Multiple sequence alignment - TraesCS7B01G018300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G018300 chr7B 100.000 8835 0 0 1 8835 15309688 15300854 0.000000e+00 16316.0
1 TraesCS7B01G018300 chr7B 92.597 1513 81 9 2425 3923 15039624 15038129 0.000000e+00 2145.0
2 TraesCS7B01G018300 chr7B 88.491 1703 111 34 6574 8237 15022541 15020885 0.000000e+00 1980.0
3 TraesCS7B01G018300 chr7B 92.494 906 48 15 4657 5553 15032523 15031629 0.000000e+00 1279.0
4 TraesCS7B01G018300 chr7B 95.125 759 25 6 5826 6584 15029492 15028746 0.000000e+00 1186.0
5 TraesCS7B01G018300 chr7B 92.796 819 48 7 1 815 678100822 678100011 0.000000e+00 1175.0
6 TraesCS7B01G018300 chr7B 95.323 620 25 2 4027 4646 15038130 15037515 0.000000e+00 981.0
7 TraesCS7B01G018300 chr7B 85.631 856 52 29 7470 8285 15079754 15078930 0.000000e+00 833.0
8 TraesCS7B01G018300 chr7B 80.860 1139 129 33 5466 6561 217427548 217426456 0.000000e+00 813.0
9 TraesCS7B01G018300 chr7B 86.813 728 54 10 6750 7476 15100951 15100265 0.000000e+00 774.0
10 TraesCS7B01G018300 chr7B 88.007 567 29 15 8282 8835 15072795 15072255 1.250000e-177 634.0
11 TraesCS7B01G018300 chr7B 85.560 464 36 9 8375 8834 15289379 15288943 2.910000e-124 457.0
12 TraesCS7B01G018300 chr7B 81.399 586 55 19 7695 8242 15292479 15291910 6.340000e-116 429.0
13 TraesCS7B01G018300 chr7B 94.964 139 7 0 5546 5684 15031437 15031299 1.490000e-52 219.0
14 TraesCS7B01G018300 chr7B 92.000 150 5 4 8687 8835 15020843 15020700 4.180000e-48 204.0
15 TraesCS7B01G018300 chr7B 94.017 117 7 0 3921 4037 682034288 682034404 2.530000e-40 178.0
16 TraesCS7B01G018300 chr7B 93.220 118 8 0 3920 4037 682034397 682034280 3.280000e-39 174.0
17 TraesCS7B01G018300 chr7B 84.375 160 20 5 4589 4744 749477827 749477985 1.540000e-32 152.0
18 TraesCS7B01G018300 chr7B 84.211 114 18 0 2548 2661 15226062 15225949 2.610000e-20 111.0
19 TraesCS7B01G018300 chr7A 95.200 2125 80 17 4027 6142 77202171 77200060 0.000000e+00 3339.0
20 TraesCS7B01G018300 chr7A 93.178 1158 55 12 2767 3923 77203304 77202170 0.000000e+00 1679.0
21 TraesCS7B01G018300 chr7A 94.863 915 40 4 1803 2710 77204245 77203331 0.000000e+00 1423.0
22 TraesCS7B01G018300 chr7A 90.508 906 69 10 823 1721 77205139 77204244 0.000000e+00 1181.0
23 TraesCS7B01G018300 chr7A 94.746 571 22 5 6171 6734 77199280 77198711 0.000000e+00 881.0
24 TraesCS7B01G018300 chr7A 95.353 538 20 3 1803 2336 117151732 117152268 0.000000e+00 850.0
25 TraesCS7B01G018300 chr7A 86.645 614 39 14 7023 7617 77198707 77198118 2.690000e-179 640.0
26 TraesCS7B01G018300 chr7A 84.436 559 43 22 7629 8168 77198062 77197529 2.200000e-140 510.0
27 TraesCS7B01G018300 chr7A 90.508 295 26 2 1427 1721 665802254 665802546 1.080000e-103 388.0
28 TraesCS7B01G018300 chr7A 96.774 93 3 0 1717 1809 28862346 28862254 1.190000e-33 156.0
29 TraesCS7B01G018300 chr7A 96.774 93 3 0 1717 1809 28891294 28891202 1.190000e-33 156.0
30 TraesCS7B01G018300 chr7A 96.774 93 3 0 1717 1809 28932322 28932230 1.190000e-33 156.0
31 TraesCS7B01G018300 chr7A 96.774 93 3 0 1717 1809 28984813 28984721 1.190000e-33 156.0
32 TraesCS7B01G018300 chr7A 84.211 152 23 1 4588 4738 712101794 712101643 7.150000e-31 147.0
33 TraesCS7B01G018300 chr7D 94.447 2143 84 15 1803 3923 73107935 73110064 0.000000e+00 3265.0
34 TraesCS7B01G018300 chr7D 94.859 1809 58 17 4027 5823 73110063 73111848 0.000000e+00 2793.0
35 TraesCS7B01G018300 chr7D 91.089 909 60 15 823 1721 73107039 73107936 0.000000e+00 1210.0
36 TraesCS7B01G018300 chr7D 88.411 837 62 13 6785 7617 73113360 73114165 0.000000e+00 976.0
37 TraesCS7B01G018300 chr7D 94.331 635 25 4 6102 6725 73112724 73113358 0.000000e+00 963.0
38 TraesCS7B01G018300 chr7D 91.156 441 27 6 8222 8660 73114869 73115299 9.880000e-164 588.0
39 TraesCS7B01G018300 chr7D 91.786 280 13 5 7629 7898 73114224 73114503 1.800000e-101 381.0
40 TraesCS7B01G018300 chr7D 95.575 113 5 0 3920 4032 35557850 35557962 1.960000e-41 182.0
41 TraesCS7B01G018300 chr7D 97.938 97 2 0 6009 6105 73111849 73111945 1.530000e-37 169.0
42 TraesCS7B01G018300 chr7D 98.864 88 1 0 1717 1804 626199882 626199969 3.300000e-34 158.0
43 TraesCS7B01G018300 chr7D 95.833 96 1 1 8740 8835 73115351 73115443 1.540000e-32 152.0
44 TraesCS7B01G018300 chr7D 89.773 88 8 1 7209 7296 492211691 492211777 2.610000e-20 111.0
45 TraesCS7B01G018300 chr7D 89.773 88 7 2 7210 7296 534673742 534673828 2.610000e-20 111.0
46 TraesCS7B01G018300 chr7D 87.500 96 10 2 7200 7295 411219296 411219203 9.380000e-20 110.0
47 TraesCS7B01G018300 chr7D 100.000 34 0 0 6882 6915 347161222 347161255 7.410000e-06 63.9
48 TraesCS7B01G018300 chr7D 100.000 33 0 0 6883 6915 527993619 527993587 2.660000e-05 62.1
49 TraesCS7B01G018300 chr7D 100.000 33 0 0 6883 6915 576305097 576305129 2.660000e-05 62.1
50 TraesCS7B01G018300 chr5B 96.871 831 20 4 1 828 109899090 109899917 0.000000e+00 1386.0
51 TraesCS7B01G018300 chr5B 94.730 816 38 3 1 816 177128470 177127660 0.000000e+00 1264.0
52 TraesCS7B01G018300 chr5B 94.737 114 4 2 3922 4035 511610849 511610738 9.120000e-40 176.0
53 TraesCS7B01G018300 chr5B 90.805 87 6 2 7213 7298 301511689 301511604 2.020000e-21 115.0
54 TraesCS7B01G018300 chr5B 100.000 34 0 0 6882 6915 40763898 40763931 7.410000e-06 63.9
55 TraesCS7B01G018300 chr3B 95.098 816 36 3 1 814 82434171 82433358 0.000000e+00 1282.0
56 TraesCS7B01G018300 chr3B 94.356 815 38 6 1 814 14264811 14264004 0.000000e+00 1243.0
57 TraesCS7B01G018300 chr3B 92.683 820 50 6 1 815 407203832 407204646 0.000000e+00 1173.0
58 TraesCS7B01G018300 chr3B 86.784 227 28 2 4588 4813 39095108 39095333 1.470000e-62 252.0
59 TraesCS7B01G018300 chr3B 88.542 96 11 0 7204 7299 600979775 600979870 5.600000e-22 117.0
60 TraesCS7B01G018300 chr3B 95.000 40 1 1 1372 1411 262583755 262583717 2.660000e-05 62.1
61 TraesCS7B01G018300 chr3B 95.000 40 1 1 1372 1411 263256484 263256522 2.660000e-05 62.1
62 TraesCS7B01G018300 chr1B 92.457 822 50 8 1 817 615477038 615476224 0.000000e+00 1164.0
63 TraesCS7B01G018300 chr1B 92.543 818 49 8 1 814 618190925 618191734 0.000000e+00 1162.0
64 TraesCS7B01G018300 chr1B 97.196 107 3 0 3922 4028 626498569 626498463 1.960000e-41 182.0
65 TraesCS7B01G018300 chr1B 96.330 109 4 0 3921 4029 229263161 229263269 7.050000e-41 180.0
66 TraesCS7B01G018300 chr1B 93.103 87 4 2 7210 7295 200788893 200788978 9.310000e-25 126.0
67 TraesCS7B01G018300 chr1B 92.045 88 6 1 7209 7296 4036007 4036093 1.200000e-23 122.0
68 TraesCS7B01G018300 chr1B 92.771 83 6 0 7213 7295 108426768 108426850 4.330000e-23 121.0
69 TraesCS7B01G018300 chr1B 100.000 39 0 0 8571 8609 54136164 54136126 1.230000e-08 73.1
70 TraesCS7B01G018300 chr1B 100.000 39 0 0 8571 8609 54960894 54960856 1.230000e-08 73.1
71 TraesCS7B01G018300 chr1B 100.000 39 0 0 8571 8609 55004168 55004130 1.230000e-08 73.1
72 TraesCS7B01G018300 chr2B 92.552 819 48 8 1 815 90758942 90758133 0.000000e+00 1162.0
73 TraesCS7B01G018300 chr2B 96.774 93 3 0 1717 1809 788199743 788199835 1.190000e-33 156.0
74 TraesCS7B01G018300 chr2B 81.977 172 23 7 8562 8728 198760063 198759895 1.200000e-28 139.0
75 TraesCS7B01G018300 chr2B 88.406 69 8 0 3839 3907 514855347 514855279 5.680000e-12 84.2
76 TraesCS7B01G018300 chr2B 94.872 39 1 1 6877 6915 352706925 352706962 9.580000e-05 60.2
77 TraesCS7B01G018300 chr2B 97.222 36 0 1 6880 6915 439334995 439335029 9.580000e-05 60.2
78 TraesCS7B01G018300 chr6A 95.539 538 18 4 1803 2336 421292796 421292261 0.000000e+00 856.0
79 TraesCS7B01G018300 chr6A 91.065 291 24 2 1431 1721 421293083 421292795 8.320000e-105 392.0
80 TraesCS7B01G018300 chr6A 90.508 295 26 2 1427 1721 436834714 436835006 1.080000e-103 388.0
81 TraesCS7B01G018300 chr6A 83.030 330 44 8 6150 6471 273117926 273118251 1.120000e-73 289.0
82 TraesCS7B01G018300 chr6A 89.773 88 9 0 7209 7296 498578423 498578336 7.250000e-21 113.0
83 TraesCS7B01G018300 chr6A 90.588 85 6 2 7213 7296 66419522 66419439 2.610000e-20 111.0
84 TraesCS7B01G018300 chr6A 84.694 98 13 2 4588 4684 39004769 39004865 7.300000e-16 97.1
85 TraesCS7B01G018300 chr5A 95.539 538 19 3 1803 2336 409744034 409743498 0.000000e+00 856.0
86 TraesCS7B01G018300 chr5A 90.508 295 26 2 1427 1721 409744325 409744033 1.080000e-103 388.0
87 TraesCS7B01G018300 chr5A 81.250 384 37 15 6206 6555 501413819 501413437 2.430000e-70 278.0
88 TraesCS7B01G018300 chr5A 84.211 152 23 1 4588 4738 605038450 605038299 7.150000e-31 147.0
89 TraesCS7B01G018300 chr5A 92.857 84 4 2 7213 7295 573947963 573947881 4.330000e-23 121.0
90 TraesCS7B01G018300 chr2A 95.353 538 19 4 1803 2336 465074049 465073514 0.000000e+00 850.0
91 TraesCS7B01G018300 chr2A 95.353 538 20 3 1803 2336 518824275 518823739 0.000000e+00 850.0
92 TraesCS7B01G018300 chr2A 95.336 536 20 3 1803 2334 149629431 149628897 0.000000e+00 846.0
