Multiple sequence alignment - TraesCS7B01G018600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G018600 | chr7B | 100.000 | 9962 | 0 | 0 | 1 | 9962 | 15601835 | 15591874 | 0.000000e+00 | 18397.0 |
1 | TraesCS7B01G018600 | chr7B | 88.079 | 755 | 35 | 25 | 261 | 986 | 150664703 | 150663975 | 0.000000e+00 | 845.0 |
2 | TraesCS7B01G018600 | chr7B | 87.698 | 756 | 37 | 25 | 261 | 986 | 113942984 | 113942255 | 0.000000e+00 | 830.0 |
3 | TraesCS7B01G018600 | chr7B | 88.246 | 536 | 44 | 8 | 4999 | 5534 | 527620424 | 527619908 | 3.060000e-174 | 623.0 |
4 | TraesCS7B01G018600 | chr7B | 97.222 | 72 | 2 | 0 | 9752 | 9823 | 15592017 | 15591946 | 1.360000e-23 | 122.0 |
5 | TraesCS7B01G018600 | chr7B | 97.222 | 72 | 2 | 0 | 9819 | 9890 | 15592084 | 15592013 | 1.360000e-23 | 122.0 |
6 | TraesCS7B01G018600 | chr7B | 98.276 | 58 | 1 | 0 | 100 | 157 | 113943050 | 113942993 | 1.770000e-17 | 102.0 |
7 | TraesCS7B01G018600 | chr7D | 97.682 | 3883 | 75 | 7 | 825 | 4694 | 72938380 | 72942260 | 0.000000e+00 | 6658.0 |
8 | TraesCS7B01G018600 | chr7D | 95.670 | 3995 | 116 | 26 | 4694 | 8669 | 72942329 | 72946285 | 0.000000e+00 | 6366.0 |
9 | TraesCS7B01G018600 | chr7D | 95.710 | 909 | 30 | 5 | 8672 | 9579 | 72946385 | 72947285 | 0.000000e+00 | 1454.0 |
10 | TraesCS7B01G018600 | chr7D | 86.424 | 604 | 30 | 14 | 1 | 592 | 72937458 | 72938021 | 1.840000e-171 | 614.0 |
11 | TraesCS7B01G018600 | chr7D | 100.000 | 35 | 0 | 0 | 9653 | 9687 | 72947399 | 72947433 | 2.320000e-06 | 65.8 |
12 | TraesCS7B01G018600 | chr7A | 95.027 | 3519 | 137 | 19 | 825 | 4323 | 77440485 | 77436985 | 0.000000e+00 | 5494.0 |
13 | TraesCS7B01G018600 | chr7A | 90.573 | 838 | 43 | 13 | 8774 | 9579 | 77435197 | 77434364 | 0.000000e+00 | 1077.0 |
14 | TraesCS7B01G018600 | chr7A | 92.653 | 735 | 41 | 6 | 7943 | 8669 | 77436091 | 77435362 | 0.000000e+00 | 1046.0 |
15 | TraesCS7B01G018600 | chr7A | 89.631 | 704 | 34 | 22 | 81 | 772 | 77441532 | 77440856 | 0.000000e+00 | 859.0 |
16 | TraesCS7B01G018600 | chr7A | 94.400 | 375 | 15 | 5 | 4321 | 4694 | 77436816 | 77436447 | 1.120000e-158 | 571.0 |
17 | TraesCS7B01G018600 | chr7A | 89.206 | 315 | 21 | 7 | 4694 | 5000 | 77436380 | 77436071 | 2.030000e-101 | 381.0 |
18 | TraesCS7B01G018600 | chr7A | 89.583 | 144 | 14 | 1 | 9819 | 9962 | 77434199 | 77434057 | 2.210000e-41 | 182.0 |
19 | TraesCS7B01G018600 | chr7A | 91.026 | 78 | 7 | 0 | 8668 | 8745 | 77435269 | 77435192 | 1.370000e-18 | 106.0 |
20 | TraesCS7B01G018600 | chr7A | 92.857 | 56 | 2 | 2 | 9384 | 9437 | 212558765 | 212558710 | 8.290000e-11 | 80.5 |
21 | TraesCS7B01G018600 | chr2D | 95.404 | 2959 | 117 | 7 | 4999 | 7946 | 106329751 | 106332701 | 0.000000e+00 | 4693.0 |
22 | TraesCS7B01G018600 | chr2D | 94.589 | 2957 | 138 | 12 | 4999 | 7941 | 456321993 | 456319045 | 0.000000e+00 | 4554.0 |
23 | TraesCS7B01G018600 | chr2D | 94.444 | 54 | 2 | 1 | 9384 | 9436 | 439162954 | 439162901 | 2.310000e-11 | 82.4 |
24 | TraesCS7B01G018600 | chr2D | 86.486 | 74 | 5 | 5 | 9379 | 9447 | 507160503 | 507160430 | 1.070000e-09 | 76.8 |
25 | TraesCS7B01G018600 | chr2D | 78.125 | 96 | 16 | 5 | 9824 | 9916 | 543213457 | 543213550 | 1.000000e-03 | 56.5 |
26 | TraesCS7B01G018600 | chr3A | 95.375 | 2962 | 116 | 8 | 4999 | 7947 | 217720283 | 217717330 | 0.000000e+00 | 4691.0 |
27 | TraesCS7B01G018600 | chr3A | 90.013 | 741 | 45 | 10 | 5000 | 5734 | 290433184 | 290432467 | 0.000000e+00 | 931.0 |
28 | TraesCS7B01G018600 | chr3A | 87.143 | 70 | 3 | 6 | 9384 | 9447 | 200297239 | 200297170 | 3.860000e-09 | 75.0 |
29 | TraesCS7B01G018600 | chr2A | 95.327 | 2953 | 119 | 7 | 5001 | 7942 | 421216335 | 421219279 | 0.000000e+00 | 4671.0 |
30 | TraesCS7B01G018600 | chr2A | 95.528 | 2728 | 110 | 7 | 5221 | 7940 | 179280305 | 179283028 | 0.000000e+00 | 4351.0 |
31 | TraesCS7B01G018600 | chr2A | 87.169 | 756 | 42 | 23 | 261 | 986 | 732304578 | 732303848 | 0.000000e+00 | 808.0 |
32 | TraesCS7B01G018600 | chr2A | 98.276 | 58 | 1 | 0 | 100 | 157 | 732304644 | 732304587 | 1.770000e-17 | 102.0 |
33 | TraesCS7B01G018600 | chr4D | 95.169 | 2960 | 122 | 10 | 4998 | 7945 | 83143915 | 83146865 | 0.000000e+00 | 4654.0 |
34 | TraesCS7B01G018600 | chr4D | 95.203 | 2835 | 114 | 8 | 4999 | 7819 | 323566067 | 323563241 | 0.000000e+00 | 4462.0 |
35 | TraesCS7B01G018600 | chr4D | 92.727 | 55 | 2 | 2 | 9384 | 9436 | 23894667 | 23894721 | 2.980000e-10 | 78.7 |
36 | TraesCS7B01G018600 | chr4D | 92.727 | 55 | 2 | 2 | 9384 | 9436 | 196812115 | 196812169 | 2.980000e-10 | 78.7 |
37 | TraesCS7B01G018600 | chr4D | 94.118 | 51 | 2 | 1 | 9387 | 9436 | 171777969 | 171778019 | 1.070000e-09 | 76.8 |
38 | TraesCS7B01G018600 | chr4D | 91.071 | 56 | 2 | 3 | 9384 | 9436 | 109665280 | 109665335 | 1.390000e-08 | 73.1 |
39 | TraesCS7B01G018600 | chr4D | 90.909 | 55 | 3 | 2 | 9384 | 9436 | 170312107 | 170312053 | 1.390000e-08 | 73.1 |
40 | TraesCS7B01G018600 | chr4D | 91.071 | 56 | 2 | 3 | 9384 | 9436 | 218162217 | 218162272 | 1.390000e-08 | 73.1 |
41 | TraesCS7B01G018600 | chr4D | 88.710 | 62 | 2 | 5 | 9384 | 9440 | 130836769 | 130836830 | 4.990000e-08 | 71.3 |
42 | TraesCS7B01G018600 | chr4D | 88.525 | 61 | 3 | 4 | 9384 | 9440 | 196659047 | 196658987 | 4.990000e-08 | 71.3 |
43 | TraesCS7B01G018600 | chr4D | 88.710 | 62 | 2 | 5 | 9384 | 9440 | 361491086 | 361491025 | 4.990000e-08 | 71.3 |
44 | TraesCS7B01G018600 | chr6A | 95.198 | 2957 | 117 | 11 | 4999 | 7946 | 258134901 | 258137841 | 0.000000e+00 | 4650.0 |
45 | TraesCS7B01G018600 | chr6A | 95.164 | 2957 | 120 | 9 | 5001 | 7946 | 58018201 | 58015257 | 0.000000e+00 | 4647.0 |
46 | TraesCS7B01G018600 | chr6A | 94.356 | 2959 | 144 | 9 | 4999 | 7943 | 567148004 | 567150953 | 0.000000e+00 | 4518.0 |
47 | TraesCS7B01G018600 | chrUn | 94.747 | 2970 | 129 | 12 | 4999 | 7949 | 27369561 | 27366600 | 0.000000e+00 | 4595.0 |
48 | TraesCS7B01G018600 | chrUn | 87.815 | 755 | 38 | 23 | 261 | 986 | 126388233 | 126388962 | 0.000000e+00 | 835.0 |
49 | TraesCS7B01G018600 | chrUn | 100.000 | 408 | 0 | 0 | 2339 | 2746 | 477927517 | 477927110 | 0.000000e+00 | 754.0 |
50 | TraesCS7B01G018600 | chrUn | 98.276 | 58 | 1 | 0 | 100 | 157 | 126388167 | 126388224 | 1.770000e-17 | 102.0 |
51 | TraesCS7B01G018600 | chrUn | 90.909 | 55 | 3 | 2 | 9384 | 9436 | 58890477 | 58890531 | 1.390000e-08 | 73.1 |
52 | TraesCS7B01G018600 | chrUn | 91.071 | 56 | 2 | 3 | 9384 | 9436 | 115305275 | 115305330 | 1.390000e-08 | 73.1 |
53 | TraesCS7B01G018600 | chrUn | 90.909 | 55 | 3 | 2 | 9384 | 9436 | 115328260 | 115328314 | 1.390000e-08 | 73.1 |
54 | TraesCS7B01G018600 | chrUn | 87.500 | 56 | 4 | 3 | 9384 | 9436 | 49522521 | 49522466 | 3.000000e-05 | 62.1 |
55 | TraesCS7B01G018600 | chrUn | 85.714 | 63 | 3 | 6 | 9384 | 9440 | 358606959 | 358606897 | 3.000000e-05 | 62.1 |
56 | TraesCS7B01G018600 | chrUn | 85.714 | 63 | 3 | 6 | 9384 | 9440 | 385168437 | 385168499 | 3.000000e-05 | 62.1 |
57 | TraesCS7B01G018600 | chr6D | 94.824 | 2956 | 125 | 12 | 4999 | 7940 | 158353841 | 158356782 | 0.000000e+00 | 4586.0 |
58 | TraesCS7B01G018600 | chr6D | 94.231 | 52 | 1 | 2 | 9387 | 9436 | 170707169 | 170707118 | 2.980000e-10 | 78.7 |
59 | TraesCS7B01G018600 | chr6D | 94.118 | 51 | 2 | 1 | 9387 | 9436 | 216988880 | 216988830 | 1.070000e-09 | 76.8 |
60 | TraesCS7B01G018600 | chr6D | 90.164 | 61 | 2 | 4 | 9384 | 9440 | 271995383 | 271995323 | 1.070000e-09 | 76.8 |
61 | TraesCS7B01G018600 | chr6D | 90.000 | 60 | 3 | 3 | 9384 | 9440 | 49004549 | 49004490 | 3.860000e-09 | 75.0 |
62 | TraesCS7B01G018600 | chr1B | 93.619 | 2962 | 158 | 15 | 4999 | 7944 | 177180042 | 177182988 | 0.000000e+00 | 4394.0 |
63 | TraesCS7B01G018600 | chr1B | 86.490 | 755 | 48 | 28 | 261 | 986 | 61192962 | 61192233 | 0.000000e+00 | 780.0 |
64 | TraesCS7B01G018600 | chr1B | 98.276 | 58 | 1 | 0 | 100 | 157 | 61193028 | 61192971 | 1.770000e-17 | 102.0 |
65 | TraesCS7B01G018600 | chr1B | 90.323 | 62 | 1 | 5 | 9384 | 9440 | 315690726 | 315690787 | 1.070000e-09 | 76.8 |
66 | TraesCS7B01G018600 | chr3B | 88.079 | 755 | 36 | 23 | 261 | 986 | 777668980 | 777669709 | 0.000000e+00 | 846.0 |
67 | TraesCS7B01G018600 | chr3B | 90.034 | 582 | 24 | 9 | 261 | 833 | 807473989 | 807474545 | 0.000000e+00 | 723.0 |
68 | TraesCS7B01G018600 | chr3B | 96.552 | 58 | 2 | 0 | 100 | 157 | 807473923 | 807473980 | 8.240000e-16 | 97.1 |
69 | TraesCS7B01G018600 | chr5B | 87.682 | 755 | 39 | 23 | 261 | 986 | 520287064 | 520286335 | 0.000000e+00 | 830.0 |
70 | TraesCS7B01G018600 | chr3D | 91.222 | 581 | 19 | 9 | 261 | 833 | 9498390 | 9497834 | 0.000000e+00 | 761.0 |
71 | TraesCS7B01G018600 | chr3D | 100.000 | 58 | 0 | 0 | 100 | 157 | 9498456 | 9498399 | 3.800000e-19 | 108.0 |
72 | TraesCS7B01G018600 | chr3D | 91.525 | 59 | 4 | 1 | 9379 | 9436 | 289980093 | 289980151 | 8.290000e-11 | 80.5 |
73 | TraesCS7B01G018600 | chr3D | 92.857 | 56 | 1 | 3 | 9384 | 9436 | 247982624 | 247982569 | 2.980000e-10 | 78.7 |
74 | TraesCS7B01G018600 | chr3D | 92.857 | 56 | 1 | 3 | 9384 | 9436 | 265638717 | 265638772 | 2.980000e-10 | 78.7 |
75 | TraesCS7B01G018600 | chr3D | 92.593 | 54 | 3 | 1 | 9384 | 9436 | 356497658 | 356497711 | 1.070000e-09 | 76.8 |
76 | TraesCS7B01G018600 | chr3D | 87.879 | 66 | 4 | 4 | 9379 | 9440 | 332374858 | 332374793 | 3.860000e-09 | 75.0 |
