Multiple sequence alignment - TraesCS7B01G018100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G018100 chr7B 100.000 2618 0 0 1 2618 15297321 15299938 0.000000e+00 4835.0
1 TraesCS7B01G018100 chr7B 95.506 1335 39 11 791 2110 15017923 15019251 0.000000e+00 2113.0
2 TraesCS7B01G018100 chr7B 84.201 1095 109 41 1052 2110 14866443 14865377 0.000000e+00 1005.0
3 TraesCS7B01G018100 chr7B 91.985 524 27 10 1052 1573 14788499 14787989 0.000000e+00 721.0
4 TraesCS7B01G018100 chr7B 91.332 473 40 1 1 473 481892060 481892531 0.000000e+00 645.0
5 TraesCS7B01G018100 chr7B 88.627 510 41 9 2118 2618 15019303 15019804 2.880000e-169 604.0
6 TraesCS7B01G018100 chr7B 92.705 329 16 4 2291 2618 15071023 15071344 3.950000e-128 468.0
7 TraesCS7B01G018100 chr7B 93.291 313 19 2 802 1113 15070346 15070657 6.600000e-126 460.0
8 TraesCS7B01G018100 chr7B 87.126 334 31 7 1981 2302 286566747 286566414 4.120000e-98 368.0
9 TraesCS7B01G018100 chr7B 84.694 294 34 6 2327 2618 15268816 15269100 1.530000e-72 283.0
10 TraesCS7B01G018100 chr7B 87.500 152 17 2 2415 2566 14778639 14778490 9.630000e-40 174.0
11 TraesCS7B01G018100 chr7B 83.854 192 13 5 2118 2293 15070789 15070978 1.610000e-37 167.0
12 TraesCS7B01G018100 chr7A 85.638 1316 122 36 792 2076 77194647 77195926 0.000000e+00 1321.0
13 TraesCS7B01G018100 chr7A 80.923 802 109 15 2 759 462290517 462289716 6.240000e-166 593.0
14 TraesCS7B01G018100 chr7A 88.362 464 31 10 2118 2579 77196725 77197167 1.070000e-148 536.0
15 TraesCS7B01G018100 chr7A 93.625 251 16 0 1860 2110 77196423 77196673 2.460000e-100 375.0
16 TraesCS7B01G018100 chr7A 83.333 288 39 6 1825 2106 77196022 77196306 9.300000e-65 257.0
17 TraesCS7B01G018100 chr7A 85.477 241 35 0 519 759 287187215 287187455 4.330000e-63 252.0
18 TraesCS7B01G018100 chr7D 85.406 1343 115 36 793 2106 72216110 72217400 0.000000e+00 1319.0
19 TraesCS7B01G018100 chr7D 83.051 1298 151 46 805 2076 73117390 73116136 0.000000e+00 1114.0
20 TraesCS7B01G018100 chr7D 89.091 715 48 18 1034 1734 71864527 71863829 0.000000e+00 861.0
21 TraesCS7B01G018100 chr7D 89.641 473 48 1 1 473 581434025 581433554 3.730000e-168 601.0
22 TraesCS7B01G018100 chr7D 88.382 241 26 1 519 759 437634494 437634732 3.300000e-74 289.0
23 TraesCS7B01G018100 chr7D 80.632 253 31 11 1863 2105 71863801 71863557 2.070000e-41 180.0
24 TraesCS7B01G018100 chrUn 83.927 1095 101 49 1052 2110 84317792 84316737 0.000000e+00 977.0
25 TraesCS7B01G018100 chrUn 80.690 290 39 13 1828 2107 84330377 84330095 2.640000e-50 209.0