93 TraesCS7B01G018300 chr2A 95.167 538 21 3 1803 2336 30680631 30680095 0.000000e+00 845.0
94 TraesCS7B01G018300 chr2A 81.692 721 75 20 5864 6550 8157576 8156879 1.680000e-151 547.0
95 TraesCS7B01G018300 chr2A 91.293 379 30 3 1343 1721 31100376 31100001 1.700000e-141 514.0
96 TraesCS7B01G018300 chr2A 90.847 295 25 2 1427 1721 30680922 30680630 2.310000e-105 394.0
97 TraesCS7B01G018300 chr2A 89.062 64 7 0 3839 3902 550548887 550548950 7.350000e-11 80.5
98 TraesCS7B01G018300 chr2A 90.698 43 3 1 6873 6915 394798758 394798799 1.000000e-03 56.5
99 TraesCS7B01G018300 chr4D 82.490 1028 112 23 5466 6471 95865222 95866203 0.000000e+00 839.0
100 TraesCS7B01G018300 chr4D 76.837 449 60 17 6593 7036 95866381 95866790 6.950000e-51 213.0
101 TraesCS7B01G018300 chr4D 88.811 143 12 4 3888 4028 37513757 37513897 1.180000e-38 172.0
102 TraesCS7B01G018300 chr4D 83.660 153 22 3 4587 4738 394153595 394153445 3.330000e-29 141.0
103 TraesCS7B01G018300 chr4D 90.476 84 6 1 7213 7296 353463960 353464041 9.380000e-20 110.0
104 TraesCS7B01G018300 chr4D 71.961 510 95 36 4639 5135 301777264 301776790 1.210000e-18 106.0
105 TraesCS7B01G018300 chr4D 89.286 84 9 0 7213 7296 308054033 308054116 1.210000e-18 106.0
106 TraesCS7B01G018300 chr4D 93.151 73 3 2 7224 7295 492845950 492845879 1.210000e-18 106.0
107 TraesCS7B01G018300 chr4D 91.304 46 3 1 4580 4625 246522788 246522744 2.660000e-05 62.1
108 TraesCS7B01G018300 chr4D 100.000 32 0 0 6884 6915 308054117 308054086 9.580000e-05 60.2
109 TraesCS7B01G018300 chr4D 100.000 31 0 0 6885 6915 238301491 238301461 3.450000e-04 58.4
110 TraesCS7B01G018300 chr4D 100.000 31 0 0 6885 6915 278482080 278482110 3.450000e-04 58.4
111 TraesCS7B01G018300 chr4D 100.000 31 0 0 6885 6915 353464041 353464011 3.450000e-04 58.4
112 TraesCS7B01G018300 chr4D 97.059 34 1 0 6882 6915 478960585 478960618 3.450000e-04 58.4
113 TraesCS7B01G018300 chr2D 77.823 974 118 39 6122 7059 643704448 643705359 6.120000e-141 512.0
114 TraesCS7B01G018300 chr2D 82.500 160 21 6 4589 4744 560580829 560580673 5.560000e-27 134.0
115 TraesCS7B01G018300 chr2D 93.827 81 3 2 7217 7296 640404902 640404981 4.330000e-23 121.0
116 TraesCS7B01G018300 chr2D 92.857 42 1 2 6876 6915 13477841 13477800 9.580000e-05 60.2
117 TraesCS7B01G018300 chr3A 82.780 482 57 12 6005 6471 84092260 84092730 2.970000e-109 407.0
118 TraesCS7B01G018300 chr3A 90.847 295 24 3 1427 1721 201789036 201788745 8.320000e-105 392.0
119 TraesCS7B01G018300 chr3A 85.799 338 38 9 4882 5210 84091170 84091506 5.080000e-92 350.0
120 TraesCS7B01G018300 chr3A 85.207 338 40 9 4882 5210 84100480 84100816 1.100000e-88 339.0
121 TraesCS7B01G018300 chr3A 96.774 93 3 0 1717 1809 574288514 574288606 1.190000e-33 156.0
122 TraesCS7B01G018300 chr6D 82.831 332 45 8 6150 6473 216864081 216863754 4.040000e-73 287.0
123 TraesCS7B01G018300 chr6D 89.535 86 9 0 7213 7298 101714745 101714660 9.380000e-20 110.0
124 TraesCS7B01G018300 chr6D 94.872 39 0 1 6878 6916 101714657 101714693 9.580000e-05 60.2
125 TraesCS7B01G018300 chr6D 100.000 32 0 0 6884 6915 141971579 141971548 9.580000e-05 60.2
126 TraesCS7B01G018300 chr3D 90.426 188 16 2 4588 4774 22096351 22096537 6.850000e-61 246.0
127 TraesCS7B01G018300 chr3D 88.636 88 8 2 7213 7299 482100904 482100990 1.210000e-18 106.0
128 TraesCS7B01G018300 chr3D 90.476 63 6 0 3845 3907 293192805 293192743 5.680000e-12 84.2
129 TraesCS7B01G018300 chr3D 100.000 32 0 0 6884 6915 62164241 62164210 9.580000e-05 60.2
130 TraesCS7B01G018300 chr3D 97.143 35 1 0 6881 6915 266377705 266377671 9.580000e-05 60.2
131 TraesCS7B01G018300 chr5D 95.495 111 5 0 3919 4029 501822825 501822715 2.530000e-40 178.0
132 TraesCS7B01G018300 chr5D 95.495 111 5 0 3919 4029 501862530 501862420 2.530000e-40 178.0
133 TraesCS7B01G018300 chr5D 95.789 95 4 0 1720 1814 56448461 56448555 4.270000e-33 154.0
134 TraesCS7B01G018300 chr5D 91.111 90 7 1 7209 7298 533991827 533991915 4.330000e-23 121.0
135 TraesCS7B01G018300 chr5D 90.805 87 7 1 7209 7295 533635873 533635958 2.020000e-21 115.0
136 TraesCS7B01G018300 chr5D 83.582 67 9 2 4049 4114 387998444 387998509 2.660000e-05 62.1
137 TraesCS7B01G018300 chr1D 92.308 104 6 2 1713 1814 222908746 222908643 7.150000e-31 147.0
138 TraesCS7B01G018300 chr1D 92.683 82 4 2 7216 7296 491989837 491989757 5.600000e-22 117.0
139 TraesCS7B01G018300 chr1D 91.566 83 5 2 7216 7297 23835768 23835687 7.250000e-21 113.0
140 TraesCS7B01G018300 chr1D 90.361 83 8 0 7213 7295 19017062 19017144 9.380000e-20 110.0
141 TraesCS7B01G018300 chr1D 94.286 70 4 0 7226 7295 6684919 6684988 3.370000e-19 108.0
142 TraesCS7B01G018300 chr1D 91.250 80 6 1 7216 7295 133746745 133746823 3.370000e-19 108.0
143 TraesCS7B01G018300 chr1D 92.188 64 5 0 3839 3902 418194953 418195016 3.400000e-14 91.6
144 TraesCS7B01G018300 chr1D 77.852 149 28 3 8564 8708 342873068 342873215 4.390000e-13 87.9
145 TraesCS7B01G018300 chr1D 100.000 39 0 0 8571 8609 35654227 35654189 1.230000e-08 73.1
146 TraesCS7B01G018300 chr1D 100.000 32 0 0 6884 6915 130108408 130108377 9.580000e-05 60.2
147 TraesCS7B01G018300 chr1D 100.000 32 0 0 6884 6915 433171450 433171481 9.580000e-05 60.2
148 TraesCS7B01G018300 chr1D 92.500 40 2 1 6877 6915 133746833 133746794 1.000000e-03 56.5
149 TraesCS7B01G018300 chr6B 95.890 73 3 0 7225 7297 401488721 401488649 1.560000e-22 119.0
150 TraesCS7B01G018300 chr6B 89.394 66 5 1 3839 3902 222680057 222680122 2.040000e-11 82.4
151 TraesCS7B01G018300 chrUn 91.667 84 5 2 7213 7295 49292911 49292829 2.020000e-21 115.0
152 TraesCS7B01G018300 chrUn 90.805 87 7 1 7209 7295 63047037 63047122 2.020000e-21 115.0
153 TraesCS7B01G018300 chrUn 93.056 72 5 0 7225 7296 93254712 93254641 1.210000e-18 106.0
154 TraesCS7B01G018300 chrUn 90.244 82 6 2 7216 7296 153415744 153415664 1.210000e-18 106.0
155 TraesCS7B01G018300 chrUn 88.750 80 9 0 7213 7292 175480894 175480973 2.030000e-16 99.0
156 TraesCS7B01G018300 chrUn 91.429 70 6 0 7226 7295 244074378 244074447 7.300000e-16 97.1
157 TraesCS7B01G018300 chrUn 92.537 67 5 0 7229 7295 256064436 256064370 7.300000e-16 97.1
158 TraesCS7B01G018300 chrUn 92.537 67 5 0 7229 7295 268674994 268674928 7.300000e-16 97.1
159 TraesCS7B01G018300 chrUn 88.750 80 8 1 7216 7295 317195901 317195823 7.300000e-16 97.1
160 TraesCS7B01G018300 chrUn 88.608 79 8 1 7218 7296 34811458 34811535 2.630000e-15 95.3
161 TraesCS7B01G018300 chrUn 87.500 80 10 0 7216 7295 87937136 87937057 9.440000e-15 93.5
162 TraesCS7B01G018300 chrUn 86.047 86 11 1 7213 7298 21387569 21387485 3.400000e-14 91.6
163 TraesCS7B01G018300 chrUn 100.000 33 0 0 6883 6915 153415662 153415694 2.660000e-05 62.1
164 TraesCS7B01G018300 chrUn 95.000 40 1 1 1372 1411 322336394 322336356 2.660000e-05 62.1
165 TraesCS7B01G018300 chrUn 100.000 31 0 0 6885 6915 93254641 93254671 3.450000e-04 58.4
166 TraesCS7B01G018300 chrUn 100.000 31 0 0 6885 6915 420677992 420678022 3.450000e-04 58.4
167 TraesCS7B01G018300 chrUn 100.000 30 0 0 6886 6915 21387488 21387517 1.000000e-03 56.5
168 TraesCS7B01G018300 chrUn 100.000 30 0 0 6886 6915 49292829 49292858 1.000000e-03 56.5
169 TraesCS7B01G018300 chrUn 100.000 30 0 0 6886 6915 63047122 63047093 1.000000e-03 56.5
170 TraesCS7B01G018300 chrUn 97.059 34 0 1 6883 6915 91443828 91443795 1.000000e-03 56.5
171 TraesCS7B01G018300 chrUn 100.000 30 0 0 6886 6915 244074447 244074418 1.000000e-03 56.5
172 TraesCS7B01G018300 chrUn 100.000 30 0 0 6886 6915 256064370 256064399 1.000000e-03 56.5
173 TraesCS7B01G018300 chr4B 93.506 77 5 0 1335 1411 410668295 410668219 2.020000e-21 115.0
174 TraesCS7B01G018300 chr4B 88.043 92 11 0 7204 7295 598024567 598024476 9.380000e-20 110.0
175 TraesCS7B01G018300 chr1A 77.852 149 28 3 8564 8708 442606677 442606824 4.390000e-13 87.9
176 TraesCS7B01G018300 chr1A 90.625 64 6 0 3839 3902 515547422 515547485 1.580000e-12 86.1
177 TraesCS7B01G018300 chr1A 100.000 39 0 0 8571 8609 34409785 34409747 1.230000e-08 73.1
178 TraesCS7B01G018300 chr1A 100.000 35 0 0 8572 8606 59842240 59842206 2.060000e-06 65.8
179 TraesCS7B01G018300 chr1A 100.000 33 0 0 6883 6915 22735973 22735941 2.660000e-05 62.1
180 TraesCS7B01G018300 chr1A 100.000 33 0 0 6883 6915 72478277 72478245 2.660000e-05 62.1
181 TraesCS7B01G018300 chr1A 95.000 40 1 1 1372 1411 574283408 574283446 2.660000e-05 62.1
182 TraesCS7B01G018300 chr4A 95.000 40 1 1 1372 1411 714762970 714763008 2.660000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G018300 chr7B 15300854 15309688 8834 True 16316.000000 16316 100.000000 1 8835 1 chr7B.!!$R5 8834
1 TraesCS7B01G018300 chr7B 15037515 15039624 2109 True 1563.000000 2145 93.960000 2425 4646 2 chr7B.!!$R11 2221
2 TraesCS7B01G018300 chr7B 678100011 678100822 811 True 1175.000000 1175 92.796000 1 815 1 chr7B.!!$R7 814