77 | TraesCS7B01G018600 | chr3D | 87.692 | 65 | 4 | 4 | 9387 | 9447 | 406570778 | 406570842 | 1.390000e-08 | 73.1 |
78 | TraesCS7B01G018600 | chr4B | 86.773 | 688 | 37 | 23 | 328 | 986 | 672588537 | 672587875 | 0.000000e+00 | 717.0 |
79 | TraesCS7B01G018600 | chr4B | 92.857 | 56 | 1 | 3 | 9384 | 9436 | 280124499 | 280124444 | 2.980000e-10 | 78.7 |
80 | TraesCS7B01G018600 | chr2B | 90.741 | 162 | 5 | 1 | 825 | 986 | 506806650 | 506806499 | 3.650000e-49 | 207.0 |
81 | TraesCS7B01G018600 | chr2B | 98.276 | 58 | 1 | 0 | 100 | 157 | 506806891 | 506806834 | 1.770000e-17 | 102.0 |
82 | TraesCS7B01G018600 | chr1A | 80.147 | 136 | 22 | 5 | 9824 | 9956 | 542887585 | 542887452 | 8.240000e-16 | 97.1 |
83 | TraesCS7B01G018600 | chr5A | 94.340 | 53 | 2 | 1 | 9384 | 9435 | 268958312 | 268958260 | 8.290000e-11 | 80.5 |
84 | TraesCS7B01G018600 | chr5A | 84.416 | 77 | 6 | 6 | 9387 | 9457 | 392271448 | 392271372 | 4.990000e-08 | 71.3 |
85 | TraesCS7B01G018600 | chr1D | 92.857 | 56 | 1 | 3 | 9384 | 9436 | 148102635 | 148102690 | 2.980000e-10 | 78.7 |
86 | TraesCS7B01G018600 | chr1D | 88.710 | 62 | 2 | 5 | 9384 | 9440 | 122889001 | 122889062 | 4.990000e-08 | 71.3 |
87 | TraesCS7B01G018600 | chr1D | 88.525 | 61 | 3 | 4 | 9384 | 9440 | 171620095 | 171620035 | 4.990000e-08 | 71.3 |
88 | TraesCS7B01G018600 | chr6B | 90.000 | 60 | 4 | 2 | 9379 | 9436 | 549967646 | 549967705 | 1.070000e-09 | 76.8 |
89 | TraesCS7B01G018600 | chr5D | 90.164 | 61 | 2 | 4 | 9384 | 9440 | 478773289 | 478773349 | 1.070000e-09 | 76.8 |
90 | TraesCS7B01G018600 | chr4A | 88.235 | 68 | 3 | 5 | 9384 | 9447 | 175027088 | 175027022 | 1.070000e-09 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G018600 | chr7B | 15591874 | 15601835 | 9961 | True | 18397.00 | 18397 | 100.000000 | 1 | 9962 | 1 | chr7B.!!$R1 | 9961 |
1 | TraesCS7B01G018600 | chr7B | 150663975 | 150664703 | 728 | True | 845.00 | 845 | 88.079000 | 261 | 986 | 1 | chr7B.!!$R2 | 725 |
2 | TraesCS7B01G018600 | chr7B | 527619908 | 527620424 | 516 | True | 623.00 | 623 | 88.246000 | 4999 | 5534 | 1 | chr7B.!!$R3 | 535 |
3 | TraesCS7B01G018600 | chr7B | 113942255 | 113943050 | 795 | True | 466.00 | 830 | 92.987000 | 100 | 986 | 2 | chr7B.!!$R5 | 886 |
4 | TraesCS7B01G018600 | chr7D | 72937458 | 72947433 | 9975 | False | 3031.56 | 6658 | 95.097200 | 1 | 9687 | 5 | chr7D.!!$F1 | 9686 |
5 | TraesCS7B01G018600 | chr7A | 77434057 | 77441532 | 7475 | True | 1214.50 | 5494 | 91.512375 | 81 | 9962 | 8 | chr7A.!!$R2 | 9881 |
6 | TraesCS7B01G018600 | chr2D | 106329751 | 106332701 | 2950 | False | 4693.00 | 4693 | 95.404000 | 4999 | 7946 | 1 | chr2D.!!$F1 | 2947 |
7 | TraesCS7B01G018600 | chr2D | 456319045 | 456321993 | 2948 | True | 4554.00 | 4554 | 94.589000 | 4999 | 7941 | 1 | chr2D.!!$R2 | 2942 |
8 | TraesCS7B01G018600 | chr3A | 217717330 | 217720283 | 2953 | True | 4691.00 | 4691 | 95.375000 | 4999 | 7947 | 1 | chr3A.!!$R2 | 2948 |
9 | TraesCS7B01G018600 | chr3A | 290432467 | 290433184 | 717 | True | 931.00 | 931 | 90.013000 | 5000 | 5734 | 1 | chr3A.!!$R3 | 734 |
10 | TraesCS7B01G018600 | chr2A | 421216335 | 421219279 | 2944 | False | 4671.00 | 4671 | 95.327000 | 5001 | 7942 | 1 | chr2A.!!$F2 | 2941 |
11 | TraesCS7B01G018600 | chr2A | 179280305 | 179283028 | 2723 | False | 4351.00 | 4351 | 95.528000 | 5221 | 7940 | 1 | chr2A.!!$F1 | 2719 |
12 | TraesCS7B01G018600 | chr2A | 732303848 | 732304644 | 796 | True | 455.00 | 808 | 92.722500 | 100 | 986 | 2 | chr2A.!!$R1 | 886 |
13 | TraesCS7B01G018600 | chr4D | 83143915 | 83146865 | 2950 | False | 4654.00 | 4654 | 95.169000 | 4998 | 7945 | 1 | chr4D.!!$F2 | 2947 |
14 | TraesCS7B01G018600 | chr4D | 323563241 | 323566067 | 2826 | True | 4462.00 | 4462 | 95.203000 | 4999 | 7819 | 1 | chr4D.!!$R3 | 2820 |
15 | TraesCS7B01G018600 | chr6A | 258134901 | 258137841 | 2940 | False | 4650.00 | 4650 | 95.198000 | 4999 | 7946 | 1 | chr6A.!!$F1 | 2947 |
16 | TraesCS7B01G018600 | chr6A | 58015257 | 58018201 | 2944 | True | 4647.00 | 4647 | 95.164000 | 5001 | 7946 | 1 | chr6A.!!$R1 | 2945 |
17 | TraesCS7B01G018600 | chr6A | 567148004 | 567150953 | 2949 | False | 4518.00 | 4518 | 94.356000 | 4999 | 7943 | 1 | chr6A.!!$F2 | 2944 |
18 | TraesCS7B01G018600 | chrUn | 27366600 | 27369561 | 2961 | True | 4595.00 | 4595 | 94.747000 | 4999 | 7949 | 1 | chrUn.!!$R1 | 2950 |
19 | TraesCS7B01G018600 | chrUn | 126388167 | 126388962 | 795 | False | 468.50 | 835 | 93.045500 | 100 | 986 | 2 | chrUn.!!$F5 | 886 |
20 | TraesCS7B01G018600 | chr6D | 158353841 | 158356782 | 2941 | False | 4586.00 | 4586 | 94.824000 | 4999 | 7940 | 1 | chr6D.!!$F1 | 2941 |
21 | TraesCS7B01G018600 | chr1B | 177180042 | 177182988 | 2946 | False | 4394.00 | 4394 | 93.619000 | 4999 | 7944 | 1 | chr1B.!!$F1 | 2945 |
22 | TraesCS7B01G018600 | chr1B | 61192233 | 61193028 | 795 | True | 441.00 | 780 | 92.383000 | 100 | 986 | 2 | chr1B.!!$R1 | 886 |
23 | TraesCS7B01G018600 | chr3B | 777668980 | 777669709 | 729 | False | 846.00 | 846 | 88.079000 | 261 | 986 | 1 | chr3B.!!$F1 | 725 |
24 | TraesCS7B01G018600 | chr3B | 807473923 | 807474545 | 622 | False | 410.05 | 723 | 93.293000 | 100 | 833 | 2 | chr3B.!!$F2 | 733 |
25 | TraesCS7B01G018600 | chr5B | 520286335 | 520287064 | 729 | True | 830.00 | 830 | 87.682000 | 261 | 986 | 1 | chr5B.!!$R1 | 725 |
26 | TraesCS7B01G018600 | chr3D | 9497834 | 9498456 | 622 | True | 434.50 | 761 | 95.611000 | 100 | 833 | 2 | chr3D.!!$R3 | 733 |
27 | TraesCS7B01G018600 | chr4B | 672587875 | 672588537 | 662 | True | 717.00 | 717 | 86.773000 | 328 | 986 | 1 | chr4B.!!$R2 | 658 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
670 | 883 | 0.673333 | TGCAGTAAGTCACATGGGCG | 60.673 | 55.000 | 0.00 | 0.0 | 0.00 | 6.13 | F |
1059 | 1590 | 0.238289 | GCATCGTGTTTGTGACTGGG | 59.762 | 55.000 | 0.00 | 0.0 | 0.00 | 4.45 | F |
2022 | 2553 | 1.285950 | GGAAACAGTGGCTTTCCGC | 59.714 | 57.895 | 8.94 | 0.0 | 37.89 | 5.54 | F |
3360 | 3902 | 2.064434 | TGGTTCAGCATGTTTGGACA | 57.936 | 45.000 | 11.38 | 0.0 | 40.71 | 4.02 | F |
3416 | 3958 | 0.737219 | GCTGCTTGATGTTGGCTAGG | 59.263 | 55.000 | 0.00 | 0.0 | 0.00 | 3.02 | F |
3896 | 4447 | 1.073964 | CAGTTGTGACAGCAGATCGG | 58.926 | 55.000 | 1.54 | 0.0 | 0.00 | 4.18 | F |
5756 | 6564 | 0.238553 | GTTGCTGACTTCCGCTTTCC | 59.761 | 55.000 | 0.00 | 0.0 | 0.00 | 3.13 | F |
6746 | 7562 | 0.038166 | GTTTCATGCCTGGGAGGTCA | 59.962 | 55.000 | 0.00 | 0.0 | 37.80 | 4.02 | F |
7022 | 7838 | 1.004044 | CATCAGGGGTCAGCTTTGAGT | 59.996 | 52.381 | 0.00 | 0.0 | 0.00 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2005 | 2536 | 4.944249 | GCGGAAAGCCACTGTTTC | 57.056 | 55.556 | 0.00 | 0.00 | 40.81 | 2.78 | R |
2849 | 3391 | 2.223852 | GGGTGCGGTGTTGTAATTTTGT | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 | R |
3381 | 3923 | 3.539604 | AGCAGCTACAATTCACCATCTC | 58.460 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 | R |
5208 | 6006 | 0.109723 | TGCCTACGCCCTTTCTGTTT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 | R |
5209 | 6007 | 0.328258 | ATGCCTACGCCCTTTCTGTT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 | R |
5762 | 6570 | 0.613260 | ACGCTTATCCTGCTGGACAA | 59.387 | 50.000 | 15.36 | 8.96 | 46.51 | 3.18 | R |
7274 | 8096 | 0.492276 | AGGTGTCCTTCTGGGGTACT | 59.508 | 55.000 | 0.00 | 0.00 | 35.33 | 2.73 | R |
7598 | 8425 | 1.145571 | TTGGTGCTACCCCAACTCTT | 58.854 | 50.000 | 3.33 | 0.00 | 37.50 | 2.85 | R |
8984 | 9920 | 0.610509 | AGAGCTCAAGGAGACTCGCA | 60.611 | 55.000 | 17.77 | 0.00 | 42.68 | 5.10 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 57 | 4.156373 | TGATACTACGTCCGTTGTTCATCA | 59.844 | 41.667 | 11.73 | 12.18 | 35.82 | 3.07 |
57 | 58 | 2.942710 | ACTACGTCCGTTGTTCATCAG | 58.057 | 47.619 | 0.00 | 0.00 | 30.56 | 2.90 |
58 | 59 | 1.654105 | CTACGTCCGTTGTTCATCAGC | 59.346 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
77 | 78 | 2.170607 | AGCCGTACAGATTTACCAGCAT | 59.829 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
247 | 349 | 3.065925 | CAGCAGACATATCACTCGACTGA | 59.934 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
248 | 350 | 3.066064 | AGCAGACATATCACTCGACTGAC | 59.934 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
249 | 351 | 3.793801 | GCAGACATATCACTCGACTGACC | 60.794 | 52.174 | 0.00 | 0.00 | 0.00 | 4.02 |
250 | 352 | 2.614520 | AGACATATCACTCGACTGACCG | 59.385 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
251 | 353 | 1.676529 | ACATATCACTCGACTGACCGG | 59.323 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
252 | 354 | 1.947456 | CATATCACTCGACTGACCGGA | 59.053 | 52.381 | 9.46 | 0.00 | 0.00 | 5.14 |
253 | 355 | 1.664873 | TATCACTCGACTGACCGGAG | 58.335 | 55.000 | 9.46 | 0.00 | 0.00 | 4.63 |
418 | 533 | 5.943416 | TCTTAACATGACACTGGGGTTTATG | 59.057 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
464 | 579 | 7.547019 | TCAGCACTCAACTGATTTTACTGATAG | 59.453 | 37.037 | 0.00 | 0.00 | 39.21 | 2.08 |
465 | 580 | 7.547019 | CAGCACTCAACTGATTTTACTGATAGA | 59.453 | 37.037 | 0.00 | 0.00 | 37.32 | 1.98 |
466 | 581 | 7.547370 | AGCACTCAACTGATTTTACTGATAGAC | 59.453 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
467 | 582 | 7.331934 | GCACTCAACTGATTTTACTGATAGACA | 59.668 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
468 | 583 | 9.376075 | CACTCAACTGATTTTACTGATAGACAT | 57.624 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
