Multiple sequence alignment - TraesCS7B01G016100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G016100 chr7B 100.000 9752 0 0 1 9752 13809771 13800020 0.000000e+00 18009.0
1 TraesCS7B01G016100 chr7B 85.901 2447 302 22 1 2423 13880538 13878111 0.000000e+00 2567.0
2 TraesCS7B01G016100 chr7B 88.131 1685 179 18 802 2478 13117192 13115521 0.000000e+00 1984.0
3 TraesCS7B01G016100 chr7B 91.630 1350 95 11 2505 3841 609842596 609843940 0.000000e+00 1851.0
4 TraesCS7B01G016100 chr7B 86.611 1688 199 21 798 2478 14996092 14997759 0.000000e+00 1840.0
5 TraesCS7B01G016100 chr7B 91.420 1352 94 15 2508 3844 742414478 742413134 0.000000e+00 1834.0
6 TraesCS7B01G016100 chr7B 86.349 945 90 22 6457 7378 14065830 14064902 0.000000e+00 994.0
7 TraesCS7B01G016100 chr7B 84.062 960 109 23 6751 7686 13818503 13817564 0.000000e+00 885.0
8 TraesCS7B01G016100 chr7B 86.229 777 96 7 7 782 13118024 13117258 0.000000e+00 832.0
9 TraesCS7B01G016100 chr7B 80.991 868 139 20 3848 4698 14066939 14066081 0.000000e+00 665.0
10 TraesCS7B01G016100 chr7B 91.453 351 30 0 8223 8573 13859553 13859203 5.300000e-132 483.0
11 TraesCS7B01G016100 chr7B 75.936 561 112 16 5111 5650 663747837 663747279 5.810000e-67 267.0
12 TraesCS7B01G016100 chr7B 81.421 183 22 8 4382 4554 13866899 13866719 1.320000e-28 139.0
13 TraesCS7B01G016100 chr7B 98.305 59 0 1 6397 6454 319239180 319239238 1.730000e-17 102.0
14 TraesCS7B01G016100 chr7D 94.956 2478 111 8 1 2474 71319868 71317401 0.000000e+00 3871.0
15 TraesCS7B01G016100 chr7D 86.291 2429 305 15 1 2423 71344099 71346505 0.000000e+00 2615.0
16 TraesCS7B01G016100 chr7D 85.714 2471 295 42 1 2444 71217069 71214630 0.000000e+00 2555.0
17 TraesCS7B01G016100 chr7D 87.715 1628 168 20 856 2478 71548773 71547173 0.000000e+00 1869.0
18 TraesCS7B01G016100 chr7D 91.266 1351 98 10 2508 3844 466847998 466846654 0.000000e+00 1823.0
19 TraesCS7B01G016100 chr7D 94.832 1161 42 9 6447 7597 71316383 71315231 0.000000e+00 1796.0
20 TraesCS7B01G016100 chr7D 93.043 963 40 9 3843 4790 71317364 71316414 0.000000e+00 1382.0
21 TraesCS7B01G016100 chr7D 88.000 1125 77 26 7726 8807 71314654 71313545 0.000000e+00 1277.0
22 TraesCS7B01G016100 chr7D 89.114 937 93 6 5406 6335 20004113 20005047 0.000000e+00 1157.0
23 TraesCS7B01G016100 chr7D 91.862 725 50 5 6457 7176 71546053 71545333 0.000000e+00 1003.0
24 TraesCS7B01G016100 chr7D 86.115 785 99 6 1 783 70747856 70748632 0.000000e+00 837.0
25 TraesCS7B01G016100 chr7D 82.854 834 117 19 3848 4662 71547135 71546309 0.000000e+00 725.0
26 TraesCS7B01G016100 chr7D 86.609 575 62 12 8223 8786 70827412 70826842 1.080000e-173 621.0
27 TraesCS7B01G016100 chr7D 87.266 534 59 6 8223 8748 70753068 70753600 1.400000e-167 601.0