3 TraesCS7B01G018300 chr7B 15020700 15022541 1841 True 1092.000000 1980 90.245500 6574 8835 2 chr7B.!!$R9 2261
4 TraesCS7B01G018300 chr7B 15028746 15032523 3777 True 894.666667 1279 94.194333 4657 6584 3 chr7B.!!$R10 1927
5 TraesCS7B01G018300 chr7B 15078930 15079754 824 True 833.000000 833 85.631000 7470 8285 1 chr7B.!!$R2 815
6 TraesCS7B01G018300 chr7B 217426456 217427548 1092 True 813.000000 813 80.860000 5466 6561 1 chr7B.!!$R6 1095
7 TraesCS7B01G018300 chr7B 15100265 15100951 686 True 774.000000 774 86.813000 6750 7476 1 chr7B.!!$R3 726
8 TraesCS7B01G018300 chr7B 15072255 15072795 540 True 634.000000 634 88.007000 8282 8835 1 chr7B.!!$R1 553
9 TraesCS7B01G018300 chr7B 15288943 15292479 3536 True 443.000000 457 83.479500 7695 8834 2 chr7B.!!$R12 1139
10 TraesCS7B01G018300 chr7A 77197529 77205139 7610 True 1379.000000 3339 91.368000 823 8168 7 chr7A.!!$R6 7345
11 TraesCS7B01G018300 chr7A 117151732 117152268 536 False 850.000000 850 95.353000 1803 2336 1 chr7A.!!$F1 533
12 TraesCS7B01G018300 chr7D 73107039 73115443 8404 False 1166.333333 3265 93.316667 823 8835 9 chr7D.!!$F7 8012
13 TraesCS7B01G018300 chr5B 109899090 109899917 827 False 1386.000000 1386 96.871000 1 828 1 chr5B.!!$F2 827
14 TraesCS7B01G018300 chr5B 177127660 177128470 810 True 1264.000000 1264 94.730000 1 816 1 chr5B.!!$R1 815
15 TraesCS7B01G018300 chr3B 82433358 82434171 813 True 1282.000000 1282 95.098000 1 814 1 chr3B.!!$R2 813
16 TraesCS7B01G018300 chr3B 14264004 14264811 807 True 1243.000000 1243 94.356000 1 814 1 chr3B.!!$R1 813
17 TraesCS7B01G018300 chr3B 407203832 407204646 814 False 1173.000000 1173 92.683000 1 815 1 chr3B.!!$F3 814
18 TraesCS7B01G018300 chr1B 615476224 615477038 814 True 1164.000000 1164 92.457000 1 817 1 chr1B.!!$R4 816
19 TraesCS7B01G018300 chr1B 618190925 618191734 809 False 1162.000000 1162 92.543000 1 814 1 chr1B.!!$F5 813
20 TraesCS7B01G018300 chr2B 90758133 90758942 809 True 1162.000000 1162 92.552000 1 815 1 chr2B.!!$R1 814
21 TraesCS7B01G018300 chr6A 421292261 421293083 822 True 624.000000 856 93.302000 1431 2336 2 chr6A.!!$R3 905
22 TraesCS7B01G018300 chr5A 409743498 409744325 827 True 622.000000 856 93.023500 1427 2336 2 chr5A.!!$R4 909
23 TraesCS7B01G018300 chr2A 465073514 465074049 535 True 850.000000 850 95.353000 1803 2336 1 chr2A.!!$R4 533
24 TraesCS7B01G018300 chr2A 518823739 518824275 536 True 850.000000 850 95.353000 1803 2336 1 chr2A.!!$R5 533
25 TraesCS7B01G018300 chr2A 149628897 149629431 534 True 846.000000 846 95.336000 1803 2334 1 chr2A.!!$R3 531
26 TraesCS7B01G018300 chr2A 30680095 30680922 827 True 619.500000 845 93.007000 1427 2336 2 chr2A.!!$R6 909
27 TraesCS7B01G018300 chr2A 8156879 8157576 697 True 547.000000 547 81.692000 5864 6550 1 chr2A.!!$R1 686
28 TraesCS7B01G018300 chr4D 95865222 95866790 1568 False 526.000000 839 79.663500 5466 7036 2 chr4D.!!$F6 1570
29 TraesCS7B01G018300 chr2D 643704448 643705359 911 False 512.000000 512 77.823000 6122 7059 1 chr2D.!!$F2 937
30 TraesCS7B01G018300 chr3A 84091170 84092730 1560 False 378.500000 407 84.289500 4882 6471 2 chr3A.!!$F3 1589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 603 0.179059 TTCACATGTGCCACGTCAGT 60.179 50.0 21.38 0.0 0.0 3.41 F
1239 1260 0.030603 ATCCCCTCTCCCTTCACTCC 60.031 60.0 0.00 0.0 0.0 3.85 F
1249 1270 0.173708 CCTTCACTCCGTACTGGCTC 59.826 60.0 0.00 0.0 37.8 4.70 F
3224 3275 0.324275 AACAACAACCACCACAGCCT 60.324 50.0 0.00 0.0 0.0 4.58 F
3948 4001 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.0 0.00 0.0 0.0 4.02 F
3949 4002 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.0 0.00 0.0 0.0 4.46 F
4018 4071 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.0 0.00 0.0 0.0 4.79 F
5210 5273 0.256177 GGGGAAAGAGGGATCACACC 59.744 60.0 0.00 0.0 0.0 4.16 F
6870 10664 0.253044 CCTCTCCAATGGCTTCGGAA 59.747 55.0 0.00 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 1719 0.041833 AGCAGGCACTCCCTTCTCTA 59.958 55.000 0.00 0.0 43.06 2.43 R
3224 3275 0.768221 AGTGTCTTGGCCCTCTTGGA 60.768 55.000 0.00 0.0 35.39 3.53 R
3277 3328 1.649271 GGAGGGATGGGGCAAGTGAT 61.649 60.000 0.00 0.0 0.00 3.06 R
4181 4234 1.726791 CACGTGGAATGACACAGCTAC 59.273 52.381 7.95 0.0 41.38 3.58 R
5509 5740 0.249155 TTCGTGCGAACTCGGAAAGT 60.249 50.000 2.65 0.0 42.34 2.66 R
5515 5746 2.856091 AATTCTTTCGTGCGAACTCG 57.144 45.000 6.52 0.0 43.27 4.18 R
5833 7966 3.245052 GCCCTCCAACCTCATAATATGCT 60.245 47.826 0.00 0.0 0.00 3.79 R
7160 10957 1.107945 CAAGCATGCCATGTCATCCA 58.892 50.000 15.66 0.0 0.00 3.41 R
8318 14785 0.165944 GATTTGGTTGCGTCTCGTGG 59.834 55.000 0.00 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
472 475 2.355363 CGCCAGTTCGTCGTCCAA 60.355 61.111 0.00 0.00 0.00 3.53
593 603 0.179059 TTCACATGTGCCACGTCAGT 60.179 50.000 21.38 0.00 0.00 3.41
768 779 2.886862 TACTTTCACGTCGGGTTCAA 57.113 45.000 0.00 0.00 0.00 2.69
783 794 6.859508 GTCGGGTTCAATTTTCGACTAAAAAT 59.140 34.615 0.00 0.00 44.38 1.82
816 827 3.948473 TCAAAACAGTGATTTCGTCCCAA 59.052 39.130 0.00 0.00 0.00 4.12
817 828 4.036262 TCAAAACAGTGATTTCGTCCCAAG 59.964 41.667 0.00 0.00 0.00 3.61
818 829 3.485463 AACAGTGATTTCGTCCCAAGA 57.515 42.857 0.00 0.00 0.00 3.02
819 830 3.045601 ACAGTGATTTCGTCCCAAGAG 57.954 47.619 0.00 0.00 0.00 2.85
820 831 2.632996 ACAGTGATTTCGTCCCAAGAGA 59.367 45.455 0.00 0.00 0.00 3.10
821 832 3.071023 ACAGTGATTTCGTCCCAAGAGAA 59.929 43.478 0.00 0.00 0.00 2.87
833 844 2.364647 CCCAAGAGAAGGGTCCGTATAC 59.635 54.545 0.00 0.00 41.61 1.47
835 846 3.181478 CCAAGAGAAGGGTCCGTATACAC 60.181 52.174 3.32 0.00 0.00 2.90
863 874 6.509418 TTTTCTTTGAGGGAATCCGTAATG 57.491 37.500 0.00 0.00 38.33 1.90
868 879 1.342174 GAGGGAATCCGTAATGCCGTA 59.658 52.381 0.00 0.00 33.02 4.02
872 883 2.919229 GGAATCCGTAATGCCGTATACG 59.081 50.000 18.40 18.40 39.44 3.06
879 890 3.121463 CGTAATGCCGTATACGCTTTCTG 60.121 47.826 19.86 6.19 38.18 3.02
884 895 3.129113 TGCCGTATACGCTTTCTGTCTTA 59.871 43.478 19.86 0.00 38.18 2.10
925 936 4.671569 CGCTCCATCGCTAGCCCC 62.672 72.222 9.66 0.00 35.22 5.80
1239 1260 0.030603 ATCCCCTCTCCCTTCACTCC 60.031 60.000 0.00 0.00 0.00 3.85
1246 1267 0.818296 CTCCCTTCACTCCGTACTGG 59.182 60.000 0.00 0.00 40.09 4.00
1247 1268 1.218316 CCCTTCACTCCGTACTGGC 59.782 63.158 0.00 0.00 37.80 4.85
1249 1270 0.173708 CCTTCACTCCGTACTGGCTC 59.826 60.000 0.00 0.00 37.80 4.70
1252 1273 1.136984 CACTCCGTACTGGCTCGAC 59.863 63.158 0.00 0.00 37.80 4.20
1255 1276 3.812019 CCGTACTGGCTCGACGCT 61.812 66.667 6.78 0.00 39.13 5.07
1256 1277 2.577112 CGTACTGGCTCGACGCTG 60.577 66.667 6.78 3.87 39.13 5.18
1361 1382 5.910166 CACTAGATCTTTCGTTCGATCGAAT 59.090 40.000 31.24 15.13 46.55 3.34
1364 1385 5.103000 AGATCTTTCGTTCGATCGAATTGT 58.897 37.500 31.24 16.99 46.55 2.71
1429 1450 3.914426 TCTGATTTAAGAGGCCCTGAC 57.086 47.619 0.00 0.00 0.00 3.51
1467 1488 6.826668 TGAACAATCTAGACCTGAAACTGAA 58.173 36.000 10.02 0.00 0.00 3.02
1489 1510 3.883489 AGCAGTTTTACCTGAGTTTGTCC 59.117 43.478 0.00 0.00 34.23 4.02
1618 1642 0.680921 TTAGCTTGTCAGGGCATGCC 60.681 55.000 29.47 29.47 39.44 4.40
1641 1665 2.317040 CTAGCGAAGAAGGGGGTCATA 58.683 52.381 0.00 0.00 0.00 2.15
1648 1672 4.384208 CGAAGAAGGGGGTCATACTGAAAT 60.384 45.833 0.00 0.00 0.00 2.17
1719 1745 2.412591 AGGGAGTGCCTGCTTGTATAT 58.587 47.619 0.59 0.00 0.00 0.86
1720 1746 3.587498 AGGGAGTGCCTGCTTGTATATA 58.413 45.455 0.59 0.00 0.00 0.86
1721 1747 3.325135 AGGGAGTGCCTGCTTGTATATAC 59.675 47.826 0.59 5.89 0.00 1.47
1722 1748 3.325135 GGGAGTGCCTGCTTGTATATACT 59.675 47.826 13.89 0.00 0.00 2.12
1723 1749 4.561105 GGAGTGCCTGCTTGTATATACTC 58.439 47.826 13.89 0.97 34.19 2.59
1724 1750 4.561105 GAGTGCCTGCTTGTATATACTCC 58.439 47.826 13.89 3.36 0.00 3.85
1725 1751 3.325135 AGTGCCTGCTTGTATATACTCCC 59.675 47.826 13.89 3.04 0.00 4.30
1726 1752 3.325135 GTGCCTGCTTGTATATACTCCCT 59.675 47.826 13.89 0.00 0.00 4.20
1727 1753 3.578716 TGCCTGCTTGTATATACTCCCTC 59.421 47.826 13.89 0.63 0.00 4.30
1728 1754 3.835395 GCCTGCTTGTATATACTCCCTCT 59.165 47.826 13.89 0.00 0.00 3.69
1729 1755 4.322349 GCCTGCTTGTATATACTCCCTCTG 60.322 50.000 13.89 3.76 0.00 3.35
1730 1756 4.835615 CCTGCTTGTATATACTCCCTCTGT 59.164 45.833 13.89 0.00 0.00 3.41
1731 1757 5.047660 CCTGCTTGTATATACTCCCTCTGTC 60.048 48.000 13.89 0.00 0.00 3.51
1732 1758 4.833380 TGCTTGTATATACTCCCTCTGTCC 59.167 45.833 13.89 0.00 0.00 4.02
1733 1759 4.221041 GCTTGTATATACTCCCTCTGTCCC 59.779 50.000 13.89 0.00 0.00 4.46
1734 1760 5.394738 CTTGTATATACTCCCTCTGTCCCA 58.605 45.833 13.89 0.00 0.00 4.37
1735 1761 5.616975 TGTATATACTCCCTCTGTCCCAT 57.383 43.478 13.89 0.00 0.00 4.00
1736 1762 6.730001 TGTATATACTCCCTCTGTCCCATA 57.270 41.667 13.89 0.00 0.00 2.74
1737 1763 7.111136 TGTATATACTCCCTCTGTCCCATAA 57.889 40.000 13.89 0.00 0.00 1.90
1738 1764 7.719424 TGTATATACTCCCTCTGTCCCATAAT 58.281 38.462 13.89 0.00 0.00 1.28