510 | 626 | 0.679002 | AGTGGACATGCACATGAGCC | 60.679 | 55.000 | 17.19 | 16.19 | 41.20 | 4.70 |
514 | 630 | 2.277737 | CATGCACATGAGCCCCCT | 59.722 | 61.111 | 12.78 | 0.00 | 41.20 | 4.79 |
551 | 667 | 8.692110 | TGCAATGCTTCTTTCTGTTTTATATG | 57.308 | 30.769 | 6.82 | 0.00 | 0.00 | 1.78 |
670 | 883 | 0.673333 | TGCAGTAAGTCACATGGGCG | 60.673 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
886 | 1417 | 2.837591 | TGTTCTGCTAATGCCTGTCCTA | 59.162 | 45.455 | 0.00 | 0.00 | 38.71 | 2.94 |
957 | 1488 | 2.517127 | AGGGATTGCTGAGGATTCCATT | 59.483 | 45.455 | 15.23 | 2.22 | 0.00 | 3.16 |
1008 | 1539 | 3.009253 | AGGATTCTGAGATCATGGATGCC | 59.991 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
1011 | 1542 | 3.487120 | TCTGAGATCATGGATGCCAAG | 57.513 | 47.619 | 0.00 | 0.00 | 36.95 | 3.61 |
1014 | 1545 | 2.714793 | TGAGATCATGGATGCCAAGGAT | 59.285 | 45.455 | 0.00 | 0.00 | 36.95 | 3.24 |
1035 | 1566 | 6.174049 | GGATCAACCTCAAGCTAAAGTTACT | 58.826 | 40.000 | 0.00 | 0.00 | 35.41 | 2.24 |
1038 | 1569 | 3.586892 | ACCTCAAGCTAAAGTTACTCGC | 58.413 | 45.455 | 0.00 | 0.00 | 0.00 | 5.03 |
1059 | 1590 | 0.238289 | GCATCGTGTTTGTGACTGGG | 59.762 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1143 | 1674 | 4.357947 | GCTGCTCGTGGTCACCGA | 62.358 | 66.667 | 0.00 | 0.00 | 0.00 | 4.69 |
1170 | 1701 | 7.282224 | GTGATGGTTGTAATGCCAAGATACTTA | 59.718 | 37.037 | 0.00 | 0.00 | 38.38 | 2.24 |
1326 | 1857 | 8.375506 | ACACAATCACCTTCTTATTCTCTGTTA | 58.624 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
1389 | 1920 | 3.004106 | GCCCTGCAAAGACATATGTGATC | 59.996 | 47.826 | 14.43 | 0.00 | 0.00 | 2.92 |
1449 | 1980 | 7.693951 | GCGCATGAAGGTCAAAATATGATATAC | 59.306 | 37.037 | 0.30 | 0.00 | 40.97 | 1.47 |
1689 | 2220 | 5.807909 | ACCAATTTTATTCTGCCAATTGCT | 58.192 | 33.333 | 0.00 | 0.00 | 42.00 | 3.91 |
2005 | 2536 | 1.548269 | AGAAGCTCTCAGGAACTTCGG | 59.452 | 52.381 | 0.00 | 0.00 | 44.68 | 4.30 |
2022 | 2553 | 1.285950 | GGAAACAGTGGCTTTCCGC | 59.714 | 57.895 | 8.94 | 0.00 | 37.89 | 5.54 |
2053 | 2584 | 6.236017 | TCGTCTGTTGATATTTTTGTCCAC | 57.764 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
2235 | 2769 | 4.160736 | TGTCGATCATCCGTCATATCAC | 57.839 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
2325 | 2862 | 6.246919 | ACTAAGCTCCTAGTTGACTAAGTCA | 58.753 | 40.000 | 0.00 | 0.00 | 41.09 | 3.41 |
2746 | 3288 | 3.406764 | AGTTCAGAGATTGCACTTCACC | 58.593 | 45.455 | 0.00 | 0.00 | 28.23 | 4.02 |
3109 | 3651 | 2.595463 | GTGGTCTGCTGCTGCCAA | 60.595 | 61.111 | 18.59 | 0.00 | 38.71 | 4.52 |
3335 | 3877 | 7.534085 | TCATTTGTTCCATTATACGAGTCAC | 57.466 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3360 | 3902 | 2.064434 | TGGTTCAGCATGTTTGGACA | 57.936 | 45.000 | 11.38 | 0.00 | 40.71 | 4.02 |
3381 | 3923 | 4.057432 | CACTACTTGTTTGGGGCAATTTG | 58.943 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
3416 | 3958 | 0.737219 | GCTGCTTGATGTTGGCTAGG | 59.263 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3420 | 3962 | 1.340017 | GCTTGATGTTGGCTAGGTGGA | 60.340 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
3536 | 4079 | 8.893219 | TGCATGTTAAATTGGTTTTCATTACA | 57.107 | 26.923 | 0.00 | 0.00 | 0.00 | 2.41 |
3669 | 4212 | 2.084546 | GCACATCAGGTTTGGGTCTAC | 58.915 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
3782 | 4333 | 1.830486 | ATCCTGATCTGGGATTGCCT | 58.170 | 50.000 | 17.73 | 0.00 | 40.31 | 4.75 |
3896 | 4447 | 1.073964 | CAGTTGTGACAGCAGATCGG | 58.926 | 55.000 | 1.54 | 0.00 | 0.00 | 4.18 |
3982 | 4534 | 1.879380 | TCAATTGCCCTGTCTTTCACG | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
4167 | 4719 | 3.959495 | ATAGATGGATGGGTTGCAAGT | 57.041 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
4361 | 5083 | 6.535150 | ACTTTCTTTTTCTTTGCTAGTTTGCC | 59.465 | 34.615 | 0.00 | 0.00 | 0.00 | 4.52 |
4643 | 5366 | 1.191489 | TCATGAGGGAGGACGTGCAA | 61.191 | 55.000 | 10.52 | 0.00 | 0.00 | 4.08 |
4732 | 5523 | 5.407995 | TGCAAGTTTTGAAACAAAGTTGGAG | 59.592 | 36.000 | 13.12 | 3.37 | 41.30 | 3.86 |
4782 | 5573 | 1.539929 | GCAGTGCCACTATAGCTGGAG | 60.540 | 57.143 | 19.53 | 0.00 | 0.00 | 3.86 |
4931 | 5729 | 7.065120 | TCCATTCCAACATTTCTTGTTTCAT | 57.935 | 32.000 | 0.00 | 0.00 | 46.51 | 2.57 |
4954 | 5752 | 6.114187 | TCATTGGCTGAAGACTAAGAGAAA | 57.886 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
4981 | 5779 | 3.165071 | CCCAGGGTGATTTTAGCAGTTT | 58.835 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
4982 | 5780 | 3.056607 | CCCAGGGTGATTTTAGCAGTTTG | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 2.93 |
4983 | 5781 | 3.573967 | CCAGGGTGATTTTAGCAGTTTGT | 59.426 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
4984 | 5782 | 4.764823 | CCAGGGTGATTTTAGCAGTTTGTA | 59.235 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
4985 | 5783 | 5.106157 | CCAGGGTGATTTTAGCAGTTTGTAG | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4986 | 5784 | 4.459337 | AGGGTGATTTTAGCAGTTTGTAGC | 59.541 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
4987 | 5785 | 4.380550 | GGGTGATTTTAGCAGTTTGTAGCC | 60.381 | 45.833 | 0.00 | 0.00 | 0.00 | 3.93 |
4988 | 5786 | 4.217550 | GGTGATTTTAGCAGTTTGTAGCCA | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 4.75 |
4989 | 5787 | 5.278758 | GGTGATTTTAGCAGTTTGTAGCCAA | 60.279 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
4990 | 5788 | 5.629435 | GTGATTTTAGCAGTTTGTAGCCAAC | 59.371 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
5024 | 5822 | 1.228306 | GCTAGCCGAGCCTAGGAGA | 60.228 | 63.158 | 14.75 | 0.00 | 46.41 | 3.71 |
5206 | 6004 | 2.573340 | GGGGACGGCTGCAAAATG | 59.427 | 61.111 | 0.50 | 0.00 | 0.00 | 2.32 |
5207 | 6005 | 2.125952 | GGGACGGCTGCAAAATGC | 60.126 | 61.111 | 0.50 | 0.00 | 45.29 | 3.56 |
5250 | 6048 | 6.815142 | GCATTTTGATCAACAAGAGCCTTAAT | 59.185 | 34.615 | 7.89 | 0.00 | 39.77 | 1.40 |
5307 | 6105 | 2.787473 | TTATCCTGGTCAAGCTGGTG | 57.213 | 50.000 | 5.23 | 0.00 | 0.00 | 4.17 |
5395 | 6193 | 1.151810 | AGGGAGTTCTGGGAAGGCA | 60.152 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
5577 | 6384 | 4.681942 | GCCTACGACATGATTGTAGCTAAG | 59.318 | 45.833 | 0.00 | 0.00 | 42.20 | 2.18 |
5580 | 6387 | 4.352039 | ACGACATGATTGTAGCTAAGACG | 58.648 | 43.478 | 0.00 | 0.00 | 35.79 | 4.18 |
5714 | 6521 | 2.035632 | GGTGATACCTGGAGAGAGTGG | 58.964 | 57.143 | 0.00 | 0.00 | 34.73 | 4.00 |
5756 | 6564 | 0.238553 | GTTGCTGACTTCCGCTTTCC | 59.761 | 55.000 | 0.00 | 0.00 | 0.00 | 3.13 |
5762 | 6570 | 1.275291 | TGACTTCCGCTTTCCGATTCT | 59.725 | 47.619 | 0.00 | 0.00 | 40.02 | 2.40 |
5795 | 6603 | 2.474712 | GCGTGCCAAAGTCGCTAC | 59.525 | 61.111 | 0.00 | 0.00 | 45.29 | 3.58 |
5883 | 6692 | 1.229853 | TTGGGAGGAAGGAGGGGAC | 60.230 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
5967 | 6776 | 1.305046 | GTCCAGGGGACGGAGAAGA | 60.305 | 63.158 | 0.00 | 0.00 | 43.14 | 2.87 |
6050 | 6859 | 2.787601 | TGCTTTAGACGCCTATACCG | 57.212 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
6148 | 6958 | 1.179174 | TCGGGCATATGAGGACCTCG | 61.179 | 60.000 | 16.81 | 3.46 | 32.35 | 4.63 |
6210 | 7020 | 1.727062 | AGATGGCCAAGATCCGAGAT | 58.273 | 50.000 | 10.96 | 0.00 | 0.00 | 2.75 |
6340 | 7153 | 2.239654 | TGTTCAATGGGGAGGATGAGAC | 59.760 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
6370 | 7183 | 2.256117 | AAACTGGACGACTCCTTTGG | 57.744 | 50.000 | 0.00 | 0.00 | 37.48 | 3.28 |
6393 | 7206 | 2.358898 | GAGACCAGCATGTGTTTTGTGT | 59.641 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
6496 | 7309 | 1.827399 | GAGGTGTGGAAAGGCCTCGA | 61.827 | 60.000 | 5.23 | 0.00 | 38.22 | 4.04 |
6530 | 7343 | 9.777382 | GCGATAGTATGGCTAACCAAGCTTTTG | 62.777 | 44.444 | 9.67 | 0.00 | 45.33 | 2.44 |
6746 | 7562 | 0.038166 | GTTTCATGCCTGGGAGGTCA | 59.962 | 55.000 | 0.00 | 0.00 | 37.80 | 4.02 |
6841 | 7657 | 4.389374 | GTGTTCATTGACTTGGAGAAGGA | 58.611 | 43.478 | 0.00 | 0.00 | 32.95 | 3.36 |
6972 | 7788 | 2.060326 | TCGAACAAGTGATGTCGACC | 57.940 | 50.000 | 14.12 | 0.00 | 42.99 | 4.79 |
7022 | 7838 | 1.004044 | CATCAGGGGTCAGCTTTGAGT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
7178 | 7995 | 3.874383 | TGGAGACAAACCTTGGAATCA | 57.126 | 42.857 | 0.00 | 0.00 | 37.44 | 2.57 |
7229 | 8048 | 2.415168 | CGAGTACATGATGTGCGGTTTT | 59.585 | 45.455 | 8.61 | 0.00 | 38.05 | 2.43 |
7240 | 8059 | 7.104043 | TGATGTGCGGTTTTAGTACTACTAT | 57.896 | 36.000 | 0.91 | 0.00 | 29.64 | 2.12 |
7363 | 8185 | 5.551760 | GATGTGAACCATCGAATCAAAGT | 57.448 | 39.130 | 0.00 | 0.00 | 40.60 | 2.66 |
7368 | 8190 | 2.618053 | ACCATCGAATCAAAGTCGGAC | 58.382 | 47.619 | 0.00 | 0.00 | 39.01 | 4.79 |
7414 | 8236 | 3.190118 | GGCATTCTTTGTGACAAGAGAGG | 59.810 | 47.826 | 0.00 | 3.43 | 0.00 | 3.69 |
7444 | 8266 | 6.901081 | AAAGCTAAAAGGCAAGTTCTACAT | 57.099 | 33.333 | 0.00 | 0.00 | 34.17 | 2.29 |
7449 | 8271 | 3.678056 | AAGGCAAGTTCTACATGACGA | 57.322 | 42.857 | 0.00 | 0.00 | 28.58 | 4.20 |
7477 | 8299 | 1.083489 | CCCGCAATGTTGTATGACGT | 58.917 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
7500 | 8326 | 1.142262 | AGTGTTGGCCGACTAAAAGGT | 59.858 | 47.619 | 23.87 | 0.00 | 0.00 | 3.50 |
7592 | 8419 | 6.015856 | GGATCGAGTCCGGAATGATGATATAT | 60.016 | 42.308 | 10.26 | 0.00 | 37.23 | 0.86 |
7598 | 8425 | 9.072375 | GAGTCCGGAATGATGATATATGAGATA | 57.928 | 37.037 | 10.26 | 0.00 | 0.00 | 1.98 |
