Multiple sequence alignment - TraesCS7B01G017000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G017000 chr7B 100.000 2677 0 0 1 2677 14867519 14864843 0.000000e+00 4944
1 TraesCS7B01G017000 chr7B 85.687 1565 125 53 768 2292 14696763 14698268 0.000000e+00 1557
2 TraesCS7B01G017000 chr7B 95.250 821 34 4 768 1587 14788805 14787989 0.000000e+00 1295
3 TraesCS7B01G017000 chr7B 84.172 1093 113 40 1077 2143 15298372 15299430 0.000000e+00 1005
4 TraesCS7B01G017000 chrUn 89.725 2258 156 33 436 2671 84318432 84316229 0.000000e+00 2815
5 TraesCS7B01G017000 chrUn 88.828 1835 152 31 770 2585 82605354 82603554 0.000000e+00 2204
6 TraesCS7B01G017000 chrUn 88.040 1112 98 20 784 1875 273471155 273470059 0.000000e+00 1284
7 TraesCS7B01G017000 chrUn 89.159 904 67 18 763 1654 82565644 82566528 0.000000e+00 1098
8 TraesCS7B01G017000 chrUn 88.112 858 76 10 791 1645 84331365 84330531 0.000000e+00 996
9 TraesCS7B01G017000 chrUn 83.624 287 42 5 2382 2667 82602351 82602069 5.680000e-67 265
10 TraesCS7B01G017000 chrUn 83.165 297 42 6 2382 2672 84314668 84314374 5.680000e-67 265
11 TraesCS7B01G017000 chrUn 77.637 474 76 20 1827 2286 84330400 84329943 7.350000e-66 261
12 TraesCS7B01G017000 chr7D 87.811 1124 102 20 772 1875 72128190 72129298 0.000000e+00 1284
13 TraesCS7B01G017000 chr7D 88.877 962 85 16 778 1725 71812274 71813227 0.000000e+00 1164
14 TraesCS7B01G017000 chr7D 87.846 1012 81 22 773 1775 71864787 71863809 0.000000e+00 1149
15 TraesCS7B01G017000 chr7D 95.607 478 17 4 2204 2677 71863545 71863068 0.000000e+00 763
16 TraesCS7B01G017000 chr7D 89.015 264 16 6 1878 2138 71863810 71863557 5.560000e-82 315
17 TraesCS7B01G017000 chr7D 83.333 294 42 6 2382 2672 71862003 71861714 5.680000e-67 265
18 TraesCS7B01G017000 chr7D 79.730 370 48 20 2309 2677 72217061 72217404 2.660000e-60 243
19 TraesCS7B01G017000 chr7A 89.171 905 74 13 1073 1973 77150099 77150983 0.000000e+00 1107
20 TraesCS7B01G017000 chr7A 77.996 509 61 26 1759 2250 77195925 77196399 3.400000e-69 272
21 TraesCS7B01G017000 chr5D 86.650 412 40 10 1856 2263 47779944 47779544 2.450000e-120 442
22 TraesCS7B01G017000 chr6B 86.730 211 21 6 1986 2193 141086156 141085950 7.460000e-56 228
23 TraesCS7B01G017000 chr1B 86.730 211 21 6 1986 2193 10931493 10931699 7.460000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G017000 chr7B 14864843 14867519 2676 True 4944.0 4944 100.00000 1 2677 1 chr7B.!!$R2 2676
1 TraesCS7B01G017000 chr7B 14696763 14698268 1505 False 1557.0 1557 85.68700 768 2292 1 chr7B.!!$F1 1524
2 TraesCS7B01G017000 chr7B 14787989 14788805 816 True 1295.0 1295 95.25000 768 1587 1 chr7B.!!$R1 819
3 TraesCS7B01G017000 chr7B 15298372 15299430 1058 False 1005.0 1005 84.17200 1077 2143 1 chr7B.!!$F2 1066
4 TraesCS7B01G017000 chrUn 84314374 84318432 4058 True 1540.0 2815 86.44500 436 2672 2 chrUn.!!$R3 2236
5 TraesCS7B01G017000 chrUn 273470059 273471155 1096 True 1284.0 1284 88.04000 784 1875 1 chrUn.!!$R1 1091
6 TraesCS7B01G017000 chrUn 82602069 82605354 3285 True 1234.5 2204 86.22600 770 2667 2 chrUn.!!$R2 1897
7 TraesCS7B01G017000 chrUn 82565644 82566528 884 False 1098.0 1098 89.15900 763 1654 1 chrUn.!!$F1 891
8 TraesCS7B01G017000 chrUn 84329943 84331365 1422 True 628.5 996 82.87450 791 2286 2 chrUn.!!$R4 1495
9 TraesCS7B01G017000 chr7D 72128190 72129298 1108 False 1284.0 1284 87.81100 772 1875 1 chr7D.!!$F2 1103
10 TraesCS7B01G017000 chr7D 71812274 71813227 953 False 1164.0 1164 88.87700 778 1725 1 chr7D.!!$F1 947
11 TraesCS7B01G017000 chr7D 71861714 71864787 3073 True 623.0 1149 88.95025 773 2677 4 chr7D.!!$R1 1904
12 TraesCS7B01G017000 chr7A 77150099 77150983 884 False 1107.0 1107 89.17100 1073 1973 1 chr7A.!!$F1 900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.108472 CCACATGAGAAGAGCGCAGA 60.108 55.0 11.47 0.0 0.0 4.26 F
125 126 0.175302 ACATGAGAAGAGCGCAGAGG 59.825 55.0 11.47 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1583 0.176680 CCCGGATCACAGGACAAGAG 59.823 60.0 0.73 0.0 33.26 2.85 R
1801 2291 1.662517 TCACACAGCGAGCAAAGAAA 58.337 45.0 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.762360 CGGCATTCTACCGCAAAGA 58.238 52.632 0.00 0.00 44.90 2.52
19 20 0.652592 CGGCATTCTACCGCAAAGAG 59.347 55.000 0.00 0.00 44.90 2.85
20 21 0.378610 GGCATTCTACCGCAAAGAGC 59.621 55.000 0.00 0.00 40.87 4.09
32 33 3.916405 GCAAAGAGCGACAGATAGAAC 57.084 47.619 0.00 0.00 0.00 3.01
33 34 2.605366 GCAAAGAGCGACAGATAGAACC 59.395 50.000 0.00 0.00 0.00 3.62
34 35 3.677424 GCAAAGAGCGACAGATAGAACCT 60.677 47.826 0.00 0.00 0.00 3.50
35 36 4.109050 CAAAGAGCGACAGATAGAACCTC 58.891 47.826 0.00 0.00 0.00 3.85
36 37 2.303175 AGAGCGACAGATAGAACCTCC 58.697 52.381 0.00 0.00 0.00 4.30
37 38 1.338655 GAGCGACAGATAGAACCTCCC 59.661 57.143 0.00 0.00 0.00 4.30
38 39 1.112113 GCGACAGATAGAACCTCCCA 58.888 55.000 0.00 0.00 0.00 4.37
39 40 1.689273 GCGACAGATAGAACCTCCCAT 59.311 52.381 0.00 0.00 0.00 4.00
40 41 2.546795 GCGACAGATAGAACCTCCCATG 60.547 54.545 0.00 0.00 0.00 3.66
41 42 2.959030 CGACAGATAGAACCTCCCATGA 59.041 50.000 0.00 0.00 0.00 3.07
42 43 3.384789 CGACAGATAGAACCTCCCATGAA 59.615 47.826 0.00 0.00 0.00 2.57
43 44 4.500545 CGACAGATAGAACCTCCCATGAAG 60.501 50.000 0.00 0.00 0.00 3.02
44 45 4.624913 ACAGATAGAACCTCCCATGAAGA 58.375 43.478 0.00 0.00 0.00 2.87
45 46 4.653341 ACAGATAGAACCTCCCATGAAGAG 59.347 45.833 0.00 0.00 0.00 2.85
51 52 1.227497 CTCCCATGAAGAGGAGCGC 60.227 63.158 0.00 0.00 43.11 5.92
52 53 1.964608 CTCCCATGAAGAGGAGCGCA 61.965 60.000 11.47 0.00 43.11 6.09
53 54 1.523258 CCCATGAAGAGGAGCGCAG 60.523 63.158 11.47 0.00 0.00 5.18
54 55 1.519246 CCATGAAGAGGAGCGCAGA 59.481 57.895 11.47 0.00 0.00 4.26
55 56 0.530211 CCATGAAGAGGAGCGCAGAG 60.530 60.000 11.47 0.00 0.00 3.35
56 57 0.530211 CATGAAGAGGAGCGCAGAGG 60.530 60.000 11.47 0.00 0.00 3.69
57 58 1.684386 ATGAAGAGGAGCGCAGAGGG 61.684 60.000 11.47 0.00 0.00 4.30
58 59 3.731653 GAAGAGGAGCGCAGAGGGC 62.732 68.421 11.47 0.00 41.91 5.19
98 99 2.847959 CACATTGTGGCAATATGCGA 57.152 45.000 9.00 0.00 46.21 5.10
99 100 2.723209 CACATTGTGGCAATATGCGAG 58.277 47.619 9.00 0.00 46.21 5.03
100 101 1.066002 ACATTGTGGCAATATGCGAGC 59.934 47.619 9.32 0.00 46.21 5.03
101 102 1.335810 CATTGTGGCAATATGCGAGCT 59.664 47.619 0.00 0.00 46.21 4.09
102 103 0.734309 TTGTGGCAATATGCGAGCTG 59.266 50.000 0.00 0.00 46.21 4.24
103 104 1.096967 TGTGGCAATATGCGAGCTGG 61.097 55.000 0.00 0.00 46.21 4.85
104 105 2.188829 TGGCAATATGCGAGCTGGC 61.189 57.895 14.55 14.55 46.21 4.85
105 106 2.641559 GCAATATGCGAGCTGGCC 59.358 61.111 18.69 0.00 31.71 5.36
106 107 2.188829 GCAATATGCGAGCTGGCCA 61.189 57.895 18.69 4.71 31.71 5.36
107 108 1.650912 CAATATGCGAGCTGGCCAC 59.349 57.895 18.69 0.00 0.00 5.01
108 109 1.096967 CAATATGCGAGCTGGCCACA 61.097 55.000 18.69 0.00 0.00 4.17