1739 1765 7.619698 TGTATATACTCCCTCTGTCCCATAATG 59.380 40.741 13.89 0.00 0.00 1.90
1740 1766 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
1741 1767 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
1742 1768 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
1743 1769 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
1744 1770 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
1745 1771 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
1746 1772 4.501571 CCCTCTGTCCCATAATGTAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
1747 1773 4.099573 CCTCTGTCCCATAATGTAAGACGT 59.900 45.833 0.00 0.00 0.00 4.34
1748 1774 5.395324 CCTCTGTCCCATAATGTAAGACGTT 60.395 44.000 0.00 0.00 0.00 3.99
1749 1775 6.045072 TCTGTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
1750 1776 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
1751 1777 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
1796 1822 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
1797 1823 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
1798 1824 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
1799 1825 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
1800 1826 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
1801 1827 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
1907 1933 9.275398 TGGTTACTAACGTAATTCATTGTTTCT 57.725 29.630 0.00 0.00 37.87 2.52
1954 1980 9.654663 GTTATAAAGCCAGAATATCGGATAACT 57.345 33.333 1.16 2.51 0.00 2.24
2093 2119 9.696917 GTTCAGTTTTCATTCTCCATTGTTAAT 57.303 29.630 0.00 0.00 0.00 1.40
2195 2226 7.027778 ACTACCATGAGTGTTTTGTTTTCTC 57.972 36.000 0.00 0.00 0.00 2.87
2329 2364 6.658816 TGTTTATGTCCTCATTTAGTGCATGT 59.341 34.615 0.00 0.00 35.70 3.21
2352 2387 8.560355 TGTGTATGTGCTAGAAATGTACAAAT 57.440 30.769 0.00 0.00 34.09 2.32
2355 2390 9.225436 TGTATGTGCTAGAAATGTACAAATGAA 57.775 29.630 0.00 0.00 34.09 2.57
2404 2439 1.202582 TCAGCGAGGAGTCAGCTTTAC 59.797 52.381 4.54 0.00 39.48 2.01
2546 2581 4.027437 AGGTTTTGTTAAGTTTGCAGGGA 58.973 39.130 0.00 0.00 0.00 4.20
2571 2606 2.266055 GGTTCTCCTGCTGGACCG 59.734 66.667 8.48 0.10 37.46 4.79
2623 2658 5.636903 AGATGGTGTAGCTTGTTCCATAT 57.363 39.130 10.76 6.75 38.74 1.78
2649 2687 5.372343 TGGCATATCTAAACACTGGATGT 57.628 39.130 0.00 0.00 46.42 3.06
2667 2705 6.298361 TGGATGTAACATATGTCTGAATGGG 58.702 40.000 9.23 0.00 0.00 4.00
2699 2737 9.277783 CTAAGGAGTAAGGAATACATGGAAATG 57.722 37.037 0.00 0.00 36.94 2.32
2763 2812 9.830975 GATAATTTTATTTTAGTTGGTGGCCAT 57.169 29.630 9.72 0.00 31.53 4.40
2765 2814 6.926630 TTTTATTTTAGTTGGTGGCCATCT 57.073 33.333 18.94 12.10 37.36 2.90
2791 2840 7.189693 TGCTGTTGTAACTATTTCAGACTTG 57.810 36.000 0.00 0.00 0.00 3.16
2801 2850 7.033530 ACTATTTCAGACTTGGATCGTAGAG 57.966 40.000 0.23 0.00 43.63 2.43
2855 2904 1.209128 GTACGAGGGCATGATTCACG 58.791 55.000 0.00 0.00 0.00 4.35
2857 2906 0.465705 ACGAGGGCATGATTCACGAT 59.534 50.000 0.00 0.00 0.00 3.73
2914 2963 6.715280 TGTTCATTTTCTAGAGAAGCATCCT 58.285 36.000 1.86 0.00 35.21 3.24
2929 2978 1.822990 CATCCTGCCATTCTGCAAACT 59.177 47.619 0.00 0.00 41.51 2.66
2943 2992 4.701651 TCTGCAAACTTGTATGCTTATGCT 59.298 37.500 1.96 0.00 42.97 3.79
2973 3022 8.892723 CATATACTCTTTGTTACAAAGGCATGA 58.107 33.333 29.95 17.21 0.00 3.07
3134 3185 0.375106 GAAAGATTCTTGCGGAGGCG 59.625 55.000 0.00 0.00 44.10 5.52
3214 3265 2.734079 CACCACAACAACAACAACAACC 59.266 45.455 0.00 0.00 0.00 3.77
3224 3275 0.324275 AACAACAACCACCACAGCCT 60.324 50.000 0.00 0.00 0.00 4.58
3296 3347 1.649271 ATCACTTGCCCCATCCCTCC 61.649 60.000 0.00 0.00 0.00 4.30
3303 3354 3.496160 CCCATCCCTCCCTGCCAG 61.496 72.222 0.00 0.00 0.00 4.85
3437 3488 3.507622 CCCAACTTGAATCCACTTTCTCC 59.492 47.826 0.00 0.00 0.00 3.71
3441 3492 4.392940 ACTTGAATCCACTTTCTCCTGTG 58.607 43.478 0.00 0.00 0.00 3.66
3585 3637 9.783081 ATCTACCTTGAAAATTGCAAGAAAATT 57.217 25.926 15.06 0.00 44.16 1.82
3616 3668 8.481314 GGGTATACTGGTTAAACTAGTTTAGCT 58.519 37.037 29.63 18.77 36.46 3.32
3660 3712 8.561738 TTGTTGTTCTATCCATTCTAAGTTCC 57.438 34.615 0.00 0.00 0.00 3.62
3693 3745 6.818644 TGAAATAGTTGTCTCTATGGCAGAAC 59.181 38.462 0.00 0.00 31.91 3.01
3767 3819 8.648693 ACAACCTTAAGTTATGTAGTGAAGTCT 58.351 33.333 0.97 0.00 36.18 3.24
3780 3832 4.764172 AGTGAAGTCTGTGCTATCCATTC 58.236 43.478 0.00 0.00 0.00 2.67
3784 3836 3.051581 AGTCTGTGCTATCCATTCCCAT 58.948 45.455 0.00 0.00 0.00 4.00
3815 3867 7.923414 ACCAAGGTTCTGCTACTTTTATTAG 57.077 36.000 0.00 0.00 0.00 1.73
3928 3981 9.541884 AACCACATTTGTAAAATAATACTCCCT 57.458 29.630 0.00 0.00 0.00 4.20
3929 3982 9.185680 ACCACATTTGTAAAATAATACTCCCTC 57.814 33.333 0.00 0.00 0.00 4.30
3930 3983 8.630037 CCACATTTGTAAAATAATACTCCCTCC 58.370 37.037 0.00 0.00 0.00 4.30
3931 3984 8.342634 CACATTTGTAAAATAATACTCCCTCCG 58.657 37.037 0.00 0.00 0.00 4.63
3932 3985 8.050930 ACATTTGTAAAATAATACTCCCTCCGT 58.949 33.333 0.00 0.00 0.00 4.69
3933 3986 8.557029 CATTTGTAAAATAATACTCCCTCCGTC 58.443 37.037 0.00 0.00 0.00 4.79
3934 3987 6.165700 TGTAAAATAATACTCCCTCCGTCC 57.834 41.667 0.00 0.00 0.00 4.79
3935 3988 4.332428 AAAATAATACTCCCTCCGTCCG 57.668 45.455 0.00 0.00 0.00 4.79
3936 3989 2.965671 ATAATACTCCCTCCGTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
3937 3990 2.734755 TAATACTCCCTCCGTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
3938 3991 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
3939 3992 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
3940 3993 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
3941 3994 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
3942 3995 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
3943 3996 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
3944 3997 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
3945 3998 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
3946 3999 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
3947 4000 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
3948 4001 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
3949 4002 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
3950 4003 1.314730 GTCCGAAAAAGCTTGTCCCA 58.685 50.000 0.00 0.00 0.00 4.37
3951 4004 1.001706 GTCCGAAAAAGCTTGTCCCAC 60.002 52.381 0.00 0.00 0.00 4.61
3952 4005 1.028905 CCGAAAAAGCTTGTCCCACA 58.971 50.000 0.00 0.00 0.00 4.17
3953 4006 1.407258 CCGAAAAAGCTTGTCCCACAA 59.593 47.619 0.00 0.00 36.54 3.33
3954 4007 2.159170 CCGAAAAAGCTTGTCCCACAAA 60.159 45.455 0.00 0.00 37.69 2.83
3955 4008 3.492482 CCGAAAAAGCTTGTCCCACAAAT 60.492 43.478 0.00 0.00 37.69 2.32
3956 4009 3.735746 CGAAAAAGCTTGTCCCACAAATC 59.264 43.478 0.00 0.00 37.69 2.17
3957 4010 3.369546 AAAAGCTTGTCCCACAAATCG 57.630 42.857 0.00 0.00 37.69 3.34
3958 4011 2.270352 AAGCTTGTCCCACAAATCGA 57.730 45.000 0.00 0.00 37.69 3.59
3959 4012 2.496899 AGCTTGTCCCACAAATCGAT 57.503 45.000 0.00 0.00 37.69 3.59
3960 4013 2.086869 AGCTTGTCCCACAAATCGATG 58.913 47.619 0.00 0.00 37.69 3.84
3961 4014 1.812571 GCTTGTCCCACAAATCGATGT 59.187 47.619 0.00 0.00 37.69 3.06
3962 4015 3.006940 GCTTGTCCCACAAATCGATGTA 58.993 45.455 0.00 0.00 37.69 2.29
3963 4016 3.627577 GCTTGTCCCACAAATCGATGTAT 59.372 43.478 0.00 0.00 37.69 2.29
3964 4017 4.260784 GCTTGTCCCACAAATCGATGTATC 60.261 45.833 0.00 0.00 37.69 2.24
3965 4018 4.753516 TGTCCCACAAATCGATGTATCT 57.246 40.909 0.00 0.00 30.84 1.98
3966 4019 5.862678 TGTCCCACAAATCGATGTATCTA 57.137 39.130 0.00 0.00 30.84 1.98
3967 4020 5.842907 TGTCCCACAAATCGATGTATCTAG 58.157 41.667 0.00 0.00 30.84 2.43
3968 4021 4.686554 GTCCCACAAATCGATGTATCTAGC 59.313 45.833 0.00 0.00 30.84 3.42
3969 4022 4.343814 TCCCACAAATCGATGTATCTAGCA 59.656 41.667 0.00 0.00 30.84 3.49
3970 4023 4.449068 CCCACAAATCGATGTATCTAGCAC 59.551 45.833 0.00 0.00 30.84 4.40
3971 4024 5.292765 CCACAAATCGATGTATCTAGCACT 58.707 41.667 0.00 0.00 30.84 4.40
3972 4025 6.447162 CCACAAATCGATGTATCTAGCACTA 58.553 40.000 0.00 0.00 30.84 2.74
3973 4026 6.923508 CCACAAATCGATGTATCTAGCACTAA 59.076 38.462 0.00 0.00 30.84 2.24
3974 4027 7.096023 CCACAAATCGATGTATCTAGCACTAAC 60.096 40.741 0.00 0.00 30.84 2.34
3975 4028 7.649705 CACAAATCGATGTATCTAGCACTAACT 59.350 37.037 0.00 0.00 30.84 2.24
3976 4029 8.198109 ACAAATCGATGTATCTAGCACTAACTT 58.802 33.333 0.00 0.00 0.00 2.66
3977 4030 8.483218 CAAATCGATGTATCTAGCACTAACTTG 58.517 37.037 0.00 0.00 0.00 3.16
3978 4031 6.073327 TCGATGTATCTAGCACTAACTTGG 57.927 41.667 0.00 0.00 0.00 3.61
3979 4032 5.593095 TCGATGTATCTAGCACTAACTTGGT 59.407 40.000 0.00 0.00 0.00 3.67
3980 4033 5.687730 CGATGTATCTAGCACTAACTTGGTG 59.312 44.000 0.97 0.97 37.70 4.17
3992 4045 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3993 4046 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3994 4047 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
3995 4048 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
