Multiple sequence alignment - TraesCS7B01G018600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G018600 chr7B 100.000 9962 0 0 1 9962 15601835 15591874 0.000000e+00 18397.0
1 TraesCS7B01G018600 chr7B 88.079 755 35 25 261 986 150664703 150663975 0.000000e+00 845.0
2 TraesCS7B01G018600 chr7B 87.698 756 37 25 261 986 113942984 113942255 0.000000e+00 830.0
3 TraesCS7B01G018600 chr7B 88.246 536 44 8 4999 5534 527620424 527619908 3.060000e-174 623.0
4 TraesCS7B01G018600 chr7B 97.222 72 2 0 9752 9823 15592017 15591946 1.360000e-23 122.0
5 TraesCS7B01G018600 chr7B 97.222 72 2 0 9819 9890 15592084 15592013 1.360000e-23 122.0
6 TraesCS7B01G018600 chr7B 98.276 58 1 0 100 157 113943050 113942993 1.770000e-17 102.0
7 TraesCS7B01G018600 chr7D 97.682 3883 75 7 825 4694 72938380 72942260 0.000000e+00 6658.0
8 TraesCS7B01G018600 chr7D 95.670 3995 116 26 4694 8669 72942329 72946285 0.000000e+00 6366.0
9 TraesCS7B01G018600 chr7D 95.710 909 30 5 8672 9579 72946385 72947285 0.000000e+00 1454.0
10 TraesCS7B01G018600 chr7D 86.424 604 30 14 1 592 72937458 72938021 1.840000e-171 614.0
11 TraesCS7B01G018600 chr7D 100.000 35 0 0 9653 9687 72947399 72947433 2.320000e-06 65.8
12 TraesCS7B01G018600 chr7A 95.027 3519 137 19 825 4323 77440485 77436985 0.000000e+00 5494.0
13 TraesCS7B01G018600 chr7A 90.573 838 43 13 8774 9579 77435197 77434364 0.000000e+00 1077.0
14 TraesCS7B01G018600 chr7A 92.653 735 41 6 7943 8669 77436091 77435362 0.000000e+00 1046.0
15 TraesCS7B01G018600 chr7A 89.631 704 34 22 81 772 77441532 77440856 0.000000e+00 859.0
16 TraesCS7B01G018600 chr7A 94.400 375 15 5 4321 4694 77436816 77436447 1.120000e-158 571.0
17 TraesCS7B01G018600 chr7A 89.206 315 21 7 4694 5000 77436380 77436071 2.030000e-101 381.0
18 TraesCS7B01G018600 chr7A 89.583 144 14 1 9819 9962 77434199 77434057 2.210000e-41 182.0
19 TraesCS7B01G018600 chr7A 91.026 78 7 0 8668 8745 77435269 77435192 1.370000e-18 106.0
20 TraesCS7B01G018600 chr7A 92.857 56 2 2 9384 9437 212558765 212558710 8.290000e-11 80.5
21 TraesCS7B01G018600 chr2D 95.404 2959 117 7 4999 7946 106329751 106332701 0.000000e+00 4693.0
22 TraesCS7B01G018600 chr2D 94.589 2957 138 12 4999 7941 456321993 456319045 0.000000e+00 4554.0
23 TraesCS7B01G018600 chr2D 94.444 54 2 1 9384 9436 439162954 439162901 2.310000e-11 82.4
24 TraesCS7B01G018600 chr2D 86.486 74 5 5 9379 9447 507160503 507160430 1.070000e-09 76.8
25 TraesCS7B01G018600 chr2D 78.125 96 16 5 9824 9916 543213457 543213550 1.000000e-03 56.5
26 TraesCS7B01G018600 chr3A 95.375 2962 116 8 4999 7947 217720283 217717330 0.000000e+00 4691.0
27 TraesCS7B01G018600 chr3A 90.013 741 45 10 5000 5734 290433184 290432467 0.000000e+00 931.0
28 TraesCS7B01G018600 chr3A 87.143 70 3 6 9384 9447 200297239 200297170 3.860000e-09 75.0
29 TraesCS7B01G018600 chr2A 95.327 2953 119 7 5001 7942 421216335 421219279 0.000000e+00 4671.0
30 TraesCS7B01G018600 chr2A 95.528 2728 110 7 5221 7940 179280305 179283028 0.000000e+00 4351.0
31 TraesCS7B01G018600 chr2A 87.169 756 42 23 261 986 732304578 732303848 0.000000e+00 808.0
32 TraesCS7B01G018600 chr2A 98.276 58 1 0 100 157 732304644 732304587 1.770000e-17 102.0
33 TraesCS7B01G018600 chr4D 95.169 2960 122 10 4998 7945 83143915 83146865 0.000000e+00 4654.0
34 TraesCS7B01G018600 chr4D 95.203 2835 114 8 4999 7819 323566067 323563241 0.000000e+00 4462.0
35 TraesCS7B01G018600 chr4D 92.727 55 2 2 9384 9436 23894667 23894721 2.980000e-10 78.7
36 TraesCS7B01G018600 chr4D 92.727 55 2 2 9384 9436 196812115 196812169 2.980000e-10 78.7
37 TraesCS7B01G018600 chr4D 94.118 51 2 1 9387 9436 171777969 171778019 1.070000e-09 76.8
38 TraesCS7B01G018600 chr4D 91.071 56 2 3 9384 9436 109665280 109665335 1.390000e-08 73.1
39 TraesCS7B01G018600 chr4D 90.909 55 3 2 9384 9436 170312107 170312053 1.390000e-08 73.1
40 TraesCS7B01G018600 chr4D 91.071 56 2 3 9384 9436 218162217 218162272 1.390000e-08 73.1
41 TraesCS7B01G018600 chr4D 88.710 62 2 5 9384 9440 130836769 130836830 4.990000e-08 71.3
42 TraesCS7B01G018600 chr4D 88.525 61 3 4 9384 9440 196659047 196658987 4.990000e-08 71.3
43 TraesCS7B01G018600 chr4D 88.710 62 2 5 9384 9440 361491086 361491025 4.990000e-08 71.3
44 TraesCS7B01G018600 chr6A 95.198 2957 117 11 4999 7946 258134901 258137841 0.000000e+00 4650.0
45 TraesCS7B01G018600 chr6A 95.164 2957 120 9 5001 7946 58018201 58015257 0.000000e+00 4647.0
46 TraesCS7B01G018600 chr6A 94.356 2959 144 9 4999 7943 567148004 567150953 0.000000e+00 4518.0
47 TraesCS7B01G018600 chrUn 94.747 2970 129 12 4999 7949 27369561 27366600 0.000000e+00 4595.0
48 TraesCS7B01G018600 chrUn 87.815 755 38 23 261 986 126388233 126388962 0.000000e+00 835.0
49 TraesCS7B01G018600 chrUn 100.000 408 0 0 2339 2746 477927517 477927110 0.000000e+00 754.0
50 TraesCS7B01G018600 chrUn 98.276 58 1 0 100 157 126388167 126388224 1.770000e-17 102.0
51 TraesCS7B01G018600 chrUn 90.909 55 3 2 9384 9436 58890477 58890531 1.390000e-08 73.1
52 TraesCS7B01G018600 chrUn 91.071 56 2 3 9384 9436 115305275 115305330 1.390000e-08 73.1
53 TraesCS7B01G018600 chrUn 90.909 55 3 2 9384 9436 115328260 115328314 1.390000e-08 73.1
54 TraesCS7B01G018600 chrUn 87.500 56 4 3 9384 9436 49522521 49522466 3.000000e-05 62.1
55 TraesCS7B01G018600 chrUn 85.714 63 3 6 9384 9440 358606959 358606897 3.000000e-05 62.1
56 TraesCS7B01G018600 chrUn 85.714 63 3 6 9384 9440 385168437 385168499 3.000000e-05 62.1
57 TraesCS7B01G018600 chr6D 94.824 2956 125 12 4999 7940 158353841 158356782 0.000000e+00 4586.0
58 TraesCS7B01G018600 chr6D 94.231 52 1 2 9387 9436 170707169 170707118 2.980000e-10 78.7
59 TraesCS7B01G018600 chr6D 94.118 51 2 1 9387 9436 216988880 216988830 1.070000e-09 76.8
60 TraesCS7B01G018600 chr6D 90.164 61 2 4 9384 9440 271995383 271995323 1.070000e-09 76.8
61 TraesCS7B01G018600 chr6D 90.000 60 3 3 9384 9440 49004549 49004490 3.860000e-09 75.0
62 TraesCS7B01G018600 chr1B 93.619 2962 158 15 4999 7944 177180042 177182988 0.000000e+00 4394.0
63 TraesCS7B01G018600 chr1B 86.490 755 48 28 261 986 61192962 61192233 0.000000e+00 780.0
64 TraesCS7B01G018600 chr1B 98.276 58 1 0 100 157 61193028 61192971 1.770000e-17 102.0
65 TraesCS7B01G018600 chr1B 90.323 62 1 5 9384 9440 315690726 315690787 1.070000e-09 76.8
66 TraesCS7B01G018600 chr3B 88.079 755 36 23 261 986 777668980 777669709 0.000000e+00 846.0
67 TraesCS7B01G018600 chr3B 90.034 582 24 9 261 833 807473989 807474545 0.000000e+00 723.0
68 TraesCS7B01G018600 chr3B 96.552 58 2 0 100 157 807473923 807473980 8.240000e-16 97.1
69 TraesCS7B01G018600 chr5B 87.682 755 39 23 261 986 520287064 520286335 0.000000e+00 830.0
70 TraesCS7B01G018600 chr3D 91.222 581 19 9 261 833 9498390 9497834 0.000000e+00 761.0
71 TraesCS7B01G018600 chr3D 100.000 58 0 0 100 157 9498456 9498399 3.800000e-19 108.0
72 TraesCS7B01G018600 chr3D 91.525 59 4 1 9379 9436 289980093 289980151 8.290000e-11 80.5
73 TraesCS7B01G018600 chr3D 92.857 56 1 3 9384 9436 247982624 247982569 2.980000e-10 78.7
74 TraesCS7B01G018600 chr3D 92.857 56 1 3 9384 9436 265638717 265638772 2.980000e-10 78.7