26 TraesCS7B01G018100 chr4D 87.469 798 60 13 1 758 69406664 69407461 0.000000e+00 883.0
27 TraesCS7B01G018100 chr4D 95.338 429 19 1 1039 1466 415583737 415583309 0.000000e+00 680.0
28 TraesCS7B01G018100 chr6A 83.582 804 87 11 1 759 370671705 370670902 0.000000e+00 712.0
29 TraesCS7B01G018100 chr4A 95.550 427 19 0 1039 1465 675854930 675855356 0.000000e+00 684.0
30 TraesCS7B01G018100 chr3D 83.462 780 81 12 24 758 231162193 231162969 0.000000e+00 682.0
31 TraesCS7B01G018100 chr3D 91.875 480 37 1 1 480 426877147 426876670 0.000000e+00 669.0
32 TraesCS7B01G018100 chr3D 93.361 241 16 0 519 759 426876587 426876347 8.910000e-95 357.0
33 TraesCS7B01G018100 chr3D 94.000 50 3 0 2136 2185 189780203 189780252 2.790000e-10 76.8
34 TraesCS7B01G018100 chr1B 91.858 479 36 3 1 478 116131754 116132230 0.000000e+00 665.0
35 TraesCS7B01G018100 chr1B 90.356 477 46 0 2 478 146960095 146959619 6.150000e-176 627.0
36 TraesCS7B01G018100 chr1B 85.802 162 22 1 1950 2110 10931488 10931649 1.250000e-38 171.0
37 TraesCS7B01G018100 chr2B 90.456 482 46 0 1 482 403090244 403089763 1.020000e-178 636.0
38 TraesCS7B01G018100 chr6D 84.279 687 63 9 1 643 144030126 144030811 1.710000e-176 628.0
39 TraesCS7B01G018100 chr2D 89.540 478 48 2 1 478 648450083 648450558 2.880000e-169 604.0
40 TraesCS7B01G018100 chr2D 75.527 237 35 11 2391 2618 477390484 477390706 7.710000e-16 95.3
41 TraesCS7B01G018100 chr2D 93.333 60 4 0 526 585 648450650 648450709 3.590000e-14 89.8
42 TraesCS7B01G018100 chr5B 81.071 803 96 18 1 758 108849304 108848513 8.070000e-165 590.0
43 TraesCS7B01G018100 chr5B 82.875 473 81 0 1 473 678085206 678084734 2.410000e-115 425.0
44 TraesCS7B01G018100 chr5D 87.526 473 57 2 2 473 481939802 481939331 1.770000e-151 545.0
45 TraesCS7B01G018100 chr5D 85.000 240 35 1 519 758 421110735 421110497 2.600000e-60 243.0
46 TraesCS7B01G018100 chr4B 88.843 242 25 2 518 758 124932426 124932666 1.970000e-76 296.0
47 TraesCS7B01G018100 chr2A 86.307 241 33 0 519 759 408076026 408075786 2.000000e-66 263.0
48 TraesCS7B01G018100 chr3B 95.652 46 2 0 479 524 763606385 763606340 1.000000e-09 75.0
49 TraesCS7B01G018100 chr1D 90.741 54 5 0 2136 2189 442117446 442117393 3.610000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G018100 chr7B 15297321 15299938 2617 False 4835.00 4835 100.0000 1 2618 1 chr7B.!!$F2 2617
1 TraesCS7B01G018100 chr7B 15017923 15019804 1881 False 1358.50 2113 92.0665 791 2618 2 chr7B.!!$F4 1827
2 TraesCS7B01G018100 chr7B 14865377 14866443 1066 True 1005.00 1005 84.2010 1052 2110 1 chr7B.!!$R3 1058