3996 4049 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
3997 4050 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
3998 4051 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
3999 4052 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
4000 4053 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
4001 4054 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
4002 4055 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
4003 4056 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
4004 4057 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
4005 4058 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
4006 4059 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
4007 4060 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
4008 4061 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
4009 4062 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
4010 4063 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
4011 4064 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
4012 4065 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
4013 4066 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
4014 4067 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
4015 4068 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
4016 4069 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
4017 4070 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
4018 4071 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
4019 4072 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
4020 4073 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
4021 4074 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
4022 4075 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
4023 4076 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
4024 4077 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
4025 4078 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
4181 4234 1.065418 ACCTCCTTTGCATCCCTAACG 60.065 52.381 0.00 0.00 0.00 3.18
4199 4252 0.992072 CGTAGCTGTGTCATTCCACG 59.008 55.000 0.00 0.00 38.20 4.94
4302 4355 7.441836 ACTTGTTTTTCTTTCTGTTTTGTCCT 58.558 30.769 0.00 0.00 0.00 3.85
4820 4873 6.415573 GTTTCCTGTTCATACCTGAGGTTAT 58.584 40.000 10.53 0.00 37.09 1.89
4835 4888 6.127897 CCTGAGGTTATGCTAAAAGGTTTCAG 60.128 42.308 0.00 0.00 0.00 3.02
4856 4909 9.653287 TTTCAGTTTCGTAATATCATCTCAACT 57.347 29.630 0.00 0.00 0.00 3.16
5076 5135 3.896888 ACATGAAGCCCTCAAATGACAAA 59.103 39.130 0.00 0.00 37.67 2.83
5116 5178 0.693049 AGTTTGTTCTCGCCCTCCAT 59.307 50.000 0.00 0.00 0.00 3.41
5210 5273 0.256177 GGGGAAAGAGGGATCACACC 59.744 60.000 0.00 0.00 0.00 4.16
5264 5412 5.462729 TGCTGACAAAACAATGTGCAAATAG 59.537 36.000 0.00 0.00 31.63 1.73
5417 5565 7.804843 AAATGCAGAAAATCTAGGAGAGATG 57.195 36.000 0.00 0.00 44.68 2.90
5436 5584 9.296400 GAGAGATGACATAGTGTTTCTAACTTC 57.704 37.037 0.00 0.00 31.94 3.01
5509 5740 9.253832 ACATGTGATCATATTTTTCTTTACCCA 57.746 29.630 1.61 0.00 32.47 4.51
5515 5746 9.803315 GATCATATTTTTCTTTACCCACTTTCC 57.197 33.333 0.00 0.00 0.00 3.13
5543 5774 6.904954 TCGCACGAAAGAATTAAAATTCAC 57.095 33.333 15.76 7.40 45.59 3.18
5612 6042 9.950680 AAGTCACTACTTGTTGATTTAAATGTG 57.049 29.630 5.17 4.51 44.40 3.21
5693 6123 7.885399 GGTAGGCTCAACCAATTCAGAATATAT 59.115 37.037 1.45 0.00 43.14 0.86
5743 6173 5.971202 GGTTAAGATCACAAAACACACACTG 59.029 40.000 0.00 0.00 0.00 3.66
5862 7995 1.004277 TGAGGTTGGAGGGCACAATAC 59.996 52.381 0.00 0.00 0.00 1.89
5947 8086 1.072331 TCCTCAGGTTTTCTGCTCCAC 59.928 52.381 0.00 0.00 43.06 4.02
6404 10092 7.043565 CAGATCCATAAACAAAATTGAAGGGG 58.956 38.462 0.00 0.00 0.00 4.79
6431 10128 9.547753 GAATGTGAGGCTAATTAAATACTGAGA 57.452 33.333 0.00 0.00 0.00 3.27
6725 10519 1.579429 GGTCCCAATGTGTGCGTTC 59.421 57.895 0.00 0.00 0.00 3.95
6734 10528 1.286260 GTGTGCGTTCGTCCTCTCT 59.714 57.895 0.00 0.00 0.00 3.10
6752 10546 1.971505 CTTAGTGGATCTGCGGCCCA 61.972 60.000 0.00 2.78 0.00 5.36
6795 10589 4.248691 GCTGAAAAGAAAACCAGCTCAT 57.751 40.909 0.00 0.00 46.04 2.90
6834 10628 1.677552 GGTGGTCCGATTCTGGTGT 59.322 57.895 0.00 0.00 0.00 4.16
6864 10658 0.779997 AACCAACCTCTCCAATGGCT 59.220 50.000 0.00 0.00 36.37 4.75
6870 10664 0.253044 CCTCTCCAATGGCTTCGGAA 59.747 55.000 0.00 0.00 0.00 4.30
6939 10736 0.978146 AGGTAAGACTGCGGCTCCAT 60.978 55.000 0.00 0.00 0.00 3.41
6942 10739 0.975556 TAAGACTGCGGCTCCATGGA 60.976 55.000 15.27 15.27 0.00 3.41
6947 10744 2.268920 GCGGCTCCATGGAAGTCA 59.731 61.111 17.00 0.00 0.00 3.41
6951 10748 1.134280 CGGCTCCATGGAAGTCATCTT 60.134 52.381 17.00 0.00 32.92 2.40
7015 10812 0.822121 AACCGTTGGGGAGAAACTGC 60.822 55.000 0.00 0.00 39.97 4.40
7052 10849 2.760374 GGAGATGGTGGTCGATCATTC 58.240 52.381 0.00 0.00 32.45 2.67
7059 10856 6.484643 AGATGGTGGTCGATCATTCTATTTTG 59.515 38.462 0.00 0.00 32.45 2.44
7066 10863 5.293569 GTCGATCATTCTATTTTGGTTCGGT 59.706 40.000 0.00 0.00 0.00 4.69
7070 10867 7.223971 CGATCATTCTATTTTGGTTCGGTTAGA 59.776 37.037 0.00 0.00 0.00 2.10
7081 10878 3.350833 GTTCGGTTAGAGAGGGTCAGTA 58.649 50.000 0.00 0.00 0.00 2.74
7160 10957 1.346395 TGGTAATGGAACGCACTGAGT 59.654 47.619 0.00 0.00 0.00 3.41
7180 10977 1.108776 GGATGACATGGCATGCTTGT 58.891 50.000 24.64 21.47 34.26 3.16
7371 11186 4.878439 TGTACTGTGCTTGTCGTTCTATT 58.122 39.130 0.00 0.00 0.00 1.73
7372 11187 4.684242 TGTACTGTGCTTGTCGTTCTATTG 59.316 41.667 0.00 0.00 0.00 1.90
7373 11188 3.728845 ACTGTGCTTGTCGTTCTATTGT 58.271 40.909 0.00 0.00 0.00 2.71
7374 11189 4.878439 ACTGTGCTTGTCGTTCTATTGTA 58.122 39.130 0.00 0.00 0.00 2.41
7375 11190 4.684703 ACTGTGCTTGTCGTTCTATTGTAC 59.315 41.667 0.00 0.00 0.00 2.90
7376 11191 4.878439 TGTGCTTGTCGTTCTATTGTACT 58.122 39.130 0.00 0.00 0.00 2.73
7377 11192 4.684242 TGTGCTTGTCGTTCTATTGTACTG 59.316 41.667 0.00 0.00 0.00 2.74
7378 11193 4.684703 GTGCTTGTCGTTCTATTGTACTGT 59.315 41.667 0.00 0.00 0.00 3.55
7379 11194 4.684242 TGCTTGTCGTTCTATTGTACTGTG 59.316 41.667 0.00 0.00 0.00 3.66
7380 11195 4.434330 GCTTGTCGTTCTATTGTACTGTGC 60.434 45.833 0.00 0.00 0.00 4.57
7381 11196 4.514781 TGTCGTTCTATTGTACTGTGCT 57.485 40.909 0.00 0.00 0.00 4.40
7382 11197 4.878439 TGTCGTTCTATTGTACTGTGCTT 58.122 39.130 0.00 0.00 0.00 3.91
7383 11198 4.684242 TGTCGTTCTATTGTACTGTGCTTG 59.316 41.667 0.00 0.00 0.00 4.01
7384 11199 4.684703 GTCGTTCTATTGTACTGTGCTTGT 59.315 41.667 0.00 0.00 0.00 3.16
7385 11200 4.921515 TCGTTCTATTGTACTGTGCTTGTC 59.078 41.667 0.00 0.00 0.00 3.18
7386 11201 4.201494 CGTTCTATTGTACTGTGCTTGTCG 60.201 45.833 0.00 0.00 0.00 4.35
7387 11202 4.514781 TCTATTGTACTGTGCTTGTCGT 57.485 40.909 0.00 0.00 0.00 4.34
7388 11203 4.878439 TCTATTGTACTGTGCTTGTCGTT 58.122 39.130 0.00 0.00 0.00 3.85
7389 11204 4.921515 TCTATTGTACTGTGCTTGTCGTTC 59.078 41.667 0.00 0.00 0.00 3.95
7390 11205 2.882927 TGTACTGTGCTTGTCGTTCT 57.117 45.000 0.00 0.00 0.00 3.01
7391 11206 3.994204 TGTACTGTGCTTGTCGTTCTA 57.006 42.857 0.00 0.00 0.00 2.10
7392 11207 4.514781 TGTACTGTGCTTGTCGTTCTAT 57.485 40.909 0.00 0.00 0.00 1.98
7393 11208 4.482386 TGTACTGTGCTTGTCGTTCTATC 58.518 43.478 0.00 0.00 0.00 2.08
7394 11209 2.960819 ACTGTGCTTGTCGTTCTATCC 58.039 47.619 0.00 0.00 0.00 2.59
7395 11210 2.299013 ACTGTGCTTGTCGTTCTATCCA 59.701 45.455 0.00 0.00 0.00 3.41
7396 11211 2.926200 CTGTGCTTGTCGTTCTATCCAG 59.074 50.000 0.00 0.00 0.00 3.86
7397 11212 2.299013 TGTGCTTGTCGTTCTATCCAGT 59.701 45.455 0.00 0.00 0.00 4.00
7398 11213 2.924290 GTGCTTGTCGTTCTATCCAGTC 59.076 50.000 0.00 0.00 0.00 3.51
7399 11214 2.826128 TGCTTGTCGTTCTATCCAGTCT 59.174 45.455 0.00 0.00 0.00 3.24
7434 11249 5.324784 TGTCGCAATAGTTGTCTCTATGT 57.675 39.130 0.00 0.00 31.91 2.29
7543 11359 5.355071 TCTGGCTAAAGCTGTAAATCACATG 59.645 40.000 1.39 0.00 41.70 3.21
7798 11665 1.715585 GATGCACGACAATGACCCG 59.284 57.895 0.00 0.00 0.00 5.28
7835 11702 0.174389 CCTGCTCAGCACGACATAGT 59.826 55.000 0.00 0.00 33.79 2.12
7836 11703 1.554392 CTGCTCAGCACGACATAGTC 58.446 55.000 0.00 0.00 33.79 2.59
7853 11729 3.594603 AGTCGACGAATTCTCCACATT 57.405 42.857 10.46 0.00 0.00 2.71
7865 11741 4.271696 TCTCCACATTTGTACAGTGAGG 57.728 45.455 13.68 14.85 35.33 3.86
7885 11766 2.060980 AGGTCCCGCTTCTAGCCAG 61.061 63.158 0.00 0.00 38.18 4.85
7934 11859 1.847328 TGTAATGGAGTCTGGAGCGA 58.153 50.000 0.00 0.00 0.00 4.93
7952 11877 2.864097 GCGATTCAGTGTGTCTGTCAGT 60.864 50.000 0.00 0.00 43.97 3.41
8019 11962 5.855395 AGTCTTTCGACACAGTACGTTATTC 59.145 40.000 0.00 0.00 42.73 1.75
8020 11963 4.847757 TCTTTCGACACAGTACGTTATTCG 59.152 41.667 0.00 0.00 46.00 3.34
8022 11965 2.095819 TCGACACAGTACGTTATTCGCA 60.096 45.455 0.00 0.00 44.19 5.10
8024 11967 4.030366 CGACACAGTACGTTATTCGCATA 58.970 43.478 0.00 0.00 44.19 3.14
8025 11968 4.673761 CGACACAGTACGTTATTCGCATAT 59.326 41.667 0.00 0.00 44.19 1.78
8026 11969 5.386019 CGACACAGTACGTTATTCGCATATG 60.386 44.000 0.00 0.00 44.19 1.78