75 TraesCS7B01G018600 chr3D 92.593 54 3 1 9384 9436 356497658 356497711 1.070000e-09 76.8
76 TraesCS7B01G018600 chr3D 87.879 66 4 4 9379 9440 332374858 332374793 3.860000e-09 75.0
77 TraesCS7B01G018600 chr3D 87.692 65 4 4 9387 9447 406570778 406570842 1.390000e-08 73.1
78 TraesCS7B01G018600 chr4B 86.773 688 37 23 328 986 672588537 672587875 0.000000e+00 717.0
79 TraesCS7B01G018600 chr4B 92.857 56 1 3 9384 9436 280124499 280124444 2.980000e-10 78.7
80 TraesCS7B01G018600 chr2B 90.741 162 5 1 825 986 506806650 506806499 3.650000e-49 207.0
81 TraesCS7B01G018600 chr2B 98.276 58 1 0 100 157 506806891 506806834 1.770000e-17 102.0
82 TraesCS7B01G018600 chr1A 80.147 136 22 5 9824 9956 542887585 542887452 8.240000e-16 97.1
83 TraesCS7B01G018600 chr5A 94.340 53 2 1 9384 9435 268958312 268958260 8.290000e-11 80.5
84 TraesCS7B01G018600 chr5A 84.416 77 6 6 9387 9457 392271448 392271372 4.990000e-08 71.3
85 TraesCS7B01G018600 chr1D 92.857 56 1 3 9384 9436 148102635 148102690 2.980000e-10 78.7
86 TraesCS7B01G018600 chr1D 88.710 62 2 5 9384 9440 122889001 122889062 4.990000e-08 71.3
87 TraesCS7B01G018600 chr1D 88.525 61 3 4 9384 9440 171620095 171620035 4.990000e-08 71.3
88 TraesCS7B01G018600 chr6B 90.000 60 4 2 9379 9436 549967646 549967705 1.070000e-09 76.8
89 TraesCS7B01G018600 chr5D 90.164 61 2 4 9384 9440 478773289 478773349 1.070000e-09 76.8
90 TraesCS7B01G018600 chr4A 88.235 68 3 5 9384 9447 175027088 175027022 1.070000e-09 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G018600 chr7B 15591874 15601835 9961 True 18397.00 18397 100.000000 1 9962 1 chr7B.!!$R1 9961
1 TraesCS7B01G018600 chr7B 150663975 150664703 728 True 845.00 845 88.079000 261 986 1 chr7B.!!$R2 725
2 TraesCS7B01G018600 chr7B 527619908 527620424 516 True 623.00 623 88.246000 4999 5534 1 chr7B.!!$R3 535
3 TraesCS7B01G018600 chr7B 113942255 113943050 795 True 466.00 830 92.987000 100 986 2 chr7B.!!$R5 886
4 TraesCS7B01G018600 chr7D 72937458 72947433 9975 False 3031.56 6658 95.097200 1 9687 5 chr7D.!!$F1 9686
5 TraesCS7B01G018600 chr7A 77434057 77441532 7475 True 1214.50 5494 91.512375 81 9962 8 chr7A.!!$R2 9881
6 TraesCS7B01G018600 chr2D 106329751 106332701 2950 False 4693.00 4693 95.404000 4999 7946 1 chr2D.!!$F1 2947
7 TraesCS7B01G018600 chr2D 456319045 456321993 2948 True 4554.00 4554 94.589000 4999 7941 1 chr2D.!!$R2 2942
8 TraesCS7B01G018600 chr3A 217717330 217720283 2953 True 4691.00 4691 95.375000 4999 7947 1 chr3A.!!$R2 2948
9 TraesCS7B01G018600 chr3A 290432467 290433184 717 True 931.00 931 90.013000 5000 5734 1 chr3A.!!$R3 734
10 TraesCS7B01G018600 chr2A 421216335 421219279 2944 False 4671.00 4671 95.327000 5001 7942 1 chr2A.!!$F2 2941
11 TraesCS7B01G018600 chr2A 179280305 179283028 2723 False 4351.00 4351 95.528000 5221 7940 1 chr2A.!!$F1 2719
12 TraesCS7B01G018600 chr2A 732303848 732304644 796 True 455.00 808 92.722500 100 986 2 chr2A.!!$R1 886
13 TraesCS7B01G018600 chr4D 83143915 83146865 2950 False 4654.00 4654 95.169000 4998 7945 1 chr4D.!!$F2 2947
14 TraesCS7B01G018600 chr4D 323563241 323566067 2826 True 4462.00 4462 95.203000 4999 7819 1 chr4D.!!$R3 2820
15 TraesCS7B01G018600 chr6A 258134901 258137841 2940 False 4650.00 4650 95.198000 4999 7946 1 chr6A.!!$F1 2947
16 TraesCS7B01G018600 chr6A 58015257 58018201 2944 True 4647.00 4647 95.164000 5001 7946 1 chr6A.!!$R1 2945
17 TraesCS7B01G018600 chr6A 567148004 567150953 2949 False 4518.00 4518 94.356000 4999 7943 1 chr6A.!!$F2 2944
18 TraesCS7B01G018600 chrUn 27366600 27369561 2961 True 4595.00 4595 94.747000 4999 7949 1 chrUn.!!$R1 2950
19 TraesCS7B01G018600 chrUn 126388167 126388962 795 False 468.50 835 93.045500 100 986 2 chrUn.!!$F5 886
20 TraesCS7B01G018600 chr6D 158353841 158356782 2941 False 4586.00 4586 94.824000 4999 7940 1 chr6D.!!$F1 2941
21 TraesCS7B01G018600 chr1B 177180042 177182988 2946 False 4394.00 4394 93.619000 4999 7944 1 chr1B.!!$F1 2945
22 TraesCS7B01G018600 chr1B 61192233 61193028 795 True 441.00 780 92.383000 100 986 2 chr1B.!!$R1 886
23 TraesCS7B01G018600 chr3B 777668980 777669709 729 False 846.00 846 88.079000 261 986 1 chr3B.!!$F1 725
24 TraesCS7B01G018600 chr3B 807473923 807474545 622 False 410.05 723 93.293000 100 833 2 chr3B.!!$F2 733
25 TraesCS7B01G018600 chr5B 520286335 520287064 729 True 830.00 830 87.682000 261 986 1 chr5B.!!$R1 725
26 TraesCS7B01G018600 chr3D 9497834 9498456 622 True 434.50 761 95.611000 100 833 2 chr3D.!!$R3 733
27 TraesCS7B01G018600 chr4B 672587875 672588537 662 True 717.00 717 86.773000 328 986 1 chr4B.!!$R2 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 883 0.673333 TGCAGTAAGTCACATGGGCG 60.673 55.000 0.00 0.0 0.00 6.13 F
1059 1590 0.238289 GCATCGTGTTTGTGACTGGG 59.762 55.000 0.00 0.0 0.00 4.45 F
2022 2553 1.285950 GGAAACAGTGGCTTTCCGC 59.714 57.895 8.94 0.0 37.89 5.54 F
3360 3902 2.064434 TGGTTCAGCATGTTTGGACA 57.936 45.000 11.38 0.0 40.71 4.02 F
3416 3958 0.737219 GCTGCTTGATGTTGGCTAGG 59.263 55.000 0.00 0.0 0.00 3.02 F
3896 4447 1.073964 CAGTTGTGACAGCAGATCGG 58.926 55.000 1.54 0.0 0.00 4.18 F
5756 6564 0.238553 GTTGCTGACTTCCGCTTTCC 59.761 55.000 0.00 0.0 0.00 3.13 F
6746 7562 0.038166 GTTTCATGCCTGGGAGGTCA 59.962 55.000 0.00 0.0 37.80 4.02 F
7022 7838 1.004044 CATCAGGGGTCAGCTTTGAGT 59.996 52.381 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 2536 4.944249 GCGGAAAGCCACTGTTTC 57.056 55.556 0.00 0.00 40.81 2.78 R
2849 3391 2.223852 GGGTGCGGTGTTGTAATTTTGT 60.224 45.455 0.00 0.00 0.00 2.83 R
3381 3923 3.539604 AGCAGCTACAATTCACCATCTC 58.460 45.455 0.00 0.00 0.00 2.75 R
5208 6006 0.109723 TGCCTACGCCCTTTCTGTTT 59.890 50.000 0.00 0.00 0.00 2.83 R
5209 6007 0.328258 ATGCCTACGCCCTTTCTGTT 59.672 50.000 0.00 0.00 0.00 3.16 R
5762 6570 0.613260 ACGCTTATCCTGCTGGACAA 59.387 50.000 15.36 8.96 46.51 3.18 R
7274 8096 0.492276 AGGTGTCCTTCTGGGGTACT 59.508 55.000 0.00 0.00 35.33 2.73 R
7598 8425 1.145571 TTGGTGCTACCCCAACTCTT 58.854 50.000 3.33 0.00 37.50 2.85 R
8984 9920 0.610509 AGAGCTCAAGGAGACTCGCA 60.611 55.000 17.77 0.00 42.68 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.156373 TGATACTACGTCCGTTGTTCATCA 59.844 41.667 11.73 12.18 35.82 3.07
57 58 2.942710 ACTACGTCCGTTGTTCATCAG 58.057 47.619 0.00 0.00 30.56 2.90
58 59 1.654105 CTACGTCCGTTGTTCATCAGC 59.346 52.381 0.00 0.00 0.00 4.26
77 78 2.170607 AGCCGTACAGATTTACCAGCAT 59.829 45.455 0.00 0.00 0.00 3.79
247 349 3.065925 CAGCAGACATATCACTCGACTGA 59.934 47.826 0.00 0.00 0.00 3.41
248 350 3.066064 AGCAGACATATCACTCGACTGAC 59.934 47.826 0.00 0.00 0.00 3.51
249 351 3.793801 GCAGACATATCACTCGACTGACC 60.794 52.174 0.00 0.00 0.00 4.02
250 352 2.614520 AGACATATCACTCGACTGACCG 59.385 50.000 0.00 0.00 0.00 4.79
251 353 1.676529 ACATATCACTCGACTGACCGG 59.323 52.381 0.00 0.00 0.00 5.28
252 354 1.947456 CATATCACTCGACTGACCGGA 59.053 52.381 9.46 0.00 0.00 5.14
253 355 1.664873 TATCACTCGACTGACCGGAG 58.335 55.000 9.46 0.00 0.00 4.63
418 533 5.943416 TCTTAACATGACACTGGGGTTTATG 59.057 40.000 0.00 0.00 0.00 1.90
464 579 7.547019 TCAGCACTCAACTGATTTTACTGATAG 59.453 37.037 0.00 0.00 39.21 2.08
465 580 7.547019 CAGCACTCAACTGATTTTACTGATAGA 59.453 37.037 0.00 0.00 37.32 1.98