109 110 0.179009 AATATGCGAGCTGGCCACAT 60.179 50.000 18.69 6.13 0.00 3.21
110 111 0.887836 ATATGCGAGCTGGCCACATG 60.888 55.000 18.69 1.12 0.00 3.21
111 112 1.970352 TATGCGAGCTGGCCACATGA 61.970 55.000 18.69 0.00 0.00 3.07
112 113 3.200593 GCGAGCTGGCCACATGAG 61.201 66.667 9.96 0.00 0.00 2.90
113 114 2.580815 CGAGCTGGCCACATGAGA 59.419 61.111 0.00 0.00 0.00 3.27
114 115 1.078918 CGAGCTGGCCACATGAGAA 60.079 57.895 0.00 0.00 0.00 2.87
115 116 1.088340 CGAGCTGGCCACATGAGAAG 61.088 60.000 0.00 0.00 0.00 2.85
116 117 0.251354 GAGCTGGCCACATGAGAAGA 59.749 55.000 0.00 0.00 0.00 2.87
117 118 0.252479 AGCTGGCCACATGAGAAGAG 59.748 55.000 0.00 0.00 0.00 2.85
118 119 1.375098 GCTGGCCACATGAGAAGAGC 61.375 60.000 0.00 0.00 0.00 4.09
119 120 1.078918 TGGCCACATGAGAAGAGCG 60.079 57.895 0.00 0.00 0.00 5.03
120 121 2.467826 GGCCACATGAGAAGAGCGC 61.468 63.158 0.00 0.00 0.00 5.92
121 122 1.742880 GCCACATGAGAAGAGCGCA 60.743 57.895 11.47 0.00 0.00 6.09
122 123 1.703438 GCCACATGAGAAGAGCGCAG 61.703 60.000 11.47 0.00 0.00 5.18
123 124 0.108472 CCACATGAGAAGAGCGCAGA 60.108 55.000 11.47 0.00 0.00 4.26
124 125 1.279152 CACATGAGAAGAGCGCAGAG 58.721 55.000 11.47 0.00 0.00 3.35
125 126 0.175302 ACATGAGAAGAGCGCAGAGG 59.825 55.000 11.47 0.00 0.00 3.69
126 127 0.530211 CATGAGAAGAGCGCAGAGGG 60.530 60.000 11.47 0.00 0.00 4.30
127 128 1.684386 ATGAGAAGAGCGCAGAGGGG 61.684 60.000 11.47 0.00 0.00 4.79
128 129 2.284258 AGAAGAGCGCAGAGGGGT 60.284 61.111 11.47 0.00 0.00 4.95
129 130 2.125350 GAAGAGCGCAGAGGGGTG 60.125 66.667 11.47 0.00 0.00 4.61
130 131 4.400961 AAGAGCGCAGAGGGGTGC 62.401 66.667 11.47 0.00 44.42 5.01
135 136 3.052082 CGCAGAGGGGTGCTTGTG 61.052 66.667 0.00 0.00 41.62 3.33
136 137 2.674380 GCAGAGGGGTGCTTGTGG 60.674 66.667 0.00 0.00 40.54 4.17
137 138 2.034687 CAGAGGGGTGCTTGTGGG 59.965 66.667 0.00 0.00 0.00 4.61
138 139 3.971702 AGAGGGGTGCTTGTGGGC 61.972 66.667 0.00 0.00 0.00 5.36
139 140 3.971702 GAGGGGTGCTTGTGGGCT 61.972 66.667 0.00 0.00 0.00 5.19
140 141 3.927481 GAGGGGTGCTTGTGGGCTC 62.927 68.421 0.00 0.00 0.00 4.70
142 143 4.284550 GGGTGCTTGTGGGCTCCA 62.285 66.667 9.26 0.00 44.70 3.86
167 168 3.807538 GTGGCACCATGCGAGCTG 61.808 66.667 6.29 0.00 46.21 4.24
174 175 2.827190 CATGCGAGCTGGCCACAT 60.827 61.111 18.69 0.00 0.00 3.21
175 176 2.827190 ATGCGAGCTGGCCACATG 60.827 61.111 18.69 0.00 0.00 3.21
195 196 3.480133 CCCCACGCCCCCTAGAAG 61.480 72.222 0.00 0.00 0.00 2.85
196 197 4.176752 CCCACGCCCCCTAGAAGC 62.177 72.222 0.00 0.00 0.00 3.86
197 198 3.083997 CCACGCCCCCTAGAAGCT 61.084 66.667 0.00 0.00 0.00 3.74
198 199 2.670148 CCACGCCCCCTAGAAGCTT 61.670 63.158 0.00 0.00 0.00 3.74
199 200 1.299976 CACGCCCCCTAGAAGCTTT 59.700 57.895 0.00 0.00 0.00 3.51
200 201 0.322546 CACGCCCCCTAGAAGCTTTT 60.323 55.000 0.00 0.00 0.00 2.27
201 202 1.065709 CACGCCCCCTAGAAGCTTTTA 60.066 52.381 0.00 0.00 0.00 1.52
202 203 1.844497 ACGCCCCCTAGAAGCTTTTAT 59.156 47.619 0.00 0.00 0.00 1.40
203 204 2.222027 CGCCCCCTAGAAGCTTTTATG 58.778 52.381 0.00 0.00 0.00 1.90
204 205 2.421529 CGCCCCCTAGAAGCTTTTATGT 60.422 50.000 0.00 0.00 0.00 2.29
205 206 3.181458 CGCCCCCTAGAAGCTTTTATGTA 60.181 47.826 0.00 0.00 0.00 2.29
206 207 4.505039 CGCCCCCTAGAAGCTTTTATGTAT 60.505 45.833 0.00 0.00 0.00 2.29
207 208 4.762251 GCCCCCTAGAAGCTTTTATGTATG 59.238 45.833 0.00 0.00 0.00 2.39
208 209 5.316987 CCCCCTAGAAGCTTTTATGTATGG 58.683 45.833 0.00 0.00 0.00 2.74
209 210 4.762251 CCCCTAGAAGCTTTTATGTATGGC 59.238 45.833 0.00 0.00 0.00 4.40
210 211 5.456763 CCCCTAGAAGCTTTTATGTATGGCT 60.457 44.000 0.00 0.00 34.52 4.75
211 212 5.471456 CCCTAGAAGCTTTTATGTATGGCTG 59.529 44.000 0.00 0.00 33.30 4.85
212 213 6.058183 CCTAGAAGCTTTTATGTATGGCTGT 58.942 40.000 0.00 0.00 33.30 4.40
213 214 6.543831 CCTAGAAGCTTTTATGTATGGCTGTT 59.456 38.462 0.00 0.00 33.30 3.16
214 215 6.840780 AGAAGCTTTTATGTATGGCTGTTT 57.159 33.333 0.00 0.00 33.30 2.83
215 216 6.856895 AGAAGCTTTTATGTATGGCTGTTTC 58.143 36.000 0.00 0.00 33.30 2.78
216 217 5.582689 AGCTTTTATGTATGGCTGTTTCC 57.417 39.130 0.00 0.00 31.68 3.13
217 218 4.402474 AGCTTTTATGTATGGCTGTTTCCC 59.598 41.667 0.00 0.00 31.68 3.97
218 219 4.402474 GCTTTTATGTATGGCTGTTTCCCT 59.598 41.667 0.00 0.00 0.00 4.20
219 220 5.592688 GCTTTTATGTATGGCTGTTTCCCTA 59.407 40.000 0.00 0.00 0.00 3.53
220 221 6.265422 GCTTTTATGTATGGCTGTTTCCCTAT 59.735 38.462 0.00 0.00 0.00 2.57
221 222 7.581213 TTTTATGTATGGCTGTTTCCCTATG 57.419 36.000 0.00 0.00 0.00 2.23
222 223 6.508030 TTATGTATGGCTGTTTCCCTATGA 57.492 37.500 0.00 0.00 0.00 2.15
223 224 4.853468 TGTATGGCTGTTTCCCTATGAA 57.147 40.909 0.00 0.00 0.00 2.57
224 225 5.387113 TGTATGGCTGTTTCCCTATGAAT 57.613 39.130 0.00 0.00 31.67 2.57
225 226 5.376625 TGTATGGCTGTTTCCCTATGAATC 58.623 41.667 0.00 0.00 31.67 2.52
226 227 4.803329 ATGGCTGTTTCCCTATGAATCT 57.197 40.909 0.00 0.00 31.67 2.40
227 228 4.591321 TGGCTGTTTCCCTATGAATCTT 57.409 40.909 0.00 0.00 31.67 2.40
228 229 4.526970 TGGCTGTTTCCCTATGAATCTTC 58.473 43.478 0.00 0.00 31.67 2.87
229 230 3.885901 GGCTGTTTCCCTATGAATCTTCC 59.114 47.826 0.00 0.00 31.67 3.46
230 231 4.526970 GCTGTTTCCCTATGAATCTTCCA 58.473 43.478 0.00 0.00 31.67 3.53
231 232 4.578105 GCTGTTTCCCTATGAATCTTCCAG 59.422 45.833 0.00 0.00 31.67 3.86
232 233 5.630069 GCTGTTTCCCTATGAATCTTCCAGA 60.630 44.000 0.00 0.00 31.67 3.86
233 234 6.581388 TGTTTCCCTATGAATCTTCCAGAT 57.419 37.500 0.00 0.00 36.28 2.90
234 235 6.359804 TGTTTCCCTATGAATCTTCCAGATG 58.640 40.000 0.00 0.00 34.65 2.90
235 236 6.069440 TGTTTCCCTATGAATCTTCCAGATGT 60.069 38.462 0.00 0.00 34.65 3.06
236 237 7.127186 TGTTTCCCTATGAATCTTCCAGATGTA 59.873 37.037 0.00 0.00 34.65 2.29
237 238 7.878621 TTCCCTATGAATCTTCCAGATGTAT 57.121 36.000 0.00 0.00 34.65 2.29
238 239 7.878621 TCCCTATGAATCTTCCAGATGTATT 57.121 36.000 0.00 0.00 34.65 1.89
239 240 8.280258 TCCCTATGAATCTTCCAGATGTATTT 57.720 34.615 0.00 0.00 34.65 1.40
240 241 8.727149 TCCCTATGAATCTTCCAGATGTATTTT 58.273 33.333 0.00 0.00 34.65 1.82
241 242 9.359653 CCCTATGAATCTTCCAGATGTATTTTT 57.640 33.333 0.00 0.00 34.65 1.94
260 261 5.738619 TTTTTGGGCTTTTCTTAGGGATC 57.261 39.130 0.00 0.00 0.00 3.36
261 262 3.382083 TTGGGCTTTTCTTAGGGATCC 57.618 47.619 1.92 1.92 0.00 3.36
262 263 2.573463 TGGGCTTTTCTTAGGGATCCT 58.427 47.619 12.58 0.00 37.71 3.24
263 264 2.926329 TGGGCTTTTCTTAGGGATCCTT 59.074 45.455 12.58 6.67 34.61 3.36
264 265 3.336694 TGGGCTTTTCTTAGGGATCCTTT 59.663 43.478 12.58 3.00 34.61 3.11
265 266 4.202781 TGGGCTTTTCTTAGGGATCCTTTT 60.203 41.667 12.58 0.30 34.61 2.27
266 267 4.777896 GGGCTTTTCTTAGGGATCCTTTTT 59.222 41.667 12.58 0.00 34.61 1.94
289 290 9.950680 TTTTTGCACAAAAACAACTATTGAAAA 57.049 22.222 15.40 0.00 43.08 2.29
290 291 9.950680 TTTTGCACAAAAACAACTATTGAAAAA 57.049 22.222 6.09 0.00 37.35 1.94
291 292 9.604626 TTTGCACAAAAACAACTATTGAAAAAG 57.395 25.926 0.00 0.00 0.00 2.27