7825 | 8652 | 1.008449 | ACTAGCTATGGACAGGGGTGT | 59.992 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
7861 | 8688 | 1.453379 | ATGTGCCAGAGCCATGAGC | 60.453 | 57.895 | 0.00 | 0.00 | 44.25 | 4.26 |
7984 | 8814 | 7.148239 | CCAGTTGATCAGTGGTATCTTTTTACC | 60.148 | 40.741 | 15.16 | 0.00 | 40.84 | 2.85 |
8228 | 9065 | 6.105657 | TGCGATATATTGTTAATGCCATCG | 57.894 | 37.500 | 1.88 | 0.00 | 37.63 | 3.84 |
8447 | 9284 | 0.033699 | GAGGAGGGTACAGGGTACGT | 60.034 | 60.000 | 0.00 | 0.00 | 0.00 | 3.57 |
8457 | 9294 | 1.544691 | ACAGGGTACGTACTGCTCAAG | 59.455 | 52.381 | 24.07 | 10.46 | 38.25 | 3.02 |
8461 | 9298 | 2.991866 | GGGTACGTACTGCTCAAGTTTC | 59.008 | 50.000 | 24.07 | 3.91 | 40.56 | 2.78 |
8521 | 9360 | 3.163630 | ACATTGCGCCATAAATCAACC | 57.836 | 42.857 | 4.18 | 0.00 | 0.00 | 3.77 |
8633 | 9472 | 4.737578 | AGCTCTTGTCCGGTTATAGGATA | 58.262 | 43.478 | 0.00 | 0.00 | 40.30 | 2.59 |
8748 | 9684 | 4.217767 | AGTGTCTGCGATCTGTGTAACTAA | 59.782 | 41.667 | 0.00 | 0.00 | 38.04 | 2.24 |
8750 | 9686 | 4.217767 | TGTCTGCGATCTGTGTAACTAACT | 59.782 | 41.667 | 0.00 | 0.00 | 38.04 | 2.24 |
8751 | 9687 | 5.413523 | TGTCTGCGATCTGTGTAACTAACTA | 59.586 | 40.000 | 0.00 | 0.00 | 38.04 | 2.24 |
8752 | 9688 | 5.966503 | GTCTGCGATCTGTGTAACTAACTAG | 59.033 | 44.000 | 0.00 | 0.00 | 38.04 | 2.57 |
8753 | 9689 | 5.878669 | TCTGCGATCTGTGTAACTAACTAGA | 59.121 | 40.000 | 0.00 | 0.00 | 38.04 | 2.43 |
8928 | 9864 | 2.852901 | GCAGTACGAGCAGATCTTCGAG | 60.853 | 54.545 | 20.72 | 6.26 | 0.00 | 4.04 |
9012 | 9948 | 3.446873 | TCTCCTTGAGCTCTGAAGACATC | 59.553 | 47.826 | 16.19 | 0.00 | 0.00 | 3.06 |
9013 | 9949 | 2.499289 | TCCTTGAGCTCTGAAGACATCC | 59.501 | 50.000 | 16.19 | 0.00 | 0.00 | 3.51 |
9016 | 9952 | 3.098774 | TGAGCTCTGAAGACATCCTCT | 57.901 | 47.619 | 16.19 | 0.00 | 0.00 | 3.69 |
9097 | 10038 | 2.260434 | CAATGCGCCTGCTTGCTT | 59.740 | 55.556 | 4.18 | 0.00 | 43.34 | 3.91 |
9116 | 10057 | 2.048877 | GGTTCGCCGGTTCGAGAA | 60.049 | 61.111 | 1.90 | 0.00 | 39.82 | 2.87 |
9117 | 10058 | 2.378084 | GGTTCGCCGGTTCGAGAAC | 61.378 | 63.158 | 1.90 | 11.21 | 40.49 | 3.01 |
9119 | 10060 | 1.012486 | GTTCGCCGGTTCGAGAACAT | 61.012 | 55.000 | 16.56 | 0.00 | 42.85 | 2.71 |
9161 | 10102 | 1.668151 | GTGACAGCTTCGGGTGGAC | 60.668 | 63.158 | 0.00 | 0.00 | 46.55 | 4.02 |
9530 | 10492 | 4.440839 | AAAAGCTTAAAGATTCAGGCGG | 57.559 | 40.909 | 0.00 | 0.00 | 0.00 | 6.13 |
9537 | 10499 | 2.717639 | AAGATTCAGGCGGCATAACT | 57.282 | 45.000 | 13.08 | 0.56 | 0.00 | 2.24 |
9569 | 10531 | 1.318576 | CAAACGAAGGGACAAAGCCT | 58.681 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
9578 | 10540 | 2.441750 | AGGGACAAAGCCTGACAGTAAA | 59.558 | 45.455 | 0.93 | 0.00 | 0.00 | 2.01 |
9579 | 10541 | 2.552743 | GGGACAAAGCCTGACAGTAAAC | 59.447 | 50.000 | 0.93 | 0.00 | 0.00 | 2.01 |
9580 | 10542 | 3.211045 | GGACAAAGCCTGACAGTAAACA | 58.789 | 45.455 | 0.93 | 0.00 | 0.00 | 2.83 |
9581 | 10543 | 3.821033 | GGACAAAGCCTGACAGTAAACAT | 59.179 | 43.478 | 0.93 | 0.00 | 0.00 | 2.71 |
9582 | 10544 | 5.001232 | GGACAAAGCCTGACAGTAAACATA | 58.999 | 41.667 | 0.93 | 0.00 | 0.00 | 2.29 |
9583 | 10545 | 5.472137 | GGACAAAGCCTGACAGTAAACATAA | 59.528 | 40.000 | 0.93 | 0.00 | 0.00 | 1.90 |
9584 | 10546 | 6.348540 | GGACAAAGCCTGACAGTAAACATAAG | 60.349 | 42.308 | 0.93 | 0.00 | 0.00 | 1.73 |
9585 | 10547 | 6.296026 | ACAAAGCCTGACAGTAAACATAAGA | 58.704 | 36.000 | 0.93 | 0.00 | 0.00 | 2.10 |
9586 | 10548 | 6.770785 | ACAAAGCCTGACAGTAAACATAAGAA | 59.229 | 34.615 | 0.93 | 0.00 | 0.00 | 2.52 |
9587 | 10549 | 6.803154 | AAGCCTGACAGTAAACATAAGAAC | 57.197 | 37.500 | 0.93 | 0.00 | 0.00 | 3.01 |
9588 | 10550 | 5.246307 | AGCCTGACAGTAAACATAAGAACC | 58.754 | 41.667 | 0.93 | 0.00 | 0.00 | 3.62 |
9589 | 10551 | 5.001232 | GCCTGACAGTAAACATAAGAACCA | 58.999 | 41.667 | 0.93 | 0.00 | 0.00 | 3.67 |
9590 | 10552 | 5.122396 | GCCTGACAGTAAACATAAGAACCAG | 59.878 | 44.000 | 0.93 | 0.00 | 0.00 | 4.00 |
9591 | 10553 | 6.464222 | CCTGACAGTAAACATAAGAACCAGA | 58.536 | 40.000 | 0.93 | 0.00 | 0.00 | 3.86 |
9592 | 10554 | 7.106239 | CCTGACAGTAAACATAAGAACCAGAT | 58.894 | 38.462 | 0.93 | 0.00 | 0.00 | 2.90 |
9593 | 10555 | 7.278868 | CCTGACAGTAAACATAAGAACCAGATC | 59.721 | 40.741 | 0.93 | 0.00 | 0.00 | 2.75 |
9594 | 10556 | 7.103641 | TGACAGTAAACATAAGAACCAGATCC | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
9595 | 10557 | 7.038302 | TGACAGTAAACATAAGAACCAGATCCT | 60.038 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
9596 | 10558 | 8.375493 | ACAGTAAACATAAGAACCAGATCCTA | 57.625 | 34.615 | 0.00 | 0.00 | 0.00 | 2.94 |
9597 | 10559 | 8.822805 | ACAGTAAACATAAGAACCAGATCCTAA | 58.177 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
9598 | 10560 | 9.667107 | CAGTAAACATAAGAACCAGATCCTAAA | 57.333 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
9604 | 10566 | 8.793592 | ACATAAGAACCAGATCCTAAAACAAAC | 58.206 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
9626 | 10588 | 1.335810 | CAGCAGACACACAAAGCACAT | 59.664 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
9641 | 10603 | 0.390866 | CACATGTCGCTGAAGAGGCT | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
9644 | 10606 | 1.135915 | CATGTCGCTGAAGAGGCTAGT | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
9645 | 10607 | 0.528017 | TGTCGCTGAAGAGGCTAGTG | 59.472 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
9646 | 10608 | 0.804156 | GTCGCTGAAGAGGCTAGTGC | 60.804 | 60.000 | 0.00 | 0.00 | 38.76 | 4.40 |
9649 | 10611 | 0.742635 | GCTGAAGAGGCTAGTGCACC | 60.743 | 60.000 | 14.63 | 0.00 | 41.91 | 5.01 |
9650 | 10612 | 0.107945 | CTGAAGAGGCTAGTGCACCC | 60.108 | 60.000 | 14.63 | 7.97 | 41.91 | 4.61 |
9651 | 10613 | 1.222113 | GAAGAGGCTAGTGCACCCC | 59.778 | 63.158 | 14.63 | 11.90 | 41.91 | 4.95 |
9691 | 10721 | 4.394712 | CTGGTCTCCACCCGCCAC | 62.395 | 72.222 | 0.00 | 0.00 | 42.99 | 5.01 |
9692 | 10722 | 4.954118 | TGGTCTCCACCCGCCACT | 62.954 | 66.667 | 0.00 | 0.00 | 42.99 | 4.00 |
9693 | 10723 | 4.394712 | GGTCTCCACCCGCCACTG | 62.395 | 72.222 | 0.00 | 0.00 | 36.54 | 3.66 |
9694 | 10724 | 3.626924 | GTCTCCACCCGCCACTGT | 61.627 | 66.667 | 0.00 | 0.00 | 0.00 | 3.55 |
9695 | 10725 | 2.847234 | TCTCCACCCGCCACTGTT | 60.847 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
9696 | 10726 | 2.113139 | CTCCACCCGCCACTGTTT | 59.887 | 61.111 | 0.00 | 0.00 | 0.00 | 2.83 |
9697 | 10727 | 1.528309 | CTCCACCCGCCACTGTTTT | 60.528 | 57.895 | 0.00 | 0.00 | 0.00 | 2.43 |
9698 | 10728 | 1.076632 | TCCACCCGCCACTGTTTTT | 60.077 | 52.632 | 0.00 | 0.00 | 0.00 | 1.94 |
9699 | 10729 | 1.104577 | TCCACCCGCCACTGTTTTTC | 61.105 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
9700 | 10730 | 1.362355 | CACCCGCCACTGTTTTTCC | 59.638 | 57.895 | 0.00 | 0.00 | 0.00 | 3.13 |
9701 | 10731 | 1.106944 | CACCCGCCACTGTTTTTCCT | 61.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
9702 | 10732 | 0.396556 | ACCCGCCACTGTTTTTCCTT | 60.397 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
9703 | 10733 | 0.313987 | CCCGCCACTGTTTTTCCTTC | 59.686 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
9704 | 10734 | 1.028905 | CCGCCACTGTTTTTCCTTCA | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
9705 | 10735 | 1.001378 | CCGCCACTGTTTTTCCTTCAG | 60.001 | 52.381 | 0.00 | 0.00 | 35.60 | 3.02 |
9706 | 10736 | 1.676006 | CGCCACTGTTTTTCCTTCAGT | 59.324 | 47.619 | 0.00 | 0.00 | 42.14 | 3.41 |
9707 | 10737 | 2.099098 | CGCCACTGTTTTTCCTTCAGTT | 59.901 | 45.455 | 0.00 | 0.00 | 39.89 | 3.16 |
9708 | 10738 | 3.314080 | CGCCACTGTTTTTCCTTCAGTTA | 59.686 | 43.478 | 0.00 | 0.00 | 39.89 | 2.24 |
9709 | 10739 | 4.023193 | CGCCACTGTTTTTCCTTCAGTTAT | 60.023 | 41.667 | 0.00 | 0.00 | 39.89 | 1.89 |
9710 | 10740 | 5.461526 | GCCACTGTTTTTCCTTCAGTTATC | 58.538 | 41.667 | 0.00 | 0.00 | 39.89 | 1.75 |
9711 | 10741 | 5.241728 | GCCACTGTTTTTCCTTCAGTTATCT | 59.758 | 40.000 | 0.00 | 0.00 | 39.89 | 1.98 |
9712 | 10742 | 6.430000 | GCCACTGTTTTTCCTTCAGTTATCTA | 59.570 | 38.462 | 0.00 | 0.00 | 39.89 | 1.98 |
9713 | 10743 | 7.361286 | GCCACTGTTTTTCCTTCAGTTATCTAG | 60.361 | 40.741 | 0.00 | 0.00 | 39.89 | 2.43 |
9714 | 10744 | 7.661847 | CCACTGTTTTTCCTTCAGTTATCTAGT | 59.338 | 37.037 | 0.00 | 0.00 | 39.89 | 2.57 |
9715 | 10745 | 8.713271 | CACTGTTTTTCCTTCAGTTATCTAGTC | 58.287 | 37.037 | 0.00 | 0.00 | 39.89 | 2.59 |
9716 | 10746 | 8.652290 | ACTGTTTTTCCTTCAGTTATCTAGTCT | 58.348 | 33.333 | 0.00 | 0.00 | 39.00 | 3.24 |
9717 | 10747 | 9.145865 | CTGTTTTTCCTTCAGTTATCTAGTCTC | 57.854 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
9718 | 10748 | 8.871125 | TGTTTTTCCTTCAGTTATCTAGTCTCT | 58.129 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
9719 | 10749 | 9.145865 | GTTTTTCCTTCAGTTATCTAGTCTCTG | 57.854 | 37.037 | 0.00 | 0.00 | 0.00 | 3.35 |
9720 | 10750 | 8.423906 | TTTTCCTTCAGTTATCTAGTCTCTGT | 57.576 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
9721 | 10751 | 9.529823 | TTTTCCTTCAGTTATCTAGTCTCTGTA | 57.470 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
9722 | 10752 | 8.508883 | TTCCTTCAGTTATCTAGTCTCTGTAC | 57.491 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
9723 | 10753 | 7.055378 | TCCTTCAGTTATCTAGTCTCTGTACC | 58.945 | 42.308 | 0.00 | 0.00 | 0.00 | 3.34 |
9724 | 10754 | 6.263617 | CCTTCAGTTATCTAGTCTCTGTACCC | 59.736 | 46.154 | 0.00 | 0.00 | 0.00 | 3.69 |