466 581 7.547370 AGCACTCAACTGATTTTACTGATAGAC 59.453 37.037 0.00 0.00 0.00 2.59
467 582 7.331934 GCACTCAACTGATTTTACTGATAGACA 59.668 37.037 0.00 0.00 0.00 3.41
468 583 9.376075 CACTCAACTGATTTTACTGATAGACAT 57.624 33.333 0.00 0.00 0.00 3.06
510 626 0.679002 AGTGGACATGCACATGAGCC 60.679 55.000 17.19 16.19 41.20 4.70
514 630 2.277737 CATGCACATGAGCCCCCT 59.722 61.111 12.78 0.00 41.20 4.79
551 667 8.692110 TGCAATGCTTCTTTCTGTTTTATATG 57.308 30.769 6.82 0.00 0.00 1.78
670 883 0.673333 TGCAGTAAGTCACATGGGCG 60.673 55.000 0.00 0.00 0.00 6.13
886 1417 2.837591 TGTTCTGCTAATGCCTGTCCTA 59.162 45.455 0.00 0.00 38.71 2.94
957 1488 2.517127 AGGGATTGCTGAGGATTCCATT 59.483 45.455 15.23 2.22 0.00 3.16
1008 1539 3.009253 AGGATTCTGAGATCATGGATGCC 59.991 47.826 0.00 0.00 0.00 4.40
1011 1542 3.487120 TCTGAGATCATGGATGCCAAG 57.513 47.619 0.00 0.00 36.95 3.61
1014 1545 2.714793 TGAGATCATGGATGCCAAGGAT 59.285 45.455 0.00 0.00 36.95 3.24
1035 1566 6.174049 GGATCAACCTCAAGCTAAAGTTACT 58.826 40.000 0.00 0.00 35.41 2.24
1038 1569 3.586892 ACCTCAAGCTAAAGTTACTCGC 58.413 45.455 0.00 0.00 0.00 5.03
1059 1590 0.238289 GCATCGTGTTTGTGACTGGG 59.762 55.000 0.00 0.00 0.00 4.45
1143 1674 4.357947 GCTGCTCGTGGTCACCGA 62.358 66.667 0.00 0.00 0.00 4.69
1170 1701 7.282224 GTGATGGTTGTAATGCCAAGATACTTA 59.718 37.037 0.00 0.00 38.38 2.24
1326 1857 8.375506 ACACAATCACCTTCTTATTCTCTGTTA 58.624 33.333 0.00 0.00 0.00 2.41
1389 1920 3.004106 GCCCTGCAAAGACATATGTGATC 59.996 47.826 14.43 0.00 0.00 2.92
1449 1980 7.693951 GCGCATGAAGGTCAAAATATGATATAC 59.306 37.037 0.30 0.00 40.97 1.47
1689 2220 5.807909 ACCAATTTTATTCTGCCAATTGCT 58.192 33.333 0.00 0.00 42.00 3.91
2005 2536 1.548269 AGAAGCTCTCAGGAACTTCGG 59.452 52.381 0.00 0.00 44.68 4.30
2022 2553 1.285950 GGAAACAGTGGCTTTCCGC 59.714 57.895 8.94 0.00 37.89 5.54
2053 2584 6.236017 TCGTCTGTTGATATTTTTGTCCAC 57.764 37.500 0.00 0.00 0.00 4.02
2235 2769 4.160736 TGTCGATCATCCGTCATATCAC 57.839 45.455 0.00 0.00 0.00 3.06
2325 2862 6.246919 ACTAAGCTCCTAGTTGACTAAGTCA 58.753 40.000 0.00 0.00 41.09 3.41
2746 3288 3.406764 AGTTCAGAGATTGCACTTCACC 58.593 45.455 0.00 0.00 28.23 4.02
3109 3651 2.595463 GTGGTCTGCTGCTGCCAA 60.595 61.111 18.59 0.00 38.71 4.52
3335 3877 7.534085 TCATTTGTTCCATTATACGAGTCAC 57.466 36.000 0.00 0.00 0.00 3.67
3360 3902 2.064434 TGGTTCAGCATGTTTGGACA 57.936 45.000 11.38 0.00 40.71 4.02
3381 3923 4.057432 CACTACTTGTTTGGGGCAATTTG 58.943 43.478 0.00 0.00 0.00 2.32
3416 3958 0.737219 GCTGCTTGATGTTGGCTAGG 59.263 55.000 0.00 0.00 0.00 3.02
3420 3962 1.340017 GCTTGATGTTGGCTAGGTGGA 60.340 52.381 0.00 0.00 0.00 4.02
3536 4079 8.893219 TGCATGTTAAATTGGTTTTCATTACA 57.107 26.923 0.00 0.00 0.00 2.41
3669 4212 2.084546 GCACATCAGGTTTGGGTCTAC 58.915 52.381 0.00 0.00 0.00 2.59
3782 4333 1.830486 ATCCTGATCTGGGATTGCCT 58.170 50.000 17.73 0.00 40.31 4.75
3896 4447 1.073964 CAGTTGTGACAGCAGATCGG 58.926 55.000 1.54 0.00 0.00 4.18
3982 4534 1.879380 TCAATTGCCCTGTCTTTCACG 59.121 47.619 0.00 0.00 0.00 4.35
4167 4719 3.959495 ATAGATGGATGGGTTGCAAGT 57.041 42.857 0.00 0.00 0.00 3.16
4361 5083 6.535150 ACTTTCTTTTTCTTTGCTAGTTTGCC 59.465 34.615 0.00 0.00 0.00 4.52
4643 5366 1.191489 TCATGAGGGAGGACGTGCAA 61.191 55.000 10.52 0.00 0.00 4.08
4732 5523 5.407995 TGCAAGTTTTGAAACAAAGTTGGAG 59.592 36.000 13.12 3.37 41.30 3.86
4782 5573 1.539929 GCAGTGCCACTATAGCTGGAG 60.540 57.143 19.53 0.00 0.00 3.86
4931 5729 7.065120 TCCATTCCAACATTTCTTGTTTCAT 57.935 32.000 0.00 0.00 46.51 2.57
4954 5752 6.114187 TCATTGGCTGAAGACTAAGAGAAA 57.886 37.500 0.00 0.00 0.00 2.52
4981 5779 3.165071 CCCAGGGTGATTTTAGCAGTTT 58.835 45.455 0.00 0.00 0.00 2.66
4982 5780 3.056607 CCCAGGGTGATTTTAGCAGTTTG 60.057 47.826 0.00 0.00 0.00 2.93
4983 5781 3.573967 CCAGGGTGATTTTAGCAGTTTGT 59.426 43.478 0.00 0.00 0.00 2.83
4984 5782 4.764823 CCAGGGTGATTTTAGCAGTTTGTA 59.235 41.667 0.00 0.00 0.00 2.41
4985 5783 5.106157 CCAGGGTGATTTTAGCAGTTTGTAG 60.106 44.000 0.00 0.00 0.00 2.74
4986 5784 4.459337 AGGGTGATTTTAGCAGTTTGTAGC 59.541 41.667 0.00 0.00 0.00 3.58
4987 5785 4.380550 GGGTGATTTTAGCAGTTTGTAGCC 60.381 45.833 0.00 0.00 0.00 3.93
4988 5786 4.217550 GGTGATTTTAGCAGTTTGTAGCCA 59.782 41.667 0.00 0.00 0.00 4.75
4989 5787 5.278758 GGTGATTTTAGCAGTTTGTAGCCAA 60.279 40.000 0.00 0.00 0.00 4.52
4990 5788 5.629435 GTGATTTTAGCAGTTTGTAGCCAAC 59.371 40.000 0.00 0.00 0.00 3.77
5024 5822 1.228306 GCTAGCCGAGCCTAGGAGA 60.228 63.158 14.75 0.00 46.41 3.71
5206 6004 2.573340 GGGGACGGCTGCAAAATG 59.427 61.111 0.50 0.00 0.00 2.32
5207 6005 2.125952 GGGACGGCTGCAAAATGC 60.126 61.111 0.50 0.00 45.29 3.56
5250 6048 6.815142 GCATTTTGATCAACAAGAGCCTTAAT 59.185 34.615 7.89 0.00 39.77 1.40
5307 6105 2.787473 TTATCCTGGTCAAGCTGGTG 57.213 50.000 5.23 0.00 0.00 4.17
5395 6193 1.151810 AGGGAGTTCTGGGAAGGCA 60.152 57.895 0.00 0.00 0.00 4.75
5577 6384 4.681942 GCCTACGACATGATTGTAGCTAAG 59.318 45.833 0.00 0.00 42.20 2.18
5580 6387 4.352039 ACGACATGATTGTAGCTAAGACG 58.648 43.478 0.00 0.00 35.79 4.18
5714 6521 2.035632 GGTGATACCTGGAGAGAGTGG 58.964 57.143 0.00 0.00 34.73 4.00
5756 6564 0.238553 GTTGCTGACTTCCGCTTTCC 59.761 55.000 0.00 0.00 0.00 3.13
5762 6570 1.275291 TGACTTCCGCTTTCCGATTCT 59.725 47.619 0.00 0.00 40.02 2.40
5795 6603 2.474712 GCGTGCCAAAGTCGCTAC 59.525 61.111 0.00 0.00 45.29 3.58
5883 6692 1.229853 TTGGGAGGAAGGAGGGGAC 60.230 63.158 0.00 0.00 0.00 4.46
5967 6776 1.305046 GTCCAGGGGACGGAGAAGA 60.305 63.158 0.00 0.00 43.14 2.87
6050 6859 2.787601 TGCTTTAGACGCCTATACCG 57.212 50.000 0.00 0.00 0.00 4.02
6148 6958 1.179174 TCGGGCATATGAGGACCTCG 61.179 60.000 16.81 3.46 32.35 4.63
6210 7020 1.727062 AGATGGCCAAGATCCGAGAT 58.273 50.000 10.96 0.00 0.00 2.75
6340 7153 2.239654 TGTTCAATGGGGAGGATGAGAC 59.760 50.000 0.00 0.00 0.00 3.36
6370 7183 2.256117 AAACTGGACGACTCCTTTGG 57.744 50.000 0.00 0.00 37.48 3.28
6393 7206 2.358898 GAGACCAGCATGTGTTTTGTGT 59.641 45.455 0.00 0.00 0.00 3.72
6496 7309 1.827399 GAGGTGTGGAAAGGCCTCGA 61.827 60.000 5.23 0.00 38.22 4.04
6530 7343 9.777382 GCGATAGTATGGCTAACCAAGCTTTTG 62.777 44.444 9.67 0.00 45.33 2.44
6746 7562 0.038166 GTTTCATGCCTGGGAGGTCA 59.962 55.000 0.00 0.00 37.80 4.02
6841 7657 4.389374 GTGTTCATTGACTTGGAGAAGGA 58.611 43.478 0.00 0.00 32.95 3.36
6972 7788 2.060326 TCGAACAAGTGATGTCGACC 57.940 50.000 14.12 0.00 42.99 4.79
7022 7838 1.004044 CATCAGGGGTCAGCTTTGAGT 59.996 52.381 0.00 0.00 0.00 3.41
7178 7995 3.874383 TGGAGACAAACCTTGGAATCA 57.126 42.857 0.00 0.00 37.44 2.57
7229 8048 2.415168 CGAGTACATGATGTGCGGTTTT 59.585 45.455 8.61 0.00 38.05 2.43
7240 8059 7.104043 TGATGTGCGGTTTTAGTACTACTAT 57.896 36.000 0.91 0.00 29.64 2.12
7363 8185 5.551760 GATGTGAACCATCGAATCAAAGT 57.448 39.130 0.00 0.00 40.60 2.66
7368 8190 2.618053 ACCATCGAATCAAAGTCGGAC 58.382 47.619 0.00 0.00 39.01 4.79
7414 8236 3.190118 GGCATTCTTTGTGACAAGAGAGG 59.810 47.826 0.00 3.43 0.00 3.69
7444 8266 6.901081 AAAGCTAAAAGGCAAGTTCTACAT 57.099 33.333 0.00 0.00 34.17 2.29
7449 8271 3.678056 AAGGCAAGTTCTACATGACGA 57.322 42.857 0.00 0.00 28.58 4.20
7477 8299 1.083489 CCCGCAATGTTGTATGACGT 58.917 50.000 0.00 0.00 0.00 4.34
7500 8326 1.142262 AGTGTTGGCCGACTAAAAGGT 59.858 47.619 23.87 0.00 0.00 3.50
