACATGAACAATTTTTGACAAGG 58.551 29.630 0.00 0.00 0.00 3.61
67 68 9.823098 TTGAAAACATGAACAATTTTTGACAAG 57.177 25.926 0.00 0.00 0.00 3.16
78 79 8.356657 ACTCCGAAATATTGAAAACATGAACAA 58.643 29.630 0.00 0.48 0.00 2.83
85 86 9.587772 TTTTGAAACTCCGAAATATTGAAAACA 57.412 25.926 0.00 0.00 0.00 2.83
172 175 8.441608 CGCCAACATATTTTGAAATTCATGAAA 58.558 29.630 13.09 0.00 0.00 2.69
175 178 7.293402 ACGCCAACATATTTTGAAATTCATG 57.707 32.000 3.10 0.00 0.00 3.07
177 180 8.994429 AATACGCCAACATATTTTGAAATTCA 57.006 26.923 3.10 0.00 0.00 2.57
195 198 9.885934 AATTCCAAAACAAAATTTAAATACGCC 57.114 25.926 0.01 0.00 0.00 5.68
227 230 5.348164 AGACTTTTGAAAACGGGAACATTG 58.652 37.500 0.00 0.00 0.00 2.82
230 233 4.942483 TGTAGACTTTTGAAAACGGGAACA 59.058 37.500 0.00 0.00 0.00 3.18
231 234 5.488645 TGTAGACTTTTGAAAACGGGAAC 57.511 39.130 0.00 0.00 0.00 3.62
247 250 9.399403 GGAACTTTCTTTGAAAATCATGTAGAC 57.601 33.333 0.00 0.00 0.00 2.59
251 254 7.785033 ACAGGAACTTTCTTTGAAAATCATGT 58.215 30.769 14.30 14.30 34.60 3.21
312 315 4.507388 ACGCAAACAGTTTCCAAATTCATG 59.493 37.500 0.00 0.00 0.00 3.07
314 317 4.116747 ACGCAAACAGTTTCCAAATTCA 57.883 36.364 0.00 0.00 0.00 2.57
315 318 5.463499 AAACGCAAACAGTTTCCAAATTC 57.537 34.783 0.00 0.00 37.23 2.17
326 329 5.156804 AGTGTTCTAAGAAACGCAAACAG 57.843 39.130 3.50 0.00 41.12 3.16
327 330 4.632251 TGAGTGTTCTAAGAAACGCAAACA 59.368 37.500 3.50 0.00 41.12 2.83
333 336 7.119997 CAGAAAACTGAGTGTTCTAAGAAACG 58.880 38.462 17.14 0.54 37.96 3.60
339 342 5.036117 AGGCAGAAAACTGAGTGTTCTAA 57.964 39.130 17.14 0.00 37.96 2.10
347 350 5.220548 CGACATTGATAGGCAGAAAACTGAG 60.221 44.000 0.00 0.00 0.00 3.35
350 353 3.941483 CCGACATTGATAGGCAGAAAACT 59.059 43.478 0.00 0.00 0.00 2.66
356 359 3.185246 AGTTCCGACATTGATAGGCAG 57.815 47.619 0.00 0.00 0.00 4.85
359 362 7.928706 AGAAATAGAAGTTCCGACATTGATAGG 59.071 37.037 0.00 0.00 0.00 2.57
362 365 8.567285 AAAGAAATAGAAGTTCCGACATTGAT 57.433 30.769 0.00 0.00 0.00 2.57
363 366 7.979444 AAAGAAATAGAAGTTCCGACATTGA 57.021 32.000 0.00 0.00 0.00 2.57
364 367 9.118236 GAAAAAGAAATAGAAGTTCCGACATTG 57.882 33.333 0.00 0.00 0.00 2.82
370 373 9.899226 AAGAATGAAAAAGAAATAGAAGTTCCG 57.101 29.630 0.00 0.00 0.00 4.30
387 390 7.808856 CCCCGAACGTATTTTAAAAGAATGAAA 59.191 33.333 6.79 0.00 0.00 2.69