9725 | 10755 | 5.692928 | TCAGTTATCTAGTCTCTGTACCCC | 58.307 | 45.833 | 0.00 | 0.00 | 0.00 | 4.95 |
9726 | 10756 | 5.432390 | TCAGTTATCTAGTCTCTGTACCCCT | 59.568 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
9727 | 10757 | 5.533154 | CAGTTATCTAGTCTCTGTACCCCTG | 59.467 | 48.000 | 0.00 | 0.00 | 0.00 | 4.45 |
9728 | 10758 | 3.603965 | ATCTAGTCTCTGTACCCCTGG | 57.396 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
9729 | 10759 | 2.285707 | TCTAGTCTCTGTACCCCTGGT | 58.714 | 52.381 | 0.00 | 0.00 | 40.16 | 4.00 |
9730 | 10760 | 2.241685 | TCTAGTCTCTGTACCCCTGGTC | 59.758 | 54.545 | 0.00 | 0.00 | 37.09 | 4.02 |
9731 | 10761 | 1.085715 | AGTCTCTGTACCCCTGGTCT | 58.914 | 55.000 | 0.00 | 0.00 | 37.09 | 3.85 |
9732 | 10762 | 1.006162 | AGTCTCTGTACCCCTGGTCTC | 59.994 | 57.143 | 0.00 | 0.00 | 37.09 | 3.36 |
9733 | 10763 | 0.335361 | TCTCTGTACCCCTGGTCTCC | 59.665 | 60.000 | 0.00 | 0.00 | 37.09 | 3.71 |
9734 | 10764 | 0.041238 | CTCTGTACCCCTGGTCTCCA | 59.959 | 60.000 | 0.00 | 0.00 | 37.09 | 3.86 |
9735 | 10765 | 0.252103 | TCTGTACCCCTGGTCTCCAC | 60.252 | 60.000 | 0.00 | 0.00 | 37.09 | 4.02 |
9736 | 10766 | 0.544357 | CTGTACCCCTGGTCTCCACA | 60.544 | 60.000 | 0.00 | 0.00 | 37.09 | 4.17 |
9741 | 10771 | 1.843376 | CCCTGGTCTCCACACCTGT | 60.843 | 63.158 | 0.00 | 0.00 | 37.34 | 4.00 |
9759 | 10789 | 4.037565 | ACCTGTGACGCTCGATATATTTCA | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
9769 | 10799 | 5.348997 | GCTCGATATATTTCACTTGCTACCC | 59.651 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
9773 | 10803 | 1.739067 | ATTTCACTTGCTACCCGCTC | 58.261 | 50.000 | 0.00 | 0.00 | 40.11 | 5.03 |
9779 | 10809 | 1.202382 | ACTTGCTACCCGCTCGATTAC | 60.202 | 52.381 | 0.00 | 0.00 | 40.11 | 1.89 |
9802 | 10832 | 1.302949 | GCCCCCAACATCAGTAGCA | 59.697 | 57.895 | 0.00 | 0.00 | 0.00 | 3.49 |
9803 | 10833 | 0.106519 | GCCCCCAACATCAGTAGCAT | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
9806 | 10836 | 2.428171 | CCCCCAACATCAGTAGCATTTG | 59.572 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
9822 | 10852 | 5.077134 | GCATTTGCTCTGGGTTTTTATCT | 57.923 | 39.130 | 0.00 | 0.00 | 38.21 | 1.98 |
9823 | 10853 | 5.482006 | GCATTTGCTCTGGGTTTTTATCTT | 58.518 | 37.500 | 0.00 | 0.00 | 38.21 | 2.40 |
9824 | 10854 | 5.934043 | GCATTTGCTCTGGGTTTTTATCTTT | 59.066 | 36.000 | 0.00 | 0.00 | 38.21 | 2.52 |
9825 | 10855 | 6.091305 | GCATTTGCTCTGGGTTTTTATCTTTC | 59.909 | 38.462 | 0.00 | 0.00 | 38.21 | 2.62 |
9826 | 10856 | 6.723298 | TTTGCTCTGGGTTTTTATCTTTCA | 57.277 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
9827 | 10857 | 5.705609 | TGCTCTGGGTTTTTATCTTTCAC | 57.294 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
9828 | 10858 | 5.385198 | TGCTCTGGGTTTTTATCTTTCACT | 58.615 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
9829 | 10859 | 5.833131 | TGCTCTGGGTTTTTATCTTTCACTT | 59.167 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
9830 | 10860 | 6.152379 | GCTCTGGGTTTTTATCTTTCACTTG | 58.848 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
9831 | 10861 | 6.084326 | TCTGGGTTTTTATCTTTCACTTGC | 57.916 | 37.500 | 0.00 | 0.00 | 0.00 | 4.01 |
9832 | 10862 | 5.833131 | TCTGGGTTTTTATCTTTCACTTGCT | 59.167 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
9833 | 10863 | 7.001674 | TCTGGGTTTTTATCTTTCACTTGCTA | 58.998 | 34.615 | 0.00 | 0.00 | 0.00 | 3.49 |
9834 | 10864 | 6.977213 | TGGGTTTTTATCTTTCACTTGCTAC | 58.023 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
9835 | 10865 | 6.015772 | TGGGTTTTTATCTTTCACTTGCTACC | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
9836 | 10866 | 6.387465 | GGTTTTTATCTTTCACTTGCTACCC | 58.613 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
9837 | 10867 | 5.873179 | TTTTATCTTTCACTTGCTACCCG | 57.127 | 39.130 | 0.00 | 0.00 | 0.00 | 5.28 |
9838 | 10868 | 1.739067 | ATCTTTCACTTGCTACCCGC | 58.261 | 50.000 | 0.00 | 0.00 | 39.77 | 6.13 |
9839 | 10869 | 0.685097 | TCTTTCACTTGCTACCCGCT | 59.315 | 50.000 | 0.00 | 0.00 | 40.11 | 5.52 |
9840 | 10870 | 1.079503 | CTTTCACTTGCTACCCGCTC | 58.920 | 55.000 | 0.00 | 0.00 | 40.11 | 5.03 |
9841 | 10871 | 0.669318 | TTTCACTTGCTACCCGCTCG | 60.669 | 55.000 | 0.00 | 0.00 | 40.11 | 5.03 |
9842 | 10872 | 1.529152 | TTCACTTGCTACCCGCTCGA | 61.529 | 55.000 | 0.00 | 0.00 | 40.11 | 4.04 |
9843 | 10873 | 1.141881 | CACTTGCTACCCGCTCGAT | 59.858 | 57.895 | 0.00 | 0.00 | 40.11 | 3.59 |
9844 | 10874 | 0.460284 | CACTTGCTACCCGCTCGATT | 60.460 | 55.000 | 0.00 | 0.00 | 40.11 | 3.34 |
9845 | 10875 | 1.108776 | ACTTGCTACCCGCTCGATTA | 58.891 | 50.000 | 0.00 | 0.00 | 40.11 | 1.75 |
9846 | 10876 | 1.202382 | ACTTGCTACCCGCTCGATTAC | 60.202 | 52.381 | 0.00 | 0.00 | 40.11 | 1.89 |
9847 | 10877 | 1.067212 | CTTGCTACCCGCTCGATTACT | 59.933 | 52.381 | 0.00 | 0.00 | 40.11 | 2.24 |
9848 | 10878 | 0.666913 | TGCTACCCGCTCGATTACTC | 59.333 | 55.000 | 0.00 | 0.00 | 40.11 | 2.59 |
9849 | 10879 | 0.953003 | GCTACCCGCTCGATTACTCT | 59.047 | 55.000 | 0.00 | 0.00 | 35.14 | 3.24 |
9850 | 10880 | 1.337387 | GCTACCCGCTCGATTACTCTT | 59.663 | 52.381 | 0.00 | 0.00 | 35.14 | 2.85 |
9851 | 10881 | 2.859032 | GCTACCCGCTCGATTACTCTTG | 60.859 | 54.545 | 0.00 | 0.00 | 35.14 | 3.02 |
9852 | 10882 | 0.179108 | ACCCGCTCGATTACTCTTGC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
9853 | 10883 | 0.876342 | CCCGCTCGATTACTCTTGCC | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 4.52 |
9854 | 10884 | 0.876342 | CCGCTCGATTACTCTTGCCC | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
9855 | 10885 | 0.876342 | CGCTCGATTACTCTTGCCCC | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
9856 | 10886 | 0.533085 | GCTCGATTACTCTTGCCCCC | 60.533 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
9857 | 10887 | 0.830648 | CTCGATTACTCTTGCCCCCA | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
9858 | 10888 | 1.209504 | CTCGATTACTCTTGCCCCCAA | 59.790 | 52.381 | 0.00 | 0.00 | 0.00 | 4.12 |
9859 | 10889 | 1.065709 | TCGATTACTCTTGCCCCCAAC | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
9860 | 10890 | 1.339631 | CGATTACTCTTGCCCCCAACA | 60.340 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
9861 | 10891 | 2.683742 | CGATTACTCTTGCCCCCAACAT | 60.684 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
9862 | 10892 | 3.433031 | CGATTACTCTTGCCCCCAACATA | 60.433 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
9863 | 10893 | 4.532834 | GATTACTCTTGCCCCCAACATAA | 58.467 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
9864 | 10894 | 2.514458 | ACTCTTGCCCCCAACATAAG | 57.486 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
9865 | 10895 | 1.710809 | ACTCTTGCCCCCAACATAAGT | 59.289 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
9866 | 10896 | 2.916934 | ACTCTTGCCCCCAACATAAGTA | 59.083 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
9867 | 10897 | 3.054361 | ACTCTTGCCCCCAACATAAGTAG | 60.054 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
9868 | 10898 | 2.024414 | CTTGCCCCCAACATAAGTAGC | 58.976 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
9869 | 10899 | 0.995803 | TGCCCCCAACATAAGTAGCA | 59.004 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
9870 | 10900 | 1.568597 | TGCCCCCAACATAAGTAGCAT | 59.431 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
9871 | 10901 | 2.024464 | TGCCCCCAACATAAGTAGCATT | 60.024 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
9872 | 10902 | 3.031013 | GCCCCCAACATAAGTAGCATTT | 58.969 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
9873 | 10903 | 3.181476 | GCCCCCAACATAAGTAGCATTTG | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
9874 | 10904 | 3.181476 | CCCCCAACATAAGTAGCATTTGC | 60.181 | 47.826 | 0.00 | 0.00 | 42.49 | 3.68 |
9889 | 10919 | 5.077134 | GCATTTGCTCTGGGTTTTTATCT | 57.923 | 39.130 | 0.00 | 0.00 | 38.21 | 1.98 |
9899 | 10929 | 7.362920 | GCTCTGGGTTTTTATCTGCAAAATAGA | 60.363 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
9933 | 10963 | 8.475639 | ACGATCCAATTACACATTAGTCTTACT | 58.524 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
39 | 40 | 1.670674 | GGCTGATGAACAACGGACGTA | 60.671 | 52.381 | 0.00 | 0.00 | 0.00 | 3.57 |
40 | 41 | 0.949105 | GGCTGATGAACAACGGACGT | 60.949 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
41 | 42 | 1.787847 | GGCTGATGAACAACGGACG | 59.212 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
42 | 43 | 0.949105 | ACGGCTGATGAACAACGGAC | 60.949 | 55.000 | 0.00 | 0.00 | 34.69 | 4.79 |
43 | 44 | 0.604073 | TACGGCTGATGAACAACGGA | 59.396 | 50.000 | 0.00 | 0.00 | 34.69 | 4.69 |
44 | 45 | 0.719465 | GTACGGCTGATGAACAACGG | 59.281 | 55.000 | 0.00 | 0.00 | 34.69 | 4.44 |
56 | 57 | 1.553248 | TGCTGGTAAATCTGTACGGCT | 59.447 | 47.619 | 0.00 | 0.00 | 0.00 | 5.52 |
57 | 58 | 2.018542 | TGCTGGTAAATCTGTACGGC | 57.981 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
58 | 59 | 4.945246 | AGTATGCTGGTAAATCTGTACGG | 58.055 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
205 | 307 | 2.515991 | ACCCAACCACGTGCACAG | 60.516 | 61.111 | 18.64 | 12.16 | 0.00 | 3.66 |
241 | 343 | 1.077930 | TACTCCCTCCGGTCAGTCG | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
247 | 349 | 2.769209 | TCTAGTAGTACTCCCTCCGGT | 58.231 | 52.381 | 5.96 | 0.00 | 0.00 | 5.28 |
248 | 350 | 3.853355 | TTCTAGTAGTACTCCCTCCGG | 57.147 | 52.381 | 5.96 | 0.00 | 0.00 | 5.14 |