7592 8419 6.015856 GGATCGAGTCCGGAATGATGATATAT 60.016 42.308 10.26 0.00 37.23 0.86
7598 8425 9.072375 GAGTCCGGAATGATGATATATGAGATA 57.928 37.037 10.26 0.00 0.00 1.98
7825 8652 1.008449 ACTAGCTATGGACAGGGGTGT 59.992 52.381 0.00 0.00 0.00 4.16
7861 8688 1.453379 ATGTGCCAGAGCCATGAGC 60.453 57.895 0.00 0.00 44.25 4.26
7984 8814 7.148239 CCAGTTGATCAGTGGTATCTTTTTACC 60.148 40.741 15.16 0.00 40.84 2.85
8228 9065 6.105657 TGCGATATATTGTTAATGCCATCG 57.894 37.500 1.88 0.00 37.63 3.84
8447 9284 0.033699 GAGGAGGGTACAGGGTACGT 60.034 60.000 0.00 0.00 0.00 3.57
8457 9294 1.544691 ACAGGGTACGTACTGCTCAAG 59.455 52.381 24.07 10.46 38.25 3.02
8461 9298 2.991866 GGGTACGTACTGCTCAAGTTTC 59.008 50.000 24.07 3.91 40.56 2.78
8521 9360 3.163630 ACATTGCGCCATAAATCAACC 57.836 42.857 4.18 0.00 0.00 3.77
8633 9472 4.737578 AGCTCTTGTCCGGTTATAGGATA 58.262 43.478 0.00 0.00 40.30 2.59
8748 9684 4.217767 AGTGTCTGCGATCTGTGTAACTAA 59.782 41.667 0.00 0.00 38.04 2.24
8750 9686 4.217767 TGTCTGCGATCTGTGTAACTAACT 59.782 41.667 0.00 0.00 38.04 2.24
8751 9687 5.413523 TGTCTGCGATCTGTGTAACTAACTA 59.586 40.000 0.00 0.00 38.04 2.24
8752 9688 5.966503 GTCTGCGATCTGTGTAACTAACTAG 59.033 44.000 0.00 0.00 38.04 2.57
8753 9689 5.878669 TCTGCGATCTGTGTAACTAACTAGA 59.121 40.000 0.00 0.00 38.04 2.43
8928 9864 2.852901 GCAGTACGAGCAGATCTTCGAG 60.853 54.545 20.72 6.26 0.00 4.04
9012 9948 3.446873 TCTCCTTGAGCTCTGAAGACATC 59.553 47.826 16.19 0.00 0.00 3.06
9013 9949 2.499289 TCCTTGAGCTCTGAAGACATCC 59.501 50.000 16.19 0.00 0.00 3.51
9016 9952 3.098774 TGAGCTCTGAAGACATCCTCT 57.901 47.619 16.19 0.00 0.00 3.69
9097 10038 2.260434 CAATGCGCCTGCTTGCTT 59.740 55.556 4.18 0.00 43.34 3.91
9116 10057 2.048877 GGTTCGCCGGTTCGAGAA 60.049 61.111 1.90 0.00 39.82 2.87
9117 10058 2.378084 GGTTCGCCGGTTCGAGAAC 61.378 63.158 1.90 11.21 40.49 3.01
9119 10060 1.012486 GTTCGCCGGTTCGAGAACAT 61.012 55.000 16.56 0.00 42.85 2.71
9161 10102 1.668151 GTGACAGCTTCGGGTGGAC 60.668 63.158 0.00 0.00 46.55 4.02
9530 10492 4.440839 AAAAGCTTAAAGATTCAGGCGG 57.559 40.909 0.00 0.00 0.00 6.13
9537 10499 2.717639 AAGATTCAGGCGGCATAACT 57.282 45.000 13.08 0.56 0.00 2.24
9569 10531 1.318576 CAAACGAAGGGACAAAGCCT 58.681 50.000 0.00 0.00 0.00 4.58
9578 10540 2.441750 AGGGACAAAGCCTGACAGTAAA 59.558 45.455 0.93 0.00 0.00 2.01
9579 10541 2.552743 GGGACAAAGCCTGACAGTAAAC 59.447 50.000 0.93 0.00 0.00 2.01
9580 10542 3.211045 GGACAAAGCCTGACAGTAAACA 58.789 45.455 0.93 0.00 0.00 2.83
9581 10543 3.821033 GGACAAAGCCTGACAGTAAACAT 59.179 43.478 0.93 0.00 0.00 2.71
9582 10544 5.001232 GGACAAAGCCTGACAGTAAACATA 58.999 41.667 0.93 0.00 0.00 2.29
9583 10545 5.472137 GGACAAAGCCTGACAGTAAACATAA 59.528 40.000 0.93 0.00 0.00 1.90
9584 10546 6.348540 GGACAAAGCCTGACAGTAAACATAAG 60.349 42.308 0.93 0.00 0.00 1.73
9585 10547 6.296026 ACAAAGCCTGACAGTAAACATAAGA 58.704 36.000 0.93 0.00 0.00 2.10
9586 10548 6.770785 ACAAAGCCTGACAGTAAACATAAGAA 59.229 34.615 0.93 0.00 0.00 2.52
9587 10549 6.803154 AAGCCTGACAGTAAACATAAGAAC 57.197 37.500 0.93 0.00 0.00 3.01
9588 10550 5.246307 AGCCTGACAGTAAACATAAGAACC 58.754 41.667 0.93 0.00 0.00 3.62
9589 10551 5.001232 GCCTGACAGTAAACATAAGAACCA 58.999 41.667 0.93 0.00 0.00 3.67
9590 10552 5.122396 GCCTGACAGTAAACATAAGAACCAG 59.878 44.000 0.93 0.00 0.00 4.00
9591 10553 6.464222 CCTGACAGTAAACATAAGAACCAGA 58.536 40.000 0.93 0.00 0.00 3.86
9592 10554 7.106239 CCTGACAGTAAACATAAGAACCAGAT 58.894 38.462 0.93 0.00 0.00 2.90
9593 10555 7.278868 CCTGACAGTAAACATAAGAACCAGATC 59.721 40.741 0.93 0.00 0.00 2.75
9594 10556 7.103641 TGACAGTAAACATAAGAACCAGATCC 58.896 38.462 0.00 0.00 0.00 3.36
9595 10557 7.038302 TGACAGTAAACATAAGAACCAGATCCT 60.038 37.037 0.00 0.00 0.00 3.24
9596 10558 8.375493 ACAGTAAACATAAGAACCAGATCCTA 57.625 34.615 0.00 0.00 0.00 2.94
9597 10559 8.822805 ACAGTAAACATAAGAACCAGATCCTAA 58.177 33.333 0.00 0.00 0.00 2.69
9598 10560 9.667107 CAGTAAACATAAGAACCAGATCCTAAA 57.333 33.333 0.00 0.00 0.00 1.85
9604 10566 8.793592 ACATAAGAACCAGATCCTAAAACAAAC 58.206 33.333 0.00 0.00 0.00 2.93
9626 10588 1.335810 CAGCAGACACACAAAGCACAT 59.664 47.619 0.00 0.00 0.00 3.21
9641 10603 0.390866 CACATGTCGCTGAAGAGGCT 60.391 55.000 0.00 0.00 0.00 4.58
9644 10606 1.135915 CATGTCGCTGAAGAGGCTAGT 59.864 52.381 0.00 0.00 0.00 2.57
9645 10607 0.528017 TGTCGCTGAAGAGGCTAGTG 59.472 55.000 0.00 0.00 0.00 2.74
9646 10608 0.804156 GTCGCTGAAGAGGCTAGTGC 60.804 60.000 0.00 0.00 38.76 4.40
9649 10611 0.742635 GCTGAAGAGGCTAGTGCACC 60.743 60.000 14.63 0.00 41.91 5.01
9650 10612 0.107945 CTGAAGAGGCTAGTGCACCC 60.108 60.000 14.63 7.97 41.91 4.61
9651 10613 1.222113 GAAGAGGCTAGTGCACCCC 59.778 63.158 14.63 11.90 41.91 4.95
9691 10721 4.394712 CTGGTCTCCACCCGCCAC 62.395 72.222 0.00 0.00 42.99 5.01
9692 10722 4.954118 TGGTCTCCACCCGCCACT 62.954 66.667 0.00 0.00 42.99 4.00
9693 10723 4.394712 GGTCTCCACCCGCCACTG 62.395 72.222 0.00 0.00 36.54 3.66
9694 10724 3.626924 GTCTCCACCCGCCACTGT 61.627 66.667 0.00 0.00 0.00 3.55
9695 10725 2.847234 TCTCCACCCGCCACTGTT 60.847 61.111 0.00 0.00 0.00 3.16
9696 10726 2.113139 CTCCACCCGCCACTGTTT 59.887 61.111 0.00 0.00 0.00 2.83
9697 10727 1.528309 CTCCACCCGCCACTGTTTT 60.528 57.895 0.00 0.00 0.00 2.43
9698 10728 1.076632 TCCACCCGCCACTGTTTTT 60.077 52.632 0.00 0.00 0.00 1.94
9699 10729 1.104577 TCCACCCGCCACTGTTTTTC 61.105 55.000 0.00 0.00 0.00 2.29
9700 10730 1.362355 CACCCGCCACTGTTTTTCC 59.638 57.895 0.00 0.00 0.00 3.13
9701 10731 1.106944 CACCCGCCACTGTTTTTCCT 61.107 55.000 0.00 0.00 0.00 3.36
9702 10732 0.396556 ACCCGCCACTGTTTTTCCTT 60.397 50.000 0.00 0.00 0.00 3.36
9703 10733 0.313987 CCCGCCACTGTTTTTCCTTC 59.686 55.000 0.00 0.00 0.00 3.46
9704 10734 1.028905 CCGCCACTGTTTTTCCTTCA 58.971 50.000 0.00 0.00 0.00 3.02
9705 10735 1.001378 CCGCCACTGTTTTTCCTTCAG 60.001 52.381 0.00 0.00 35.60 3.02
9706 10736 1.676006 CGCCACTGTTTTTCCTTCAGT 59.324 47.619 0.00 0.00 42.14 3.41
9707 10737 2.099098 CGCCACTGTTTTTCCTTCAGTT 59.901 45.455 0.00 0.00 39.89 3.16
9708 10738 3.314080 CGCCACTGTTTTTCCTTCAGTTA 59.686 43.478 0.00 0.00 39.89 2.24
9709 10739 4.023193 CGCCACTGTTTTTCCTTCAGTTAT 60.023 41.667 0.00 0.00 39.89 1.89
9710 10740 5.461526 GCCACTGTTTTTCCTTCAGTTATC 58.538 41.667 0.00 0.00 39.89 1.75
9711 10741 5.241728 GCCACTGTTTTTCCTTCAGTTATCT 59.758 40.000 0.00 0.00 39.89 1.98
9712 10742 6.430000 GCCACTGTTTTTCCTTCAGTTATCTA 59.570 38.462 0.00 0.00 39.89 1.98
9713 10743 7.361286 GCCACTGTTTTTCCTTCAGTTATCTAG 60.361 40.741 0.00 0.00 39.89 2.43
9714 10744 7.661847 CCACTGTTTTTCCTTCAGTTATCTAGT 59.338 37.037 0.00 0.00 39.89 2.57
9715 10745 8.713271 CACTGTTTTTCCTTCAGTTATCTAGTC 58.287 37.037 0.00 0.00 39.89 2.59
9716 10746 8.652290 ACTGTTTTTCCTTCAGTTATCTAGTCT 58.348 33.333 0.00 0.00 39.00 3.24
9717 10747 9.145865 CTGTTTTTCCTTCAGTTATCTAGTCTC 57.854 37.037 0.00 0.00 0.00 3.36
9718 10748 8.871125 TGTTTTTCCTTCAGTTATCTAGTCTCT 58.129 33.333 0.00 0.00 0.00 3.10
9719 10749 9.145865 GTTTTTCCTTCAGTTATCTAGTCTCTG 57.854 37.037 0.00 0.00 0.00 3.35
9720 10750 8.423906 TTTTCCTTCAGTTATCTAGTCTCTGT 57.576 34.615 0.00 0.00 0.00 3.41
9721 10751 9.529823 TTTTCCTTCAGTTATCTAGTCTCTGTA 57.470 33.333 0.00 0.00 0.00 2.74