3 TraesCS7B01G018100 chr7B 14787989 14788499 510 True 721.00 721 91.9850 1052 1573 1 chr7B.!!$R2 521
4 TraesCS7B01G018100 chr7B 15070346 15071344 998 False 365.00 468 89.9500 802 2618 3 chr7B.!!$F5 1816
5 TraesCS7B01G018100 chr7A 77194647 77197167 2520 False 622.25 1321 87.7395 792 2579 4 chr7A.!!$F2 1787
6 TraesCS7B01G018100 chr7A 462289716 462290517 801 True 593.00 593 80.9230 2 759 1 chr7A.!!$R1 757
7 TraesCS7B01G018100 chr7D 72216110 72217400 1290 False 1319.00 1319 85.4060 793 2106 1 chr7D.!!$F1 1313
8 TraesCS7B01G018100 chr7D 73116136 73117390 1254 True 1114.00 1114 83.0510 805 2076 1 chr7D.!!$R1 1271
9 TraesCS7B01G018100 chr7D 71863557 71864527 970 True 520.50 861 84.8615 1034 2105 2 chr7D.!!$R3 1071
10 TraesCS7B01G018100 chrUn 84316737 84317792 1055 True 977.00 977 83.9270 1052 2110 1 chrUn.!!$R1 1058
11 TraesCS7B01G018100 chr4D 69406664 69407461 797 False 883.00 883 87.4690 1 758 1 chr4D.!!$F1 757
12 TraesCS7B01G018100 chr6A 370670902 370671705 803 True 712.00 712 83.5820 1 759 1 chr6A.!!$R1 758
13 TraesCS7B01G018100 chr3D 231162193 231162969 776 False 682.00 682 83.4620 24 758 1 chr3D.!!$F2 734
14 TraesCS7B01G018100 chr3D 426876347 426877147 800 True 513.00 669 92.6180 1 759 2 chr3D.!!$R1 758
15 TraesCS7B01G018100 chr6D 144030126 144030811 685 False 628.00 628 84.2790 1 643 1 chr6D.!!$F1 642
16 TraesCS7B01G018100 chr2D 648450083 648450709 626 False 346.90 604 91.4365 1 585 2 chr2D.!!$F2 584
17 TraesCS7B01G018100 chr5B 108848513 108849304 791 True 590.00 590 81.0710 1 758 1 chr5B.!!$R1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 672 0.377554 ATACGCCGAGACGACAAGAG 59.622 55.0 0.0 0.0 36.7 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2545 3529 0.242017 GTGGCACCAGCAAGATTGTC 59.758 55.0 6.29 0.0 44.61 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.002505 CATATCCCGTCTCCTGGTCT 57.997 55.000 0.00 0.00 0.00 3.85
187 188 1.926108 AGGACTTAGTGGAGAAGCGT 58.074 50.000 0.00 0.00 0.00 5.07
206 207 2.338620 CGTTGGACTCCAGTCGCA 59.661 61.111 10.39 0.00 45.65 5.10
215 217 2.808543 GACTCCAGTCGCAAAGAAATGT 59.191 45.455 0.00 0.00 35.12 2.71
231 233 0.978146 ATGTAGTCAGGAGCGCCCTT 60.978 55.000 13.96 4.18 44.85 3.95
244 246 1.303317 GCCCTTGACGTCCATTGGT 60.303 57.895 14.12 0.00 0.00 3.67
254 256 0.463833 GTCCATTGGTAGAAGGGCGG 60.464 60.000 1.86 0.00 0.00 6.13
524 552 3.786635 CAGAACGCTGGTAGAAAGCTAT 58.213 45.455 0.00 0.00 38.57 2.97
573 620 1.002017 CCCTCCCCATTGGCAATGT 59.998 57.895 31.88 3.35 37.18 2.71
625 672 0.377554 ATACGCCGAGACGACAAGAG 59.622 55.000 0.00 0.00 36.70 2.85