292 293 8.316640 TGCACAAAAACAACTATTGAAAAAGT 57.683 26.923 0.00 0.00 0.00 2.66
293 294 8.439286 TGCACAAAAACAACTATTGAAAAAGTC 58.561 29.630 0.00 0.00 0.00 3.01
294 295 8.655970 GCACAAAAACAACTATTGAAAAAGTCT 58.344 29.630 0.00 0.00 0.00 3.24
295 296 9.956797 CACAAAAACAACTATTGAAAAAGTCTG 57.043 29.630 0.00 0.00 0.00 3.51
296 297 8.655970 ACAAAAACAACTATTGAAAAAGTCTGC 58.344 29.630 0.00 0.00 0.00 4.26
297 298 8.872845 CAAAAACAACTATTGAAAAAGTCTGCT 58.127 29.630 0.00 0.00 0.00 4.24
298 299 7.992180 AAACAACTATTGAAAAAGTCTGCTG 57.008 32.000 0.00 0.00 0.00 4.41
299 300 6.942532 ACAACTATTGAAAAAGTCTGCTGA 57.057 33.333 0.00 0.00 0.00 4.26
300 301 7.333528 ACAACTATTGAAAAAGTCTGCTGAA 57.666 32.000 0.00 0.00 0.00 3.02
301 302 7.771183 ACAACTATTGAAAAAGTCTGCTGAAA 58.229 30.769 0.00 0.00 0.00 2.69
302 303 8.250332 ACAACTATTGAAAAAGTCTGCTGAAAA 58.750 29.630 0.00 0.00 0.00 2.29
303 304 8.534778 CAACTATTGAAAAAGTCTGCTGAAAAC 58.465 33.333 0.00 0.00 0.00 2.43
304 305 7.771183 ACTATTGAAAAAGTCTGCTGAAAACA 58.229 30.769 0.00 0.00 0.00 2.83
305 306 6.892310 ATTGAAAAAGTCTGCTGAAAACAC 57.108 33.333 0.00 0.00 0.00 3.32
306 307 5.384063 TGAAAAAGTCTGCTGAAAACACA 57.616 34.783 0.00 0.00 0.00 3.72
307 308 5.777802 TGAAAAAGTCTGCTGAAAACACAA 58.222 33.333 0.00 0.00 0.00 3.33
308 309 5.633182 TGAAAAAGTCTGCTGAAAACACAAC 59.367 36.000 0.00 0.00 0.00 3.32
309 310 4.782019 AAAGTCTGCTGAAAACACAACA 57.218 36.364 0.00 0.00 0.00 3.33
310 311 4.782019 AAGTCTGCTGAAAACACAACAA 57.218 36.364 0.00 0.00 0.00 2.83
311 312 4.782019 AGTCTGCTGAAAACACAACAAA 57.218 36.364 0.00 0.00 0.00 2.83
312 313 5.132897 AGTCTGCTGAAAACACAACAAAA 57.867 34.783 0.00 0.00 0.00 2.44
313 314 5.163513 AGTCTGCTGAAAACACAACAAAAG 58.836 37.500 0.00 0.00 0.00 2.27
314 315 4.327087 GTCTGCTGAAAACACAACAAAAGG 59.673 41.667 0.00 0.00 0.00 3.11
315 316 3.594134 TGCTGAAAACACAACAAAAGGG 58.406 40.909 0.00 0.00 0.00 3.95
316 317 3.007398 TGCTGAAAACACAACAAAAGGGT 59.993 39.130 0.00 0.00 0.00 4.34
317 318 4.000325 GCTGAAAACACAACAAAAGGGTT 59.000 39.130 0.00 0.00 0.00 4.11
318 319 4.092821 GCTGAAAACACAACAAAAGGGTTC 59.907 41.667 0.00 0.00 0.00 3.62
319 320 4.238514 TGAAAACACAACAAAAGGGTTCG 58.761 39.130 0.00 0.00 0.00 3.95
320 321 2.951457 AACACAACAAAAGGGTTCGG 57.049 45.000 0.00 0.00 0.00 4.30
321 322 2.131776 ACACAACAAAAGGGTTCGGA 57.868 45.000 0.00 0.00 0.00 4.55
322 323 2.448453 ACACAACAAAAGGGTTCGGAA 58.552 42.857 0.00 0.00 0.00 4.30
323 324 2.826725 ACACAACAAAAGGGTTCGGAAA 59.173 40.909 0.00 0.00 0.00 3.13
324 325 3.258622 ACACAACAAAAGGGTTCGGAAAA 59.741 39.130 0.00 0.00 0.00 2.29
325 326 4.246458 CACAACAAAAGGGTTCGGAAAAA 58.754 39.130 0.00 0.00 0.00 1.94
326 327 4.873259 CACAACAAAAGGGTTCGGAAAAAT 59.127 37.500 0.00 0.00 0.00 1.82
327 328 6.043411 CACAACAAAAGGGTTCGGAAAAATA 58.957 36.000 0.00 0.00 0.00 1.40
328 329 6.200097 CACAACAAAAGGGTTCGGAAAAATAG 59.800 38.462 0.00 0.00 0.00 1.73
329 330 6.127281 ACAACAAAAGGGTTCGGAAAAATAGT 60.127 34.615 0.00 0.00 0.00 2.12
330 331 6.474140 ACAAAAGGGTTCGGAAAAATAGTT 57.526 33.333 0.00 0.00 0.00 2.24
331 332 6.277605 ACAAAAGGGTTCGGAAAAATAGTTG 58.722 36.000 0.00 0.00 0.00 3.16
332 333 4.514781 AAGGGTTCGGAAAAATAGTTGC 57.485 40.909 0.00 0.00 0.00 4.17
333 334 3.492337 AGGGTTCGGAAAAATAGTTGCA 58.508 40.909 0.00 0.00 0.00 4.08
334 335 4.086457 AGGGTTCGGAAAAATAGTTGCAT 58.914 39.130 0.00 0.00 0.00 3.96
335 336 4.526650 AGGGTTCGGAAAAATAGTTGCATT 59.473 37.500 0.00 0.00 0.00 3.56
336 337 5.712917 AGGGTTCGGAAAAATAGTTGCATTA 59.287 36.000 0.00 0.00 0.00 1.90
337 338 6.033966 GGGTTCGGAAAAATAGTTGCATTAG 58.966 40.000 0.00 0.00 0.00 1.73
338 339 6.127842 GGGTTCGGAAAAATAGTTGCATTAGA 60.128 38.462 0.00 0.00 0.00 2.10
339 340 6.967199 GGTTCGGAAAAATAGTTGCATTAGAG 59.033 38.462 0.00 0.00 0.00 2.43
340 341 7.361799 GGTTCGGAAAAATAGTTGCATTAGAGT 60.362 37.037 0.00 0.00 0.00 3.24
341 342 7.303634 TCGGAAAAATAGTTGCATTAGAGTC 57.696 36.000 0.00 0.00 0.00 3.36
342 343 6.035650 TCGGAAAAATAGTTGCATTAGAGTCG 59.964 38.462 0.00 0.00 0.00 4.18
343 344 6.183360 CGGAAAAATAGTTGCATTAGAGTCGT 60.183 38.462 0.00 0.00 0.00 4.34
344 345 7.009815 CGGAAAAATAGTTGCATTAGAGTCGTA 59.990 37.037 0.00 0.00 0.00 3.43
345 346 8.827677 GGAAAAATAGTTGCATTAGAGTCGTAT 58.172 33.333 0.00 0.00 0.00 3.06
346 347 9.638300 GAAAAATAGTTGCATTAGAGTCGTATG 57.362 33.333 0.00 3.87 0.00 2.39
347 348 8.942338 AAAATAGTTGCATTAGAGTCGTATGA 57.058 30.769 10.55 0.00 0.00 2.15
348 349 8.942338 AAATAGTTGCATTAGAGTCGTATGAA 57.058 30.769 10.55 0.00 0.00 2.57
349 350 8.942338 AATAGTTGCATTAGAGTCGTATGAAA 57.058 30.769 10.55 4.75 0.00 2.69
350 351 8.942338 ATAGTTGCATTAGAGTCGTATGAAAA 57.058 30.769 10.55 3.22 0.00 2.29
351 352 7.295952 AGTTGCATTAGAGTCGTATGAAAAG 57.704 36.000 10.55 0.00 0.00 2.27
352 353 6.874134 AGTTGCATTAGAGTCGTATGAAAAGT 59.126 34.615 10.55 5.40 0.00 2.66
353 354 7.387948 AGTTGCATTAGAGTCGTATGAAAAGTT 59.612 33.333 10.55 0.00 0.00 2.66
354 355 8.653338 GTTGCATTAGAGTCGTATGAAAAGTTA 58.347 33.333 10.55 0.00 0.00 2.24
355 356 8.407457 TGCATTAGAGTCGTATGAAAAGTTAG 57.593 34.615 10.55 0.00 0.00 2.34
356 357 7.010183 TGCATTAGAGTCGTATGAAAAGTTAGC 59.990 37.037 10.55 0.00 0.00 3.09
357 358 7.516943 GCATTAGAGTCGTATGAAAAGTTAGCC 60.517 40.741 10.55 0.00 0.00 3.93
358 359 4.756502 AGAGTCGTATGAAAAGTTAGCCC 58.243 43.478 0.00 0.00 0.00 5.19
359 360 4.222145 AGAGTCGTATGAAAAGTTAGCCCA 59.778 41.667 0.00 0.00 0.00 5.36
360 361 5.099042 AGTCGTATGAAAAGTTAGCCCAT 57.901 39.130 0.00 0.00 0.00 4.00
361 362 4.876107 AGTCGTATGAAAAGTTAGCCCATG 59.124 41.667 0.00 0.00 0.00 3.66
362 363 4.634443 GTCGTATGAAAAGTTAGCCCATGT 59.366 41.667 0.00 0.00 0.00 3.21
363 364 5.813672 GTCGTATGAAAAGTTAGCCCATGTA 59.186 40.000 0.00 0.00 0.00 2.29
364 365 6.482308 GTCGTATGAAAAGTTAGCCCATGTAT 59.518 38.462 0.00 0.00 0.00 2.29
365 366 7.654520 GTCGTATGAAAAGTTAGCCCATGTATA 59.345 37.037 0.00 0.00 0.00 1.47
366 367 8.372459 TCGTATGAAAAGTTAGCCCATGTATAT 58.628 33.333 0.00 0.00 0.00 0.86
367 368 8.443160 CGTATGAAAAGTTAGCCCATGTATATG 58.557 37.037 0.00 0.00 0.00 1.78
368 369 9.284968 GTATGAAAAGTTAGCCCATGTATATGT 57.715 33.333 0.00 0.00 32.21 2.29
369 370 7.801716 TGAAAAGTTAGCCCATGTATATGTC 57.198 36.000 0.00 0.00 32.21 3.06
370 371 7.573710 TGAAAAGTTAGCCCATGTATATGTCT 58.426 34.615 0.00 0.00 32.21 3.41
371 372 7.715249 TGAAAAGTTAGCCCATGTATATGTCTC 59.285 37.037 0.00 0.00 32.21 3.36
372 373 6.747414 AAGTTAGCCCATGTATATGTCTCA 57.253 37.500 0.00 0.00 32.21 3.27
373 374 6.942163 AGTTAGCCCATGTATATGTCTCAT 57.058 37.500 0.00 0.00 32.21 2.90
374 375 8.435931 AAGTTAGCCCATGTATATGTCTCATA 57.564 34.615 0.00 0.00 32.21 2.15
375 376 7.841956 AGTTAGCCCATGTATATGTCTCATAC 58.158 38.462 0.00 0.00 32.21 2.39
376 377 5.683876 AGCCCATGTATATGTCTCATACC 57.316 43.478 0.00 0.00 32.21 2.73
377 378 4.471386 AGCCCATGTATATGTCTCATACCC 59.529 45.833 0.00 0.00 32.21 3.69