9722 10752 8.508883 TTCCTTCAGTTATCTAGTCTCTGTAC 57.491 38.462 0.00 0.00 0.00 2.90
9723 10753 7.055378 TCCTTCAGTTATCTAGTCTCTGTACC 58.945 42.308 0.00 0.00 0.00 3.34
9724 10754 6.263617 CCTTCAGTTATCTAGTCTCTGTACCC 59.736 46.154 0.00 0.00 0.00 3.69
9725 10755 5.692928 TCAGTTATCTAGTCTCTGTACCCC 58.307 45.833 0.00 0.00 0.00 4.95
9726 10756 5.432390 TCAGTTATCTAGTCTCTGTACCCCT 59.568 44.000 0.00 0.00 0.00 4.79
9727 10757 5.533154 CAGTTATCTAGTCTCTGTACCCCTG 59.467 48.000 0.00 0.00 0.00 4.45
9728 10758 3.603965 ATCTAGTCTCTGTACCCCTGG 57.396 52.381 0.00 0.00 0.00 4.45
9729 10759 2.285707 TCTAGTCTCTGTACCCCTGGT 58.714 52.381 0.00 0.00 40.16 4.00
9730 10760 2.241685 TCTAGTCTCTGTACCCCTGGTC 59.758 54.545 0.00 0.00 37.09 4.02
9731 10761 1.085715 AGTCTCTGTACCCCTGGTCT 58.914 55.000 0.00 0.00 37.09 3.85
9732 10762 1.006162 AGTCTCTGTACCCCTGGTCTC 59.994 57.143 0.00 0.00 37.09 3.36
9733 10763 0.335361 TCTCTGTACCCCTGGTCTCC 59.665 60.000 0.00 0.00 37.09 3.71
9734 10764 0.041238 CTCTGTACCCCTGGTCTCCA 59.959 60.000 0.00 0.00 37.09 3.86
9735 10765 0.252103 TCTGTACCCCTGGTCTCCAC 60.252 60.000 0.00 0.00 37.09 4.02
9736 10766 0.544357 CTGTACCCCTGGTCTCCACA 60.544 60.000 0.00 0.00 37.09 4.17
9741 10771 1.843376 CCCTGGTCTCCACACCTGT 60.843 63.158 0.00 0.00 37.34 4.00
9759 10789 4.037565 ACCTGTGACGCTCGATATATTTCA 59.962 41.667 0.00 0.00 0.00 2.69
9769 10799 5.348997 GCTCGATATATTTCACTTGCTACCC 59.651 44.000 0.00 0.00 0.00 3.69
9773 10803 1.739067 ATTTCACTTGCTACCCGCTC 58.261 50.000 0.00 0.00 40.11 5.03
9779 10809 1.202382 ACTTGCTACCCGCTCGATTAC 60.202 52.381 0.00 0.00 40.11 1.89
9802 10832 1.302949 GCCCCCAACATCAGTAGCA 59.697 57.895 0.00 0.00 0.00 3.49
9803 10833 0.106519 GCCCCCAACATCAGTAGCAT 60.107 55.000 0.00 0.00 0.00 3.79
9806 10836 2.428171 CCCCCAACATCAGTAGCATTTG 59.572 50.000 0.00 0.00 0.00 2.32
9822 10852 5.077134 GCATTTGCTCTGGGTTTTTATCT 57.923 39.130 0.00 0.00 38.21 1.98
9823 10853 5.482006 GCATTTGCTCTGGGTTTTTATCTT 58.518 37.500 0.00 0.00 38.21 2.40
9824 10854 5.934043 GCATTTGCTCTGGGTTTTTATCTTT 59.066 36.000 0.00 0.00 38.21 2.52
9825 10855 6.091305 GCATTTGCTCTGGGTTTTTATCTTTC 59.909 38.462 0.00 0.00 38.21 2.62
9826 10856 6.723298 TTTGCTCTGGGTTTTTATCTTTCA 57.277 33.333 0.00 0.00 0.00 2.69
9827 10857 5.705609 TGCTCTGGGTTTTTATCTTTCAC 57.294 39.130 0.00 0.00 0.00 3.18
9828 10858 5.385198 TGCTCTGGGTTTTTATCTTTCACT 58.615 37.500 0.00 0.00 0.00 3.41
9829 10859 5.833131 TGCTCTGGGTTTTTATCTTTCACTT 59.167 36.000 0.00 0.00 0.00 3.16
9830 10860 6.152379 GCTCTGGGTTTTTATCTTTCACTTG 58.848 40.000 0.00 0.00 0.00 3.16
9831 10861 6.084326 TCTGGGTTTTTATCTTTCACTTGC 57.916 37.500 0.00 0.00 0.00 4.01
9832 10862 5.833131 TCTGGGTTTTTATCTTTCACTTGCT 59.167 36.000 0.00 0.00 0.00 3.91
9833 10863 7.001674 TCTGGGTTTTTATCTTTCACTTGCTA 58.998 34.615 0.00 0.00 0.00 3.49
9834 10864 6.977213 TGGGTTTTTATCTTTCACTTGCTAC 58.023 36.000 0.00 0.00 0.00 3.58
9835 10865 6.015772 TGGGTTTTTATCTTTCACTTGCTACC 60.016 38.462 0.00 0.00 0.00 3.18
9836 10866 6.387465 GGTTTTTATCTTTCACTTGCTACCC 58.613 40.000 0.00 0.00 0.00 3.69
9837 10867 5.873179 TTTTATCTTTCACTTGCTACCCG 57.127 39.130 0.00 0.00 0.00 5.28
9838 10868 1.739067 ATCTTTCACTTGCTACCCGC 58.261 50.000 0.00 0.00 39.77 6.13
9839 10869 0.685097 TCTTTCACTTGCTACCCGCT 59.315 50.000 0.00 0.00 40.11 5.52
9840 10870 1.079503 CTTTCACTTGCTACCCGCTC 58.920 55.000 0.00 0.00 40.11 5.03
9841 10871 0.669318 TTTCACTTGCTACCCGCTCG 60.669 55.000 0.00 0.00 40.11 5.03
9842 10872 1.529152 TTCACTTGCTACCCGCTCGA 61.529 55.000 0.00 0.00 40.11 4.04
9843 10873 1.141881 CACTTGCTACCCGCTCGAT 59.858 57.895 0.00 0.00 40.11 3.59
9844 10874 0.460284 CACTTGCTACCCGCTCGATT 60.460 55.000 0.00 0.00 40.11 3.34
9845 10875 1.108776 ACTTGCTACCCGCTCGATTA 58.891 50.000 0.00 0.00 40.11 1.75
9846 10876 1.202382 ACTTGCTACCCGCTCGATTAC 60.202 52.381 0.00 0.00 40.11 1.89
9847 10877 1.067212 CTTGCTACCCGCTCGATTACT 59.933 52.381 0.00 0.00 40.11 2.24
9848 10878 0.666913 TGCTACCCGCTCGATTACTC 59.333 55.000 0.00 0.00 40.11 2.59
9849 10879 0.953003 GCTACCCGCTCGATTACTCT 59.047 55.000 0.00 0.00 35.14 3.24
9850 10880 1.337387 GCTACCCGCTCGATTACTCTT 59.663 52.381 0.00 0.00 35.14 2.85
9851 10881 2.859032 GCTACCCGCTCGATTACTCTTG 60.859 54.545 0.00 0.00 35.14 3.02
9852 10882 0.179108 ACCCGCTCGATTACTCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
9853 10883 0.876342 CCCGCTCGATTACTCTTGCC 60.876 60.000 0.00 0.00 0.00 4.52
9854 10884 0.876342 CCGCTCGATTACTCTTGCCC 60.876 60.000 0.00 0.00 0.00 5.36
9855 10885 0.876342 CGCTCGATTACTCTTGCCCC 60.876 60.000 0.00 0.00 0.00 5.80
9856 10886 0.533085 GCTCGATTACTCTTGCCCCC 60.533 60.000 0.00 0.00 0.00 5.40
9857 10887 0.830648 CTCGATTACTCTTGCCCCCA 59.169 55.000 0.00 0.00 0.00 4.96
9858 10888 1.209504 CTCGATTACTCTTGCCCCCAA 59.790 52.381 0.00 0.00 0.00 4.12
9859 10889 1.065709 TCGATTACTCTTGCCCCCAAC 60.066 52.381 0.00 0.00 0.00 3.77
9860 10890 1.339631 CGATTACTCTTGCCCCCAACA 60.340 52.381 0.00 0.00 0.00 3.33
9861 10891 2.683742 CGATTACTCTTGCCCCCAACAT 60.684 50.000 0.00 0.00 0.00 2.71
9862 10892 3.433031 CGATTACTCTTGCCCCCAACATA 60.433 47.826 0.00 0.00 0.00 2.29
9863 10893 4.532834 GATTACTCTTGCCCCCAACATAA 58.467 43.478 0.00 0.00 0.00 1.90
9864 10894 2.514458 ACTCTTGCCCCCAACATAAG 57.486 50.000 0.00 0.00 0.00 1.73
9865 10895 1.710809 ACTCTTGCCCCCAACATAAGT 59.289 47.619 0.00 0.00 0.00 2.24
9866 10896 2.916934 ACTCTTGCCCCCAACATAAGTA 59.083 45.455 0.00 0.00 0.00 2.24
9867 10897 3.054361 ACTCTTGCCCCCAACATAAGTAG 60.054 47.826 0.00 0.00 0.00 2.57
9868 10898 2.024414 CTTGCCCCCAACATAAGTAGC 58.976 52.381 0.00 0.00 0.00 3.58
9869 10899 0.995803 TGCCCCCAACATAAGTAGCA 59.004 50.000 0.00 0.00 0.00 3.49
9870 10900 1.568597 TGCCCCCAACATAAGTAGCAT 59.431 47.619 0.00 0.00 0.00 3.79
9871 10901 2.024464 TGCCCCCAACATAAGTAGCATT 60.024 45.455 0.00 0.00 0.00 3.56
9872 10902 3.031013 GCCCCCAACATAAGTAGCATTT 58.969 45.455 0.00 0.00 0.00 2.32
9873 10903 3.181476 GCCCCCAACATAAGTAGCATTTG 60.181 47.826 0.00 0.00 0.00 2.32
9874 10904 3.181476 CCCCCAACATAAGTAGCATTTGC 60.181 47.826 0.00 0.00 42.49 3.68
9889 10919 5.077134 GCATTTGCTCTGGGTTTTTATCT 57.923 39.130 0.00 0.00 38.21 1.98
9899 10929 7.362920 GCTCTGGGTTTTTATCTGCAAAATAGA 60.363 37.037 0.00 0.00 0.00 1.98
9933 10963 8.475639 ACGATCCAATTACACATTAGTCTTACT 58.524 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.670674 GGCTGATGAACAACGGACGTA 60.671 52.381 0.00 0.00 0.00 3.57
40 41 0.949105 GGCTGATGAACAACGGACGT 60.949 55.000 0.00 0.00 0.00 4.34
41 42 1.787847 GGCTGATGAACAACGGACG 59.212 57.895 0.00 0.00 0.00 4.79
42 43 0.949105 ACGGCTGATGAACAACGGAC 60.949 55.000 0.00 0.00 34.69 4.79
43 44 0.604073 TACGGCTGATGAACAACGGA 59.396 50.000 0.00 0.00 34.69 4.69
44 45 0.719465 GTACGGCTGATGAACAACGG 59.281 55.000 0.00 0.00 34.69 4.44
56 57 1.553248 TGCTGGTAAATCTGTACGGCT 59.447 47.619 0.00 0.00 0.00 5.52
57 58 2.018542 TGCTGGTAAATCTGTACGGC 57.981 50.000 0.00 0.00 0.00 5.68
58 59 4.945246 AGTATGCTGGTAAATCTGTACGG 58.055 43.478 0.00 0.00 0.00 4.02
205 307 2.515991 ACCCAACCACGTGCACAG 60.516 61.111 18.64 12.16 0.00 3.66
241 343 1.077930 TACTCCCTCCGGTCAGTCG 60.078 63.158 0.00 0.00 0.00 4.18