28 TraesCS7B01G016100 chr7D 80.187 747 95 32 3843 4570 72170845 72171557 2.430000e-140 510.0
29 TraesCS7B01G016100 chr7D 91.304 345 27 2 8231 8573 71544800 71544457 1.480000e-127 468.0
30 TraesCS7B01G016100 chr7D 77.799 518 59 32 9291 9752 71313167 71312650 1.610000e-67 268.0
31 TraesCS7B01G016100 chr7D 91.558 154 13 0 8595 8748 71211384 71211231 7.670000e-51 213.0
32 TraesCS7B01G016100 chr7D 85.276 163 15 6 7525 7684 70827696 70827540 1.010000e-34 159.0
33 TraesCS7B01G016100 chr7D 88.489 139 6 6 7567 7701 71212068 71211936 1.010000e-34 159.0
34 TraesCS7B01G016100 chr7D 86.047 129 12 3 4428 4551 71362712 71362839 6.140000e-27 134.0
35 TraesCS7B01G016100 chrUn 94.460 1733 86 6 743 2474 84435464 84437187 0.000000e+00 2660.0
36 TraesCS7B01G016100 chrUn 84.996 2466 306 42 1 2444 84287517 84285094 0.000000e+00 2446.0
37 TraesCS7B01G016100 chrUn 84.996 2466 306 42 1 2444 226940842 226938419 0.000000e+00 2446.0
38 TraesCS7B01G016100 chrUn 84.380 2452 316 34 1 2421 84239178 84236763 0.000000e+00 2344.0
39 TraesCS7B01G016100 chrUn 91.640 1555 63 27 7726 9229 84439730 84441268 0.000000e+00 2089.0
40 TraesCS7B01G016100 chrUn 87.892 1594 164 16 876 2466 82528703 82527136 0.000000e+00 1847.0
41 TraesCS7B01G016100 chrUn 93.863 1157 57 6 6447 7597 84438293 84439441 0.000000e+00 1731.0
42 TraesCS7B01G016100 chrUn 96.237 744 27 1 1 744 84434639 84435381 0.000000e+00 1218.0
43 TraesCS7B01G016100 chrUn 83.439 1256 152 35 6469 7686 82515920 82514683 0.000000e+00 1116.0
44 TraesCS7B01G016100 chrUn 85.378 978 135 7 1501 2474 82518197 82517224 0.000000e+00 1007.0
45 TraesCS7B01G016100 chrUn 91.375 742 50 6 6453 7190 84246696 84245965 0.000000e+00 1003.0
46 TraesCS7B01G016100 chrUn 91.621 728 50 8 6453 7176 82526249 82525529 0.000000e+00 996.0
47 TraesCS7B01G016100 chrUn 84.453 1042 109 27 6447 7441 84284204 84283169 0.000000e+00 977.0
48 TraesCS7B01G016100 chrUn 84.453 1042 109 27 6447 7441 226937529 226936494 0.000000e+00 977.0
49 TraesCS7B01G016100 chrUn 93.226 620 23 4 3847 4455 84437228 84437839 0.000000e+00 894.0
50 TraesCS7B01G016100 chrUn 85.766 548 65 8 6788 7326 329447381 329447924 1.420000e-157 568.0
51 TraesCS7B01G016100 chrUn 87.269 487 50 5 3862 4336 82517176 82516690 6.660000e-151 545.0
52 TraesCS7B01G016100 chrUn 93.275 342 19 4 4453 4790 84437921 84438262 1.460000e-137 501.0
53 TraesCS7B01G016100 chrUn 83.029 548 79 11 3847 4387 84236662 84236122 1.470000e-132 484.0
54 TraesCS7B01G016100 chrUn 92.484 306 2 9 9468 9752 84441265 84441570 1.510000e-112 418.0
55 TraesCS7B01G016100 chrUn 90.506 158 15 0 8591 8748 84282387 84282230 9.920000e-50 209.0
56 TraesCS7B01G016100 chrUn 88.158 152 8 6 7553 7700 84283091 84282946 1.300000e-38 172.0
57 TraesCS7B01G016100 chrUn 88.158 152 8 6 7553 7700 226936416 226936271 1.300000e-38 172.0