639 686 1.925972 AAGAGCCCAAGACCTCCCC 60.926 63.158 0.00 0.00 0.00 4.81
662 709 2.819608 GTCCTTAGGCTTGCAAATGTCA 59.180 45.455 0.00 0.00 0.00 3.58
673 720 1.547372 GCAAATGTCAGGCCAACTCAT 59.453 47.619 5.01 0.83 0.00 2.90
705 752 4.760047 GCTTCTCGCCCTTGCCGA 62.760 66.667 0.00 0.00 0.00 5.54
706 753 2.187946 CTTCTCGCCCTTGCCGAT 59.812 61.111 0.00 0.00 33.83 4.18
740 787 2.103263 GGACTGGTATTTGGCGATCTCT 59.897 50.000 0.00 0.00 0.00 3.10
759 806 2.433604 TCTTGATGGAGAGTCTCATGGC 59.566 50.000 21.53 8.26 31.08 4.40
760 807 1.126488 TGATGGAGAGTCTCATGGCC 58.874 55.000 21.53 5.20 31.08 5.36
761 808 1.126488 GATGGAGAGTCTCATGGCCA 58.874 55.000 21.53 8.56 31.08 5.36
762 809 1.487976 GATGGAGAGTCTCATGGCCAA 59.512 52.381 21.53 0.00 31.08 4.52
763 810 0.615331 TGGAGAGTCTCATGGCCAAC 59.385 55.000 21.53 2.50 31.08 3.77
764 811 0.908198 GGAGAGTCTCATGGCCAACT 59.092 55.000 21.53 8.94 31.08 3.16
765 812 1.280421 GGAGAGTCTCATGGCCAACTT 59.720 52.381 21.53 0.00 31.08 2.66
766 813 2.501723 GGAGAGTCTCATGGCCAACTTA 59.498 50.000 21.53 0.00 31.08 2.24
767 814 3.135530 GGAGAGTCTCATGGCCAACTTAT 59.864 47.826 21.53 1.26 31.08 1.73
768 815 4.384647 GGAGAGTCTCATGGCCAACTTATT 60.385 45.833 21.53 0.00 31.08 1.40
769 816 5.184892 AGAGTCTCATGGCCAACTTATTT 57.815 39.130 10.96 0.00 0.00 1.40
770 817 5.189180 AGAGTCTCATGGCCAACTTATTTC 58.811 41.667 10.96 2.73 0.00 2.17
771 818 4.922206 AGTCTCATGGCCAACTTATTTCA 58.078 39.130 10.96 0.00 0.00 2.69
772 819 5.324409 AGTCTCATGGCCAACTTATTTCAA 58.676 37.500 10.96 0.00 0.00 2.69
773 820 5.774690 AGTCTCATGGCCAACTTATTTCAAA 59.225 36.000 10.96 0.00 0.00 2.69
774 821 6.267471 AGTCTCATGGCCAACTTATTTCAAAA 59.733 34.615 10.96 0.00 0.00 2.44
775 822 6.928492 GTCTCATGGCCAACTTATTTCAAAAA 59.072 34.615 10.96 0.00 0.00 1.94
824 871 1.497278 CCGCACAAACACATCTCCG 59.503 57.895 0.00 0.00 0.00 4.63
1488 1574 2.585247 GGTCGCCGGTCATACTGC 60.585 66.667 1.90 0.00 0.00 4.40
1489 1575 2.494918 GTCGCCGGTCATACTGCT 59.505 61.111 1.90 0.00 0.00 4.24
1490 1576 1.878522 GTCGCCGGTCATACTGCTG 60.879 63.158 1.90 0.00 0.00 4.41
1491 1577 2.586079 CGCCGGTCATACTGCTGG 60.586 66.667 1.90 0.00 0.00 4.85
1492 1578 2.203070 GCCGGTCATACTGCTGGG 60.203 66.667 1.90 0.00 0.00 4.45
1493 1579 3.031417 GCCGGTCATACTGCTGGGT 62.031 63.158 1.90 0.00 0.00 4.51
1494 1580 1.682451 GCCGGTCATACTGCTGGGTA 61.682 60.000 1.90 0.00 0.00 3.69
1495 1581 0.104304 CCGGTCATACTGCTGGGTAC 59.896 60.000 0.00 0.00 0.00 3.34
1529 1620 2.159184 TCTTGTCTCGTGATCTGGATGC 60.159 50.000 0.00 0.00 0.00 3.91
1564 1663 5.843673 TGTGTTTGTTGGTGTTGATATGT 57.156 34.783 0.00 0.00 0.00 2.29