247 349 2.769209 TCTAGTAGTACTCCCTCCGGT 58.231 52.381 5.96 0.00 0.00 5.28
248 350 3.853355 TTCTAGTAGTACTCCCTCCGG 57.147 52.381 5.96 0.00 0.00 5.14
249 351 5.033589 TCTTTCTAGTAGTACTCCCTCCG 57.966 47.826 5.96 0.00 0.00 4.63
250 352 6.543465 GTCTTCTTTCTAGTAGTACTCCCTCC 59.457 46.154 5.96 0.00 0.00 4.30
251 353 7.281549 CAGTCTTCTTTCTAGTAGTACTCCCTC 59.718 44.444 5.96 0.00 0.00 4.30
252 354 7.037442 TCAGTCTTCTTTCTAGTAGTACTCCCT 60.037 40.741 5.96 0.00 0.00 4.20
253 355 7.111466 TCAGTCTTCTTTCTAGTAGTACTCCC 58.889 42.308 5.96 0.00 0.00 4.30
254 356 8.564509 TTCAGTCTTCTTTCTAGTAGTACTCC 57.435 38.462 5.96 0.00 0.00 3.85
418 533 7.170658 GTGCTGAGAATATACAATTGGAGACTC 59.829 40.741 10.83 9.28 0.00 3.36
479 594 3.761897 CATGTCCACTACCCCTCAAAAA 58.238 45.455 0.00 0.00 0.00 1.94
480 595 2.554344 GCATGTCCACTACCCCTCAAAA 60.554 50.000 0.00 0.00 0.00 2.44
481 596 1.004277 GCATGTCCACTACCCCTCAAA 59.996 52.381 0.00 0.00 0.00 2.69
482 597 0.618458 GCATGTCCACTACCCCTCAA 59.382 55.000 0.00 0.00 0.00 3.02
483 598 0.546507 TGCATGTCCACTACCCCTCA 60.547 55.000 0.00 0.00 0.00 3.86
484 599 0.107654 GTGCATGTCCACTACCCCTC 60.108 60.000 0.00 0.00 33.02 4.30
485 600 0.840288 TGTGCATGTCCACTACCCCT 60.840 55.000 0.00 0.00 36.68 4.79
486 601 0.255890 ATGTGCATGTCCACTACCCC 59.744 55.000 0.00 0.00 36.68 4.95
487 602 1.065491 TCATGTGCATGTCCACTACCC 60.065 52.381 11.38 0.00 39.72 3.69
488 603 2.283298 CTCATGTGCATGTCCACTACC 58.717 52.381 11.38 0.00 39.72 3.18
514 630 4.525487 AGAAGCATTGCATTCCTTGAAGAA 59.475 37.500 11.91 0.00 0.00 2.52
551 667 3.511934 TGGAAGCTCTTCTAGTTCCTGTC 59.488 47.826 9.23 0.00 39.45 3.51
886 1417 7.016153 TGGTATATTTGTCAAGACCAGAGTT 57.984 36.000 6.62 0.00 33.18 3.01
1011 1542 6.174049 AGTAACTTTAGCTTGAGGTTGATCC 58.826 40.000 0.00 0.00 0.00 3.36
1014 1545 5.227908 CGAGTAACTTTAGCTTGAGGTTGA 58.772 41.667 0.00 0.00 0.00 3.18
1035 1566 0.878086 TCACAAACACGATGCTGCGA 60.878 50.000 5.82 0.00 34.83 5.10
1038 1569 1.069703 CCAGTCACAAACACGATGCTG 60.070 52.381 0.00 0.00 0.00 4.41
1059 1590 1.755179 TTGCATAAGGAGCAGCTTCC 58.245 50.000 0.00 0.00 43.75 3.46
1090 1621 2.226330 CGAACCACAAACATCTCCCAA 58.774 47.619 0.00 0.00 0.00 4.12
1143 1674 4.032960 TCTTGGCATTACAACCATCACT 57.967 40.909 0.00 0.00 35.42 3.41
1170 1701 7.068716 GCATAGTTTTTATCAGAGGACCCATTT 59.931 37.037 0.00 0.00 0.00 2.32
1326 1857 8.409358 ACAAGGATAAACAGTTGCTAGAATTT 57.591 30.769 0.00 0.00 0.00 1.82
1331 1862 8.015658 GTGTAAACAAGGATAAACAGTTGCTAG 58.984 37.037 0.00 0.00 0.00 3.42
1389 1920 8.462016 CAAGGGAAATAACAAGAAAGTATGGAG 58.538 37.037 0.00 0.00 0.00 3.86
2005 2536 4.944249 GCGGAAAGCCACTGTTTC 57.056 55.556 0.00 0.00 40.81 2.78
2235 2769 6.485830 TCTCCATATAAACTTCCTGGTCTG 57.514 41.667 0.00 0.00 0.00 3.51
2746 3288 6.893958 AAACATCAGATTAGCTACGAACTG 57.106 37.500 0.00 1.35 0.00 3.16
2849 3391 2.223852 GGGTGCGGTGTTGTAATTTTGT 60.224 45.455 0.00 0.00 0.00 2.83
3335 3877 4.096231 TCCAAACATGCTGAACCATATTCG 59.904 41.667 0.00 0.00 0.00 3.34
3360 3902 3.964031 TCAAATTGCCCCAAACAAGTAGT 59.036 39.130 0.00 0.00 0.00 2.73
3381 3923 3.539604 AGCAGCTACAATTCACCATCTC 58.460 45.455 0.00 0.00 0.00 2.75
3416 3958 9.864034 CATCGATACTTGTACAAAATAATCCAC 57.136 33.333 10.03 0.00 0.00 4.02
3536 4079 7.218228 TGATGTCAGCAACAAAGTTGATTAT 57.782 32.000 13.58 2.33 42.37 1.28
3669 4212 5.468072 GCCATGTACAGATAATGAGAAGTGG 59.532 44.000 0.33 0.15 0.00 4.00
3675 4218 6.932356 ACAAAGCCATGTACAGATAATGAG 57.068 37.500 0.33 0.00 0.00 2.90
3704 4247 4.155462 ACAGTATGACGATACGTGTGAACT 59.845 41.667 0.00 0.00 41.37 3.01
3782 4333 4.968719 TCTAAAGCTCCATACCATTCAGGA 59.031 41.667 0.00 0.00 41.22 3.86
4167 4719 7.681939 ACCGAAAGAGCAAACTGAATTAATA 57.318 32.000 0.00 0.00 0.00 0.98
4335 5057 7.394099 GCAAACTAGCAAAGAAAAAGAAAGTG 58.606 34.615 0.00 0.00 0.00 3.16
4361 5083 5.350504 AGTTAGTGAGAACATCATGGGAG 57.649 43.478 0.00 0.00 40.92 4.30
4443 5165 2.645797 CCTCCCTTACAGGTAAACCCAA 59.354 50.000 0.00 0.00 36.42 4.12
4732 5523 8.230486 GTCAGTGCTACACATATATTTATTGCC 58.770 37.037 0.00 0.00 36.74 4.52
4782 5573 7.067129 TGTTAGATCACATAGACTACAGGACAC 59.933 40.741 0.00 0.00 0.00 3.67
4931 5729 5.745312 TTCTCTTAGTCTTCAGCCAATGA 57.255 39.130 0.00 0.00 35.62 2.57
4954 5752 0.780090 AAAATCACCCTGGGTCCCCT 60.780 55.000 17.46 0.00 31.02 4.79
4981 5779 3.197766 CCTTACTGGATCTGTTGGCTACA 59.802 47.826 1.11 1.11 38.35 2.74
4982 5780 3.451178 TCCTTACTGGATCTGTTGGCTAC 59.549 47.826 0.00 0.00 40.56 3.58
4983 5781 3.719871 TCCTTACTGGATCTGTTGGCTA 58.280 45.455 0.00 0.00 40.56 3.93
4984 5782 2.551270 TCCTTACTGGATCTGTTGGCT 58.449 47.619 0.00 0.00 40.56 4.75
4985 5783 3.274288 CTTCCTTACTGGATCTGTTGGC 58.726 50.000 0.00 0.00 45.68 4.52
4986 5784 3.054802 AGCTTCCTTACTGGATCTGTTGG 60.055 47.826 0.00 0.00 45.68 3.77
4987 5785 4.213564 AGCTTCCTTACTGGATCTGTTG 57.786 45.455 0.00 0.00 45.68 3.33
4988 5786 4.141824 GCTAGCTTCCTTACTGGATCTGTT 60.142 45.833 7.70 0.00 45.68 3.16
4989 5787 3.386402 GCTAGCTTCCTTACTGGATCTGT 59.614 47.826 7.70 0.00 45.68 3.41
4990 5788 3.244044 GGCTAGCTTCCTTACTGGATCTG 60.244 52.174 15.72 0.00 45.68 2.90
5203 6001 1.039856 ACGCCCTTTCTGTTTGCATT 58.960 45.000 0.00 0.00 0.00 3.56
5204 6002 1.812571 CTACGCCCTTTCTGTTTGCAT 59.187 47.619 0.00 0.00 0.00 3.96
5205 6003 1.234821 CTACGCCCTTTCTGTTTGCA 58.765 50.000 0.00 0.00 0.00 4.08
5206 6004 0.521735 CCTACGCCCTTTCTGTTTGC 59.478 55.000 0.00 0.00 0.00 3.68
5207 6005 0.521735 GCCTACGCCCTTTCTGTTTG 59.478 55.000 0.00 0.00 0.00 2.93
5208 6006 0.109723 TGCCTACGCCCTTTCTGTTT 59.890 50.000 0.00 0.00 0.00 2.83
5209 6007 0.328258 ATGCCTACGCCCTTTCTGTT 59.672 50.000 0.00 0.00 0.00 3.16
5217 6015 1.388547 TGATCAAAATGCCTACGCCC 58.611 50.000 0.00 0.00 0.00 6.13
5229 6027 8.469200 CCATAATTAAGGCTCTTGTTGATCAAA 58.531 33.333 10.35 0.00 35.48 2.69
5250 6048 4.338012 TCTTGACGTCTACCACTCCATAA 58.662 43.478 17.92 0.00 0.00 1.90
5307 6105 3.782656 TTGAGAACTAAGTCCCCAACC 57.217 47.619 0.00 0.00 0.00 3.77
5395 6193 3.846588 ACACTCCTAACCATGTCTTCCAT 59.153 43.478 0.00 0.00 0.00 3.41
5756 6564 2.322355 ATCCTGCTGGACAAGAATCG 57.678 50.000 15.36 0.00 46.51 3.34
5762 6570 0.613260 ACGCTTATCCTGCTGGACAA 59.387 50.000 15.36 8.96 46.51 3.18
5795 6603 2.507484 TGAGCTTCCACCACTTCATTG 58.493 47.619 0.00 0.00 0.00 2.82
5883 6692 1.018752 TCATCCACACATTGTCCGCG 61.019 55.000 0.00 0.00 0.00 6.46
5959 6768 6.007703 AGGTATCCTTATCTTCTCTTCTCCG 58.992 44.000 0.00 0.00 0.00 4.63
6050 6859 1.555075 TGTTGACTGCACTCCTATCCC 59.445 52.381 0.00 0.00 0.00 3.85
6148 6958 0.600782 TTCGTGCCTAACCGTTGGTC 60.601 55.000 0.00 0.00 33.12 4.02
6184 6994 4.838423 TCGGATCTTGGCCATCTTATAGAA 59.162 41.667 6.09 0.00 0.00 2.10
6210 7020 2.897969 GGCCAATATCCTCGTCTTCCTA 59.102 50.000 0.00 0.00 0.00 2.94
6266 7079 0.966920 TCTCCTCGTCCTTCACCAAC 59.033 55.000 0.00 0.00 0.00 3.77
6340 7153 4.159879 AGTCGTCCAGTTTAATGGTAGGAG 59.840 45.833 0.00 0.00 41.43 3.69
6370 7183 2.358898 ACAAAACACATGCTGGTCTCAC 59.641 45.455 0.00 0.00 0.00 3.51
6384 7197 1.336440 CTGGATTCGCCACACAAAACA 59.664 47.619 0.00 0.00 43.33 2.83
6393 7206 1.191489 TCAGACACCTGGATTCGCCA 61.191 55.000 0.00 0.00 46.96 5.69