58 TraesCS7B01G016100 chrUn 93.162 117 2 4 7599 7709 84439575 84439691 6.060000e-37 167.0
59 TraesCS7B01G016100 chrUn 80.180 111 13 6 4388 4489 82516689 82516579 3.780000e-09 75.0
60 TraesCS7B01G016100 chrUn 95.238 42 2 0 8020 8061 84440068 84440109 6.320000e-07 67.6
61 TraesCS7B01G016100 chr2B 85.574 2447 310 24 1 2423 723404466 723402039 0.000000e+00 2523.0
62 TraesCS7B01G016100 chr2B 94.676 1296 67 2 5046 6339 610601265 610602560 0.000000e+00 2010.0
63 TraesCS7B01G016100 chr2B 87.255 510 50 8 3843 4339 723393671 723393164 1.420000e-157 568.0
64 TraesCS7B01G016100 chr2B 83.060 183 19 8 4382 4554 723393169 723392989 1.310000e-33 156.0
65 TraesCS7B01G016100 chr2B 89.362 94 8 2 7833 7925 33908844 33908936 6.190000e-22 117.0
66 TraesCS7B01G016100 chr3B 95.398 1521 67 2 4818 6335 693647642 693649162 0.000000e+00 2418.0
67 TraesCS7B01G016100 chr3B 91.127 1544 97 17 4826 6338 141706874 141705340 0.000000e+00 2056.0
68 TraesCS7B01G016100 chr7A 84.403 2462 308 45 1 2444 76986011 76983608 0.000000e+00 2350.0
69 TraesCS7B01G016100 chr7A 86.062 1686 207 19 798 2478 77159254 77160916 0.000000e+00 1786.0
70 TraesCS7B01G016100 chr7A 87.886 809 80 10 6447 7243 76982401 76981599 0.000000e+00 935.0
71 TraesCS7B01G016100 chr7A 85.875 800 102 7 1 799 76943423 76942634 0.000000e+00 841.0
72 TraesCS7B01G016100 chr7A 86.783 575 62 11 8223 8786 76938858 76938287 6.430000e-176 628.0
73 TraesCS7B01G016100 chr7A 87.805 533 56 6 8223 8748 76511566 76511036 5.000000e-172 616.0
74 TraesCS7B01G016100 chr7A 87.006 531 62 6 8223 8748 76832761 76833289 8.430000e-165 592.0
75 TraesCS7B01G016100 chr7A 81.148 366 42 16 7323 7686 77007029 77006689 1.610000e-67 268.0
76 TraesCS7B01G016100 chr7A 85.455 165 12 8 7540 7700 76981394 76981238 2.820000e-35 161.0
77 TraesCS7B01G016100 chr5B 93.778 1350 68 8 2505 3840 243413206 243414553 0.000000e+00 2013.0
78 TraesCS7B01G016100 chr5B 91.673 1357 92 12 2505 3844 282017753 282019105 0.000000e+00 1860.0
79 TraesCS7B01G016100 chr5B 79.965 1133 190 22 5228 6335 703799390 703800510 0.000000e+00 800.0
80 TraesCS7B01G016100 chr5B 93.750 64 3 1 6397 6459 108047541 108047478 2.900000e-15 95.3
81 TraesCS7B01G016100 chr6D 92.674 1365 80 11 2495 3841 469590395 469591757 0.000000e+00 1949.0
82 TraesCS7B01G016100 chr6D 92.228 1351 86 10 2508 3844 390167910 390166565 0.000000e+00 1895.0
83 TraesCS7B01G016100 chr6D 96.552 87 3 0 7833 7919 155601961 155602047 2.840000e-30 145.0
84 TraesCS7B01G016100 chr6D 93.750 64 3 1 6397 6459 150157003 150156940 2.900000e-15 95.3
85 TraesCS7B01G016100 chr1A 91.407 1350 95 12 2508 3841 34975786 34977130 0.000000e+00 1831.0
86 TraesCS7B01G016100 chr1A 88.438 960 102 6 5381 6333 583329286 583330243 0.000000e+00 1149.0