378 379 4.225042 GCCCATGTATATGTCTCATACCCA 59.775 45.833 0.00 0.00 32.21 4.51
379 380 5.734720 CCCATGTATATGTCTCATACCCAC 58.265 45.833 0.00 0.00 32.21 4.61
380 381 5.485353 CCCATGTATATGTCTCATACCCACT 59.515 44.000 0.00 0.00 32.21 4.00
381 382 6.351371 CCCATGTATATGTCTCATACCCACTC 60.351 46.154 0.00 0.00 32.21 3.51
382 383 6.438741 CCATGTATATGTCTCATACCCACTCT 59.561 42.308 0.00 0.00 32.21 3.24
383 384 6.901081 TGTATATGTCTCATACCCACTCTG 57.099 41.667 0.00 0.00 0.00 3.35
384 385 4.881019 ATATGTCTCATACCCACTCTGC 57.119 45.455 0.00 0.00 0.00 4.26
385 386 2.238084 TGTCTCATACCCACTCTGCT 57.762 50.000 0.00 0.00 0.00 4.24
386 387 3.382083 TGTCTCATACCCACTCTGCTA 57.618 47.619 0.00 0.00 0.00 3.49
387 388 3.916035 TGTCTCATACCCACTCTGCTAT 58.084 45.455 0.00 0.00 0.00 2.97
388 389 5.061721 TGTCTCATACCCACTCTGCTATA 57.938 43.478 0.00 0.00 0.00 1.31
389 390 5.645201 TGTCTCATACCCACTCTGCTATAT 58.355 41.667 0.00 0.00 0.00 0.86
390 391 5.712446 TGTCTCATACCCACTCTGCTATATC 59.288 44.000 0.00 0.00 0.00 1.63
391 392 5.712446 GTCTCATACCCACTCTGCTATATCA 59.288 44.000 0.00 0.00 0.00 2.15
392 393 6.209589 GTCTCATACCCACTCTGCTATATCAA 59.790 42.308 0.00 0.00 0.00 2.57
393 394 6.782494 TCTCATACCCACTCTGCTATATCAAA 59.218 38.462 0.00 0.00 0.00 2.69
394 395 7.455953 TCTCATACCCACTCTGCTATATCAAAT 59.544 37.037 0.00 0.00 0.00 2.32
395 396 7.615403 TCATACCCACTCTGCTATATCAAATC 58.385 38.462 0.00 0.00 0.00 2.17
396 397 7.455953 TCATACCCACTCTGCTATATCAAATCT 59.544 37.037 0.00 0.00 0.00 2.40
397 398 6.506538 ACCCACTCTGCTATATCAAATCTT 57.493 37.500 0.00 0.00 0.00 2.40
398 399 6.529220 ACCCACTCTGCTATATCAAATCTTC 58.471 40.000 0.00 0.00 0.00 2.87
399 400 6.100279 ACCCACTCTGCTATATCAAATCTTCA 59.900 38.462 0.00 0.00 0.00 3.02
400 401 7.166851 CCCACTCTGCTATATCAAATCTTCAT 58.833 38.462 0.00 0.00 0.00 2.57
401 402 7.119407 CCCACTCTGCTATATCAAATCTTCATG 59.881 40.741 0.00 0.00 0.00 3.07
402 403 7.361031 CCACTCTGCTATATCAAATCTTCATGC 60.361 40.741 0.00 0.00 0.00 4.06
403 404 7.172703 CACTCTGCTATATCAAATCTTCATGCA 59.827 37.037 0.00 0.00 0.00 3.96
404 405 7.883833 ACTCTGCTATATCAAATCTTCATGCAT 59.116 33.333 0.00 0.00 0.00 3.96
405 406 9.379791 CTCTGCTATATCAAATCTTCATGCATA 57.620 33.333 0.00 0.00 0.00 3.14
406 407 9.159364 TCTGCTATATCAAATCTTCATGCATAC 57.841 33.333 0.00 0.00 0.00 2.39
407 408 8.272545 TGCTATATCAAATCTTCATGCATACC 57.727 34.615 0.00 0.00 0.00 2.73
408 409 7.337689 TGCTATATCAAATCTTCATGCATACCC 59.662 37.037 0.00 0.00 0.00 3.69
409 410 7.337689 GCTATATCAAATCTTCATGCATACCCA 59.662 37.037 0.00 0.00 0.00 4.51
410 411 9.234827 CTATATCAAATCTTCATGCATACCCAA 57.765 33.333 0.00 0.00 0.00 4.12
411 412 5.581126 TCAAATCTTCATGCATACCCAAC 57.419 39.130 0.00 0.00 0.00 3.77
412 413 4.402155 TCAAATCTTCATGCATACCCAACC 59.598 41.667 0.00 0.00 0.00 3.77
413 414 3.668141 ATCTTCATGCATACCCAACCA 57.332 42.857 0.00 0.00 0.00 3.67
414 415 3.003394 TCTTCATGCATACCCAACCAG 57.997 47.619 0.00 0.00 0.00 4.00
415 416 2.308570 TCTTCATGCATACCCAACCAGT 59.691 45.455 0.00 0.00 0.00 4.00
416 417 2.127271 TCATGCATACCCAACCAGTG 57.873 50.000 0.00 0.00 0.00 3.66
417 418 1.354031 TCATGCATACCCAACCAGTGT 59.646 47.619 0.00 0.00 0.00 3.55
418 419 1.745087 CATGCATACCCAACCAGTGTC 59.255 52.381 0.00 0.00 0.00 3.67
419 420 0.767998 TGCATACCCAACCAGTGTCA 59.232 50.000 0.00 0.00 0.00 3.58
420 421 1.165270 GCATACCCAACCAGTGTCAC 58.835 55.000 0.00 0.00 0.00 3.67
421 422 1.544537 GCATACCCAACCAGTGTCACA 60.545 52.381 5.62 0.00 0.00 3.58
422 423 2.879756 GCATACCCAACCAGTGTCACAT 60.880 50.000 5.62 0.00 0.00 3.21
423 424 3.621214 GCATACCCAACCAGTGTCACATA 60.621 47.826 5.62 0.00 0.00 2.29
424 425 4.780815 CATACCCAACCAGTGTCACATAT 58.219 43.478 5.62 0.00 0.00 1.78
425 426 3.806949 ACCCAACCAGTGTCACATATT 57.193 42.857 5.62 0.00 0.00 1.28
426 427 4.919774 ACCCAACCAGTGTCACATATTA 57.080 40.909 5.62 0.00 0.00 0.98
427 428 4.585879 ACCCAACCAGTGTCACATATTAC 58.414 43.478 5.62 0.00 0.00 1.89
428 429 4.042311 ACCCAACCAGTGTCACATATTACA 59.958 41.667 5.62 0.00 0.00 2.41
429 430 5.192927 CCCAACCAGTGTCACATATTACAT 58.807 41.667 5.62 0.00 0.00 2.29
430 431 5.296780 CCCAACCAGTGTCACATATTACATC 59.703 44.000 5.62 0.00 0.00 3.06
431 432 5.879777 CCAACCAGTGTCACATATTACATCA 59.120 40.000 5.62 0.00 0.00 3.07
432 433 6.543465 CCAACCAGTGTCACATATTACATCAT 59.457 38.462 5.62 0.00 0.00 2.45
433 434 7.714813 CCAACCAGTGTCACATATTACATCATA 59.285 37.037 5.62 0.00 0.00 2.15
434 435 9.108284 CAACCAGTGTCACATATTACATCATAA 57.892 33.333 5.62 0.00 0.00 1.90
460 461 2.457598 CTAGCTCCGCCCCTGATTATA 58.542 52.381 0.00 0.00 0.00 0.98
462 463 1.834263 AGCTCCGCCCCTGATTATATC 59.166 52.381 0.00 0.00 0.00 1.63
476 477 9.273016 CCCTGATTATATCGACACTGTATTTTT 57.727 33.333 0.00 0.00 0.00 1.94
504 506 5.298777 AGTGGGACTGTATCGATGTAGTTAC 59.701 44.000 8.54 11.67 0.00 2.50
525 527 3.818773 ACTATGTTTGAGGACCGTTTTGG 59.181 43.478 0.00 0.00 46.41 3.28
531 533 1.226746 GAGGACCGTTTTGGACACAG 58.773 55.000 0.00 0.00 42.00 3.66
537 539 1.380403 CGTTTTGGACACAGCCACCA 61.380 55.000 0.00 0.00 37.75 4.17
538 540 0.820871 GTTTTGGACACAGCCACCAA 59.179 50.000 0.00 0.00 41.12 3.67
664 668 8.495361 TGCTCTAGTAGTAGTATATTGCTAGC 57.505 38.462 8.10 8.10 41.22 3.42
665 669 8.101419 TGCTCTAGTAGTAGTATATTGCTAGCA 58.899 37.037 14.93 14.93 41.22 3.49
666 670 8.609176 GCTCTAGTAGTAGTATATTGCTAGCAG 58.391 40.741 18.45 0.18 41.22 4.24
667 671 8.495361 TCTAGTAGTAGTATATTGCTAGCAGC 57.505 38.462 18.45 7.28 41.22 5.25
705 709 6.676237 TTTGAAATGCCAGAAAAGAAAACC 57.324 33.333 0.00 0.00 0.00 3.27
766 770 7.913674 TCAAAGAAAAAGATAGAAGAGAGCC 57.086 36.000 0.00 0.00 0.00 4.70
1521 1583 1.202428 GCAGTACTGGGTAGTAGCTGC 60.202 57.143 23.95 17.55 45.63 5.25
1602 1681 2.361119 TGTCGTCTGGTCCTATGTATGC 59.639 50.000 0.00 0.00 0.00 3.14
1754 1860 7.512130 TGCAGTGATGGAATTAGAAGATATGT 58.488 34.615 0.00 0.00 0.00 2.29
1796 2286 3.790416 TTGCTGGGGCGCTCTGTTT 62.790 57.895 7.48 0.00 42.25 2.83
1851 2364 2.682155 TGCACGATTGTACAGGCATA 57.318 45.000 0.00 0.00 0.00 3.14
1896 2411 3.622163 GCCTGTCTGATGTGATTCTGAAG 59.378 47.826 0.00 0.00 0.00 3.02
1897 2412 4.829968 CCTGTCTGATGTGATTCTGAAGT 58.170 43.478 0.00 0.00 0.00 3.01
1898 2413 4.869297 CCTGTCTGATGTGATTCTGAAGTC 59.131 45.833 0.00 0.00 0.00 3.01
1899 2414 5.337410 CCTGTCTGATGTGATTCTGAAGTCT 60.337 44.000 0.00 0.00 0.00 3.24
1900 2415 5.476614 TGTCTGATGTGATTCTGAAGTCTG 58.523 41.667 0.00 0.00 0.00 3.51
1901 2416 5.244626 TGTCTGATGTGATTCTGAAGTCTGA 59.755 40.000 0.00 0.00 0.00 3.27
1902 2417 6.162079 GTCTGATGTGATTCTGAAGTCTGAA 58.838 40.000 3.49 3.49 38.01 3.02
1947 2462 3.307762 GGATTAGCTGAAGGTGAAGTGGT 60.308 47.826 0.00 0.00 0.00 4.16
1978 2493 7.496920 TGTGATGTGATTCTGAATTATCTGTCC 59.503 37.037 4.11 0.00 0.00 4.02
2075 2594 5.581085 AGTTCAGTGCTTGGACGTTATATTC 59.419 40.000 0.00 0.00 40.50 1.75