390 393 6.614160 ACCCCGAACGTATTTTAAAAGAATG 58.386 36.000 6.79 5.46 0.00 2.67
399 402 6.762702 ATTTTGATACCCCGAACGTATTTT 57.237 33.333 0.00 0.00 0.00 1.82
476 501 7.877612 ACAAGAACAAAATTTGTGAAGGAGTTT 59.122 29.630 12.50 0.00 44.59 2.66
532 557 9.679661 AAAACCAAAACTAGGAATTTCAAACAT 57.320 25.926 0.00 0.00 0.00 2.71
546 571 9.549078 AGTCTTTGAAAAACAAAACCAAAACTA 57.451 25.926 0.00 0.00 45.97 2.24
598 623 8.641499 AACACGAAAGAATTTTTGAAGCAATA 57.359 26.923 0.00 0.00 39.27 1.90
602 627 6.899771 GGAAAACACGAAAGAATTTTTGAAGC 59.100 34.615 0.00 0.00 39.27 3.86
665 696 4.029861 CGGTTCGATGTTAACTTCTGTACG 59.970 45.833 16.76 12.64 0.00 3.67
674 705 4.319261 GCATATTCCCGGTTCGATGTTAAC 60.319 45.833 0.00 0.00 0.00 2.01
675 706 3.810941 GCATATTCCCGGTTCGATGTTAA 59.189 43.478 0.00 0.00 0.00 2.01
683 714 1.098712 TTGCGGCATATTCCCGGTTC 61.099 55.000 2.28 0.00 45.66 3.62
703 734 4.269363 CGCCAACTTATTTAGGAGTTACCG 59.731 45.833 0.00 0.00 44.74 4.02
709 740 3.059597 CGCATCGCCAACTTATTTAGGAG 60.060 47.826 0.00 0.00 0.00 3.69
711 742 2.612212 ACGCATCGCCAACTTATTTAGG 59.388 45.455 0.00 0.00 0.00 2.69
712 743 3.944422 ACGCATCGCCAACTTATTTAG 57.056 42.857 0.00 0.00 0.00 1.85
713 744 4.688511 AAACGCATCGCCAACTTATTTA 57.311 36.364 0.00 0.00 0.00 1.40
714 745 3.569250 AAACGCATCGCCAACTTATTT 57.431 38.095 0.00 0.00 0.00 1.40
719 751 0.383949 ACAAAAACGCATCGCCAACT 59.616 45.000 0.00 0.00 0.00 3.16
723 755 1.659954 TGCACAAAAACGCATCGCC 60.660 52.632 0.00 0.00 31.95 5.54
739 771 2.081462 ACAGTAAATGGCCTTACGTGC 58.919 47.619 3.32 0.00 36.96 5.34
743 775 4.766375 TCTGCTACAGTAAATGGCCTTAC 58.234 43.478 3.32 5.45 32.61 2.34
746 778 2.420687 GCTCTGCTACAGTAAATGGCCT 60.421 50.000 3.32 0.00 32.61 5.19
762 794 1.154282 TCGACGCAACGTAGCTCTG 60.154 57.895 0.00 0.00 41.37 3.35
763 795 1.154263 GTCGACGCAACGTAGCTCT 60.154 57.895 0.00 0.00 41.37 4.09
764 796 1.154263 AGTCGACGCAACGTAGCTC 60.154 57.895 10.46 0.00 41.37 4.09
765 797 1.442184 CAGTCGACGCAACGTAGCT 60.442 57.895 10.46 0.00 41.37 3.32
766 798 1.273455 AACAGTCGACGCAACGTAGC 61.273 55.000 10.46 0.00 41.37 3.58
767 799 1.126079 AAACAGTCGACGCAACGTAG 58.874 50.000 10.46 0.00 41.37 3.51
768 800 1.255859 CAAAACAGTCGACGCAACGTA 59.744 47.619 10.46 0.00 41.37 3.57