249 | 351 | 5.033589 | TCTTTCTAGTAGTACTCCCTCCG | 57.966 | 47.826 | 5.96 | 0.00 | 0.00 | 4.63 |
250 | 352 | 6.543465 | GTCTTCTTTCTAGTAGTACTCCCTCC | 59.457 | 46.154 | 5.96 | 0.00 | 0.00 | 4.30 |
251 | 353 | 7.281549 | CAGTCTTCTTTCTAGTAGTACTCCCTC | 59.718 | 44.444 | 5.96 | 0.00 | 0.00 | 4.30 |
252 | 354 | 7.037442 | TCAGTCTTCTTTCTAGTAGTACTCCCT | 60.037 | 40.741 | 5.96 | 0.00 | 0.00 | 4.20 |
253 | 355 | 7.111466 | TCAGTCTTCTTTCTAGTAGTACTCCC | 58.889 | 42.308 | 5.96 | 0.00 | 0.00 | 4.30 |
254 | 356 | 8.564509 | TTCAGTCTTCTTTCTAGTAGTACTCC | 57.435 | 38.462 | 5.96 | 0.00 | 0.00 | 3.85 |
418 | 533 | 7.170658 | GTGCTGAGAATATACAATTGGAGACTC | 59.829 | 40.741 | 10.83 | 9.28 | 0.00 | 3.36 |
479 | 594 | 3.761897 | CATGTCCACTACCCCTCAAAAA | 58.238 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
480 | 595 | 2.554344 | GCATGTCCACTACCCCTCAAAA | 60.554 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
481 | 596 | 1.004277 | GCATGTCCACTACCCCTCAAA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
482 | 597 | 0.618458 | GCATGTCCACTACCCCTCAA | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
483 | 598 | 0.546507 | TGCATGTCCACTACCCCTCA | 60.547 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
484 | 599 | 0.107654 | GTGCATGTCCACTACCCCTC | 60.108 | 60.000 | 0.00 | 0.00 | 33.02 | 4.30 |
485 | 600 | 0.840288 | TGTGCATGTCCACTACCCCT | 60.840 | 55.000 | 0.00 | 0.00 | 36.68 | 4.79 |
486 | 601 | 0.255890 | ATGTGCATGTCCACTACCCC | 59.744 | 55.000 | 0.00 | 0.00 | 36.68 | 4.95 |
487 | 602 | 1.065491 | TCATGTGCATGTCCACTACCC | 60.065 | 52.381 | 11.38 | 0.00 | 39.72 | 3.69 |
488 | 603 | 2.283298 | CTCATGTGCATGTCCACTACC | 58.717 | 52.381 | 11.38 | 0.00 | 39.72 | 3.18 |
514 | 630 | 4.525487 | AGAAGCATTGCATTCCTTGAAGAA | 59.475 | 37.500 | 11.91 | 0.00 | 0.00 | 2.52 |
551 | 667 | 3.511934 | TGGAAGCTCTTCTAGTTCCTGTC | 59.488 | 47.826 | 9.23 | 0.00 | 39.45 | 3.51 |
886 | 1417 | 7.016153 | TGGTATATTTGTCAAGACCAGAGTT | 57.984 | 36.000 | 6.62 | 0.00 | 33.18 | 3.01 |
1011 | 1542 | 6.174049 | AGTAACTTTAGCTTGAGGTTGATCC | 58.826 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1014 | 1545 | 5.227908 | CGAGTAACTTTAGCTTGAGGTTGA | 58.772 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
1035 | 1566 | 0.878086 | TCACAAACACGATGCTGCGA | 60.878 | 50.000 | 5.82 | 0.00 | 34.83 | 5.10 |
1038 | 1569 | 1.069703 | CCAGTCACAAACACGATGCTG | 60.070 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
1059 | 1590 | 1.755179 | TTGCATAAGGAGCAGCTTCC | 58.245 | 50.000 | 0.00 | 0.00 | 43.75 | 3.46 |
1090 | 1621 | 2.226330 | CGAACCACAAACATCTCCCAA | 58.774 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
1143 | 1674 | 4.032960 | TCTTGGCATTACAACCATCACT | 57.967 | 40.909 | 0.00 | 0.00 | 35.42 | 3.41 |
1170 | 1701 | 7.068716 | GCATAGTTTTTATCAGAGGACCCATTT | 59.931 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
1326 | 1857 | 8.409358 | ACAAGGATAAACAGTTGCTAGAATTT | 57.591 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
1331 | 1862 | 8.015658 | GTGTAAACAAGGATAAACAGTTGCTAG | 58.984 | 37.037 | 0.00 | 0.00 | 0.00 | 3.42 |
1389 | 1920 | 8.462016 | CAAGGGAAATAACAAGAAAGTATGGAG | 58.538 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
2005 | 2536 | 4.944249 | GCGGAAAGCCACTGTTTC | 57.056 | 55.556 | 0.00 | 0.00 | 40.81 | 2.78 |
2235 | 2769 | 6.485830 | TCTCCATATAAACTTCCTGGTCTG | 57.514 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2746 | 3288 | 6.893958 | AAACATCAGATTAGCTACGAACTG | 57.106 | 37.500 | 0.00 | 1.35 | 0.00 | 3.16 |
2849 | 3391 | 2.223852 | GGGTGCGGTGTTGTAATTTTGT | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
3335 | 3877 | 4.096231 | TCCAAACATGCTGAACCATATTCG | 59.904 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
3360 | 3902 | 3.964031 | TCAAATTGCCCCAAACAAGTAGT | 59.036 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
3381 | 3923 | 3.539604 | AGCAGCTACAATTCACCATCTC | 58.460 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
3416 | 3958 | 9.864034 | CATCGATACTTGTACAAAATAATCCAC | 57.136 | 33.333 | 10.03 | 0.00 | 0.00 | 4.02 |
3536 | 4079 | 7.218228 | TGATGTCAGCAACAAAGTTGATTAT | 57.782 | 32.000 | 13.58 | 2.33 | 42.37 | 1.28 |
3669 | 4212 | 5.468072 | GCCATGTACAGATAATGAGAAGTGG | 59.532 | 44.000 | 0.33 | 0.15 | 0.00 | 4.00 |
3675 | 4218 | 6.932356 | ACAAAGCCATGTACAGATAATGAG | 57.068 | 37.500 | 0.33 | 0.00 | 0.00 | 2.90 |
3704 | 4247 | 4.155462 | ACAGTATGACGATACGTGTGAACT | 59.845 | 41.667 | 0.00 | 0.00 | 41.37 | 3.01 |
3782 | 4333 | 4.968719 | TCTAAAGCTCCATACCATTCAGGA | 59.031 | 41.667 | 0.00 | 0.00 | 41.22 | 3.86 |
4167 | 4719 | 7.681939 | ACCGAAAGAGCAAACTGAATTAATA | 57.318 | 32.000 | 0.00 | 0.00 | 0.00 | 0.98 |
4335 | 5057 | 7.394099 | GCAAACTAGCAAAGAAAAAGAAAGTG | 58.606 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
4361 | 5083 | 5.350504 | AGTTAGTGAGAACATCATGGGAG | 57.649 | 43.478 | 0.00 | 0.00 | 40.92 | 4.30 |
4443 | 5165 | 2.645797 | CCTCCCTTACAGGTAAACCCAA | 59.354 | 50.000 | 0.00 | 0.00 | 36.42 | 4.12 |
4732 | 5523 | 8.230486 | GTCAGTGCTACACATATATTTATTGCC | 58.770 | 37.037 | 0.00 | 0.00 | 36.74 | 4.52 |
4782 | 5573 | 7.067129 | TGTTAGATCACATAGACTACAGGACAC | 59.933 | 40.741 | 0.00 | 0.00 | 0.00 | 3.67 |
4931 | 5729 | 5.745312 | TTCTCTTAGTCTTCAGCCAATGA | 57.255 | 39.130 | 0.00 | 0.00 | 35.62 | 2.57 |
4954 | 5752 | 0.780090 | AAAATCACCCTGGGTCCCCT | 60.780 | 55.000 | 17.46 | 0.00 | 31.02 | 4.79 |
4981 | 5779 | 3.197766 | CCTTACTGGATCTGTTGGCTACA | 59.802 | 47.826 | 1.11 | 1.11 | 38.35 | 2.74 |
4982 | 5780 | 3.451178 | TCCTTACTGGATCTGTTGGCTAC | 59.549 | 47.826 | 0.00 | 0.00 | 40.56 | 3.58 |
4983 | 5781 | 3.719871 | TCCTTACTGGATCTGTTGGCTA | 58.280 | 45.455 | 0.00 | 0.00 | 40.56 | 3.93 |
4984 | 5782 | 2.551270 | TCCTTACTGGATCTGTTGGCT | 58.449 | 47.619 | 0.00 | 0.00 | 40.56 | 4.75 |
4985 | 5783 | 3.274288 | CTTCCTTACTGGATCTGTTGGC | 58.726 | 50.000 | 0.00 | 0.00 | 45.68 | 4.52 |
4986 | 5784 | 3.054802 | AGCTTCCTTACTGGATCTGTTGG | 60.055 | 47.826 | 0.00 | 0.00 | 45.68 | 3.77 |
4987 | 5785 | 4.213564 | AGCTTCCTTACTGGATCTGTTG | 57.786 | 45.455 | 0.00 | 0.00 | 45.68 | 3.33 |
4988 | 5786 | 4.141824 | GCTAGCTTCCTTACTGGATCTGTT | 60.142 | 45.833 | 7.70 | 0.00 | 45.68 | 3.16 |
4989 | 5787 | 3.386402 | GCTAGCTTCCTTACTGGATCTGT | 59.614 | 47.826 | 7.70 | 0.00 | 45.68 | 3.41 |
4990 | 5788 | 3.244044 | GGCTAGCTTCCTTACTGGATCTG | 60.244 | 52.174 | 15.72 | 0.00 | 45.68 | 2.90 |
5203 | 6001 | 1.039856 | ACGCCCTTTCTGTTTGCATT | 58.960 | 45.000 | 0.00 | 0.00 | 0.00 | 3.56 |
5204 | 6002 | 1.812571 | CTACGCCCTTTCTGTTTGCAT | 59.187 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
5205 | 6003 | 1.234821 | CTACGCCCTTTCTGTTTGCA | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
5206 | 6004 | 0.521735 | CCTACGCCCTTTCTGTTTGC | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
5207 | 6005 | 0.521735 | GCCTACGCCCTTTCTGTTTG | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
5208 | 6006 | 0.109723 | TGCCTACGCCCTTTCTGTTT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5209 | 6007 | 0.328258 | ATGCCTACGCCCTTTCTGTT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5217 | 6015 | 1.388547 | TGATCAAAATGCCTACGCCC | 58.611 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
5229 | 6027 | 8.469200 | CCATAATTAAGGCTCTTGTTGATCAAA | 58.531 | 33.333 | 10.35 | 0.00 | 35.48 | 2.69 |
5250 | 6048 | 4.338012 | TCTTGACGTCTACCACTCCATAA | 58.662 | 43.478 | 17.92 | 0.00 | 0.00 | 1.90 |
5307 | 6105 | 3.782656 | TTGAGAACTAAGTCCCCAACC | 57.217 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
5395 | 6193 | 3.846588 | ACACTCCTAACCATGTCTTCCAT | 59.153 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
5756 | 6564 | 2.322355 | ATCCTGCTGGACAAGAATCG | 57.678 | 50.000 | 15.36 | 0.00 | 46.51 | 3.34 |
5762 | 6570 | 0.613260 | ACGCTTATCCTGCTGGACAA | 59.387 | 50.000 | 15.36 | 8.96 | 46.51 | 3.18 |
5795 | 6603 | 2.507484 | TGAGCTTCCACCACTTCATTG | 58.493 | 47.619 | 0.00 | 0.00 | 0.00 | 2.82 |
5883 | 6692 | 1.018752 | TCATCCACACATTGTCCGCG | 61.019 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
5959 | 6768 | 6.007703 | AGGTATCCTTATCTTCTCTTCTCCG | 58.992 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
6050 | 6859 | 1.555075 | TGTTGACTGCACTCCTATCCC | 59.445 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
6148 | 6958 | 0.600782 | TTCGTGCCTAACCGTTGGTC | 60.601 | 55.000 | 0.00 | 0.00 | 33.12 | 4.02 |
6184 | 6994 | 4.838423 | TCGGATCTTGGCCATCTTATAGAA | 59.162 | 41.667 | 6.09 | 0.00 | 0.00 | 2.10 |
6210 | 7020 | 2.897969 | GGCCAATATCCTCGTCTTCCTA | 59.102 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
6266 | 7079 | 0.966920 | TCTCCTCGTCCTTCACCAAC | 59.033 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
6340 | 7153 | 4.159879 | AGTCGTCCAGTTTAATGGTAGGAG | 59.840 | 45.833 | 0.00 | 0.00 | 41.43 | 3.69 |
6370 | 7183 | 2.358898 | ACAAAACACATGCTGGTCTCAC | 59.641 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
6384 | 7197 | 1.336440 | CTGGATTCGCCACACAAAACA | 59.664 | 47.619 | 0.00 | 0.00 | 43.33 | 2.83 |
6393 | 7206 | 1.191489 | TCAGACACCTGGATTCGCCA | 61.191 | 55.000 | 0.00 | 0.00 | 46.96 | 5.69 |
6406 | 7219 | 0.178921 | AGCCTCCTTGACCTCAGACA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
6496 | 7309 | 3.702792 | AGCCATACTATCGCTATGTCCT | 58.297 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