8027 11970 5.345702 ACACAGTACGTTATTCGCATATGT 58.654 37.500 4.29 0.00 44.19 2.29
8028 11971 5.231357 ACACAGTACGTTATTCGCATATGTG 59.769 40.000 10.11 10.11 42.70 3.21
8029 11972 5.231357 CACAGTACGTTATTCGCATATGTGT 59.769 40.000 15.62 0.55 44.19 3.72
8030 11973 5.231357 ACAGTACGTTATTCGCATATGTGTG 59.769 40.000 15.62 5.57 44.19 3.82
8031 11974 5.231357 CAGTACGTTATTCGCATATGTGTGT 59.769 40.000 15.62 8.42 44.19 3.72
8032 11975 4.514545 ACGTTATTCGCATATGTGTGTG 57.485 40.909 15.62 4.63 44.19 3.82
8033 11976 3.930229 ACGTTATTCGCATATGTGTGTGT 59.070 39.130 15.62 5.18 44.19 3.72
8034 11977 4.201676 ACGTTATTCGCATATGTGTGTGTG 60.202 41.667 15.62 6.03 44.19 3.82
8035 11978 4.201676 CGTTATTCGCATATGTGTGTGTGT 60.202 41.667 15.62 0.90 37.16 3.72
8036 11979 3.745332 ATTCGCATATGTGTGTGTGTG 57.255 42.857 15.62 0.00 37.16 3.82
8037 11980 2.162319 TCGCATATGTGTGTGTGTGT 57.838 45.000 15.62 0.00 37.16 3.72
8038 11981 1.797635 TCGCATATGTGTGTGTGTGTG 59.202 47.619 15.62 0.00 37.16 3.82
8048 11991 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
8063 12006 3.882288 TGTGTGTGTGTATTGCTGTGAAT 59.118 39.130 0.00 0.00 0.00 2.57
8145 12094 1.508088 CCAGCGCCAAGGAAATGTC 59.492 57.895 2.29 0.00 0.00 3.06
8156 12105 0.681243 GGAAATGTCAGGACCCAGGC 60.681 60.000 0.00 0.00 0.00 4.85
8269 14736 6.812656 GTCTCTGGAGATATGCATACATCTTG 59.187 42.308 8.99 5.41 39.97 3.02
8270 14737 5.485620 TCTGGAGATATGCATACATCTTGC 58.514 41.667 8.99 0.00 37.74 4.01
8274 14741 3.434641 AGATATGCATACATCTTGCGTGC 59.565 43.478 8.99 0.00 43.10 5.34
8280 14747 1.847818 TACATCTTGCGTGCCGATAC 58.152 50.000 0.00 0.00 0.00 2.24
8315 14782 2.470781 CGAAACGCAGATTGAACTCGAC 60.471 50.000 0.00 0.00 0.00 4.20
8318 14785 0.716108 CGCAGATTGAACTCGACCAC 59.284 55.000 0.00 0.00 0.00 4.16
8319 14786 1.079503 GCAGATTGAACTCGACCACC 58.920 55.000 0.00 0.00 0.00 4.61
8421 14888 3.533105 ACGACACCGCCACTGTGA 61.533 61.111 9.86 0.00 39.95 3.58
8422 14889 2.734723 CGACACCGCCACTGTGAG 60.735 66.667 9.86 2.83 37.18 3.51
8452 14929 0.304705 CACTCACTTGCACGTGGTTC 59.695 55.000 21.71 0.59 35.63 3.62
8520 14997 4.039357 GGTGCTGTGCTGCTGCTG 62.039 66.667 17.00 0.77 41.79 4.41
8521 14998 4.702081 GTGCTGTGCTGCTGCTGC 62.702 66.667 22.51 22.51 41.79 5.25
8522 14999 4.949098 TGCTGTGCTGCTGCTGCT 62.949 61.111 27.67 0.00 41.79 4.24
8523 15000 4.406173 GCTGTGCTGCTGCTGCTG 62.406 66.667 27.67 16.73 40.48 4.41
8748 15245 1.154225 GCTCGCCGTTGGTTTGATG 60.154 57.895 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 5.365314 AGAATTGGTGTTGGTAATGTGGTTT 59.635 36.000 0.00 0.00 0.00 3.27
324 325 8.480501 CCAATCCTCCATTTATTTTCAGTCAAT 58.519 33.333 0.00 0.00 0.00 2.57
593 603 2.973600 CCGAACCCGCCGTTTTCA 60.974 61.111 0.00 0.00 33.74 2.69
768 779 8.194769 ACCTTGTCACAATTTTTAGTCGAAAAT 58.805 29.630 0.00 0.00 40.06 1.82
783 794 4.075682 TCACTGTTTTGACCTTGTCACAA 58.924 39.130 0.00 0.00 42.60 3.33
816 827 3.666345 AGTGTATACGGACCCTTCTCT 57.334 47.619 0.00 0.00 0.00 3.10
817 828 4.732672 AAAGTGTATACGGACCCTTCTC 57.267 45.455 0.00 0.00 0.00 2.87
818 829 5.494390 AAAAAGTGTATACGGACCCTTCT 57.506 39.130 0.00 0.00 0.00 2.85
846 857 1.474320 CGGCATTACGGATTCCCTCAA 60.474 52.381 0.00 0.00 0.00 3.02
847 858 0.105964 CGGCATTACGGATTCCCTCA 59.894 55.000 0.00 0.00 0.00 3.86
848 859 0.106149 ACGGCATTACGGATTCCCTC 59.894 55.000 0.00 0.00 38.39 4.30
855 866 0.953727 AGCGTATACGGCATTACGGA 59.046 50.000 25.55 0.00 40.23 4.69
863 874 2.205307 AGACAGAAAGCGTATACGGC 57.795 50.000 25.55 17.40 40.23 5.68
868 879 2.756760 TCGGGTAAGACAGAAAGCGTAT 59.243 45.455 0.00 0.00 0.00 3.06
872 883 1.068055 TCGTCGGGTAAGACAGAAAGC 60.068 52.381 0.00 0.00 40.98 3.51
879 890 0.798776 TCGTCTTCGTCGGGTAAGAC 59.201 55.000 12.83 12.83 45.26 3.01
884 895 1.008079 GTGTTCGTCTTCGTCGGGT 60.008 57.895 0.00 0.00 38.33 5.28
1191 1206 2.829458 GAGGACGACGAGGAGGGG 60.829 72.222 0.00 0.00 0.00 4.79
1247 1268 2.276493 CGACCGTACAGCGTCGAG 60.276 66.667 17.58 0.00 42.29 4.04
1249 1270 3.599792 AACCGACCGTACAGCGTCG 62.600 63.158 16.21 16.21 40.76 5.12
1252 1273 2.807895 CCAACCGACCGTACAGCG 60.808 66.667 0.00 0.00 40.95 5.18
1255 1276 2.029369 GCACCAACCGACCGTACA 59.971 61.111 0.00 0.00 0.00 2.90
1256 1277 2.739671 GGCACCAACCGACCGTAC 60.740 66.667 0.00 0.00 0.00 3.67
1289 1310 2.183555 GGGTTGTCCGCTACCGAG 59.816 66.667 0.00 0.00 40.63 4.63
1361 1382 2.010670 CGCACGAAACCACTCACAA 58.989 52.632 0.00 0.00 0.00 3.33
1364 1385 3.334751 CGCGCACGAAACCACTCA 61.335 61.111 8.75 0.00 43.93 3.41
1429 1450 6.336842 AGATTGTTCAATTCCACTTTCCAG 57.663 37.500 0.00 0.00 0.00 3.86
1467 1488 3.883489 GGACAAACTCAGGTAAAACTGCT 59.117 43.478 0.00 0.00 38.36 4.24
1505 1527 5.744887 GCCGGTTATAAGAGAAATGATGGGA 60.745 44.000 1.90 0.00 0.00 4.37
1508 1530 6.808008 ATGCCGGTTATAAGAGAAATGATG 57.192 37.500 1.90 0.00 0.00 3.07
1524 1546 0.322456 AAGCACACACATATGCCGGT 60.322 50.000 1.90 0.00 43.12 5.28
1618 1642 0.688087 ACCCCCTTCTTCGCTAGGAG 60.688 60.000 0.00 0.00 33.13 3.69
1648 1672 9.859152 AACCAATTTCTCCCAATATTTTTCAAA 57.141 25.926 0.00 0.00 0.00 2.69
1693 1719 0.041833 AGCAGGCACTCCCTTCTCTA 59.958 55.000 0.00 0.00 43.06 2.43
1771 1797 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
1772 1798 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
1773 1799 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
1774 1800 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
1775 1801 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
1777 1803 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
1778 1804 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
1779 1805 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
1780 1806 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
1781 1807 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1782 1808 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1783 1809 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1784 1810 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
1785 1811 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
1786 1812 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
1787 1813 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
1788 1814 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
1789 1815 3.036819 AGTAAAATACTCCCTCCGTCCC 58.963 50.000 0.00 0.00 32.47 4.46
1790 1816 3.450096 ACAGTAAAATACTCCCTCCGTCC 59.550 47.826 0.00 0.00 36.76 4.79
1791 1817 4.732672 ACAGTAAAATACTCCCTCCGTC 57.267 45.455 0.00 0.00 36.76 4.79
1792 1818 4.828829 CAACAGTAAAATACTCCCTCCGT 58.171 43.478 0.00 0.00 36.76 4.69
1793 1819 3.621715 GCAACAGTAAAATACTCCCTCCG 59.378 47.826 0.00 0.00 36.76 4.63
1794 1820 4.844884 AGCAACAGTAAAATACTCCCTCC 58.155 43.478 0.00 0.00 36.76 4.30
1795 1821 5.816258 GGTAGCAACAGTAAAATACTCCCTC 59.184 44.000 0.00 0.00 36.76 4.30
1796 1822 5.249852 TGGTAGCAACAGTAAAATACTCCCT 59.750 40.000 0.00 0.00 36.76 4.20
1797 1823 5.493809 TGGTAGCAACAGTAAAATACTCCC 58.506 41.667 0.00 0.00 36.76 4.30
1798 1824 6.458342 GCATGGTAGCAACAGTAAAATACTCC 60.458 42.308 0.00 0.00 36.76 3.85
1799 1825 6.458342 GGCATGGTAGCAACAGTAAAATACTC 60.458 42.308 0.00 0.00 34.56 2.59
1800 1826 5.357032 GGCATGGTAGCAACAGTAAAATACT 59.643 40.000 0.00 0.00 36.30 2.12
1801 1827 5.124776 TGGCATGGTAGCAACAGTAAAATAC 59.875 40.000 0.00 0.00 35.83 1.89
1985 2011 6.874134 GCATAAGAGAACAGGAAAGTAGTGAA 59.126 38.462 0.00 0.00 0.00 3.18
2195 2226 3.019564 CCCAAGGAGAATAACTGGCAAG 58.980 50.000 0.00 0.00 0.00 4.01
2309 2344 4.592942 ACACATGCACTAAATGAGGACAT 58.407 39.130 0.00 0.00 38.50 3.06
2329 2364 8.785329 TCATTTGTACATTTCTAGCACATACA 57.215 30.769 0.00 0.00 0.00 2.29
2352 2387 6.816134 TGCTAAGTTGCTAACAATCATTCA 57.184 33.333 0.00 0.00 38.27 2.57
2355 2390 7.578310 ATGATGCTAAGTTGCTAACAATCAT 57.422 32.000 0.00 0.00 38.27 2.45
2404 2439 3.443681 CACCAAGGGCACTAATTAACAGG 59.556 47.826 0.00 0.00 0.00 4.00
2571 2606 7.377766 TCAATTAGTCTGCTAACAATGGAAC 57.622 36.000 0.00 0.00 39.70 3.62
2623 2658 6.000246 TCCAGTGTTTAGATATGCCATCAA 58.000 37.500 0.00 0.00 0.00 2.57
2649 2687 6.384015 AGACACTCCCATTCAGACATATGTTA 59.616 38.462 10.30 0.00 0.00 2.41
2667 2705 7.642082 TGTATTCCTTACTCCTTAGACACTC 57.358 40.000 0.00 0.00 0.00 3.51
2699 2737 7.467623 CATGCAAGTTCTTCTATAACAAGACC 58.532 38.462 0.00 0.00 29.30 3.85
2763 2812 7.715249 AGTCTGAAATAGTTACAACAGCAAAGA 59.285 33.333 0.00 0.00 0.00 2.52
2765 2814 7.801716 AGTCTGAAATAGTTACAACAGCAAA 57.198 32.000 0.00 0.00 0.00 3.68
2791 2840 2.230508 TCACACCAACACTCTACGATCC 59.769 50.000 0.00 0.00 0.00 3.36
2801 2850 9.042008 CCATACTATTAACTATCACACCAACAC 57.958 37.037 0.00 0.00 0.00 3.32
2914 2963 3.614630 GCATACAAGTTTGCAGAATGGCA 60.615 43.478 10.14 0.00 43.19 4.92
2943 2992 7.497909 GCCTTTGTAACAAAGAGTATATGCCTA 59.502 37.037 1.34 0.00 0.00 3.93
2973 3022 4.466370 GGGAAGGGTAAATAAAAAGCAGCT 59.534 41.667 0.00 0.00 0.00 4.24