1613 1713 3.252400 TGTTCGAATGAAATGGCAATGC 58.748 40.909 0.00 0.00 35.46 3.56
1629 1736 5.047164 TGGCAATGCAAGTTCAGTTATCATT 60.047 36.000 7.79 0.00 0.00 2.57
1723 1852 1.317613 TGGTGTTGCAGTGATGGAAC 58.682 50.000 5.77 5.77 39.97 3.62
1812 1943 4.069304 GTGGTGGCTGTGTTATTCTGTTA 58.931 43.478 0.00 0.00 0.00 2.41
1818 1949 7.116233 GGTGGCTGTGTTATTCTGTTATTTTTG 59.884 37.037 0.00 0.00 0.00 2.44
1819 1950 6.644592 TGGCTGTGTTATTCTGTTATTTTTGC 59.355 34.615 0.00 0.00 0.00 3.68
1820 1951 6.090763 GGCTGTGTTATTCTGTTATTTTTGCC 59.909 38.462 0.00 0.00 0.00 4.52
1823 1954 7.675062 TGTGTTATTCTGTTATTTTTGCCCAT 58.325 30.769 0.00 0.00 0.00 4.00
1927 2785 1.026718 AAGGTGAAGCGGCTACATGC 61.027 55.000 1.35 0.00 41.94 4.06
1986 2852 2.719739 ACTTGCAATGGATCTGGTCTG 58.280 47.619 0.00 0.00 0.00 3.51
2170 3099 4.058124 ACATGTAGTGGTGCATTATAGCG 58.942 43.478 0.00 0.00 37.31 4.26
2171 3100 3.812156 TGTAGTGGTGCATTATAGCGT 57.188 42.857 0.00 0.00 37.31 5.07
2180 3109 5.413213 TGGTGCATTATAGCGTAAACAAGTT 59.587 36.000 0.00 0.00 37.31 2.66
2202 3137 9.702494 AAGTTTATAACAGGACACACTTACTAC 57.298 33.333 0.00 0.00 0.00 2.73
2203 3138 8.863086 AGTTTATAACAGGACACACTTACTACA 58.137 33.333 0.00 0.00 0.00 2.74
2312 3295 0.824109 CCCTGTTATCTGACAGCGGA 59.176 55.000 0.00 0.00 44.45 5.54
2320 3303 6.170506 TGTTATCTGACAGCGGAATAACTTT 58.829 36.000 18.36 0.00 31.68 2.66
2333 3317 5.173131 CGGAATAACTTTGTTTGAGCAACAC 59.827 40.000 0.00 0.00 45.54 3.32
2356 3340 6.870965 CACTATCTCTGAGTAAACTTGTGCTT 59.129 38.462 4.32 0.00 0.00 3.91
2358 3342 5.991328 TCTCTGAGTAAACTTGTGCTTTG 57.009 39.130 4.32 0.00 0.00 2.77
2359 3343 5.670485 TCTCTGAGTAAACTTGTGCTTTGA 58.330 37.500 4.32 0.00 0.00 2.69
2360 3344 6.291377 TCTCTGAGTAAACTTGTGCTTTGAT 58.709 36.000 4.32 0.00 0.00 2.57
2361 3345 6.425114 TCTCTGAGTAAACTTGTGCTTTGATC 59.575 38.462 4.32 0.00 0.00 2.92
2362 3346 6.054941 TCTGAGTAAACTTGTGCTTTGATCA 58.945 36.000 0.00 0.00 0.00 2.92
2363 3347 6.203530 TCTGAGTAAACTTGTGCTTTGATCAG 59.796 38.462 0.00 0.00 31.83 2.90
2364 3348 6.054941 TGAGTAAACTTGTGCTTTGATCAGA 58.945 36.000 0.00 0.00 0.00 3.27
2426 3410 2.092753 TCGGAAGGTGGATACGAGTAGT 60.093 50.000 0.00 0.00 42.51 2.73
2439 3423 2.946329 ACGAGTAGTAGCCACTCATCAG 59.054 50.000 0.00 0.00 42.12 2.90
2464 3448 4.849926 GCAGATGCTATGATATTGTTTGCG 59.150 41.667 0.00 0.00 38.21 4.85
2470 3454 4.023707 GCTATGATATTGTTTGCGGCTTCT 60.024 41.667 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 8.005388 TCCACTAAGTCCTTATACTCAGCTATT 58.995 37.037 0.00 0.00 0.00 1.73
187 188 2.927580 GCGACTGGAGTCCAACGGA 61.928 63.158 27.80 3.72 41.86 4.69