87 TraesCS7B01G016100 chr1A 82.512 1258 168 32 6467 7686 21772895 21771652 0.000000e+00 1057.0
88 TraesCS7B01G016100 chr1A 77.695 937 156 34 3852 4762 21773860 21772951 3.120000e-144 523.0
89 TraesCS7B01G016100 chr1A 96.471 85 3 0 7833 7917 545330969 545330885 3.670000e-29 141.0
90 TraesCS7B01G016100 chr1A 92.941 85 6 0 7833 7917 372237158 372237242 3.700000e-24 124.0
91 TraesCS7B01G016100 chr1A 93.750 64 1 3 6383 6446 24685980 24686040 1.040000e-14 93.5
92 TraesCS7B01G016100 chr5D 91.042 1373 92 17 2495 3841 525598102 525599469 0.000000e+00 1825.0
93 TraesCS7B01G016100 chr5D 88.333 960 99 8 5381 6333 515269384 515270337 0.000000e+00 1140.0
94 TraesCS7B01G016100 chr2D 85.473 1542 181 24 4825 6338 637374031 637372505 0.000000e+00 1567.0
95 TraesCS7B01G016100 chr2D 82.096 1536 230 29 4831 6332 31992942 31991418 0.000000e+00 1271.0
96 TraesCS7B01G016100 chr2D 85.007 687 82 13 4824 5492 639296895 639297578 0.000000e+00 678.0
97 TraesCS7B01G016100 chr2D 96.512 86 3 0 7833 7918 175825026 175825111 1.020000e-29 143.0
98 TraesCS7B01G016100 chr2A 93.854 960 55 3 5381 6339 20169878 20168922 0.000000e+00 1443.0
99 TraesCS7B01G016100 chr2A 89.474 95 8 2 7833 7926 21264866 21264959 1.720000e-22 119.0
100 TraesCS7B01G016100 chr6A 83.831 1540 210 26 4824 6339 54007274 54008798 0.000000e+00 1428.0
101 TraesCS7B01G016100 chr6A 95.402 87 4 0 7833 7919 209391341 209391427 1.320000e-28 139.0
102 TraesCS7B01G016100 chr5A 82.648 1533 228 26 4824 6332 709416326 709414808 0.000000e+00 1323.0
103 TraesCS7B01G016100 chr5A 82.453 1533 231 24 4824 6332 709419409 709420927 0.000000e+00 1306.0
104 TraesCS7B01G016100 chr5A 95.312 64 2 1 6397 6460 104466058 104465996 6.230000e-17 100.0
105 TraesCS7B01G016100 chr5A 94.030 67 2 2 6397 6461 466410086 466410020 6.230000e-17 100.0
106 TraesCS7B01G016100 chr3D 83.897 1360 178 26 4998 6332 519601721 519603064 0.000000e+00 1260.0
107 TraesCS7B01G016100 chr1D 82.677 1397 179 23 4975 6341 52355694 52354331 0.000000e+00 1181.0
108 TraesCS7B01G016100 chr1D 88.889 963 96 9 5384 6338 11318333 11317374 0.000000e+00 1175.0
109 TraesCS7B01G016100 chr1D 88.389 956 102 7 5384 6332 25674682 25673729 0.000000e+00 1142.0
110 TraesCS7B01G016100 chr1D 94.118 85 3 2 7833 7917 298568559 298568641 2.860000e-25 128.0
111 TraesCS7B01G016100 chr1D 100.000 51 0 0 6397 6447 402829003 402829053 2.900000e-15 95.3
112 TraesCS7B01G016100 chr1B 89.028 957 95 7 5384 6333 56995368 56996321 0.000000e+00 1177.0
113 TraesCS7B01G016100 chr1B 95.294 85 4 0 7833 7917 556993771 556993855 1.710000e-27 135.0
114 TraesCS7B01G016100 chr1B 94.118 85 4 1 7833 7917 401618954 401619037 2.860000e-25 128.0
115 TraesCS7B01G016100 chr1B 92.958 71 3 2 6397 6465 357012619 357012549 1.730000e-17 102.0