3134 3185 2.239400 CAGTTGGGGTTTTCCTTCTCC 58.761 52.381 0.00 0.00 40.46 3.71
3214 3265 1.002868 CCTCTTGGAGGCTGTGGTG 60.003 63.158 0.00 0.00 43.29 4.17
3224 3275 0.768221 AGTGTCTTGGCCCTCTTGGA 60.768 55.000 0.00 0.00 35.39 3.53
3277 3328 1.649271 GGAGGGATGGGGCAAGTGAT 61.649 60.000 0.00 0.00 0.00 3.06
3303 3354 9.542462 TTTCACCATATTAATGTACTACTGCTC 57.458 33.333 0.00 0.00 0.00 4.26
3585 3637 9.719433 AACTAGTTTAACCAGTATACCCTCATA 57.281 33.333 1.12 0.00 0.00 2.15
3605 3657 4.717280 ACATAGGCCTGAAGCTAAACTAGT 59.283 41.667 17.99 0.00 43.05 2.57
3616 3668 1.279496 AGCACAGACATAGGCCTGAA 58.721 50.000 17.99 0.00 34.65 3.02
3767 3819 3.824133 CAAGATGGGAATGGATAGCACA 58.176 45.455 0.00 0.00 0.00 4.57
3780 3832 2.025887 AGAACCTTGGTAGCAAGATGGG 60.026 50.000 31.19 19.77 34.26 4.00
3784 3836 1.699634 AGCAGAACCTTGGTAGCAAGA 59.300 47.619 31.19 0.94 34.26 3.02
3861 3914 8.253867 TGACTTAGGACAAAGTTAGGACTTAA 57.746 34.615 0.00 0.00 45.18 1.85
3871 3924 7.939784 AAAGAAGTTTGACTTAGGACAAAGT 57.060 32.000 2.92 3.87 38.80 2.66
3902 3955 9.541884 AGGGAGTATTATTTTACAAATGTGGTT 57.458 29.630 0.00 0.00 0.00 3.67
3907 3960 8.446599 ACGGAGGGAGTATTATTTTACAAATG 57.553 34.615 0.00 0.00 0.00 2.32
3908 3961 7.718314 GGACGGAGGGAGTATTATTTTACAAAT 59.282 37.037 0.00 0.00 0.00 2.32
3912 3965 5.010012 TCGGACGGAGGGAGTATTATTTTAC 59.990 44.000 0.00 0.00 0.00 2.01
3921 3974 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
3922 3975 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
3923 3976 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
3924 3977 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
3925 3978 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
3926 3979 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
3927 3980 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
3928 3981 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
3929 3982 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
3930 3983 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
3931 3984 1.001706 GTGGGACAAGCTTTTTCGGAC 60.002 52.381 0.00 0.00 44.16 4.79
3932 3985 1.314730 GTGGGACAAGCTTTTTCGGA 58.685 50.000 0.00 0.00 44.16 4.55
3933 3986 1.028905 TGTGGGACAAGCTTTTTCGG 58.971 50.000 0.00 0.00 44.16 4.30
3934 3987 2.861462 TTGTGGGACAAGCTTTTTCG 57.139 45.000 0.00 0.00 44.16 3.46
3935 3988 3.735746 CGATTTGTGGGACAAGCTTTTTC 59.264 43.478 0.00 0.00 44.16 2.29
3936 3989 3.383185 TCGATTTGTGGGACAAGCTTTTT 59.617 39.130 0.00 0.00 44.16 1.94
3937 3990 2.955660 TCGATTTGTGGGACAAGCTTTT 59.044 40.909 0.00 0.00 44.16 2.27
3938 3991 2.582052 TCGATTTGTGGGACAAGCTTT 58.418 42.857 0.00 0.00 44.16 3.51
3939 3992 2.270352 TCGATTTGTGGGACAAGCTT 57.730 45.000 0.00 0.00 44.16 3.74
3940 3993 2.086869 CATCGATTTGTGGGACAAGCT 58.913 47.619 0.00 0.00 44.16 3.74
3941 3994 1.812571 ACATCGATTTGTGGGACAAGC 59.187 47.619 0.00 0.00 44.16 4.01
3942 3995 5.118990 AGATACATCGATTTGTGGGACAAG 58.881 41.667 0.00 0.00 44.16 3.16
3943 3996 5.097742 AGATACATCGATTTGTGGGACAA 57.902 39.130 0.00 0.00 44.16 3.18
3944 3997 4.753516 AGATACATCGATTTGTGGGACA 57.246 40.909 0.00 0.00 0.00 4.02
3945 3998 4.686554 GCTAGATACATCGATTTGTGGGAC 59.313 45.833 0.00 0.00 0.00 4.46
3946 3999 4.343814 TGCTAGATACATCGATTTGTGGGA 59.656 41.667 0.00 0.00 0.00 4.37
3947 4000 4.449068 GTGCTAGATACATCGATTTGTGGG 59.551 45.833 0.00 0.00 0.00 4.61
3948 4001 5.292765 AGTGCTAGATACATCGATTTGTGG 58.707 41.667 0.00 0.00 0.00 4.17
3949 4002 7.649705 AGTTAGTGCTAGATACATCGATTTGTG 59.350 37.037 0.00 0.00 0.00 3.33
3950 4003 7.717568 AGTTAGTGCTAGATACATCGATTTGT 58.282 34.615 0.00 0.00 0.00 2.83
3951 4004 8.483218 CAAGTTAGTGCTAGATACATCGATTTG 58.517 37.037 0.00 0.00 0.00 2.32
3952 4005 7.653713 CCAAGTTAGTGCTAGATACATCGATTT 59.346 37.037 0.00 0.00 0.00 2.17
3953 4006 7.148641 CCAAGTTAGTGCTAGATACATCGATT 58.851 38.462 0.00 0.00 0.00 3.34
3954 4007 6.265649 ACCAAGTTAGTGCTAGATACATCGAT 59.734 38.462 0.00 0.00 0.00 3.59
3955 4008 5.593095 ACCAAGTTAGTGCTAGATACATCGA 59.407 40.000 0.00 0.00 0.00 3.59
3956 4009 5.687730 CACCAAGTTAGTGCTAGATACATCG 59.312 44.000 0.00 0.00 0.00 3.84
3968 4021 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
3969 4022 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
3970 4023 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
3971 4024 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
3972 4025 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
3973 4026 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
3974 4027 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
3975 4028 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
3976 4029 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
3977 4030 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
3978 4031 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
3979 4032 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3980 4033 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
3981 4034 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
3982 4035 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
3983 4036 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
3984 4037 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3985 4038 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3986 4039 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3987 4040 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3988 4041 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3989 4042 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
3990 4043 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
3991 4044 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
3992 4045 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
3993 4046 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
3994 4047 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
3995 4048 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
3996 4049 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
3997 4050 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
3998 4051 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
3999 4052 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
4000 4053 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
4001 4054 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
4002 4055 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
4003 4056 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
4004 4057 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
4005 4058 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
4006 4059 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
4007 4060 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
4008 4061 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
4009 4062 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
4010 4063 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
4011 4064 2.107031 TCATATACTCCCTCCGTCCGAA 59.893 50.000 0.00 0.00 0.00 4.30
4012 4065 1.701292 TCATATACTCCCTCCGTCCGA 59.299 52.381 0.00 0.00 0.00 4.55
4013 4066 2.195741 TCATATACTCCCTCCGTCCG 57.804 55.000 0.00 0.00 0.00 4.79
4014 4067 4.950205 TTTTCATATACTCCCTCCGTCC 57.050 45.455 0.00 0.00 0.00 4.79
4015 4068 6.347859 AGATTTTCATATACTCCCTCCGTC 57.652 41.667 0.00 0.00 0.00 4.79
4016 4069 7.011382 AGTAGATTTTCATATACTCCCTCCGT 58.989 38.462 0.00 0.00 32.89 4.69
4017 4070 7.316640 CAGTAGATTTTCATATACTCCCTCCG 58.683 42.308 0.00 0.00 35.60 4.63
4018 4071 7.100409 GCAGTAGATTTTCATATACTCCCTCC 58.900 42.308 0.00 0.00 35.60 4.30
4019 4072 7.600752 GTGCAGTAGATTTTCATATACTCCCTC 59.399 40.741 0.00 0.00 35.60 4.30
4020 4073 7.445945 GTGCAGTAGATTTTCATATACTCCCT 58.554 38.462 0.00 0.00 35.60 4.20
4021 4074 6.366332 CGTGCAGTAGATTTTCATATACTCCC 59.634 42.308 0.00 0.00 35.60 4.30
4022 4075 7.145985 TCGTGCAGTAGATTTTCATATACTCC 58.854 38.462 0.00 0.00 35.60 3.85
4023 4076 8.575565 TTCGTGCAGTAGATTTTCATATACTC 57.424 34.615 0.00 0.00 35.60 2.59
4024 4077 8.942338 TTTCGTGCAGTAGATTTTCATATACT 57.058 30.769 0.00 0.00 37.84 2.12
4098 4151 8.982685 AGAAATGTGCTAATATCTACAACATCG 58.017 33.333 0.00 0.00 0.00 3.84
4181 4234 1.726791 CACGTGGAATGACACAGCTAC 59.273 52.381 7.95 0.00 41.38 3.58
4199 4252 2.355756 ACATCTGGCGTGCATTTATCAC 59.644 45.455 0.00 0.00 0.00 3.06
4480 4533 5.045215 CACATAATACAGCAAAGCATTGGG 58.955 41.667 3.55 0.00 37.02 4.12
4820 4873 6.680874 TTACGAAACTGAAACCTTTTAGCA 57.319 33.333 0.00 0.00 0.00 3.49
5179 5242 5.734140 TCCCTCTTTCCCCAAATAGTTATGA 59.266 40.000 0.00 0.00 0.00 2.15
5180 5243 6.013554 TCCCTCTTTCCCCAAATAGTTATG 57.986 41.667 0.00 0.00 0.00 1.90
5181 5244 6.392842 TGATCCCTCTTTCCCCAAATAGTTAT 59.607 38.462 0.00 0.00 0.00 1.89
5222 5370 4.892934 TCAGCAAAGGTCAAACTACCATTT 59.107 37.500 0.00 0.00 42.40 2.32
5236 5384 3.001533 GCACATTGTTTTGTCAGCAAAGG 59.998 43.478 0.00 0.00 44.32 3.11