769 801 0.025770 CAAAACAGTCGACGCAACGT 59.974 50.000 10.46 0.91 45.10 3.99
770 802 0.299300 TCAAAACAGTCGACGCAACG 59.701 50.000 10.46 0.26 0.00 4.10
771 803 1.326548 ACTCAAAACAGTCGACGCAAC 59.673 47.619 10.46 0.00 0.00 4.17
772 804 1.647346 ACTCAAAACAGTCGACGCAA 58.353 45.000 10.46 0.00 0.00 4.85
773 805 1.647346 AACTCAAAACAGTCGACGCA 58.353 45.000 10.46 0.00 0.00 5.24
774 806 2.732001 AAACTCAAAACAGTCGACGC 57.268 45.000 10.46 0.00 0.00 5.19
775 807 4.516092 AGAAAACTCAAAACAGTCGACG 57.484 40.909 10.46 7.86 0.00 5.12
776 808 8.836959 AAAATAGAAAACTCAAAACAGTCGAC 57.163 30.769 7.70 7.70 0.00 4.20
789 821 9.961265 GGTTAACAGCAGTAAAAATAGAAAACT 57.039 29.630 8.10 0.00 0.00 2.66
790 822 9.961265 AGGTTAACAGCAGTAAAAATAGAAAAC 57.039 29.630 8.10 0.00 0.00 2.43
792 824 8.500773 CGAGGTTAACAGCAGTAAAAATAGAAA 58.499 33.333 8.10 0.00 0.00 2.52
793 825 7.118680 CCGAGGTTAACAGCAGTAAAAATAGAA 59.881 37.037 8.10 0.00 0.00 2.10
794 826 6.592607 CCGAGGTTAACAGCAGTAAAAATAGA 59.407 38.462 8.10 0.00 0.00 1.98
795 827 6.370718 ACCGAGGTTAACAGCAGTAAAAATAG 59.629 38.462 8.10 0.00 0.00 1.73
796 828 6.148150 CACCGAGGTTAACAGCAGTAAAAATA 59.852 38.462 8.10 0.00 0.00 1.40
797 829 5.048991 CACCGAGGTTAACAGCAGTAAAAAT 60.049 40.000 8.10 0.00 0.00 1.82
798 830 4.273969 CACCGAGGTTAACAGCAGTAAAAA 59.726 41.667 8.10 0.00 0.00 1.94
799 831 3.810941 CACCGAGGTTAACAGCAGTAAAA 59.189 43.478 8.10 0.00 0.00 1.52
800 832 3.395639 CACCGAGGTTAACAGCAGTAAA 58.604 45.455 8.10 0.00 0.00 2.01
801 833 2.868839 GCACCGAGGTTAACAGCAGTAA 60.869 50.000 8.10 0.00 0.00 2.24
802 834 1.337447 GCACCGAGGTTAACAGCAGTA 60.337 52.381 8.10 0.00 0.00 2.74
803 835 0.602905 GCACCGAGGTTAACAGCAGT 60.603 55.000 8.10 0.00 0.00 4.40
804 836 0.602638 TGCACCGAGGTTAACAGCAG 60.603 55.000 8.10 0.00 0.00 4.24
805 837 0.036164 ATGCACCGAGGTTAACAGCA 59.964 50.000 8.10 6.67 34.78 4.41
806 838 0.727398 GATGCACCGAGGTTAACAGC 59.273 55.000 8.10 2.19 0.00 4.40
807 839 2.386661 AGATGCACCGAGGTTAACAG 57.613 50.000 8.10 0.00 0.00 3.16
808 840 2.695359 GAAGATGCACCGAGGTTAACA 58.305 47.619 8.10 0.00 0.00 2.41
809 841 1.659098 CGAAGATGCACCGAGGTTAAC 59.341 52.381 0.00 0.00 0.00 2.01
810 842 1.274167 ACGAAGATGCACCGAGGTTAA 59.726 47.619 0.00 0.00 0.00 2.01