6530 | 7343 | 3.057019 | GTTTGCCCGAAAAATGAGGTTC | 58.943 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
6597 | 7410 | 2.821969 | CTCTGACATCCCCCTTGTTTTG | 59.178 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
6746 | 7562 | 3.008266 | CCAAGAAAATGGCTTCCATGGTT | 59.992 | 43.478 | 12.58 | 0.00 | 44.40 | 3.67 |
6841 | 7657 | 5.185249 | ACATTCCGCGGTATCTTATCATAGT | 59.815 | 40.000 | 27.15 | 8.84 | 0.00 | 2.12 |
6972 | 7788 | 4.672587 | TCTTAATCGGGAAGTCATCAGG | 57.327 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
7022 | 7838 | 4.735369 | TCACCAAGGCAAAAAGATAAGGA | 58.265 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
7178 | 7995 | 7.087895 | AGTTCTACTAAGCCTAAACCCTTTT | 57.912 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
7229 | 8048 | 6.183361 | CCTCCTCCTCACACATAGTAGTACTA | 60.183 | 46.154 | 12.38 | 12.38 | 34.82 | 1.82 |
7240 | 8059 | 1.267121 | GCTAACCTCCTCCTCACACA | 58.733 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
7274 | 8096 | 0.492276 | AGGTGTCCTTCTGGGGTACT | 59.508 | 55.000 | 0.00 | 0.00 | 35.33 | 2.73 |
7363 | 8185 | 2.577059 | GCCACTTCATCCGTCCGA | 59.423 | 61.111 | 0.00 | 0.00 | 0.00 | 4.55 |
7368 | 8190 | 2.745884 | TTGGCGCCACTTCATCCG | 60.746 | 61.111 | 32.95 | 0.00 | 0.00 | 4.18 |
7414 | 8236 | 1.069978 | TGCCTTTTAGCTTTTGTGGCC | 59.930 | 47.619 | 0.00 | 0.00 | 38.23 | 5.36 |
7477 | 8299 | 2.623878 | TTTAGTCGGCCAACACTCAA | 57.376 | 45.000 | 2.24 | 0.00 | 0.00 | 3.02 |
7500 | 8326 | 5.060506 | CCACACCTAACTGTTAACATGTCA | 58.939 | 41.667 | 9.13 | 0.00 | 0.00 | 3.58 |
7592 | 8419 | 3.451178 | GTGCTACCCCAACTCTTATCTCA | 59.549 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
7598 | 8425 | 1.145571 | TTGGTGCTACCCCAACTCTT | 58.854 | 50.000 | 3.33 | 0.00 | 37.50 | 2.85 |
7706 | 8533 | 3.006430 | TCTTGACATTCTCCGCACACTTA | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
7710 | 8537 | 1.618343 | TCTCTTGACATTCTCCGCACA | 59.382 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
7825 | 8652 | 2.025981 | ACATGGATAGCAAGCTTCCACA | 60.026 | 45.455 | 20.41 | 8.68 | 42.09 | 4.17 |
7861 | 8688 | 4.494091 | ACCCATAAGATCTTGTGACCAG | 57.506 | 45.455 | 28.07 | 17.34 | 34.19 | 4.00 |
8447 | 9284 | 4.252971 | AGTTAGCGAAACTTGAGCAGTA | 57.747 | 40.909 | 2.06 | 0.00 | 46.61 | 2.74 |
8521 | 9360 | 8.438513 | CAGAACAGTAACAGTTAATCATCACAG | 58.561 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
8633 | 9472 | 1.842562 | ACCATGCTACAGCCAAGATCT | 59.157 | 47.619 | 0.00 | 0.00 | 41.18 | 2.75 |
8748 | 9684 | 0.690762 | ACAACCCGGCATTGTCTAGT | 59.309 | 50.000 | 14.71 | 0.00 | 35.32 | 2.57 |
8750 | 9686 | 1.612199 | GGAACAACCCGGCATTGTCTA | 60.612 | 52.381 | 19.24 | 0.00 | 39.36 | 2.59 |
8751 | 9687 | 0.893727 | GGAACAACCCGGCATTGTCT | 60.894 | 55.000 | 19.24 | 11.50 | 39.36 | 3.41 |
8752 | 9688 | 1.175983 | TGGAACAACCCGGCATTGTC | 61.176 | 55.000 | 19.24 | 13.47 | 39.36 | 3.18 |
8753 | 9689 | 1.152652 | TGGAACAACCCGGCATTGT | 60.153 | 52.632 | 14.71 | 14.71 | 42.07 | 2.71 |
8928 | 9864 | 3.948719 | TGGTCCACGAAGGCCCAC | 61.949 | 66.667 | 0.00 | 0.00 | 41.50 | 4.61 |
8980 | 9916 | 1.707632 | CTCAAGGAGACTCGCACTTG | 58.292 | 55.000 | 11.62 | 11.62 | 42.68 | 3.16 |
8984 | 9920 | 0.610509 | AGAGCTCAAGGAGACTCGCA | 60.611 | 55.000 | 17.77 | 0.00 | 42.68 | 5.10 |
9012 | 9948 | 1.227380 | CCGCGGAAGGATGAAGAGG | 60.227 | 63.158 | 24.07 | 0.00 | 0.00 | 3.69 |
9013 | 9949 | 1.884926 | GCCGCGGAAGGATGAAGAG | 60.885 | 63.158 | 33.48 | 0.00 | 0.00 | 2.85 |
9016 | 9952 | 4.483243 | GGGCCGCGGAAGGATGAA | 62.483 | 66.667 | 33.48 | 0.00 | 0.00 | 2.57 |
9097 | 10038 | 2.356553 | CTCGAACCGGCGAACCAA | 60.357 | 61.111 | 9.30 | 0.00 | 40.13 | 3.67 |
9116 | 10057 | 1.091771 | GCAGCACAGCCGTCATATGT | 61.092 | 55.000 | 1.90 | 0.00 | 0.00 | 2.29 |
9117 | 10058 | 0.812811 | AGCAGCACAGCCGTCATATG | 60.813 | 55.000 | 0.00 | 0.00 | 34.23 | 1.78 |
9119 | 10060 | 1.448365 | CAGCAGCACAGCCGTCATA | 60.448 | 57.895 | 0.00 | 0.00 | 34.23 | 2.15 |
9161 | 10102 | 2.841215 | TCCCCAAAACTGTAACTGTCG | 58.159 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
9395 | 10340 | 3.923273 | AGGAAACCCCCTCTTTTGATT | 57.077 | 42.857 | 0.00 | 0.00 | 34.66 | 2.57 |
9412 | 10374 | 4.632688 | GGTTTCGTTAATGAAATCGGAGGA | 59.367 | 41.667 | 22.33 | 0.00 | 39.80 | 3.71 |
9417 | 10379 | 5.037015 | TGGTGGTTTCGTTAATGAAATCG | 57.963 | 39.130 | 22.33 | 0.58 | 40.97 | 3.34 |
9530 | 10492 | 6.468956 | CGTTTGTGGATTATGTTCAGTTATGC | 59.531 | 38.462 | 0.00 | 0.00 | 0.00 | 3.14 |
9537 | 10499 | 4.457603 | CCCTTCGTTTGTGGATTATGTTCA | 59.542 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
9569 | 10531 | 7.038302 | AGGATCTGGTTCTTATGTTTACTGTCA | 60.038 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
9578 | 10540 | 8.793592 | GTTTGTTTTAGGATCTGGTTCTTATGT | 58.206 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
9579 | 10541 | 7.962918 | CGTTTGTTTTAGGATCTGGTTCTTATG | 59.037 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
9580 | 10542 | 7.361799 | GCGTTTGTTTTAGGATCTGGTTCTTAT | 60.362 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
9581 | 10543 | 6.072893 | GCGTTTGTTTTAGGATCTGGTTCTTA | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
9582 | 10544 | 5.278315 | GCGTTTGTTTTAGGATCTGGTTCTT | 60.278 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
9583 | 10545 | 4.215613 | GCGTTTGTTTTAGGATCTGGTTCT | 59.784 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
9584 | 10546 | 4.023536 | TGCGTTTGTTTTAGGATCTGGTTC | 60.024 | 41.667 | 0.00 | 0.00 | 0.00 | 3.62 |
9585 | 10547 | 3.886505 | TGCGTTTGTTTTAGGATCTGGTT | 59.113 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
9586 | 10548 | 3.482436 | TGCGTTTGTTTTAGGATCTGGT | 58.518 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
9587 | 10549 | 3.670627 | GCTGCGTTTGTTTTAGGATCTGG | 60.671 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
9588 | 10550 | 3.058293 | TGCTGCGTTTGTTTTAGGATCTG | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
9589 | 10551 | 3.146066 | TGCTGCGTTTGTTTTAGGATCT | 58.854 | 40.909 | 0.00 | 0.00 | 0.00 | 2.75 |
9590 | 10552 | 3.188460 | TCTGCTGCGTTTGTTTTAGGATC | 59.812 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
9591 | 10553 | 3.058224 | GTCTGCTGCGTTTGTTTTAGGAT | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
9592 | 10554 | 2.289547 | GTCTGCTGCGTTTGTTTTAGGA | 59.710 | 45.455 | 0.00 | 0.00 | 0.00 | 2.94 |
9593 | 10555 | 2.032799 | TGTCTGCTGCGTTTGTTTTAGG | 59.967 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
9594 | 10556 | 3.035942 | GTGTCTGCTGCGTTTGTTTTAG | 58.964 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
9595 | 10557 | 2.420372 | TGTGTCTGCTGCGTTTGTTTTA | 59.580 | 40.909 | 0.00 | 0.00 | 0.00 | 1.52 |
9596 | 10558 | 1.201181 | TGTGTCTGCTGCGTTTGTTTT | 59.799 | 42.857 | 0.00 | 0.00 | 0.00 | 2.43 |
9597 | 10559 | 0.808125 | TGTGTCTGCTGCGTTTGTTT | 59.192 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
9598 | 10560 | 0.098728 | GTGTGTCTGCTGCGTTTGTT | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
9599 | 10561 | 1.024046 | TGTGTGTCTGCTGCGTTTGT | 61.024 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
9600 | 10562 | 0.098552 | TTGTGTGTCTGCTGCGTTTG | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
9604 | 10566 | 1.369689 | GCTTTGTGTGTCTGCTGCG | 60.370 | 57.895 | 0.00 | 0.00 | 0.00 | 5.18 |
9626 | 10588 | 0.528017 | CACTAGCCTCTTCAGCGACA | 59.472 | 55.000 | 0.00 | 0.00 | 34.64 | 4.35 |
9641 | 10603 | 2.263895 | AGATAACCAGGGGTGCACTA | 57.736 | 50.000 | 17.98 | 0.00 | 35.34 | 2.74 |
9644 | 10606 | 2.116238 | GACTAGATAACCAGGGGTGCA | 58.884 | 52.381 | 0.00 | 0.00 | 35.34 | 4.57 |
9645 | 10607 | 2.365941 | GAGACTAGATAACCAGGGGTGC | 59.634 | 54.545 | 0.00 | 0.00 | 35.34 | 5.01 |
9646 | 10608 | 3.639094 | CAGAGACTAGATAACCAGGGGTG | 59.361 | 52.174 | 0.00 | 0.00 | 35.34 | 4.61 |
9649 | 10611 | 3.068873 | GTGCAGAGACTAGATAACCAGGG | 59.931 | 52.174 | 0.00 | 0.00 | 0.00 | 4.45 |
9650 | 10612 | 3.068873 | GGTGCAGAGACTAGATAACCAGG | 59.931 | 52.174 | 0.00 | 0.00 | 0.00 | 4.45 |
9651 | 10613 | 3.068873 | GGGTGCAGAGACTAGATAACCAG | 59.931 | 52.174 | 0.00 | 0.00 | 0.00 | 4.00 |
9687 | 10717 | 3.801114 | AACTGAAGGAAAAACAGTGGC | 57.199 | 42.857 | 0.00 | 0.00 | 42.81 | 5.01 |
9688 | 10718 | 6.884280 | AGATAACTGAAGGAAAAACAGTGG | 57.116 | 37.500 | 0.00 | 0.00 | 42.81 | 4.00 |
9689 | 10719 | 8.608844 | ACTAGATAACTGAAGGAAAAACAGTG | 57.391 | 34.615 | 0.00 | 0.00 | 42.81 | 3.66 |
9690 | 10720 | 8.652290 | AGACTAGATAACTGAAGGAAAAACAGT | 58.348 | 33.333 | 0.00 | 0.00 | 45.02 | 3.55 |
9691 | 10721 | 9.145865 | GAGACTAGATAACTGAAGGAAAAACAG | 57.854 | 37.037 | 0.00 | 0.00 | 37.62 | 3.16 |
9692 | 10722 | 8.871125 | AGAGACTAGATAACTGAAGGAAAAACA | 58.129 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
9693 | 10723 | 9.145865 | CAGAGACTAGATAACTGAAGGAAAAAC | 57.854 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
9694 | 10724 | 8.871125 | ACAGAGACTAGATAACTGAAGGAAAAA | 58.129 | 33.333 | 0.00 | 0.00 | 33.53 | 1.94 |
9695 | 10725 | 8.423906 | ACAGAGACTAGATAACTGAAGGAAAA | 57.576 | 34.615 | 0.00 | 0.00 | 33.53 | 2.29 |
9696 | 10726 | 8.958506 | GTACAGAGACTAGATAACTGAAGGAAA | 58.041 | 37.037 | 0.00 | 0.00 | 33.53 | 3.13 |
9697 | 10727 | 7.556996 | GGTACAGAGACTAGATAACTGAAGGAA | 59.443 | 40.741 | 0.00 | 0.00 | 33.53 | 3.36 |