5304 5452 6.380414 TGGCCCATCCATTTGATTATCTAAA 58.620 36.000 0.00 0.00 40.72 1.85
5412 5560 8.254508 AGGAAGTTAGAAACACTATGTCATCTC 58.745 37.037 0.00 0.00 31.62 2.75
5417 5565 9.924650 TTAGAAGGAAGTTAGAAACACTATGTC 57.075 33.333 0.00 0.00 0.00 3.06
5499 5724 4.383173 GAACTCGGAAAGTGGGTAAAGAA 58.617 43.478 0.00 0.00 38.58 2.52
5501 5732 2.735134 CGAACTCGGAAAGTGGGTAAAG 59.265 50.000 0.00 0.00 38.58 1.85
5509 5740 0.249155 TTCGTGCGAACTCGGAAAGT 60.249 50.000 2.65 0.00 42.34 2.66
5515 5746 2.856091 AATTCTTTCGTGCGAACTCG 57.144 45.000 6.52 0.00 43.27 4.18
5543 5774 3.634397 TTTATCCAGTCAAGCAGGGAG 57.366 47.619 0.00 0.00 31.96 4.30
5612 6042 4.875544 TTTCGATAGGCATTTGTACTGC 57.124 40.909 0.00 0.00 38.93 4.40
5693 6123 5.008619 TGCATCTTGCTTCACTTTGAAAA 57.991 34.783 0.75 0.00 45.31 2.29
5698 6128 4.202284 ACCAAATGCATCTTGCTTCACTTT 60.202 37.500 0.00 0.00 45.31 2.66
5833 7966 3.245052 GCCCTCCAACCTCATAATATGCT 60.245 47.826 0.00 0.00 0.00 3.79
5891 8030 8.983702 AGAGTACAAACAAACTAACCCAAATA 57.016 30.769 0.00 0.00 0.00 1.40
5947 8086 6.428159 GCAATTTCCTATGGTATCACTACAGG 59.572 42.308 0.00 0.00 0.00 4.00
5994 8134 6.403878 TCCAGCTACTTTTTCCAGTATGTAC 58.596 40.000 0.00 0.00 0.00 2.90
6404 10092 8.677148 TCAGTATTTAATTAGCCTCACATTCC 57.323 34.615 0.00 0.00 0.00 3.01
6431 10128 2.237893 CCGATGGTAACCAAAGTAGGGT 59.762 50.000 0.00 0.00 41.41 4.34
6725 10519 2.034053 GCAGATCCACTAAGAGAGGACG 59.966 54.545 0.00 0.00 37.80 4.79
6734 10528 1.971505 CTGGGCCGCAGATCCACTAA 61.972 60.000 14.21 0.00 0.00 2.24
6760 10554 4.457496 CAGCCTCGGTGGTGCGAT 62.457 66.667 0.00 0.00 38.35 4.58
6795 10589 6.037098 CACCCGTTGTTGAAATTGAAACTAA 58.963 36.000 5.42 0.00 0.00 2.24
6834 10628 4.202493 GGAGAGGTTGGTTTTGGTAGGTTA 60.202 45.833 0.00 0.00 0.00 2.85
6864 10658 1.374947 CTGCCAAGGGAGTTCCGAA 59.625 57.895 0.00 0.00 41.52 4.30
6870 10664 2.270434 TAGATTCCTGCCAAGGGAGT 57.730 50.000 6.87 0.00 44.62 3.85
6939 10736 4.639078 TGGTTCATCAAGATGACTTCCA 57.361 40.909 12.04 15.96 46.49 3.53
6942 10739 5.063204 TCGTTTGGTTCATCAAGATGACTT 58.937 37.500 12.04 0.00 46.49 3.01
6947 10744 2.416547 CGCTCGTTTGGTTCATCAAGAT 59.583 45.455 0.00 0.00 0.00 2.40
6951 10748 1.573829 GGCGCTCGTTTGGTTCATCA 61.574 55.000 7.64 0.00 0.00 3.07
6980 10777 1.617947 GGTTGGGAGCCGATCTCTGT 61.618 60.000 4.98 0.00 41.60 3.41
7002 10799 1.140312 AAGACAGCAGTTTCTCCCCA 58.860 50.000 0.00 0.00 0.00 4.96
7052 10849 5.116882 CCCTCTCTAACCGAACCAAAATAG 58.883 45.833 0.00 0.00 0.00 1.73
7059 10856 1.477295 CTGACCCTCTCTAACCGAACC 59.523 57.143 0.00 0.00 0.00 3.62
7066 10863 5.363005 GCCATAAACTACTGACCCTCTCTAA 59.637 44.000 0.00 0.00 0.00 2.10
7070 10867 3.452627 CAGCCATAAACTACTGACCCTCT 59.547 47.826 0.00 0.00 31.67 3.69
7081 10878 1.750778 CGCCATTTCCAGCCATAAACT 59.249 47.619 0.00 0.00 0.00 2.66
7160 10957 1.107945 CAAGCATGCCATGTCATCCA 58.892 50.000 15.66 0.00 0.00 3.41
7202 10999 2.733593 GCCACGTCGTCACCTCAC 60.734 66.667 0.00 0.00 0.00 3.51
7308 11123 2.413963 GGCACTGGCACACACACAA 61.414 57.895 0.00 0.00 43.71 3.33
7371 11186 2.882927 AGAACGACAAGCACAGTACA 57.117 45.000 0.00 0.00 0.00 2.90
7372 11187 3.858238 GGATAGAACGACAAGCACAGTAC 59.142 47.826 0.00 0.00 0.00 2.73
7373 11188 3.508402 TGGATAGAACGACAAGCACAGTA 59.492 43.478 0.00 0.00 0.00 2.74
7374 11189 2.299013 TGGATAGAACGACAAGCACAGT 59.701 45.455 0.00 0.00 0.00 3.55
7375 11190 2.926200 CTGGATAGAACGACAAGCACAG 59.074 50.000 0.00 0.00 0.00 3.66
7376 11191 2.299013 ACTGGATAGAACGACAAGCACA 59.701 45.455 0.00 0.00 0.00 4.57
7377 11192 2.924290 GACTGGATAGAACGACAAGCAC 59.076 50.000 0.00 0.00 0.00 4.40
7378 11193 2.826128 AGACTGGATAGAACGACAAGCA 59.174 45.455 0.00 0.00 0.00 3.91
7379 11194 3.512033 AGACTGGATAGAACGACAAGC 57.488 47.619 0.00 0.00 0.00 4.01
7380 11195 6.622549 ACTTAAGACTGGATAGAACGACAAG 58.377 40.000 10.09 0.00 0.00 3.16
7381 11196 6.585695 ACTTAAGACTGGATAGAACGACAA 57.414 37.500 10.09 0.00 0.00 3.18
7382 11197 6.585695 AACTTAAGACTGGATAGAACGACA 57.414 37.500 10.09 0.00 0.00 4.35
7383 11198 8.976986 TTTAACTTAAGACTGGATAGAACGAC 57.023 34.615 10.09 0.00 0.00 4.34
7384 11199 9.415544 GTTTTAACTTAAGACTGGATAGAACGA 57.584 33.333 10.09 0.00 0.00 3.85
7385 11200 9.420551 AGTTTTAACTTAAGACTGGATAGAACG 57.579 33.333 10.09 0.00 35.21 3.95
7390 11205 9.199982 CGACAAGTTTTAACTTAAGACTGGATA 57.800 33.333 10.09 0.00 46.89 2.59
7391 11206 7.307811 GCGACAAGTTTTAACTTAAGACTGGAT 60.308 37.037 10.09 0.46 46.89 3.41
7392 11207 6.018507 GCGACAAGTTTTAACTTAAGACTGGA 60.019 38.462 10.09 0.00 46.89 3.86
7393 11208 6.134061 GCGACAAGTTTTAACTTAAGACTGG 58.866 40.000 10.09 1.78 46.89 4.00
7394 11209 6.711579 TGCGACAAGTTTTAACTTAAGACTG 58.288 36.000 10.09 0.00 46.89 3.51
7395 11210 6.913873 TGCGACAAGTTTTAACTTAAGACT 57.086 33.333 10.09 0.00 46.89 3.24
7396 11211 9.314501 CTATTGCGACAAGTTTTAACTTAAGAC 57.685 33.333 10.09 0.00 46.89 3.01
7397 11212 9.048446 ACTATTGCGACAAGTTTTAACTTAAGA 57.952 29.630 10.09 0.00 46.89 2.10
7398 11213 9.659830 AACTATTGCGACAAGTTTTAACTTAAG 57.340 29.630 7.49 0.00 46.89 1.85
7399 11214 9.440784 CAACTATTGCGACAAGTTTTAACTTAA 57.559 29.630 7.49 0.00 46.89 1.85
7434 11249 5.804639 TCTAAGTAGGCAAGCATTTTCTCA 58.195 37.500 0.00 0.00 0.00 3.27
7543 11359 4.483476 AATGACTGTTGCTCGTTAAACC 57.517 40.909 0.00 0.00 0.00 3.27
7792 11659 1.979308 TGGATAACTTTGTCCGGGTCA 59.021 47.619 0.00 0.00 40.93 4.02
7798 11665 2.749621 CAGGTGCTGGATAACTTTGTCC 59.250 50.000 0.00 0.00 38.77 4.02
7835 11702 3.659786 ACAAATGTGGAGAATTCGTCGA 58.340 40.909 0.00 0.00 0.00 4.20
7836 11703 4.387559 TGTACAAATGTGGAGAATTCGTCG 59.612 41.667 0.00 0.00 0.00 5.12
7837 11704 5.408604 ACTGTACAAATGTGGAGAATTCGTC 59.591 40.000 0.00 0.00 0.00 4.20
7838 11705 5.179368 CACTGTACAAATGTGGAGAATTCGT 59.821 40.000 5.96 0.00 0.00 3.85
7839 11706 5.408299 TCACTGTACAAATGTGGAGAATTCG 59.592 40.000 12.31 0.00 33.04 3.34
7840 11707 6.128172 CCTCACTGTACAAATGTGGAGAATTC 60.128 42.308 17.27 0.00 33.04 2.17
7841 11708 5.707298 CCTCACTGTACAAATGTGGAGAATT 59.293 40.000 17.27 0.00 33.04 2.17
7842 11709 5.248640 CCTCACTGTACAAATGTGGAGAAT 58.751 41.667 17.27 0.00 33.04 2.40
7853 11729 0.685097 GGACCTGCCTCACTGTACAA 59.315 55.000 0.00 0.00 0.00 2.41
7865 11741 2.202946 GCTAGAAGCGGGACCTGC 60.203 66.667 18.27 18.27 0.00 4.85
7885 11766 4.516698 AGGCAGTACAATGTAGCATAATGC 59.483 41.667 6.91 2.58 45.46 3.56
7898 11823 5.703592 CCATTACAAGTTACAGGCAGTACAA 59.296 40.000 0.00 0.00 30.91 2.41
7905 11830 4.631813 CAGACTCCATTACAAGTTACAGGC 59.368 45.833 0.00 0.00 0.00 4.85
8019 11962 1.530720 ACACACACACACACATATGCG 59.469 47.619 1.58 0.00 0.00 4.73
8020 11963 2.290367 ACACACACACACACACATATGC 59.710 45.455 1.58 0.00 0.00 3.14
8022 11965 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
8024 11967 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
8025 11968 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
8026 11969 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8027 11970 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
8028 11971 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8029 11972 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
8030 11973 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8031 11974 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
8032 11975 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8033 11976 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
8034 11977 3.679725 CAATACACACACACACACACAC 58.320 45.455 0.00 0.00 0.00 3.82
8035 11978 2.096657 GCAATACACACACACACACACA 59.903 45.455 0.00 0.00 0.00 3.72
8036 11979 2.354510 AGCAATACACACACACACACAC 59.645 45.455 0.00 0.00 0.00 3.82
8037 11980 2.354199 CAGCAATACACACACACACACA 59.646 45.455 0.00 0.00 0.00 3.72
8038 11981 2.354510 ACAGCAATACACACACACACAC 59.645 45.455 0.00 0.00 0.00 3.82
8048 11991 5.520288 ACACGAGATATTCACAGCAATACAC 59.480 40.000 0.00 0.00 0.00 2.90
8063 12006 4.279922 TGACAAGAAGTTCCACACGAGATA 59.720 41.667 0.00 0.00 0.00 1.98
8201 12166 4.303853 CGATGGCTCGGTTCTACG 57.696 61.111 0.00 0.00 41.27 3.51
8274 14741 4.546570 TCGAAACTGCAGATATGTATCGG 58.453 43.478 23.35 0.05 37.76 4.18
8280 14747 3.181521 TGCGTTTCGAAACTGCAGATATG 60.182 43.478 34.78 21.44 40.58 1.78
8315 14782 3.041940 GGTTGCGTCTCGTGGTGG 61.042 66.667 0.00 0.00 0.00 4.61
8318 14785 0.165944 GATTTGGTTGCGTCTCGTGG 59.834 55.000 0.00 0.00 0.00 4.94
8319 14786 1.126846 GAGATTTGGTTGCGTCTCGTG 59.873 52.381 0.00 0.00 0.00 4.35
8359 14826 4.038402 GGACAAGCTTTGCCATGCTTATAT 59.962 41.667 10.13 0.89 46.29 0.86
8441 14918 2.280797 GGAGCAGAACCACGTGCA 60.281 61.111 10.91 0.00 42.47 4.57
8452 14929 2.506061 CCTCATCTCGGGGGAGCAG 61.506 68.421 0.00 0.00 0.00 4.24
8695 15172 3.890147 ACCTACCTATGAAGTCGATGACC 59.110 47.826 0.00 0.00 32.18 4.02
8748 15245 3.489785 CGTCAAGCCGTCAGAATTATACC 59.510 47.826 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.