811 843 0.892755 ACGAAGATGCACCGAGGTTA 59.107 50.000 0.00 0.00 0.00 2.85
812 844 0.670546 CACGAAGATGCACCGAGGTT 60.671 55.000 0.00 0.00 0.00 3.50
813 845 1.079819 CACGAAGATGCACCGAGGT 60.080 57.895 0.00 0.00 0.00 3.85
814 846 1.811266 CCACGAAGATGCACCGAGG 60.811 63.158 0.00 0.00 0.00 4.63
815 847 1.811266 CCCACGAAGATGCACCGAG 60.811 63.158 0.00 0.00 0.00 4.63
816 848 2.264480 CCCACGAAGATGCACCGA 59.736 61.111 0.00 0.00 0.00 4.69
817 849 3.499737 GCCCACGAAGATGCACCG 61.500 66.667 0.00 0.00 0.00 4.94
818 850 3.134127 GGCCCACGAAGATGCACC 61.134 66.667 0.00 0.00 0.00 5.01
838 870 2.311688 ATAAGAGCCGTTCGCCTGGG 62.312 60.000 0.00 0.00 38.78 4.45
839 871 0.462047 AATAAGAGCCGTTCGCCTGG 60.462 55.000 0.00 0.00 38.78 4.45
840 872 2.218953 TAATAAGAGCCGTTCGCCTG 57.781 50.000 0.00 0.00 38.78 4.85
841 873 2.102588 ACATAATAAGAGCCGTTCGCCT 59.897 45.455 0.00 0.00 38.78 5.52
842 874 2.221055 CACATAATAAGAGCCGTTCGCC 59.779 50.000 0.00 0.00 38.78 5.54
843 875 2.348591 GCACATAATAAGAGCCGTTCGC 60.349 50.000 0.00 0.00 37.98 4.70
844 876 2.221055 GGCACATAATAAGAGCCGTTCG 59.779 50.000 0.00 0.00 33.22 3.95
845 877 3.467803 AGGCACATAATAAGAGCCGTTC 58.532 45.455 0.00 0.00 45.73 3.95
846 878 3.118408 TGAGGCACATAATAAGAGCCGTT 60.118 43.478 0.00 0.00 45.73 4.44
847 879 2.434336 TGAGGCACATAATAAGAGCCGT 59.566 45.455 0.00 0.00 45.73 5.68
848 880 2.802816 GTGAGGCACATAATAAGAGCCG 59.197 50.000 0.00 0.00 45.73 5.52
849 881 3.142174 GGTGAGGCACATAATAAGAGCC 58.858 50.000 0.00 0.00 42.18 4.70
850 882 4.078639 AGGTGAGGCACATAATAAGAGC 57.921 45.455 0.00 0.00 35.86 4.09
851 883 4.818546 CCAAGGTGAGGCACATAATAAGAG 59.181 45.833 0.00 0.00 35.86 2.85
852 884 4.780815 CCAAGGTGAGGCACATAATAAGA 58.219 43.478 0.00 0.00 35.86 2.10
884 916 1.654220 CTGTTGGTTGAGGCGGTTG 59.346 57.895 0.00 0.00 0.00 3.77
1556 1671 6.088616 GTGCAAATTTAGCAAGAACAGATCAC 59.911 38.462 14.21 0.00 44.64 3.06
1571 1687 6.481976 TCGAGAAGTCAAGAAGTGCAAATTTA 59.518 34.615 0.00 0.00 0.00 1.40
1574 1690 4.380531 TCGAGAAGTCAAGAAGTGCAAAT 58.619 39.130 0.00 0.00 0.00 2.32
1575 1691 3.792401 TCGAGAAGTCAAGAAGTGCAAA 58.208 40.909 0.00 0.00 0.00 3.68
1576 1692 3.068165 TCTCGAGAAGTCAAGAAGTGCAA 59.932 43.478 14.01 0.00 0.00 4.08
1577 1693 2.623416 TCTCGAGAAGTCAAGAAGTGCA 59.377 45.455 14.01 0.00 0.00 4.57