6406 7219 0.178921 AGCCTCCTTGACCTCAGACA 60.179 55.000 0.00 0.00 0.00 3.41
6496 7309 3.702792 AGCCATACTATCGCTATGTCCT 58.297 45.455 0.00 0.00 0.00 3.85
6530 7343 3.057019 GTTTGCCCGAAAAATGAGGTTC 58.943 45.455 0.00 0.00 0.00 3.62
6597 7410 2.821969 CTCTGACATCCCCCTTGTTTTG 59.178 50.000 0.00 0.00 0.00 2.44
6746 7562 3.008266 CCAAGAAAATGGCTTCCATGGTT 59.992 43.478 12.58 0.00 44.40 3.67
6841 7657 5.185249 ACATTCCGCGGTATCTTATCATAGT 59.815 40.000 27.15 8.84 0.00 2.12
6972 7788 4.672587 TCTTAATCGGGAAGTCATCAGG 57.327 45.455 0.00 0.00 0.00 3.86
7022 7838 4.735369 TCACCAAGGCAAAAAGATAAGGA 58.265 39.130 0.00 0.00 0.00 3.36
7178 7995 7.087895 AGTTCTACTAAGCCTAAACCCTTTT 57.912 36.000 0.00 0.00 0.00 2.27
7229 8048 6.183361 CCTCCTCCTCACACATAGTAGTACTA 60.183 46.154 12.38 12.38 34.82 1.82
7240 8059 1.267121 GCTAACCTCCTCCTCACACA 58.733 55.000 0.00 0.00 0.00 3.72
7274 8096 0.492276 AGGTGTCCTTCTGGGGTACT 59.508 55.000 0.00 0.00 35.33 2.73
7363 8185 2.577059 GCCACTTCATCCGTCCGA 59.423 61.111 0.00 0.00 0.00 4.55
7368 8190 2.745884 TTGGCGCCACTTCATCCG 60.746 61.111 32.95 0.00 0.00 4.18
7414 8236 1.069978 TGCCTTTTAGCTTTTGTGGCC 59.930 47.619 0.00 0.00 38.23 5.36
7477 8299 2.623878 TTTAGTCGGCCAACACTCAA 57.376 45.000 2.24 0.00 0.00 3.02
7500 8326 5.060506 CCACACCTAACTGTTAACATGTCA 58.939 41.667 9.13 0.00 0.00 3.58
7592 8419 3.451178 GTGCTACCCCAACTCTTATCTCA 59.549 47.826 0.00 0.00 0.00 3.27
7598 8425 1.145571 TTGGTGCTACCCCAACTCTT 58.854 50.000 3.33 0.00 37.50 2.85
7706 8533 3.006430 TCTTGACATTCTCCGCACACTTA 59.994 43.478 0.00 0.00 0.00 2.24
7710 8537 1.618343 TCTCTTGACATTCTCCGCACA 59.382 47.619 0.00 0.00 0.00 4.57
7825 8652 2.025981 ACATGGATAGCAAGCTTCCACA 60.026 45.455 20.41 8.68 42.09 4.17
7861 8688 4.494091 ACCCATAAGATCTTGTGACCAG 57.506 45.455 28.07 17.34 34.19 4.00
8447 9284 4.252971 AGTTAGCGAAACTTGAGCAGTA 57.747 40.909 2.06 0.00 46.61 2.74
8521 9360 8.438513 CAGAACAGTAACAGTTAATCATCACAG 58.561 37.037 0.00 0.00 0.00 3.66
8633 9472 1.842562 ACCATGCTACAGCCAAGATCT 59.157 47.619 0.00 0.00 41.18 2.75
8748 9684 0.690762 ACAACCCGGCATTGTCTAGT 59.309 50.000 14.71 0.00 35.32 2.57
8750 9686 1.612199 GGAACAACCCGGCATTGTCTA 60.612 52.381 19.24 0.00 39.36 2.59
8751 9687 0.893727 GGAACAACCCGGCATTGTCT 60.894 55.000 19.24 11.50 39.36 3.41
8752 9688 1.175983 TGGAACAACCCGGCATTGTC 61.176 55.000 19.24 13.47 39.36 3.18
8753 9689 1.152652 TGGAACAACCCGGCATTGT 60.153 52.632 14.71 14.71 42.07 2.71
8928 9864 3.948719 TGGTCCACGAAGGCCCAC 61.949 66.667 0.00 0.00 41.50 4.61
8980 9916 1.707632 CTCAAGGAGACTCGCACTTG 58.292 55.000 11.62 11.62 42.68 3.16
8984 9920 0.610509 AGAGCTCAAGGAGACTCGCA 60.611 55.000 17.77 0.00 42.68 5.10
9012 9948 1.227380 CCGCGGAAGGATGAAGAGG 60.227 63.158 24.07 0.00 0.00 3.69
9013 9949 1.884926 GCCGCGGAAGGATGAAGAG 60.885 63.158 33.48 0.00 0.00 2.85
9016 9952 4.483243 GGGCCGCGGAAGGATGAA 62.483 66.667 33.48 0.00 0.00 2.57
9097 10038 2.356553 CTCGAACCGGCGAACCAA 60.357 61.111 9.30 0.00 40.13 3.67
9116 10057 1.091771 GCAGCACAGCCGTCATATGT 61.092 55.000 1.90 0.00 0.00 2.29
9117 10058 0.812811 AGCAGCACAGCCGTCATATG 60.813 55.000 0.00 0.00 34.23 1.78
9119 10060 1.448365 CAGCAGCACAGCCGTCATA 60.448 57.895 0.00 0.00 34.23 2.15
9161 10102 2.841215 TCCCCAAAACTGTAACTGTCG 58.159 47.619 0.00 0.00 0.00 4.35
9395 10340 3.923273 AGGAAACCCCCTCTTTTGATT 57.077 42.857 0.00 0.00 34.66 2.57
9412 10374 4.632688 GGTTTCGTTAATGAAATCGGAGGA 59.367 41.667 22.33 0.00 39.80 3.71
9417 10379 5.037015 TGGTGGTTTCGTTAATGAAATCG 57.963 39.130 22.33 0.58 40.97 3.34
9530 10492 6.468956 CGTTTGTGGATTATGTTCAGTTATGC 59.531 38.462 0.00 0.00 0.00 3.14
9537 10499 4.457603 CCCTTCGTTTGTGGATTATGTTCA 59.542 41.667 0.00 0.00 0.00 3.18
9569 10531 7.038302 AGGATCTGGTTCTTATGTTTACTGTCA 60.038 37.037 0.00 0.00 0.00 3.58
9578 10540 8.793592 GTTTGTTTTAGGATCTGGTTCTTATGT 58.206 33.333 0.00 0.00 0.00 2.29
9579 10541 7.962918 CGTTTGTTTTAGGATCTGGTTCTTATG 59.037 37.037 0.00 0.00 0.00 1.90
9580 10542 7.361799 GCGTTTGTTTTAGGATCTGGTTCTTAT 60.362 37.037 0.00 0.00 0.00 1.73
9581 10543 6.072893 GCGTTTGTTTTAGGATCTGGTTCTTA 60.073 38.462 0.00 0.00 0.00 2.10
9582 10544 5.278315 GCGTTTGTTTTAGGATCTGGTTCTT 60.278 40.000 0.00 0.00 0.00 2.52
9583 10545 4.215613 GCGTTTGTTTTAGGATCTGGTTCT 59.784 41.667 0.00 0.00 0.00 3.01
9584 10546 4.023536 TGCGTTTGTTTTAGGATCTGGTTC 60.024 41.667 0.00 0.00 0.00 3.62
9585 10547 3.886505 TGCGTTTGTTTTAGGATCTGGTT 59.113 39.130 0.00 0.00 0.00 3.67
9586 10548 3.482436 TGCGTTTGTTTTAGGATCTGGT 58.518 40.909 0.00 0.00 0.00 4.00
9587 10549 3.670627 GCTGCGTTTGTTTTAGGATCTGG 60.671 47.826 0.00 0.00 0.00 3.86
9588 10550 3.058293 TGCTGCGTTTGTTTTAGGATCTG 60.058 43.478 0.00 0.00 0.00 2.90
9589 10551 3.146066 TGCTGCGTTTGTTTTAGGATCT 58.854 40.909 0.00 0.00 0.00 2.75
9590 10552 3.188460 TCTGCTGCGTTTGTTTTAGGATC 59.812 43.478 0.00 0.00 0.00 3.36
9591 10553 3.058224 GTCTGCTGCGTTTGTTTTAGGAT 60.058 43.478 0.00 0.00 0.00 3.24
9592 10554 2.289547 GTCTGCTGCGTTTGTTTTAGGA 59.710 45.455 0.00 0.00 0.00 2.94
9593 10555 2.032799 TGTCTGCTGCGTTTGTTTTAGG 59.967 45.455 0.00 0.00 0.00 2.69
9594 10556 3.035942 GTGTCTGCTGCGTTTGTTTTAG 58.964 45.455 0.00 0.00 0.00 1.85
9595 10557 2.420372 TGTGTCTGCTGCGTTTGTTTTA 59.580 40.909 0.00 0.00 0.00 1.52
9596 10558 1.201181 TGTGTCTGCTGCGTTTGTTTT 59.799 42.857 0.00 0.00 0.00 2.43
9597 10559 0.808125 TGTGTCTGCTGCGTTTGTTT 59.192 45.000 0.00 0.00 0.00 2.83
9598 10560 0.098728 GTGTGTCTGCTGCGTTTGTT 59.901 50.000 0.00 0.00 0.00 2.83
9599 10561 1.024046 TGTGTGTCTGCTGCGTTTGT 61.024 50.000 0.00 0.00 0.00 2.83
9600 10562 0.098552 TTGTGTGTCTGCTGCGTTTG 59.901 50.000 0.00 0.00 0.00 2.93
9604 10566 1.369689 GCTTTGTGTGTCTGCTGCG 60.370 57.895 0.00 0.00 0.00 5.18
9626 10588 0.528017 CACTAGCCTCTTCAGCGACA 59.472 55.000 0.00 0.00 34.64 4.35
9641 10603 2.263895 AGATAACCAGGGGTGCACTA 57.736 50.000 17.98 0.00 35.34 2.74
9644 10606 2.116238 GACTAGATAACCAGGGGTGCA 58.884 52.381 0.00 0.00 35.34 4.57
9645 10607 2.365941 GAGACTAGATAACCAGGGGTGC 59.634 54.545 0.00 0.00 35.34 5.01
9646 10608 3.639094 CAGAGACTAGATAACCAGGGGTG 59.361 52.174 0.00 0.00 35.34 4.61
9649 10611 3.068873 GTGCAGAGACTAGATAACCAGGG 59.931 52.174 0.00 0.00 0.00 4.45
9650 10612 3.068873 GGTGCAGAGACTAGATAACCAGG 59.931 52.174 0.00 0.00 0.00 4.45
9651 10613 3.068873 GGGTGCAGAGACTAGATAACCAG 59.931 52.174 0.00 0.00 0.00 4.00
9687 10717 3.801114 AACTGAAGGAAAAACAGTGGC 57.199 42.857 0.00 0.00 42.81 5.01
9688 10718 6.884280 AGATAACTGAAGGAAAAACAGTGG 57.116 37.500 0.00 0.00 42.81 4.00
9689 10719 8.608844 ACTAGATAACTGAAGGAAAAACAGTG 57.391 34.615 0.00 0.00 42.81 3.66
9690 10720 8.652290 AGACTAGATAACTGAAGGAAAAACAGT 58.348 33.333 0.00 0.00 45.02 3.55
9691 10721 9.145865 GAGACTAGATAACTGAAGGAAAAACAG 57.854 37.037 0.00 0.00 37.62 3.16
9692 10722 8.871125 AGAGACTAGATAACTGAAGGAAAAACA 58.129 33.333 0.00 0.00 0.00 2.83
9693 10723 9.145865 CAGAGACTAGATAACTGAAGGAAAAAC 57.854 37.037 0.00 0.00 0.00 2.43
9694 10724 8.871125 ACAGAGACTAGATAACTGAAGGAAAAA 58.129 33.333 0.00 0.00 33.53 1.94
9695 10725 8.423906 ACAGAGACTAGATAACTGAAGGAAAA 57.576 34.615 0.00 0.00 33.53 2.29
9696 10726 8.958506 GTACAGAGACTAGATAACTGAAGGAAA 58.041 37.037 0.00 0.00 33.53 3.13