2099 2618 8.378172 TCGGTTAATGATATCATCTTGGAAAC 57.622 34.615 18.44 14.06 35.10 2.78
2113 2632 3.980646 TGGAAACGATTCTTGTGTTGG 57.019 42.857 5.35 0.00 35.79 3.77
2165 2684 5.389859 TCATGATGGTTTTTGTGGATCAC 57.610 39.130 0.00 0.00 34.56 3.06
2200 2719 4.281435 TGACAATTACAGTAGACGGTCCAA 59.719 41.667 4.14 0.00 0.00 3.53
2201 2720 5.046878 TGACAATTACAGTAGACGGTCCAAT 60.047 40.000 4.14 0.00 0.00 3.16
2202 2721 6.153170 TGACAATTACAGTAGACGGTCCAATA 59.847 38.462 4.14 0.00 0.00 1.90
2255 2781 6.922957 TCCATTTGATCAAACAAGTTTACTGC 59.077 34.615 22.71 0.00 32.51 4.40
2256 2782 6.925165 CCATTTGATCAAACAAGTTTACTGCT 59.075 34.615 22.71 0.00 32.51 4.24
2263 2789 4.718940 AACAAGTTTACTGCTTGCAGTT 57.281 36.364 29.37 15.68 45.09 3.16
2265 2791 2.781945 AGTTTACTGCTTGCAGTTGC 57.218 45.000 29.37 19.67 42.50 4.17
2367 2893 3.793465 GCTCTGTGGTTCAGTTTTCTTGC 60.793 47.826 0.00 0.00 43.97 4.01
2368 2894 3.351740 TCTGTGGTTCAGTTTTCTTGCA 58.648 40.909 0.00 0.00 43.97 4.08
2369 2895 3.128589 TCTGTGGTTCAGTTTTCTTGCAC 59.871 43.478 0.00 0.00 43.97 4.57
2370 2896 2.165437 TGTGGTTCAGTTTTCTTGCACC 59.835 45.455 0.00 0.00 0.00 5.01
2371 2897 2.427095 GTGGTTCAGTTTTCTTGCACCT 59.573 45.455 0.00 0.00 0.00 4.00
2372 2898 3.096092 TGGTTCAGTTTTCTTGCACCTT 58.904 40.909 0.00 0.00 0.00 3.50
2373 2899 3.513515 TGGTTCAGTTTTCTTGCACCTTT 59.486 39.130 0.00 0.00 0.00 3.11
2374 2900 4.020662 TGGTTCAGTTTTCTTGCACCTTTT 60.021 37.500 0.00 0.00 0.00 2.27
2375 2901 4.935205 GGTTCAGTTTTCTTGCACCTTTTT 59.065 37.500 0.00 0.00 0.00 1.94
2418 2955 0.690192 TCGACTCATTTGGGCTTCCA 59.310 50.000 0.00 0.00 39.13 3.53
2572 3109 8.055790 TGGTCTACTTCATCTCTATTTCTCAGA 58.944 37.037 0.00 0.00 0.00 3.27
2648 5229 4.858850 TGGGAATGATTCTTGTGCTGTAT 58.141 39.130 5.03 0.00 0.00 2.29
2676 5257 8.954950 TTTTTGGTTGTGATTGTTCATATGTT 57.045 26.923 1.90 0.00 33.56 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.378610 GCTCTTTGCGGTAGAATGCC 59.621 55.000 0.00 0.00 37.59 4.40
2 3 3.905900 GCTCTTTGCGGTAGAATGC 57.094 52.632 0.00 0.00 0.00 3.56
12 13 2.605366 GGTTCTATCTGTCGCTCTTTGC 59.395 50.000 0.00 0.00 38.57 3.68
13 14 4.109050 GAGGTTCTATCTGTCGCTCTTTG 58.891 47.826 0.00 0.00 0.00 2.77
14 15 3.131400 GGAGGTTCTATCTGTCGCTCTTT 59.869 47.826 0.00 0.00 0.00 2.52
15 16 2.691011 GGAGGTTCTATCTGTCGCTCTT 59.309 50.000 0.00 0.00 0.00 2.85
16 17 2.303175 GGAGGTTCTATCTGTCGCTCT 58.697 52.381 0.00 0.00 0.00 4.09
17 18 1.338655 GGGAGGTTCTATCTGTCGCTC 59.661 57.143 0.00 0.00 0.00 5.03
18 19 1.342076 TGGGAGGTTCTATCTGTCGCT 60.342 52.381 0.00 0.00 0.00 4.93
19 20 1.112113 TGGGAGGTTCTATCTGTCGC 58.888 55.000 0.00 0.00 0.00 5.19
20 21 2.959030 TCATGGGAGGTTCTATCTGTCG 59.041 50.000 0.00 0.00 0.00 4.35
21 22 4.651503 TCTTCATGGGAGGTTCTATCTGTC 59.348 45.833 0.00 0.00 0.00 3.51
22 23 4.624913 TCTTCATGGGAGGTTCTATCTGT 58.375 43.478 0.00 0.00 0.00 3.41
23 24 4.040217 CCTCTTCATGGGAGGTTCTATCTG 59.960 50.000 20.33 0.90 43.77 2.90
24 25 4.230455 CCTCTTCATGGGAGGTTCTATCT 58.770 47.826 20.33 0.00 43.77 1.98
25 26 4.615588 CCTCTTCATGGGAGGTTCTATC 57.384 50.000 20.33 0.00 43.77 2.08
34 35 1.964608 CTGCGCTCCTCTTCATGGGA 61.965 60.000 9.73 0.00 0.00 4.37
35 36 1.523258 CTGCGCTCCTCTTCATGGG 60.523 63.158 9.73 0.00 0.00 4.00
36 37 0.530211 CTCTGCGCTCCTCTTCATGG 60.530 60.000 9.73 0.00 0.00 3.66
37 38 0.530211 CCTCTGCGCTCCTCTTCATG 60.530 60.000 9.73 0.00 0.00 3.07
38 39 1.684386 CCCTCTGCGCTCCTCTTCAT 61.684 60.000 9.73 0.00 0.00 2.57
39 40 2.354401 CCCTCTGCGCTCCTCTTCA 61.354 63.158 9.73 0.00 0.00 3.02
40 41 2.498726 CCCTCTGCGCTCCTCTTC 59.501 66.667 9.73 0.00 0.00 2.87
41 42 3.780173 GCCCTCTGCGCTCCTCTT 61.780 66.667 9.73 0.00 0.00 2.85
79 80 2.723209 CTCGCATATTGCCACAATGTG 58.277 47.619 6.37 6.37 41.12 3.21
80 81 1.066002 GCTCGCATATTGCCACAATGT 59.934 47.619 3.11 0.00 41.12 2.71
81 82 1.335810 AGCTCGCATATTGCCACAATG 59.664 47.619 3.11 0.00 41.12 2.82
82 83 1.335810 CAGCTCGCATATTGCCACAAT 59.664 47.619 0.00 0.00 41.12 2.71
83 84 0.734309 CAGCTCGCATATTGCCACAA 59.266 50.000 0.00 0.00 41.12 3.33
84 85 1.096967 CCAGCTCGCATATTGCCACA 61.097 55.000 0.00 0.00 41.12 4.17
85 86 1.650912 CCAGCTCGCATATTGCCAC 59.349 57.895 0.00 0.00 41.12 5.01
86 87 2.188829 GCCAGCTCGCATATTGCCA 61.189 57.895 0.00 0.00 41.12 4.92
87 88 2.641559 GCCAGCTCGCATATTGCC 59.358 61.111 0.00 0.00 41.12 4.52
88 89 2.188829 TGGCCAGCTCGCATATTGC 61.189 57.895 0.00 0.00 40.69 3.56
89 90 1.096967 TGTGGCCAGCTCGCATATTG 61.097 55.000 5.11 0.00 0.00 1.90
90 91 0.179009 ATGTGGCCAGCTCGCATATT 60.179 50.000 5.11 0.00 34.09 1.28
91 92 0.887836 CATGTGGCCAGCTCGCATAT 60.888 55.000 5.11 0.00 34.09 1.78
92 93 1.524393 CATGTGGCCAGCTCGCATA 60.524 57.895 5.11 0.00 34.09 3.14
93 94 2.827190 CATGTGGCCAGCTCGCAT 60.827 61.111 5.11 1.95 35.96 4.73
94 95 3.963687 CTCATGTGGCCAGCTCGCA 62.964 63.158 5.11 0.00 0.00 5.10
95 96 3.200593 CTCATGTGGCCAGCTCGC 61.201 66.667 5.11 0.00 0.00 5.03
96 97 1.078918 TTCTCATGTGGCCAGCTCG 60.079 57.895 5.11 0.00 0.00 5.03
97 98 0.251354 TCTTCTCATGTGGCCAGCTC 59.749 55.000 5.11 0.00 0.00 4.09
98 99 0.252479 CTCTTCTCATGTGGCCAGCT 59.748 55.000 5.11 0.00 0.00 4.24
99 100 1.375098 GCTCTTCTCATGTGGCCAGC 61.375 60.000 5.11 1.20 0.00 4.85
100 101 1.088340 CGCTCTTCTCATGTGGCCAG 61.088 60.000 5.11 0.00 0.00 4.85
101 102 1.078918 CGCTCTTCTCATGTGGCCA 60.079 57.895 0.00 0.00 0.00 5.36
102 103 2.467826 GCGCTCTTCTCATGTGGCC 61.468 63.158 0.00 0.00 0.00 5.36
103 104 1.703438 CTGCGCTCTTCTCATGTGGC 61.703 60.000 9.73 0.00 0.00 5.01
104 105 0.108472 TCTGCGCTCTTCTCATGTGG 60.108 55.000 9.73 0.00 0.00 4.17
105 106 1.279152 CTCTGCGCTCTTCTCATGTG 58.721 55.000 9.73 0.00 0.00 3.21
106 107 0.175302 CCTCTGCGCTCTTCTCATGT 59.825 55.000 9.73 0.00 0.00 3.21
107 108 0.530211 CCCTCTGCGCTCTTCTCATG 60.530 60.000 9.73 0.00 0.00 3.07
108 109 1.684386 CCCCTCTGCGCTCTTCTCAT 61.684 60.000 9.73 0.00 0.00 2.90
109 110 2.354401 CCCCTCTGCGCTCTTCTCA 61.354 63.158 9.73 0.00 0.00 3.27
110 111 2.355193 ACCCCTCTGCGCTCTTCTC 61.355 63.158 9.73 0.00 0.00 2.87
111 112 2.284258 ACCCCTCTGCGCTCTTCT 60.284 61.111 9.73 0.00 0.00 2.85
112 113 2.125350 CACCCCTCTGCGCTCTTC 60.125 66.667 9.73 0.00 0.00 2.87
113 114 4.400961 GCACCCCTCTGCGCTCTT 62.401 66.667 9.73 0.00 0.00 2.85
115 116 4.400961 AAGCACCCCTCTGCGCTC 62.401 66.667 9.73 0.00 42.42 5.03
116 117 4.711949 CAAGCACCCCTCTGCGCT 62.712 66.667 9.73 0.00 42.42 5.92
118 119 3.052082 CACAAGCACCCCTCTGCG 61.052 66.667 0.00 0.00 42.42 5.18
119 120 2.674380 CCACAAGCACCCCTCTGC 60.674 66.667 0.00 0.00 37.44 4.26
120 121 2.034687 CCCACAAGCACCCCTCTG 59.965 66.667 0.00 0.00 0.00 3.35
121 122 3.971702 GCCCACAAGCACCCCTCT 61.972 66.667 0.00 0.00 0.00 3.69
122 123 3.927481 GAGCCCACAAGCACCCCTC 62.927 68.421 0.00 0.00 34.23 4.30
123 124 3.971702 GAGCCCACAAGCACCCCT 61.972 66.667 0.00 0.00 34.23 4.79
125 126 4.284550 TGGAGCCCACAAGCACCC 62.285 66.667 0.00 0.00 42.26 4.61