9698 | 10728 | 7.055378 | GGTACAGAGACTAGATAACTGAAGGA | 58.945 | 42.308 | 0.00 | 0.00 | 33.53 | 3.36 |
9699 | 10729 | 6.263617 | GGGTACAGAGACTAGATAACTGAAGG | 59.736 | 46.154 | 0.00 | 0.00 | 33.53 | 3.46 |
9700 | 10730 | 6.263617 | GGGGTACAGAGACTAGATAACTGAAG | 59.736 | 46.154 | 0.00 | 0.00 | 33.53 | 3.02 |
9701 | 10731 | 6.068971 | AGGGGTACAGAGACTAGATAACTGAA | 60.069 | 42.308 | 0.00 | 0.00 | 33.53 | 3.02 |
9702 | 10732 | 5.432390 | AGGGGTACAGAGACTAGATAACTGA | 59.568 | 44.000 | 0.00 | 0.00 | 33.53 | 3.41 |
9703 | 10733 | 5.533154 | CAGGGGTACAGAGACTAGATAACTG | 59.467 | 48.000 | 0.00 | 3.31 | 35.14 | 3.16 |
9704 | 10734 | 5.399267 | CCAGGGGTACAGAGACTAGATAACT | 60.399 | 48.000 | 0.00 | 0.00 | 0.00 | 2.24 |
9705 | 10735 | 4.828387 | CCAGGGGTACAGAGACTAGATAAC | 59.172 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
9706 | 10736 | 4.481280 | ACCAGGGGTACAGAGACTAGATAA | 59.519 | 45.833 | 0.00 | 0.00 | 32.11 | 1.75 |
9707 | 10737 | 4.052922 | ACCAGGGGTACAGAGACTAGATA | 58.947 | 47.826 | 0.00 | 0.00 | 32.11 | 1.98 |
9708 | 10738 | 2.860041 | ACCAGGGGTACAGAGACTAGAT | 59.140 | 50.000 | 0.00 | 0.00 | 32.11 | 1.98 |
9709 | 10739 | 2.241685 | GACCAGGGGTACAGAGACTAGA | 59.758 | 54.545 | 0.00 | 0.00 | 35.25 | 2.43 |
9710 | 10740 | 2.242708 | AGACCAGGGGTACAGAGACTAG | 59.757 | 54.545 | 0.00 | 0.00 | 35.25 | 2.57 |
9711 | 10741 | 2.241685 | GAGACCAGGGGTACAGAGACTA | 59.758 | 54.545 | 0.00 | 0.00 | 35.25 | 2.59 |
9712 | 10742 | 1.006162 | GAGACCAGGGGTACAGAGACT | 59.994 | 57.143 | 0.00 | 0.00 | 35.25 | 3.24 |
9713 | 10743 | 1.476477 | GAGACCAGGGGTACAGAGAC | 58.524 | 60.000 | 0.00 | 0.00 | 35.25 | 3.36 |
9714 | 10744 | 0.335361 | GGAGACCAGGGGTACAGAGA | 59.665 | 60.000 | 0.00 | 0.00 | 35.25 | 3.10 |
9715 | 10745 | 0.041238 | TGGAGACCAGGGGTACAGAG | 59.959 | 60.000 | 0.00 | 0.00 | 35.25 | 3.35 |
9716 | 10746 | 0.252103 | GTGGAGACCAGGGGTACAGA | 60.252 | 60.000 | 0.00 | 0.00 | 35.25 | 3.41 |
9717 | 10747 | 0.544357 | TGTGGAGACCAGGGGTACAG | 60.544 | 60.000 | 0.00 | 0.00 | 35.25 | 2.74 |
9718 | 10748 | 0.834687 | GTGTGGAGACCAGGGGTACA | 60.835 | 60.000 | 0.00 | 0.00 | 35.25 | 2.90 |
9719 | 10749 | 1.551019 | GGTGTGGAGACCAGGGGTAC | 61.551 | 65.000 | 0.00 | 0.00 | 35.25 | 3.34 |
9720 | 10750 | 1.229400 | GGTGTGGAGACCAGGGGTA | 60.229 | 63.158 | 0.00 | 0.00 | 35.25 | 3.69 |
9721 | 10751 | 2.529389 | GGTGTGGAGACCAGGGGT | 60.529 | 66.667 | 0.00 | 0.00 | 39.44 | 4.95 |
9722 | 10752 | 2.203998 | AGGTGTGGAGACCAGGGG | 60.204 | 66.667 | 0.00 | 0.00 | 38.63 | 4.79 |
9723 | 10753 | 1.843376 | ACAGGTGTGGAGACCAGGG | 60.843 | 63.158 | 0.00 | 0.00 | 38.63 | 4.45 |
9724 | 10754 | 1.121407 | TCACAGGTGTGGAGACCAGG | 61.121 | 60.000 | 10.18 | 0.00 | 45.65 | 4.45 |
9725 | 10755 | 0.034059 | GTCACAGGTGTGGAGACCAG | 59.966 | 60.000 | 10.18 | 0.00 | 45.65 | 4.00 |
9726 | 10756 | 1.744320 | CGTCACAGGTGTGGAGACCA | 61.744 | 60.000 | 10.18 | 0.00 | 45.65 | 4.02 |
9727 | 10757 | 1.006102 | CGTCACAGGTGTGGAGACC | 60.006 | 63.158 | 10.18 | 0.00 | 45.65 | 3.85 |
9728 | 10758 | 1.664965 | GCGTCACAGGTGTGGAGAC | 60.665 | 63.158 | 10.18 | 0.87 | 45.65 | 3.36 |
9729 | 10759 | 1.806461 | GAGCGTCACAGGTGTGGAGA | 61.806 | 60.000 | 10.18 | 0.00 | 45.65 | 3.71 |
9730 | 10760 | 1.373497 | GAGCGTCACAGGTGTGGAG | 60.373 | 63.158 | 10.18 | 5.94 | 45.65 | 3.86 |
9731 | 10761 | 2.734591 | GAGCGTCACAGGTGTGGA | 59.265 | 61.111 | 10.18 | 0.00 | 45.65 | 4.02 |
9732 | 10762 | 2.492449 | ATCGAGCGTCACAGGTGTGG | 62.492 | 60.000 | 10.18 | 0.00 | 45.65 | 4.17 |
9733 | 10763 | 0.170339 | TATCGAGCGTCACAGGTGTG | 59.830 | 55.000 | 3.56 | 3.56 | 46.91 | 3.82 |
9734 | 10764 | 1.103803 | ATATCGAGCGTCACAGGTGT | 58.896 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
9735 | 10765 | 3.560902 | ATATATCGAGCGTCACAGGTG | 57.439 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
9736 | 10766 | 4.037565 | TGAAATATATCGAGCGTCACAGGT | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
9741 | 10771 | 4.444388 | GCAAGTGAAATATATCGAGCGTCA | 59.556 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
9769 | 10799 | 0.876342 | GGGGCAAGAGTAATCGAGCG | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
9773 | 10803 | 1.339631 | TGTTGGGGGCAAGAGTAATCG | 60.340 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
9779 | 10809 | 0.038744 | ACTGATGTTGGGGGCAAGAG | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
9802 | 10832 | 7.015584 | AGTGAAAGATAAAAACCCAGAGCAAAT | 59.984 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
9803 | 10833 | 6.323739 | AGTGAAAGATAAAAACCCAGAGCAAA | 59.676 | 34.615 | 0.00 | 0.00 | 0.00 | 3.68 |
9806 | 10836 | 5.966742 | AGTGAAAGATAAAAACCCAGAGC | 57.033 | 39.130 | 0.00 | 0.00 | 0.00 | 4.09 |
9809 | 10839 | 6.089249 | AGCAAGTGAAAGATAAAAACCCAG | 57.911 | 37.500 | 0.00 | 0.00 | 0.00 | 4.45 |
9814 | 10844 | 6.249035 | CGGGTAGCAAGTGAAAGATAAAAA | 57.751 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
9815 | 10845 | 5.873179 | CGGGTAGCAAGTGAAAGATAAAA | 57.127 | 39.130 | 0.00 | 0.00 | 0.00 | 1.52 |
9831 | 10861 | 2.859032 | GCAAGAGTAATCGAGCGGGTAG | 60.859 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
9832 | 10862 | 1.066605 | GCAAGAGTAATCGAGCGGGTA | 59.933 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
9833 | 10863 | 0.179108 | GCAAGAGTAATCGAGCGGGT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
9834 | 10864 | 0.876342 | GGCAAGAGTAATCGAGCGGG | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
9835 | 10865 | 0.876342 | GGGCAAGAGTAATCGAGCGG | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 5.52 |
9836 | 10866 | 0.876342 | GGGGCAAGAGTAATCGAGCG | 60.876 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
9837 | 10867 | 0.533085 | GGGGGCAAGAGTAATCGAGC | 60.533 | 60.000 | 0.00 | 1.99 | 0.00 | 5.03 |
9838 | 10868 | 0.830648 | TGGGGGCAAGAGTAATCGAG | 59.169 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
9839 | 10869 | 1.065709 | GTTGGGGGCAAGAGTAATCGA | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.59 |
9840 | 10870 | 1.339631 | TGTTGGGGGCAAGAGTAATCG | 60.340 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
9841 | 10871 | 2.507407 | TGTTGGGGGCAAGAGTAATC | 57.493 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
9842 | 10872 | 4.017499 | ACTTATGTTGGGGGCAAGAGTAAT | 60.017 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
9843 | 10873 | 3.332485 | ACTTATGTTGGGGGCAAGAGTAA | 59.668 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
9844 | 10874 | 2.916934 | ACTTATGTTGGGGGCAAGAGTA | 59.083 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
9845 | 10875 | 1.710809 | ACTTATGTTGGGGGCAAGAGT | 59.289 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
9846 | 10876 | 2.514458 | ACTTATGTTGGGGGCAAGAG | 57.486 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
9847 | 10877 | 2.356741 | GCTACTTATGTTGGGGGCAAGA | 60.357 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
9848 | 10878 | 2.024414 | GCTACTTATGTTGGGGGCAAG | 58.976 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
9849 | 10879 | 1.356059 | TGCTACTTATGTTGGGGGCAA | 59.644 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
9850 | 10880 | 0.995803 | TGCTACTTATGTTGGGGGCA | 59.004 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
9851 | 10881 | 2.364972 | ATGCTACTTATGTTGGGGGC | 57.635 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
9852 | 10882 | 3.181476 | GCAAATGCTACTTATGTTGGGGG | 60.181 | 47.826 | 0.00 | 0.00 | 38.21 | 5.40 |
9853 | 10883 | 4.045636 | GCAAATGCTACTTATGTTGGGG | 57.954 | 45.455 | 0.00 | 0.00 | 38.21 | 4.96 |
9867 | 10897 | 4.866486 | CAGATAAAAACCCAGAGCAAATGC | 59.134 | 41.667 | 0.00 | 0.00 | 42.49 | 3.56 |
9868 | 10898 | 4.866486 | GCAGATAAAAACCCAGAGCAAATG | 59.134 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
9869 | 10899 | 4.527816 | TGCAGATAAAAACCCAGAGCAAAT | 59.472 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
9870 | 10900 | 3.894427 | TGCAGATAAAAACCCAGAGCAAA | 59.106 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
9871 | 10901 | 3.495331 | TGCAGATAAAAACCCAGAGCAA | 58.505 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
9872 | 10902 | 3.153369 | TGCAGATAAAAACCCAGAGCA | 57.847 | 42.857 | 0.00 | 0.00 | 0.00 | 4.26 |
9873 | 10903 | 4.519540 | TTTGCAGATAAAAACCCAGAGC | 57.480 | 40.909 | 0.00 | 0.00 | 0.00 | 4.09 |
9874 | 10904 | 7.970614 | GTCTATTTTGCAGATAAAAACCCAGAG | 59.029 | 37.037 | 0.00 | 0.00 | 33.67 | 3.35 |
9875 | 10905 | 7.093945 | GGTCTATTTTGCAGATAAAAACCCAGA | 60.094 | 37.037 | 0.00 | 0.00 | 33.67 | 3.86 |
9876 | 10906 | 7.035612 | GGTCTATTTTGCAGATAAAAACCCAG | 58.964 | 38.462 | 0.00 | 0.00 | 33.67 | 4.45 |
9877 | 10907 | 6.495181 | TGGTCTATTTTGCAGATAAAAACCCA | 59.505 | 34.615 | 8.35 | 0.00 | 33.67 | 4.51 |
9878 | 10908 | 6.930731 | TGGTCTATTTTGCAGATAAAAACCC | 58.069 | 36.000 | 8.35 | 0.00 | 33.67 | 4.11 |
9879 | 10909 | 9.087424 | GATTGGTCTATTTTGCAGATAAAAACC | 57.913 | 33.333 | 0.00 | 0.00 | 33.67 | 3.27 |
9880 | 10910 | 9.638239 | TGATTGGTCTATTTTGCAGATAAAAAC | 57.362 | 29.630 | 0.00 | 0.00 | 33.67 | 2.43 |
9889 | 10919 | 5.163663 | GGATCGTTGATTGGTCTATTTTGCA | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 4.08 |
9899 | 10929 | 5.007034 | TGTGTAATTGGATCGTTGATTGGT | 58.993 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.