9697 10727 7.556996 GGTACAGAGACTAGATAACTGAAGGAA 59.443 40.741 0.00 0.00 33.53 3.36
9698 10728 7.055378 GGTACAGAGACTAGATAACTGAAGGA 58.945 42.308 0.00 0.00 33.53 3.36
9699 10729 6.263617 GGGTACAGAGACTAGATAACTGAAGG 59.736 46.154 0.00 0.00 33.53 3.46
9700 10730 6.263617 GGGGTACAGAGACTAGATAACTGAAG 59.736 46.154 0.00 0.00 33.53 3.02
9701 10731 6.068971 AGGGGTACAGAGACTAGATAACTGAA 60.069 42.308 0.00 0.00 33.53 3.02
9702 10732 5.432390 AGGGGTACAGAGACTAGATAACTGA 59.568 44.000 0.00 0.00 33.53 3.41
9703 10733 5.533154 CAGGGGTACAGAGACTAGATAACTG 59.467 48.000 0.00 3.31 35.14 3.16
9704 10734 5.399267 CCAGGGGTACAGAGACTAGATAACT 60.399 48.000 0.00 0.00 0.00 2.24
9705 10735 4.828387 CCAGGGGTACAGAGACTAGATAAC 59.172 50.000 0.00 0.00 0.00 1.89
9706 10736 4.481280 ACCAGGGGTACAGAGACTAGATAA 59.519 45.833 0.00 0.00 32.11 1.75
9707 10737 4.052922 ACCAGGGGTACAGAGACTAGATA 58.947 47.826 0.00 0.00 32.11 1.98
9708 10738 2.860041 ACCAGGGGTACAGAGACTAGAT 59.140 50.000 0.00 0.00 32.11 1.98
9709 10739 2.241685 GACCAGGGGTACAGAGACTAGA 59.758 54.545 0.00 0.00 35.25 2.43
9710 10740 2.242708 AGACCAGGGGTACAGAGACTAG 59.757 54.545 0.00 0.00 35.25 2.57
9711 10741 2.241685 GAGACCAGGGGTACAGAGACTA 59.758 54.545 0.00 0.00 35.25 2.59
9712 10742 1.006162 GAGACCAGGGGTACAGAGACT 59.994 57.143 0.00 0.00 35.25 3.24
9713 10743 1.476477 GAGACCAGGGGTACAGAGAC 58.524 60.000 0.00 0.00 35.25 3.36
9714 10744 0.335361 GGAGACCAGGGGTACAGAGA 59.665 60.000 0.00 0.00 35.25 3.10
9715 10745 0.041238 TGGAGACCAGGGGTACAGAG 59.959 60.000 0.00 0.00 35.25 3.35
9716 10746 0.252103 GTGGAGACCAGGGGTACAGA 60.252 60.000 0.00 0.00 35.25 3.41
9717 10747 0.544357 TGTGGAGACCAGGGGTACAG 60.544 60.000 0.00 0.00 35.25 2.74
9718 10748 0.834687 GTGTGGAGACCAGGGGTACA 60.835 60.000 0.00 0.00 35.25 2.90
9719 10749 1.551019 GGTGTGGAGACCAGGGGTAC 61.551 65.000 0.00 0.00 35.25 3.34
9720 10750 1.229400 GGTGTGGAGACCAGGGGTA 60.229 63.158 0.00 0.00 35.25 3.69
9721 10751 2.529389 GGTGTGGAGACCAGGGGT 60.529 66.667 0.00 0.00 39.44 4.95
9722 10752 2.203998 AGGTGTGGAGACCAGGGG 60.204 66.667 0.00 0.00 38.63 4.79
9723 10753 1.843376 ACAGGTGTGGAGACCAGGG 60.843 63.158 0.00 0.00 38.63 4.45
9724 10754 1.121407 TCACAGGTGTGGAGACCAGG 61.121 60.000 10.18 0.00 45.65 4.45
9725 10755 0.034059 GTCACAGGTGTGGAGACCAG 59.966 60.000 10.18 0.00 45.65 4.00
9726 10756 1.744320 CGTCACAGGTGTGGAGACCA 61.744 60.000 10.18 0.00 45.65 4.02
9727 10757 1.006102 CGTCACAGGTGTGGAGACC 60.006 63.158 10.18 0.00 45.65 3.85
9728 10758 1.664965 GCGTCACAGGTGTGGAGAC 60.665 63.158 10.18 0.87 45.65 3.36
9729 10759 1.806461 GAGCGTCACAGGTGTGGAGA 61.806 60.000 10.18 0.00 45.65 3.71
9730 10760 1.373497 GAGCGTCACAGGTGTGGAG 60.373 63.158 10.18 5.94 45.65 3.86
9731 10761 2.734591 GAGCGTCACAGGTGTGGA 59.265 61.111 10.18 0.00 45.65 4.02
9732 10762 2.492449 ATCGAGCGTCACAGGTGTGG 62.492 60.000 10.18 0.00 45.65 4.17
9733 10763 0.170339 TATCGAGCGTCACAGGTGTG 59.830 55.000 3.56 3.56 46.91 3.82
9734 10764 1.103803 ATATCGAGCGTCACAGGTGT 58.896 50.000 0.00 0.00 0.00 4.16
9735 10765 3.560902 ATATATCGAGCGTCACAGGTG 57.439 47.619 0.00 0.00 0.00 4.00
9736 10766 4.037565 TGAAATATATCGAGCGTCACAGGT 59.962 41.667 0.00 0.00 0.00 4.00
9741 10771 4.444388 GCAAGTGAAATATATCGAGCGTCA 59.556 41.667 0.00 0.00 0.00 4.35
9769 10799 0.876342 GGGGCAAGAGTAATCGAGCG 60.876 60.000 0.00 0.00 0.00 5.03
9773 10803 1.339631 TGTTGGGGGCAAGAGTAATCG 60.340 52.381 0.00 0.00 0.00 3.34
9779 10809 0.038744 ACTGATGTTGGGGGCAAGAG 59.961 55.000 0.00 0.00 0.00 2.85
9802 10832 7.015584 AGTGAAAGATAAAAACCCAGAGCAAAT 59.984 33.333 0.00 0.00 0.00 2.32
9803 10833 6.323739 AGTGAAAGATAAAAACCCAGAGCAAA 59.676 34.615 0.00 0.00 0.00 3.68
9806 10836 5.966742 AGTGAAAGATAAAAACCCAGAGC 57.033 39.130 0.00 0.00 0.00 4.09
9809 10839 6.089249 AGCAAGTGAAAGATAAAAACCCAG 57.911 37.500 0.00 0.00 0.00 4.45
9814 10844 6.249035 CGGGTAGCAAGTGAAAGATAAAAA 57.751 37.500 0.00 0.00 0.00 1.94
9815 10845 5.873179 CGGGTAGCAAGTGAAAGATAAAA 57.127 39.130 0.00 0.00 0.00 1.52
9831 10861 2.859032 GCAAGAGTAATCGAGCGGGTAG 60.859 54.545 0.00 0.00 0.00 3.18
9832 10862 1.066605 GCAAGAGTAATCGAGCGGGTA 59.933 52.381 0.00 0.00 0.00 3.69
9833 10863 0.179108 GCAAGAGTAATCGAGCGGGT 60.179 55.000 0.00 0.00 0.00 5.28
9834 10864 0.876342 GGCAAGAGTAATCGAGCGGG 60.876 60.000 0.00 0.00 0.00 6.13
9835 10865 0.876342 GGGCAAGAGTAATCGAGCGG 60.876 60.000 0.00 0.00 0.00 5.52
9836 10866 0.876342 GGGGCAAGAGTAATCGAGCG 60.876 60.000 0.00 0.00 0.00 5.03
9837 10867 0.533085 GGGGGCAAGAGTAATCGAGC 60.533 60.000 0.00 1.99 0.00 5.03
9838 10868 0.830648 TGGGGGCAAGAGTAATCGAG 59.169 55.000 0.00 0.00 0.00 4.04
9839 10869 1.065709 GTTGGGGGCAAGAGTAATCGA 60.066 52.381 0.00 0.00 0.00 3.59
9840 10870 1.339631 TGTTGGGGGCAAGAGTAATCG 60.340 52.381 0.00 0.00 0.00 3.34
9841 10871 2.507407 TGTTGGGGGCAAGAGTAATC 57.493 50.000 0.00 0.00 0.00 1.75
9842 10872 4.017499 ACTTATGTTGGGGGCAAGAGTAAT 60.017 41.667 0.00 0.00 0.00 1.89
9843 10873 3.332485 ACTTATGTTGGGGGCAAGAGTAA 59.668 43.478 0.00 0.00 0.00 2.24
9844 10874 2.916934 ACTTATGTTGGGGGCAAGAGTA 59.083 45.455 0.00 0.00 0.00 2.59
9845 10875 1.710809 ACTTATGTTGGGGGCAAGAGT 59.289 47.619 0.00 0.00 0.00 3.24
9846 10876 2.514458 ACTTATGTTGGGGGCAAGAG 57.486 50.000 0.00 0.00 0.00 2.85
9847 10877 2.356741 GCTACTTATGTTGGGGGCAAGA 60.357 50.000 0.00 0.00 0.00 3.02
9848 10878 2.024414 GCTACTTATGTTGGGGGCAAG 58.976 52.381 0.00 0.00 0.00 4.01
9849 10879 1.356059 TGCTACTTATGTTGGGGGCAA 59.644 47.619 0.00 0.00 0.00 4.52
9850 10880 0.995803 TGCTACTTATGTTGGGGGCA 59.004 50.000 0.00 0.00 0.00 5.36
9851 10881 2.364972 ATGCTACTTATGTTGGGGGC 57.635 50.000 0.00 0.00 0.00 5.80
9852 10882 3.181476 GCAAATGCTACTTATGTTGGGGG 60.181 47.826 0.00 0.00 38.21 5.40
9853 10883 4.045636 GCAAATGCTACTTATGTTGGGG 57.954 45.455 0.00 0.00 38.21 4.96
9867 10897 4.866486 CAGATAAAAACCCAGAGCAAATGC 59.134 41.667 0.00 0.00 42.49 3.56
9868 10898 4.866486 GCAGATAAAAACCCAGAGCAAATG 59.134 41.667 0.00 0.00 0.00 2.32
9869 10899 4.527816 TGCAGATAAAAACCCAGAGCAAAT 59.472 37.500 0.00 0.00 0.00 2.32
9870 10900 3.894427 TGCAGATAAAAACCCAGAGCAAA 59.106 39.130 0.00 0.00 0.00 3.68
9871 10901 3.495331 TGCAGATAAAAACCCAGAGCAA 58.505 40.909 0.00 0.00 0.00 3.91
9872 10902 3.153369 TGCAGATAAAAACCCAGAGCA 57.847 42.857 0.00 0.00 0.00 4.26
9873 10903 4.519540 TTTGCAGATAAAAACCCAGAGC 57.480 40.909 0.00 0.00 0.00 4.09
9874 10904 7.970614 GTCTATTTTGCAGATAAAAACCCAGAG 59.029 37.037 0.00 0.00 33.67 3.35
9875 10905 7.093945 GGTCTATTTTGCAGATAAAAACCCAGA 60.094 37.037 0.00 0.00 33.67 3.86
9876 10906 7.035612 GGTCTATTTTGCAGATAAAAACCCAG 58.964 38.462 0.00 0.00 33.67 4.45
9877 10907 6.495181 TGGTCTATTTTGCAGATAAAAACCCA 59.505 34.615 8.35 0.00 33.67 4.51
9878 10908 6.930731 TGGTCTATTTTGCAGATAAAAACCC 58.069 36.000 8.35 0.00 33.67 4.11
9879 10909 9.087424 GATTGGTCTATTTTGCAGATAAAAACC 57.913 33.333 0.00 0.00 33.67 3.27
9880 10910 9.638239 TGATTGGTCTATTTTGCAGATAAAAAC 57.362 29.630 0.00 0.00 33.67 2.43
9889 10919 5.163663 GGATCGTTGATTGGTCTATTTTGCA 60.164 40.000 0.00 0.00 0.00 4.08
9899 10929 5.007034 TGTGTAATTGGATCGTTGATTGGT 58.993 37.500 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.