141 142 3.853404 TGGTGCCACCACAATGTG 58.147 55.556 13.83 6.37 44.79 3.21
150 151 3.807538 CAGCTCGCATGGTGCCAC 61.808 66.667 0.00 0.00 41.12 5.01
157 158 2.827190 ATGTGGCCAGCTCGCATG 60.827 61.111 5.11 0.00 34.50 4.06
158 159 2.827190 CATGTGGCCAGCTCGCAT 60.827 61.111 5.11 1.95 35.96 4.73
178 179 3.480133 CTTCTAGGGGGCGTGGGG 61.480 72.222 0.00 0.00 0.00 4.96
179 180 4.176752 GCTTCTAGGGGGCGTGGG 62.177 72.222 0.00 0.00 0.00 4.61
180 181 2.198304 AAAGCTTCTAGGGGGCGTGG 62.198 60.000 0.00 0.00 0.00 4.94
181 182 0.322546 AAAAGCTTCTAGGGGGCGTG 60.323 55.000 0.00 0.00 0.00 5.34
182 183 1.282382 TAAAAGCTTCTAGGGGGCGT 58.718 50.000 0.00 0.00 0.00 5.68
183 184 2.222027 CATAAAAGCTTCTAGGGGGCG 58.778 52.381 0.00 0.00 0.00 6.13
184 185 3.298686 ACATAAAAGCTTCTAGGGGGC 57.701 47.619 0.00 0.00 0.00 5.80
185 186 5.316987 CCATACATAAAAGCTTCTAGGGGG 58.683 45.833 0.00 0.00 0.00 5.40
186 187 4.762251 GCCATACATAAAAGCTTCTAGGGG 59.238 45.833 0.00 0.00 0.00 4.79
187 188 5.471456 CAGCCATACATAAAAGCTTCTAGGG 59.529 44.000 0.00 0.00 0.00 3.53
188 189 6.058183 ACAGCCATACATAAAAGCTTCTAGG 58.942 40.000 0.00 0.00 0.00 3.02
189 190 7.559590 AACAGCCATACATAAAAGCTTCTAG 57.440 36.000 0.00 0.00 0.00 2.43
190 191 7.067008 GGAAACAGCCATACATAAAAGCTTCTA 59.933 37.037 0.00 0.00 0.00 2.10
191 192 6.127619 GGAAACAGCCATACATAAAAGCTTCT 60.128 38.462 0.00 0.00 0.00 2.85
192 193 6.036470 GGAAACAGCCATACATAAAAGCTTC 58.964 40.000 0.00 0.00 0.00 3.86
193 194 5.105351 GGGAAACAGCCATACATAAAAGCTT 60.105 40.000 0.00 0.00 0.00 3.74
194 195 4.402474 GGGAAACAGCCATACATAAAAGCT 59.598 41.667 0.00 0.00 0.00 3.74
195 196 4.402474 AGGGAAACAGCCATACATAAAAGC 59.598 41.667 0.00 0.00 0.00 3.51
196 197 7.502226 TCATAGGGAAACAGCCATACATAAAAG 59.498 37.037 0.00 0.00 0.00 2.27
197 198 7.350382 TCATAGGGAAACAGCCATACATAAAA 58.650 34.615 0.00 0.00 0.00 1.52
198 199 6.905736 TCATAGGGAAACAGCCATACATAAA 58.094 36.000 0.00 0.00 0.00 1.40
199 200 6.508030 TCATAGGGAAACAGCCATACATAA 57.492 37.500 0.00 0.00 0.00 1.90
200 201 6.508030 TTCATAGGGAAACAGCCATACATA 57.492 37.500 0.00 0.00 30.98 2.29
201 202 5.387113 TTCATAGGGAAACAGCCATACAT 57.613 39.130 0.00 0.00 30.98 2.29
202 203 4.853468 TTCATAGGGAAACAGCCATACA 57.147 40.909 0.00 0.00 30.98 2.29
203 204 5.625150 AGATTCATAGGGAAACAGCCATAC 58.375 41.667 0.00 0.00 39.39 2.39
204 205 5.912149 AGATTCATAGGGAAACAGCCATA 57.088 39.130 0.00 0.00 39.39 2.74
205 206 4.803329 AGATTCATAGGGAAACAGCCAT 57.197 40.909 0.00 0.00 39.39 4.40
206 207 4.526970 GAAGATTCATAGGGAAACAGCCA 58.473 43.478 0.00 0.00 39.39 4.75
207 208 3.885901 GGAAGATTCATAGGGAAACAGCC 59.114 47.826 0.00 0.00 39.39 4.85
208 209 4.526970 TGGAAGATTCATAGGGAAACAGC 58.473 43.478 0.00 0.00 39.39 4.40
209 210 5.994250 TCTGGAAGATTCATAGGGAAACAG 58.006 41.667 0.00 0.00 38.67 3.16
238 239 4.530553 GGATCCCTAAGAAAAGCCCAAAAA 59.469 41.667 0.00 0.00 0.00 1.94
239 240 4.093743 GGATCCCTAAGAAAAGCCCAAAA 58.906 43.478 0.00 0.00 0.00 2.44
240 241 3.336694 AGGATCCCTAAGAAAAGCCCAAA 59.663 43.478 8.55 0.00 28.47 3.28
241 242 2.926329 AGGATCCCTAAGAAAAGCCCAA 59.074 45.455 8.55 0.00 28.47 4.12
242 243 2.573463 AGGATCCCTAAGAAAAGCCCA 58.427 47.619 8.55 0.00 28.47 5.36
243 244 3.671740 AAGGATCCCTAAGAAAAGCCC 57.328 47.619 8.55 0.00 31.13 5.19
263 264 9.950680 TTTTCAATAGTTGTTTTTGTGCAAAAA 57.049 22.222 16.08 16.08 43.69 1.94
264 265 9.950680 TTTTTCAATAGTTGTTTTTGTGCAAAA 57.049 22.222 6.04 6.04 38.40 2.44
265 266 9.604626 CTTTTTCAATAGTTGTTTTTGTGCAAA 57.395 25.926 0.00 0.00 0.00 3.68
266 267 8.778358 ACTTTTTCAATAGTTGTTTTTGTGCAA 58.222 25.926 0.00 0.00 0.00 4.08
267 268 8.316640 ACTTTTTCAATAGTTGTTTTTGTGCA 57.683 26.923 0.00 0.00 0.00 4.57
268 269 8.655970 AGACTTTTTCAATAGTTGTTTTTGTGC 58.344 29.630 0.00 0.00 0.00 4.57
269 270 9.956797 CAGACTTTTTCAATAGTTGTTTTTGTG 57.043 29.630 0.00 0.00 0.00 3.33
270 271 8.655970 GCAGACTTTTTCAATAGTTGTTTTTGT 58.344 29.630 0.00 0.00 0.00 2.83
271 272 8.872845 AGCAGACTTTTTCAATAGTTGTTTTTG 58.127 29.630 0.00 0.00 0.00 2.44
272 273 8.872845 CAGCAGACTTTTTCAATAGTTGTTTTT 58.127 29.630 0.00 0.00 0.00 1.94
273 274 8.250332 TCAGCAGACTTTTTCAATAGTTGTTTT 58.750 29.630 0.00 0.00 0.00 2.43
274 275 7.771183 TCAGCAGACTTTTTCAATAGTTGTTT 58.229 30.769 0.00 0.00 0.00 2.83
275 276 7.333528 TCAGCAGACTTTTTCAATAGTTGTT 57.666 32.000 0.00 0.00 0.00 2.83
276 277 6.942532 TCAGCAGACTTTTTCAATAGTTGT 57.057 33.333 0.00 0.00 0.00 3.32
277 278 8.534778 GTTTTCAGCAGACTTTTTCAATAGTTG 58.465 33.333 0.00 0.00 0.00 3.16
278 279 8.250332 TGTTTTCAGCAGACTTTTTCAATAGTT 58.750 29.630 0.00 0.00 0.00 2.24
279 280 7.702348 GTGTTTTCAGCAGACTTTTTCAATAGT 59.298 33.333 0.00 0.00 0.00 2.12
280 281 7.701924 TGTGTTTTCAGCAGACTTTTTCAATAG 59.298 33.333 0.00 0.00 0.00 1.73
281 282 7.542890 TGTGTTTTCAGCAGACTTTTTCAATA 58.457 30.769 0.00 0.00 0.00 1.90
282 283 6.397272 TGTGTTTTCAGCAGACTTTTTCAAT 58.603 32.000 0.00 0.00 0.00 2.57
283 284 5.777802 TGTGTTTTCAGCAGACTTTTTCAA 58.222 33.333 0.00 0.00 0.00 2.69
284 285 5.384063 TGTGTTTTCAGCAGACTTTTTCA 57.616 34.783 0.00 0.00 0.00 2.69
285 286 5.633182 TGTTGTGTTTTCAGCAGACTTTTTC 59.367 36.000 0.00 0.00 0.00 2.29
286 287 5.537188 TGTTGTGTTTTCAGCAGACTTTTT 58.463 33.333 0.00 0.00 0.00 1.94
287 288 5.132897 TGTTGTGTTTTCAGCAGACTTTT 57.867 34.783 0.00 0.00 0.00 2.27
288 289 4.782019 TGTTGTGTTTTCAGCAGACTTT 57.218 36.364 0.00 0.00 0.00 2.66
289 290 4.782019 TTGTTGTGTTTTCAGCAGACTT 57.218 36.364 0.00 0.00 31.01 3.01
290 291 4.782019 TTTGTTGTGTTTTCAGCAGACT 57.218 36.364 0.00 0.00 31.01 3.24
291 292 4.327087 CCTTTTGTTGTGTTTTCAGCAGAC 59.673 41.667 0.00 0.00 31.01 3.51
292 293 4.493547 CCTTTTGTTGTGTTTTCAGCAGA 58.506 39.130 0.00 0.00 31.01 4.26
293 294 3.618150 CCCTTTTGTTGTGTTTTCAGCAG 59.382 43.478 0.00 0.00 31.01 4.24
294 295 3.007398 ACCCTTTTGTTGTGTTTTCAGCA 59.993 39.130 0.00 0.00 0.00 4.41
295 296 3.595173 ACCCTTTTGTTGTGTTTTCAGC 58.405 40.909 0.00 0.00 0.00 4.26
296 297 4.326009 CGAACCCTTTTGTTGTGTTTTCAG 59.674 41.667 0.00 0.00 0.00 3.02
297 298 4.238514 CGAACCCTTTTGTTGTGTTTTCA 58.761 39.130 0.00 0.00 0.00 2.69
298 299 3.615056 CCGAACCCTTTTGTTGTGTTTTC 59.385 43.478 0.00 0.00 0.00 2.29
299 300 3.258622 TCCGAACCCTTTTGTTGTGTTTT 59.741 39.130 0.00 0.00 0.00 2.43
300 301 2.826725 TCCGAACCCTTTTGTTGTGTTT 59.173 40.909 0.00 0.00 0.00 2.83
301 302 2.448453 TCCGAACCCTTTTGTTGTGTT 58.552 42.857 0.00 0.00 0.00 3.32
302 303 2.131776 TCCGAACCCTTTTGTTGTGT 57.868 45.000 0.00 0.00 0.00 3.72
303 304 3.512033 TTTCCGAACCCTTTTGTTGTG 57.488 42.857 0.00 0.00 0.00 3.33
304 305 4.538746 TTTTTCCGAACCCTTTTGTTGT 57.461 36.364 0.00 0.00 0.00 3.32
305 306 6.277605 ACTATTTTTCCGAACCCTTTTGTTG 58.722 36.000 0.00 0.00 0.00 3.33
306 307 6.474140 ACTATTTTTCCGAACCCTTTTGTT 57.526 33.333 0.00 0.00 0.00 2.83
307 308 6.277605 CAACTATTTTTCCGAACCCTTTTGT 58.722 36.000 0.00 0.00 0.00 2.83