1578 1694 3.290308 TCTCGAGAAGTCAAGAAGTGC 57.710 47.619 14.01 0.00 0.00 4.40
1579 1695 6.388259 GAAATCTCGAGAAGTCAAGAAGTG 57.612 41.667 20.91 0.00 0.00 3.16
1594 1710 4.781570 GCAGAAGCAAGAATCGAAATCTCG 60.782 45.833 4.75 0.00 42.96 4.04
1595 1711 4.332268 AGCAGAAGCAAGAATCGAAATCTC 59.668 41.667 4.75 0.00 45.49 2.75
1596 1712 4.094590 CAGCAGAAGCAAGAATCGAAATCT 59.905 41.667 0.00 0.00 45.49 2.40
1597 1713 4.093998 TCAGCAGAAGCAAGAATCGAAATC 59.906 41.667 0.00 0.00 45.49 2.17
1598 1714 4.005650 TCAGCAGAAGCAAGAATCGAAAT 58.994 39.130 0.00 0.00 45.49 2.17
1599 1715 3.402110 TCAGCAGAAGCAAGAATCGAAA 58.598 40.909 0.00 0.00 45.49 3.46
1600 1716 3.044235 TCAGCAGAAGCAAGAATCGAA 57.956 42.857 0.00 0.00 45.49 3.71
1601 1717 2.738846 GTTCAGCAGAAGCAAGAATCGA 59.261 45.455 0.00 0.00 45.49 3.59
1602 1718 2.481568 TGTTCAGCAGAAGCAAGAATCG 59.518 45.455 0.00 0.00 45.49 3.34
1603 1719 4.698583 ATGTTCAGCAGAAGCAAGAATC 57.301 40.909 0.00 0.00 45.49 2.52
1608 1724 3.503363 CAGGTTATGTTCAGCAGAAGCAA 59.497 43.478 0.83 0.00 45.88 3.91
1616 1732 2.813754 TGAGTTGCAGGTTATGTTCAGC 59.186 45.455 0.00 0.00 0.00 4.26
1622 1738 2.553602 TGCAGTTGAGTTGCAGGTTATG 59.446 45.455 0.00 0.00 45.89 1.90
1623 1739 2.862541 TGCAGTTGAGTTGCAGGTTAT 58.137 42.857 0.00 0.00 45.89 1.89
1624 1740 2.340210 TGCAGTTGAGTTGCAGGTTA 57.660 45.000 0.00 0.00 45.89 2.85
1626 1742 4.984194 TGCAGTTGAGTTGCAGGT 57.016 50.000 0.00 0.00 45.89 4.00
1630 1746 0.040958 CGGTTCTGCAGTTGAGTTGC 60.041 55.000 14.67 0.00 41.86 4.17
1631 1747 0.040958 GCGGTTCTGCAGTTGAGTTG 60.041 55.000 14.67 0.00 34.15 3.16
1632 1748 1.498865 CGCGGTTCTGCAGTTGAGTT 61.499 55.000 14.67 0.00 34.15 3.01
1653 1834 0.948141 GGCCGAGCATGATGTAGAGC 60.948 60.000 0.00 0.00 0.00 4.09
1684 2125 1.983907 CTCGCACGAACACGATCAG 59.016 57.895 0.00 0.00 37.72 2.90
1706 3104 4.203076 CGTAGAACCCCTCGGCGG 62.203 72.222 7.21 0.00 0.00 6.13
1771 3172 1.379977 CCAGCTCGTCCCTCAGGTA 60.380 63.158 0.00 0.00 0.00 3.08
1988 3398 6.808008 TCTTGTCACCATCAAGAAATCTTC 57.192 37.500 5.99 0.00 45.14 2.87
1997 3407 3.882888 GGTTCACTTCTTGTCACCATCAA 59.117 43.478 0.00 0.00 32.58 2.57
2005 3415 3.382048 ACTACCGGTTCACTTCTTGTC 57.618 47.619 15.04 0.00 0.00 3.18