116 TraesCS7B01G016100 chr6B 88.357 627 56 8 4825 5436 308517798 308517174 0.000000e+00 737.0
117 TraesCS7B01G016100 chr6B 95.402 87 4 0 7833 7919 278674613 278674699 1.320000e-28 139.0
118 TraesCS7B01G016100 chr6B 92.424 66 3 2 6397 6460 177299081 177299016 1.040000e-14 93.5
119 TraesCS7B01G016100 chr4A 91.398 93 6 2 7834 7924 259769099 259769007 1.030000e-24 126.0
120 TraesCS7B01G016100 chr4D 87.850 107 10 3 7821 7924 231221892 231221786 1.330000e-23 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G016100 chr7B 13800020 13809771 9751 True 18009.000000 18009 100.000000 1 9752 1 chr7B.!!$R1 9751
1 TraesCS7B01G016100 chr7B 13878111 13880538 2427 True 2567.000000 2567 85.901000 1 2423 1 chr7B.!!$R5 2422
2 TraesCS7B01G016100 chr7B 609842596 609843940 1344 False 1851.000000 1851 91.630000 2505 3841 1 chr7B.!!$F3 1336
3 TraesCS7B01G016100 chr7B 14996092 14997759 1667 False 1840.000000 1840 86.611000 798 2478 1 chr7B.!!$F1 1680
4 TraesCS7B01G016100 chr7B 742413134 742414478 1344 True 1834.000000 1834 91.420000 2508 3844 1 chr7B.!!$R7 1336
5 TraesCS7B01G016100 chr7B 13115521 13118024 2503 True 1408.000000 1984 87.180000 7 2478 2 chr7B.!!$R8 2471
6 TraesCS7B01G016100 chr7B 13817564 13818503 939 True 885.000000 885 84.062000 6751 7686 1 chr7B.!!$R2 935
7 TraesCS7B01G016100 chr7B 14064902 14066939 2037 True 829.500000 994 83.670000 3848 7378 2 chr7B.!!$R9 3530
8 TraesCS7B01G016100 chr7B 663747279 663747837 558 True 267.000000 267 75.936000 5111 5650 1 chr7B.!!$R6 539
9 TraesCS7B01G016100 chr7D 71344099 71346505 2406 False 2615.000000 2615 86.291000 1 2423 1 chr7D.!!$F4 2422
10 TraesCS7B01G016100 chr7D 466846654 466847998 1344 True 1823.000000 1823 91.266000 2508 3844 1 chr7D.!!$R1 1336
11 TraesCS7B01G016100 chr7D 71312650 71319868 7218 True 1718.800000 3871 89.726000 1 9752 5 chr7D.!!$R4 9751
12 TraesCS7B01G016100 chr7D 20004113 20005047 934 False 1157.000000 1157 89.114000 5406 6335 1 chr7D.!!$F1 929
13 TraesCS7B01G016100 chr7D 71544457 71548773 4316 True 1016.250000 1869 88.433750 856 8573 4 chr7D.!!$R5 7717
14 TraesCS7B01G016100 chr7D 71211231 71217069 5838 True 975.666667 2555 88.587000 1 8748 3 chr7D.!!$R3 8747
15 TraesCS7B01G016100 chr7D 70747856 70748632 776 False 837.000000 837 86.115000 1 783 1 chr7D.!!$F2 782
16 TraesCS7B01G016100 chr7D 70753068 70753600 532 False 601.000000 601 87.266000 8223 8748 1 chr7D.!!$F3 525
17 TraesCS7B01G016100 chr7D 72170845 72171557 712 False 510.000000 510 80.187000 3843 4570 1 chr7D.!!$F6 727
18 TraesCS7B01G016100 chr7D 70826842 70827696 854 True 390.000000 621 85.942500 7525 8786 2 chr7D.!!$R2 1261
19 TraesCS7B01G016100 chrUn 82525529 82528703 3174 True 1421.500000 1847 89.756500 876 7176 2 chrUn.!!$R3 6300