308 309 5.176774 GCAACTATTTTTCCGAACCCTTTTG 59.823 40.000 0.00 0.00 0.00 2.44
309 310 5.163395 TGCAACTATTTTTCCGAACCCTTTT 60.163 36.000 0.00 0.00 0.00 2.27
310 311 4.342665 TGCAACTATTTTTCCGAACCCTTT 59.657 37.500 0.00 0.00 0.00 3.11
311 312 3.892588 TGCAACTATTTTTCCGAACCCTT 59.107 39.130 0.00 0.00 0.00 3.95
312 313 3.492337 TGCAACTATTTTTCCGAACCCT 58.508 40.909 0.00 0.00 0.00 4.34
313 314 3.926821 TGCAACTATTTTTCCGAACCC 57.073 42.857 0.00 0.00 0.00 4.11
314 315 6.848451 TCTAATGCAACTATTTTTCCGAACC 58.152 36.000 0.00 0.00 0.00 3.62
315 316 7.527457 ACTCTAATGCAACTATTTTTCCGAAC 58.473 34.615 0.00 0.00 0.00 3.95
316 317 7.412563 CGACTCTAATGCAACTATTTTTCCGAA 60.413 37.037 0.00 0.00 0.00 4.30
317 318 6.035650 CGACTCTAATGCAACTATTTTTCCGA 59.964 38.462 0.00 0.00 0.00 4.55
318 319 6.183360 ACGACTCTAATGCAACTATTTTTCCG 60.183 38.462 0.00 0.00 0.00 4.30
319 320 7.073342 ACGACTCTAATGCAACTATTTTTCC 57.927 36.000 0.00 0.00 0.00 3.13
320 321 9.638300 CATACGACTCTAATGCAACTATTTTTC 57.362 33.333 0.00 0.00 0.00 2.29
321 322 9.378551 TCATACGACTCTAATGCAACTATTTTT 57.621 29.630 0.00 0.00 0.00 1.94
322 323 8.942338 TCATACGACTCTAATGCAACTATTTT 57.058 30.769 0.00 0.00 0.00 1.82
323 324 8.942338 TTCATACGACTCTAATGCAACTATTT 57.058 30.769 0.00 0.00 0.00 1.40
324 325 8.942338 TTTCATACGACTCTAATGCAACTATT 57.058 30.769 0.00 0.00 0.00 1.73
325 326 8.942338 TTTTCATACGACTCTAATGCAACTAT 57.058 30.769 0.00 0.00 0.00 2.12
326 327 8.033038 ACTTTTCATACGACTCTAATGCAACTA 58.967 33.333 0.00 0.00 0.00 2.24
327 328 6.874134 ACTTTTCATACGACTCTAATGCAACT 59.126 34.615 0.00 0.00 0.00 3.16
328 329 7.061752 ACTTTTCATACGACTCTAATGCAAC 57.938 36.000 0.00 0.00 0.00 4.17
329 330 7.667043 AACTTTTCATACGACTCTAATGCAA 57.333 32.000 0.00 0.00 0.00 4.08
330 331 7.010183 GCTAACTTTTCATACGACTCTAATGCA 59.990 37.037 0.00 0.00 0.00 3.96
331 332 7.338462 GCTAACTTTTCATACGACTCTAATGC 58.662 38.462 0.00 0.00 0.00 3.56
332 333 7.042658 GGGCTAACTTTTCATACGACTCTAATG 60.043 40.741 0.00 0.00 0.00 1.90
333 334 6.985059 GGGCTAACTTTTCATACGACTCTAAT 59.015 38.462 0.00 0.00 0.00 1.73
334 335 6.071221 TGGGCTAACTTTTCATACGACTCTAA 60.071 38.462 0.00 0.00 0.00 2.10
335 336 5.419788 TGGGCTAACTTTTCATACGACTCTA 59.580 40.000 0.00 0.00 0.00 2.43
336 337 4.222145 TGGGCTAACTTTTCATACGACTCT 59.778 41.667 0.00 0.00 0.00 3.24
337 338 4.501071 TGGGCTAACTTTTCATACGACTC 58.499 43.478 0.00 0.00 0.00 3.36
338 339 4.546829 TGGGCTAACTTTTCATACGACT 57.453 40.909 0.00 0.00 0.00 4.18
339 340 4.634443 ACATGGGCTAACTTTTCATACGAC 59.366 41.667 0.00 0.00 0.00 4.34
340 341 4.839121 ACATGGGCTAACTTTTCATACGA 58.161 39.130 0.00 0.00 0.00 3.43
341 342 6.861065 ATACATGGGCTAACTTTTCATACG 57.139 37.500 0.00 0.00 0.00 3.06
342 343 9.284968 ACATATACATGGGCTAACTTTTCATAC 57.715 33.333 0.00 0.00 36.39 2.39
343 344 9.502091 GACATATACATGGGCTAACTTTTCATA 57.498 33.333 0.00 0.00 36.39 2.15
344 345 8.220559 AGACATATACATGGGCTAACTTTTCAT 58.779 33.333 0.00 0.00 36.39 2.57
345 346 7.573710 AGACATATACATGGGCTAACTTTTCA 58.426 34.615 0.00 0.00 36.39 2.69
346 347 7.715249 TGAGACATATACATGGGCTAACTTTTC 59.285 37.037 0.00 0.00 36.39 2.29
347 348 7.573710 TGAGACATATACATGGGCTAACTTTT 58.426 34.615 0.00 0.00 36.39 2.27
348 349 7.136822 TGAGACATATACATGGGCTAACTTT 57.863 36.000 0.00 0.00 36.39 2.66
349 350 6.747414 TGAGACATATACATGGGCTAACTT 57.253 37.500 0.00 0.00 36.39 2.66
350 351 6.942163 ATGAGACATATACATGGGCTAACT 57.058 37.500 0.00 0.00 36.39 2.24
351 352 7.042335 GGTATGAGACATATACATGGGCTAAC 58.958 42.308 0.00 0.00 36.39 2.34
352 353 6.156256 GGGTATGAGACATATACATGGGCTAA 59.844 42.308 0.00 0.00 36.39 3.09
353 354 5.661312 GGGTATGAGACATATACATGGGCTA 59.339 44.000 0.00 0.00 36.39 3.93
354 355 4.471386 GGGTATGAGACATATACATGGGCT 59.529 45.833 0.00 0.00 36.39 5.19
355 356 4.225042 TGGGTATGAGACATATACATGGGC 59.775 45.833 0.00 0.00 36.39 5.36
356 357 5.485353 AGTGGGTATGAGACATATACATGGG 59.515 44.000 0.00 0.00 36.39 4.00
357 358 6.438741 AGAGTGGGTATGAGACATATACATGG 59.561 42.308 0.00 0.00 36.39 3.66
358 359 7.318893 CAGAGTGGGTATGAGACATATACATG 58.681 42.308 0.00 0.00 38.21 3.21
359 360 6.071108 GCAGAGTGGGTATGAGACATATACAT 60.071 42.308 0.00 0.00 33.66 2.29
360 361 5.243954 GCAGAGTGGGTATGAGACATATACA 59.756 44.000 0.00 0.00 33.66 2.29
361 362 5.478679 AGCAGAGTGGGTATGAGACATATAC 59.521 44.000 0.00 0.00 0.00 1.47
362 363 5.645201 AGCAGAGTGGGTATGAGACATATA 58.355 41.667 0.00 0.00 0.00 0.86
363 364 4.487804 AGCAGAGTGGGTATGAGACATAT 58.512 43.478 0.00 0.00 0.00 1.78
364 365 3.916035 AGCAGAGTGGGTATGAGACATA 58.084 45.455 0.00 0.00 0.00 2.29
365 366 2.756907 AGCAGAGTGGGTATGAGACAT 58.243 47.619 0.00 0.00 0.00 3.06
366 367 2.238084 AGCAGAGTGGGTATGAGACA 57.762 50.000 0.00 0.00 0.00 3.41
367 368 5.712446 TGATATAGCAGAGTGGGTATGAGAC 59.288 44.000 0.00 0.00 33.77 3.36
368 369 5.892348 TGATATAGCAGAGTGGGTATGAGA 58.108 41.667 0.00 0.00 33.77 3.27
369 370 6.596309 TTGATATAGCAGAGTGGGTATGAG 57.404 41.667 0.00 0.00 33.77 2.90
370 371 6.994421 TTTGATATAGCAGAGTGGGTATGA 57.006 37.500 0.00 0.00 33.77 2.15
371 372 7.619050 AGATTTGATATAGCAGAGTGGGTATG 58.381 38.462 0.00 0.00 33.77 2.39
372 373 7.805083 AGATTTGATATAGCAGAGTGGGTAT 57.195 36.000 0.00 0.00 35.74 2.73
373 374 7.290014 TGAAGATTTGATATAGCAGAGTGGGTA 59.710 37.037 0.00 0.00 0.00 3.69
374 375 6.100279 TGAAGATTTGATATAGCAGAGTGGGT 59.900 38.462 0.00 0.00 0.00 4.51
375 376 6.528321 TGAAGATTTGATATAGCAGAGTGGG 58.472 40.000 0.00 0.00 0.00 4.61
376 377 7.361031 GCATGAAGATTTGATATAGCAGAGTGG 60.361 40.741 0.00 0.00 0.00 4.00
377 378 7.172703 TGCATGAAGATTTGATATAGCAGAGTG 59.827 37.037 0.00 0.00 0.00 3.51
378 379 7.222161 TGCATGAAGATTTGATATAGCAGAGT 58.778 34.615 0.00 0.00 0.00 3.24
379 380 7.668525 TGCATGAAGATTTGATATAGCAGAG 57.331 36.000 0.00 0.00 0.00 3.35
380 381 9.159364 GTATGCATGAAGATTTGATATAGCAGA 57.841 33.333 10.16 0.00 0.00 4.26
381 382 8.396390 GGTATGCATGAAGATTTGATATAGCAG 58.604 37.037 10.16 0.00 0.00 4.24
382 383 7.337689 GGGTATGCATGAAGATTTGATATAGCA 59.662 37.037 10.16 0.00 0.00 3.49
383 384 7.337689 TGGGTATGCATGAAGATTTGATATAGC 59.662 37.037 10.16 0.00 0.00 2.97
384 385 8.797350 TGGGTATGCATGAAGATTTGATATAG 57.203 34.615 10.16 0.00 0.00 1.31
385 386 9.013229 GTTGGGTATGCATGAAGATTTGATATA 57.987 33.333 10.16 0.00 0.00 0.86
386 387 7.039504 GGTTGGGTATGCATGAAGATTTGATAT 60.040 37.037 10.16 0.00 0.00 1.63
387 388 6.265196 GGTTGGGTATGCATGAAGATTTGATA 59.735 38.462 10.16 0.00 0.00 2.15
388 389 5.069516 GGTTGGGTATGCATGAAGATTTGAT 59.930 40.000 10.16 0.00 0.00 2.57
389 390 4.402155 GGTTGGGTATGCATGAAGATTTGA 59.598 41.667 10.16 0.00 0.00 2.69
390 391 4.160065 TGGTTGGGTATGCATGAAGATTTG 59.840 41.667 10.16 0.00 0.00 2.32
391 392 4.352009 TGGTTGGGTATGCATGAAGATTT 58.648 39.130 10.16 0.00 0.00 2.17
392 393 3.956199 CTGGTTGGGTATGCATGAAGATT 59.044 43.478 10.16 0.00 0.00 2.40