2006 3416 3.832615 AACTACCGGTTCACTTCTTGT 57.167 42.857 15.04 0.00 31.69 3.16
2007 3417 4.573201 TCAAAACTACCGGTTCACTTCTTG 59.427 41.667 15.04 8.16 37.12 3.02
2009 3419 4.411256 TCAAAACTACCGGTTCACTTCT 57.589 40.909 15.04 0.00 37.12 2.85
2010 3420 5.237779 TCAATCAAAACTACCGGTTCACTTC 59.762 40.000 15.04 0.00 37.12 3.01
2011 3421 5.127491 TCAATCAAAACTACCGGTTCACTT 58.873 37.500 15.04 0.00 37.12 3.16
2013 3423 5.048991 ACATCAATCAAAACTACCGGTTCAC 60.049 40.000 15.04 0.00 37.12 3.18
2014 3424 5.067273 ACATCAATCAAAACTACCGGTTCA 58.933 37.500 15.04 0.00 37.12 3.18
2015 3425 5.622770 ACATCAATCAAAACTACCGGTTC 57.377 39.130 15.04 0.00 37.12 3.62
2016 3426 6.235664 ACTACATCAATCAAAACTACCGGTT 58.764 36.000 15.04 0.00 40.28 4.44
2017 3427 5.801380 ACTACATCAATCAAAACTACCGGT 58.199 37.500 13.98 13.98 0.00 5.28
2018 3428 6.737254 AACTACATCAATCAAAACTACCGG 57.263 37.500 0.00 0.00 0.00 5.28
2088 3535 9.535878 CCTTTTCTCCTCATACTATAACTGTTC 57.464 37.037 0.00 0.00 0.00 3.18
2101 3548 7.229506 CAGTTTCAGTTAACCTTTTCTCCTCAT 59.770 37.037 0.88 0.00 0.00 2.90
2108 3584 8.456471 ACTACAACAGTTTCAGTTAACCTTTTC 58.544 33.333 0.88 0.00 31.59 2.29
2113 3589 6.759827 TCAGACTACAACAGTTTCAGTTAACC 59.240 38.462 0.88 0.00 37.72 2.85
2189 3665 2.843701 AGCCACGGATCATCTTTCATC 58.156 47.619 0.00 0.00 0.00 2.92
2203 3679 7.011950 TCCATAATGATTTGTTAACTAGCCACG 59.988 37.037 7.22 0.00 0.00 4.94
2251 4556 7.817478 TCTGTTAACGCTGAAAAGAGATGAATA 59.183 33.333 0.26 0.00 0.00 1.75
2269 4574 8.088981 ACGGATATCACCATCTTATCTGTTAAC 58.911 37.037 4.83 0.00 38.28 2.01
2278 4583 7.228507 CCAAATCAAACGGATATCACCATCTTA 59.771 37.037 4.83 0.00 34.28 2.10
2314 4619 9.659830 CTGTATTTAGTTTAGTGTTGTTGGAAC 57.340 33.333 0.00 0.00 0.00 3.62
2363 4668 8.324306 AGGACATGAACAATCTAAATCTCAGAA 58.676 33.333 0.00 0.00 0.00 3.02
2387 4692 2.255770 AAAGAGGGTCAGTAGGGAGG 57.744 55.000 0.00 0.00 0.00 4.30
2399 4704 4.394300 CAGCACATTTCTCACTAAAGAGGG 59.606 45.833 0.00 0.00 36.30 4.30
2409 4714 3.141398 GAGACCAACAGCACATTTCTCA 58.859 45.455 0.00 0.00 0.00 3.27
2419 4724 1.086634 GCAGATCCGAGACCAACAGC 61.087 60.000 0.00 0.00 0.00 4.40
2491 4800 9.384764 GATTAGCACTCCACTAAAGTAAAATCT 57.615 33.333 0.00 0.00 33.54 2.40
2540 4849 6.785488 TTTCTACAAGACTGCAACAGTATG 57.215 37.500 0.00 5.93 45.44 2.39