20 TraesCS7B01G016100 chrUn 84236122 84239178 3056 True 1414.000000 2344 83.704500 1 4387 2 chrUn.!!$R4 4386
21 TraesCS7B01G016100 chrUn 226936271 226940842 4571 True 1198.333333 2446 85.869000 1 7700 3 chrUn.!!$R6 7699
22 TraesCS7B01G016100 chrUn 84434639 84441570 6931 False 1082.844444 2660 93.731667 1 9752 9 chrUn.!!$F2 9751
23 TraesCS7B01G016100 chrUn 84245965 84246696 731 True 1003.000000 1003 91.375000 6453 7190 1 chrUn.!!$R1 737
24 TraesCS7B01G016100 chrUn 84282230 84287517 5287 True 951.000000 2446 87.028250 1 8748 4 chrUn.!!$R5 8747
25 TraesCS7B01G016100 chrUn 82514683 82518197 3514 True 685.750000 1116 84.066500 1501 7686 4 chrUn.!!$R2 6185
26 TraesCS7B01G016100 chrUn 329447381 329447924 543 False 568.000000 568 85.766000 6788 7326 1 chrUn.!!$F1 538
27 TraesCS7B01G016100 chr2B 723402039 723404466 2427 True 2523.000000 2523 85.574000 1 2423 1 chr2B.!!$R1 2422
28 TraesCS7B01G016100 chr2B 610601265 610602560 1295 False 2010.000000 2010 94.676000 5046 6339 1 chr2B.!!$F2 1293
29 TraesCS7B01G016100 chr2B 723392989 723393671 682 True 362.000000 568 85.157500 3843 4554 2 chr2B.!!$R2 711
30 TraesCS7B01G016100 chr3B 693647642 693649162 1520 False 2418.000000 2418 95.398000 4818 6335 1 chr3B.!!$F1 1517
31 TraesCS7B01G016100 chr3B 141705340 141706874 1534 True 2056.000000 2056 91.127000 4826 6338 1 chr3B.!!$R1 1512
32 TraesCS7B01G016100 chr7A 77159254 77160916 1662 False 1786.000000 1786 86.062000 798 2478 1 chr7A.!!$F2 1680
33 TraesCS7B01G016100 chr7A 76981238 76986011 4773 True 1148.666667 2350 85.914667 1 7700 3 chr7A.!!$R4 7699
34 TraesCS7B01G016100 chr7A 76938287 76943423 5136 True 734.500000 841 86.329000 1 8786 2 chr7A.!!$R3 8785
35 TraesCS7B01G016100 chr7A 76511036 76511566 530 True 616.000000 616 87.805000 8223 8748 1 chr7A.!!$R1 525
36 TraesCS7B01G016100 chr7A 76832761 76833289 528 False 592.000000 592 87.006000 8223 8748 1 chr7A.!!$F1 525
37 TraesCS7B01G016100 chr5B 243413206 243414553 1347 False 2013.000000 2013 93.778000 2505 3840 1 chr5B.!!$F1 1335
38 TraesCS7B01G016100 chr5B 282017753 282019105 1352 False 1860.000000 1860 91.673000 2505 3844 1 chr5B.!!$F2 1339
39 TraesCS7B01G016100 chr5B 703799390 703800510 1120 False 800.000000 800 79.965000 5228 6335 1 chr5B.!!$F3 1107
40 TraesCS7B01G016100 chr6D 469590395 469591757 1362 False 1949.000000 1949 92.674000 2495 3841 1 chr6D.!!$F2 1346
41 TraesCS7B01G016100 chr6D 390166565 390167910 1345 True 1895.000000 1895 92.228000 2508 3844 1 chr6D.!!$R2 1336
42 TraesCS7B01G016100 chr1A 34975786 34977130 1344 False 1831.000000 1831 91.407000 2508 3841 1 chr1A.!!$F2 1333
43 TraesCS7B01G016100 chr1A 583329286 583330243 957 False 1149.000000 1149 88.438000 5381 6333 1 chr1A.!!$F4 952