393 394 3.053395 ACTGGTTGGGTATGCATGAAGAT 60.053 43.478 10.16 0.00 0.00 2.40
394 395 2.308570 ACTGGTTGGGTATGCATGAAGA 59.691 45.455 10.16 0.00 0.00 2.87
395 396 2.424601 CACTGGTTGGGTATGCATGAAG 59.575 50.000 10.16 0.00 0.00 3.02
396 397 2.224992 ACACTGGTTGGGTATGCATGAA 60.225 45.455 10.16 0.00 0.00 2.57
397 398 1.354031 ACACTGGTTGGGTATGCATGA 59.646 47.619 10.16 0.00 0.00 3.07
398 399 1.745087 GACACTGGTTGGGTATGCATG 59.255 52.381 10.16 0.00 28.59 4.06
399 400 1.354031 TGACACTGGTTGGGTATGCAT 59.646 47.619 3.79 3.79 28.59 3.96
400 401 0.767998 TGACACTGGTTGGGTATGCA 59.232 50.000 0.00 0.00 28.59 3.96
401 402 1.165270 GTGACACTGGTTGGGTATGC 58.835 55.000 0.00 0.00 28.59 3.14
402 403 2.559698 TGTGACACTGGTTGGGTATG 57.440 50.000 7.20 0.00 28.59 2.39
403 404 5.450818 AATATGTGACACTGGTTGGGTAT 57.549 39.130 7.20 0.00 28.59 2.73
404 405 4.919774 AATATGTGACACTGGTTGGGTA 57.080 40.909 7.20 0.00 28.59 3.69
405 406 3.806949 AATATGTGACACTGGTTGGGT 57.193 42.857 7.20 0.00 33.12 4.51
406 407 4.584874 TGTAATATGTGACACTGGTTGGG 58.415 43.478 7.20 0.00 0.00 4.12
407 408 5.879777 TGATGTAATATGTGACACTGGTTGG 59.120 40.000 7.20 0.00 0.00 3.77
408 409 6.983474 TGATGTAATATGTGACACTGGTTG 57.017 37.500 7.20 0.00 0.00 3.77
409 410 9.109393 GTTATGATGTAATATGTGACACTGGTT 57.891 33.333 7.20 1.67 0.00 3.67
410 411 8.264347 TGTTATGATGTAATATGTGACACTGGT 58.736 33.333 7.20 0.00 0.00 4.00
411 412 8.661352 TGTTATGATGTAATATGTGACACTGG 57.339 34.615 7.20 0.00 0.00 4.00
413 414 8.830580 GCTTGTTATGATGTAATATGTGACACT 58.169 33.333 7.20 0.00 0.00 3.55
414 415 8.070171 GGCTTGTTATGATGTAATATGTGACAC 58.930 37.037 0.00 0.00 0.00 3.67
415 416 7.992608 AGGCTTGTTATGATGTAATATGTGACA 59.007 33.333 0.00 0.00 0.00 3.58
416 417 8.383318 AGGCTTGTTATGATGTAATATGTGAC 57.617 34.615 0.00 0.00 0.00 3.67
417 418 9.710900 CTAGGCTTGTTATGATGTAATATGTGA 57.289 33.333 0.00 0.00 0.00 3.58
418 419 8.446273 GCTAGGCTTGTTATGATGTAATATGTG 58.554 37.037 0.00 0.00 0.00 3.21
419 420 8.378565 AGCTAGGCTTGTTATGATGTAATATGT 58.621 33.333 0.00 0.00 33.89 2.29
420 421 8.783833 AGCTAGGCTTGTTATGATGTAATATG 57.216 34.615 0.00 0.00 33.89 1.78
421 422 8.043710 GGAGCTAGGCTTGTTATGATGTAATAT 58.956 37.037 0.00 0.00 39.88 1.28
422 423 7.386851 GGAGCTAGGCTTGTTATGATGTAATA 58.613 38.462 0.00 0.00 39.88 0.98
423 424 6.234177 GGAGCTAGGCTTGTTATGATGTAAT 58.766 40.000 0.00 0.00 39.88 1.89
424 425 5.611374 GGAGCTAGGCTTGTTATGATGTAA 58.389 41.667 0.00 0.00 39.88 2.41
425 426 4.262036 CGGAGCTAGGCTTGTTATGATGTA 60.262 45.833 0.00 0.00 39.88 2.29
426 427 3.493350 CGGAGCTAGGCTTGTTATGATGT 60.493 47.826 0.00 0.00 39.88 3.06
427 428 3.062763 CGGAGCTAGGCTTGTTATGATG 58.937 50.000 0.00 0.00 39.88 3.07
428 429 3.393089 CGGAGCTAGGCTTGTTATGAT 57.607 47.619 0.00 0.00 39.88 2.45
429 430 2.890808 CGGAGCTAGGCTTGTTATGA 57.109 50.000 0.00 0.00 39.88 2.15
460 461 8.262227 TCCCACTATTAAAAATACAGTGTCGAT 58.738 33.333 0.00 0.00 35.85 3.59
462 463 7.548075 AGTCCCACTATTAAAAATACAGTGTCG 59.452 37.037 0.00 0.00 35.85 4.35
476 477 7.229308 ACTACATCGATACAGTCCCACTATTA 58.771 38.462 0.00 0.00 0.00 0.98
481 482 4.650754 AACTACATCGATACAGTCCCAC 57.349 45.455 10.55 0.00 0.00 4.61
482 483 5.443283 AGTAACTACATCGATACAGTCCCA 58.557 41.667 10.55 0.00 0.00 4.37
504 506 4.069304 TCCAAAACGGTCCTCAAACATAG 58.931 43.478 0.00 0.00 35.57 2.23
525 527 3.572255 TCCTAATTTTTGGTGGCTGTGTC 59.428 43.478 0.00 0.00 0.00 3.67
531 533 6.037062 GCATATTTGTCCTAATTTTTGGTGGC 59.963 38.462 0.00 0.00 0.00 5.01
664 668 1.162698 AATGTACTGCTGCAGTGCTG 58.837 50.000 37.74 17.27 45.03 4.41
665 669 1.538512 CAAATGTACTGCTGCAGTGCT 59.461 47.619 37.74 25.78 45.03 4.40
666 670 1.536766 TCAAATGTACTGCTGCAGTGC 59.463 47.619 37.89 36.06 45.01 4.40
667 671 3.902261 TTCAAATGTACTGCTGCAGTG 57.098 42.857 37.89 23.37 45.01 3.66
669 673 3.611113 GCATTTCAAATGTACTGCTGCAG 59.389 43.478 27.02 27.02 37.52 4.41
670 674 3.577667 GCATTTCAAATGTACTGCTGCA 58.422 40.909 11.80 0.88 0.00 4.41
671 675 2.925563 GGCATTTCAAATGTACTGCTGC 59.074 45.455 11.80 0.00 0.00 5.25
766 770 2.268920 CCGTGGACAGGTGGATGG 59.731 66.667 0.00 0.00 0.00 3.51
1521 1583 0.176680 CCCGGATCACAGGACAAGAG 59.823 60.000 0.73 0.00 33.26 2.85
1602 1681 4.023739 TGCAATTTCATTCGAGCATCAG 57.976 40.909 0.00 0.00 33.17 2.90
1754 1860 4.467084 GAAGCCCATGGGACGCGA 62.467 66.667 36.00 0.00 37.50 5.87
1796 2286 4.975502 CACACAGCGAGCAAAGAAATAAAA 59.024 37.500 0.00 0.00 0.00 1.52
1800 2290 2.221169 TCACACAGCGAGCAAAGAAAT 58.779 42.857 0.00 0.00 0.00 2.17
1801 2291 1.662517 TCACACAGCGAGCAAAGAAA 58.337 45.000 0.00 0.00 0.00 2.52
1851 2364 5.163652 GCTAAAGCCGAAATGAGTTAACCAT 60.164 40.000 0.88 2.99 34.31 3.55
1896 2411 3.081804 CCAACCCAACCATAGTTCAGAC 58.918 50.000 0.00 0.00 32.45 3.51
1897 2412 2.714250 ACCAACCCAACCATAGTTCAGA 59.286 45.455 0.00 0.00 32.45 3.27
1898 2413 3.154827 ACCAACCCAACCATAGTTCAG 57.845 47.619 0.00 0.00 32.45 3.02
1899 2414 3.117474 TCAACCAACCCAACCATAGTTCA 60.117 43.478 0.00 0.00 32.45 3.18
1900 2415 3.492337 TCAACCAACCCAACCATAGTTC 58.508 45.455 0.00 0.00 32.45 3.01
1901 2416 3.603965 TCAACCAACCCAACCATAGTT 57.396 42.857 0.00 0.00 36.33 2.24
1902 2417 3.825908 ATCAACCAACCCAACCATAGT 57.174 42.857 0.00 0.00 0.00 2.12
1973 2488 3.020274 TGAACTAGCTAGCAGAGGACAG 58.980 50.000 20.91 4.53 0.00 3.51
1978 2493 6.026513 GCAAATTTTGAACTAGCTAGCAGAG 58.973 40.000 20.91 15.77 0.00 3.35
2056 2575 3.118884 ACCGAATATAACGTCCAAGCACT 60.119 43.478 0.00 0.00 0.00 4.40
2075 2594 7.170828 TCGTTTCCAAGATGATATCATTAACCG 59.829 37.037 19.11 12.29 36.57 4.44
2099 2618 4.275936 AGAAAACCTCCAACACAAGAATCG 59.724 41.667 0.00 0.00 0.00 3.34
2113 2632 4.918810 ACAATCACAACCAGAAAACCTC 57.081 40.909 0.00 0.00 0.00 3.85
2165 2684 6.795399 ACTGTAATTGTCAACTCCAAGTTTG 58.205 36.000 0.00 0.00 36.03 2.93
2173 2692 5.467705 ACCGTCTACTGTAATTGTCAACTC 58.532 41.667 0.00 0.00 0.00 3.01
2263 2789 4.688879 CACTTGTTTCTCTTATACCGTGCA 59.311 41.667 0.00 0.00 0.00 4.57
2265 2791 9.577110 TTATACACTTGTTTCTCTTATACCGTG 57.423 33.333 0.00 0.00 0.00 4.94
2372 2898 2.753452 TCCCTGTACAAACGTGCAAAAA 59.247 40.909 0.00 0.00 0.00 1.94
2373 2899 2.366533 TCCCTGTACAAACGTGCAAAA 58.633 42.857 0.00 0.00 0.00 2.44
2374 2900 2.039818 TCCCTGTACAAACGTGCAAA 57.960 45.000 0.00 0.00 0.00 3.68
2375 2901 2.264005 ATCCCTGTACAAACGTGCAA 57.736 45.000 0.00 0.00 0.00 4.08
2376 2902 2.264005 AATCCCTGTACAAACGTGCA 57.736 45.000 0.00 0.00 0.00 4.57
2377 2903 2.351350 CCAAATCCCTGTACAAACGTGC 60.351 50.000 0.00 0.00 0.00 5.34
2572 3109 9.426837 CCAATCACAAAACTTCATTGACAATAT 57.573 29.630 0.00 0.00 0.00 1.28
2579 3116 5.929992 AGCATCCAATCACAAAACTTCATTG 59.070 36.000 0.00 0.00 0.00 2.82
2583 3120 6.624423 ACATAGCATCCAATCACAAAACTTC 58.376 36.000 0.00 0.00 0.00 3.01
2589 3126 4.771577 ACCAAACATAGCATCCAATCACAA 59.228 37.500 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.