206 207 3.003480 GCGCTCCTGACTACATTTCTTT 58.997 45.455 0.00 0.00 0.00 2.52
231 233 1.553248 CCCTTCTACCAATGGACGTCA 59.447 52.381 18.91 3.91 0.00 4.35
244 246 1.987855 CCAGGACACCGCCCTTCTA 60.988 63.158 0.00 0.00 0.00 2.10
473 476 1.352352 AGTTCTGGCAGGCTGTATTGT 59.648 47.619 17.16 0.00 0.00 2.71
524 552 2.618241 GCTCACCATCATCCGCAATAAA 59.382 45.455 0.00 0.00 0.00 1.40
573 620 4.100084 CACCCGATGGCTCTGGCA 62.100 66.667 0.00 0.00 43.52 4.92
639 686 1.133025 CATTTGCAAGCCTAAGGACCG 59.867 52.381 0.00 0.00 0.00 4.79
662 709 5.589367 AATACCATATGATGAGTTGGCCT 57.411 39.130 3.32 0.00 32.26 5.19
740 787 1.487976 GGCCATGAGACTCTCCATCAA 59.512 52.381 0.00 0.00 0.00 2.57
776 823 9.705290 GGCCACGGATCATTTTTAAATATATTT 57.295 29.630 14.86 14.86 0.00 1.40
777 824 8.865090 TGGCCACGGATCATTTTTAAATATATT 58.135 29.630 0.00 0.00 0.00 1.28
778 825 8.415950 TGGCCACGGATCATTTTTAAATATAT 57.584 30.769 0.00 0.00 0.00 0.86
779 826 7.825331 TGGCCACGGATCATTTTTAAATATA 57.175 32.000 0.00 0.00 0.00 0.86
780 827 6.723298 TGGCCACGGATCATTTTTAAATAT 57.277 33.333 0.00 0.00 0.00 1.28
781 828 6.334202 GTTGGCCACGGATCATTTTTAAATA 58.666 36.000 3.88 0.00 0.00 1.40
782 829 5.175127 GTTGGCCACGGATCATTTTTAAAT 58.825 37.500 3.88 0.00 0.00 1.40
783 830 4.561105 GTTGGCCACGGATCATTTTTAAA 58.439 39.130 3.88 0.00 0.00 1.52
784 831 3.056465 GGTTGGCCACGGATCATTTTTAA 60.056 43.478 3.88 0.00 34.09 1.52
785 832 2.494073 GGTTGGCCACGGATCATTTTTA 59.506 45.455 3.88 0.00 34.09 1.52
786 833 1.275010 GGTTGGCCACGGATCATTTTT 59.725 47.619 3.88 0.00 34.09 1.94
787 834 0.894835 GGTTGGCCACGGATCATTTT 59.105 50.000 3.88 0.00 34.09 1.82
788 835 0.970427 GGGTTGGCCACGGATCATTT 60.970 55.000 3.88 0.00 36.17 2.32
789 836 1.379843 GGGTTGGCCACGGATCATT 60.380 57.895 3.88 0.00 36.17 2.57
824 871 0.876342 GATCAGCCGGAATGGACGTC 60.876 60.000 5.05 7.13 42.00 4.34
1481 1564 2.029623 ACTACGGTACCCAGCAGTATG 58.970 52.381 6.25 0.21 40.87 2.39
1488 1574 1.760192 ACAGCTACTACGGTACCCAG 58.240 55.000 6.25 6.47 0.00 4.45
1489 1575 2.094675 GAACAGCTACTACGGTACCCA 58.905 52.381 6.25 0.00 0.00 4.51
1490 1576 2.373224 AGAACAGCTACTACGGTACCC 58.627 52.381 6.25 0.00 0.00 3.69
1491 1577 3.192212 ACAAGAACAGCTACTACGGTACC 59.808 47.826 0.16 0.16 0.00 3.34
1492 1578 4.155644 AGACAAGAACAGCTACTACGGTAC 59.844 45.833 0.00 0.00 0.00 3.34
1493 1579 4.330250 AGACAAGAACAGCTACTACGGTA 58.670 43.478 0.00 0.00 0.00 4.02
1494 1580 3.155501 AGACAAGAACAGCTACTACGGT 58.844 45.455 0.00 0.00 0.00 4.83
1495 1581 3.728268 CGAGACAAGAACAGCTACTACGG 60.728 52.174 0.00 0.00 0.00 4.02