2731 5064 4.914983 TCTGCAAAGGAGAAATGAGATGT 58.085 39.130 0.00 0.00 0.00 3.06
2794 5325 6.537453 TTCTAATCTTCTCAGGTGAAGGAG 57.463 41.667 10.24 6.71 42.54 3.69
2795 5326 7.502060 AATTCTAATCTTCTCAGGTGAAGGA 57.498 36.000 10.24 0.00 42.54 3.36
2796 5327 9.270640 CATAATTCTAATCTTCTCAGGTGAAGG 57.729 37.037 10.24 0.00 42.54 3.46
2797 5328 9.270640 CCATAATTCTAATCTTCTCAGGTGAAG 57.729 37.037 5.05 5.05 43.36 3.02
2798 5329 8.992349 TCCATAATTCTAATCTTCTCAGGTGAA 58.008 33.333 0.00 0.00 0.00 3.18
2799 5330 8.553085 TCCATAATTCTAATCTTCTCAGGTGA 57.447 34.615 0.00 0.00 0.00 4.02
2800 5331 8.428063 ACTCCATAATTCTAATCTTCTCAGGTG 58.572 37.037 0.00 0.00 0.00 4.00
2801 5332 8.560124 ACTCCATAATTCTAATCTTCTCAGGT 57.440 34.615 0.00 0.00 0.00 4.00
2821 5352 8.585881 GCAAGGATATTGTAAGATACTACTCCA 58.414 37.037 0.00 0.00 0.00 3.86
2822 5353 8.585881 TGCAAGGATATTGTAAGATACTACTCC 58.414 37.037 0.00 0.00 0.00 3.85
2823 5354 9.413048 GTGCAAGGATATTGTAAGATACTACTC 57.587 37.037 0.00 0.00 0.00 2.59
2824 5355 8.924303 TGTGCAAGGATATTGTAAGATACTACT 58.076 33.333 0.00 0.00 0.00 2.57
2825 5356 9.712305 ATGTGCAAGGATATTGTAAGATACTAC 57.288 33.333 0.00 0.00 0.00 2.73
2892 5423 2.939103 CAGTTAGGCAGCAGACCAATAC 59.061 50.000 0.00 0.00 0.00 1.89
3113 5653 6.234177 AGTTTAGCTAGCAGAAGAAACACAT 58.766 36.000 18.83 1.57 30.89 3.21
3378 6008 5.875359 ACTAACAGCAGAACTACCAAATAGC 59.125 40.000 0.00 0.00 33.73 2.97
3477 6113 3.695830 ATGGCGGGTCATATACGAAAT 57.304 42.857 0.00 0.00 0.00 2.17
3556 6192 6.197168 AGATAGAGGGGCAAATTCATTTTGA 58.803 36.000 2.42 0.00 46.36 2.69
3577 6213 3.375699 AGTGTCTCGGTAATGGGAAGAT 58.624 45.455 0.00 0.00 0.00 2.40
3602 6238 2.033141 TGCAGCTTCAGGTCCAGC 59.967 61.111 0.00 0.00 36.16 4.85
3626 6262 3.123620 CCTGCGCCTGCTGACTTC 61.124 66.667 4.18 0.00 42.14 3.01
3631 6267 0.955428 TTAGTTTCCTGCGCCTGCTG 60.955 55.000 4.18 0.00 43.34 4.41
3679 6317 7.886629 AAATGGTATCAAGAGCACATATTGT 57.113 32.000 0.00 0.00 0.00 2.71
3725 6365 0.610174 TGCAGCCCAAACAAACACAA 59.390 45.000 0.00 0.00 0.00 3.33
3782 6422 2.861462 CTATCAGCTATAGCCGCTCC 57.139 55.000 21.17 0.00 43.38 4.70
3823 6463 2.097629 CCAAATGACTGCATCTCAGCTG 59.902 50.000 7.63 7.63 46.76 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.