1496 1582 3.120269 ACGAGACAAGAACAGCTACTACG 60.120 47.826 0.00 0.00 0.00 3.51
1529 1620 1.711060 AAACACAAGCACCCGACACG 61.711 55.000 0.00 0.00 0.00 4.49
1564 1663 2.894765 TCCATAGGAACAGACGACACAA 59.105 45.455 0.00 0.00 0.00 3.33
1629 1736 6.899393 ACTGGAAGACAAAATTAGCATCAA 57.101 33.333 0.00 0.00 37.43 2.57
1812 1943 2.648808 ACCAAATCCCATGGGCAAAAAT 59.351 40.909 27.41 11.23 42.48 1.82
1818 1949 0.536724 GTTCACCAAATCCCATGGGC 59.463 55.000 27.41 3.73 42.48 5.36
1819 1950 2.102578 GAGTTCACCAAATCCCATGGG 58.897 52.381 26.30 26.30 42.48 4.00
1820 1951 2.806434 TGAGTTCACCAAATCCCATGG 58.194 47.619 4.14 4.14 43.84 3.66
1823 1954 4.040217 CCAAAATGAGTTCACCAAATCCCA 59.960 41.667 0.00 0.00 0.00 4.37
1927 2785 4.224433 GCACATAATTCAGAATCGCATGG 58.776 43.478 13.17 6.76 0.00 3.66
1928 2786 4.224433 GGCACATAATTCAGAATCGCATG 58.776 43.478 0.00 3.88 0.00 4.06
1932 2790 3.804325 AGACGGCACATAATTCAGAATCG 59.196 43.478 0.00 0.00 0.00 3.34
1986 2852 7.498570 ACAAGATCTGAGAAATGGAGATAAAGC 59.501 37.037 0.00 0.00 0.00 3.51
2023 2889 5.243507 TCACCAAACATAACATCAAGCACAT 59.756 36.000 0.00 0.00 0.00 3.21
2170 3099 8.833493 AGTGTGTCCTGTTATAAACTTGTTTAC 58.167 33.333 7.95 0.48 0.00 2.01
2171 3100 8.967664 AGTGTGTCCTGTTATAAACTTGTTTA 57.032 30.769 8.18 8.18 0.00 2.01
2180 3109 9.701098 CTTTGTAGTAAGTGTGTCCTGTTATAA 57.299 33.333 0.00 0.00 0.00 0.98
2246 3182 5.422012 TGCTGACACCAGATTACTCATTCTA 59.578 40.000 0.00 0.00 43.02 2.10
2320 3303 5.213891 TCAGAGATAGTGTTGCTCAAACA 57.786 39.130 0.00 0.00 46.66 2.83
2333 3317 7.600375 TCAAAGCACAAGTTTACTCAGAGATAG 59.400 37.037 3.79 0.00 0.00 2.08
2356 3340 3.581770 CCCATAGCCTGATCTCTGATCAA 59.418 47.826 10.83 0.00 0.00 2.57
2358 3342 2.500910 CCCCATAGCCTGATCTCTGATC 59.499 54.545 0.00 0.98 0.00 2.92
2359 3343 2.158035 ACCCCATAGCCTGATCTCTGAT 60.158 50.000 0.00 0.00 0.00 2.90
2360 3344 1.221523 ACCCCATAGCCTGATCTCTGA 59.778 52.381 0.00 0.00 0.00 3.27
2361 3345 1.622811 GACCCCATAGCCTGATCTCTG 59.377 57.143 0.00 0.00 0.00 3.35
2362 3346 1.221523 TGACCCCATAGCCTGATCTCT 59.778 52.381 0.00 0.00 0.00 3.10
2363 3347 1.722034 TGACCCCATAGCCTGATCTC 58.278 55.000 0.00 0.00 0.00 2.75
2364 3348 1.983691 CATGACCCCATAGCCTGATCT 59.016 52.381 0.00 0.00 0.00 2.75
2387 3371 2.979813 CCGATCTTTCAAAACTTTGCCG 59.020 45.455 0.00 0.00 38.05 5.69
2439 3423 5.628193 GCAAACAATATCATAGCATCTGCAC 59.372 40.000 4.79 0.00 45.16 4.57
2464 3448 0.743097 GAATCCATGCCACAGAAGCC 59.257 55.000 0.00 0.00 0.00 4.35
2545 3529 0.242017 GTGGCACCAGCAAGATTGTC 59.758 55.000 6.29 0.00 44.61 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.