44 TraesCS7B01G016100 chr1A 21771652 21773860 2208 True 790.000000 1057 80.103500 3852 7686 2 chr1A.!!$R2 3834
45 TraesCS7B01G016100 chr5D 525598102 525599469 1367 False 1825.000000 1825 91.042000 2495 3841 1 chr5D.!!$F2 1346
46 TraesCS7B01G016100 chr5D 515269384 515270337 953 False 1140.000000 1140 88.333000 5381 6333 1 chr5D.!!$F1 952
47 TraesCS7B01G016100 chr2D 637372505 637374031 1526 True 1567.000000 1567 85.473000 4825 6338 1 chr2D.!!$R2 1513
48 TraesCS7B01G016100 chr2D 31991418 31992942 1524 True 1271.000000 1271 82.096000 4831 6332 1 chr2D.!!$R1 1501
49 TraesCS7B01G016100 chr2D 639296895 639297578 683 False 678.000000 678 85.007000 4824 5492 1 chr2D.!!$F2 668
50 TraesCS7B01G016100 chr2A 20168922 20169878 956 True 1443.000000 1443 93.854000 5381 6339 1 chr2A.!!$R1 958
51 TraesCS7B01G016100 chr6A 54007274 54008798 1524 False 1428.000000 1428 83.831000 4824 6339 1 chr6A.!!$F1 1515
52 TraesCS7B01G016100 chr5A 709414808 709416326 1518 True 1323.000000 1323 82.648000 4824 6332 1 chr5A.!!$R3 1508
53 TraesCS7B01G016100 chr5A 709419409 709420927 1518 False 1306.000000 1306 82.453000 4824 6332 1 chr5A.!!$F1 1508
54 TraesCS7B01G016100 chr3D 519601721 519603064 1343 False 1260.000000 1260 83.897000 4998 6332 1 chr3D.!!$F1 1334
55 TraesCS7B01G016100 chr1D 52354331 52355694 1363 True 1181.000000 1181 82.677000 4975 6341 1 chr1D.!!$R3 1366
56 TraesCS7B01G016100 chr1D 11317374 11318333 959 True 1175.000000 1175 88.889000 5384 6338 1 chr1D.!!$R1 954
57 TraesCS7B01G016100 chr1D 25673729 25674682 953 True 1142.000000 1142 88.389000 5384 6332 1 chr1D.!!$R2 948
58 TraesCS7B01G016100 chr1B 56995368 56996321 953 False 1177.000000 1177 89.028000 5384 6333 1 chr1B.!!$F1 949
59 TraesCS7B01G016100 chr6B 308517174 308517798 624 True 737.000000 737 88.357000 4825 5436 1 chr6B.!!$R2 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 857 1.156736 ACTGCCAAATTCCGAGTTCG 58.843 50.000 0.00 0.00 39.44 3.95 F
2042 2210 1.688735 GGATCCAGACATCACGATCCA 59.311 52.381 6.95 0.00 46.74 3.41 F
2120 2288 1.555533 CGCCTCTAGGAAGGGTTCTTT 59.444 52.381 0.00 0.00 36.88 2.52 F
3039 3261 1.311403 CTCCTCCCAGGCTCCAGTA 59.689 63.158 0.00 0.00 34.61 2.74 F
3169 3392 0.529773 GACAGTGCACAGGTTGTCGA 60.530 55.000 21.04 0.00 31.72 4.20 F
4800 5860 0.104487 CTCATGTGCGATCTGGCTCT 59.896 55.000 0.00 0.00 0.00 4.09 F
4804 5864 0.321346 TGTGCGATCTGGCTCTTGAA 59.679 50.000 0.00 0.00 0.00 2.69 F
5886 7024 0.538287 GGTGCTCTTGGACAAAGCCT 60.538 55.000 12.97 0.00 36.16 4.58 F
7559 9178 0.445829 TATGGCGTGTGCACATTTCG 59.554 50.000 24.69 22.17 45.35 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2269 2.306219 ACAAAGAACCCTTCCTAGAGGC 59.694 50.000 0.00 0.00 35.37 4.70 R
3039 3261 0.892358 CTGCCAGAATGTGCCACACT 60.892 55.000 0.00 0.00 35.11 3.55 R
3041 3263 1.151221 ACTGCCAGAATGTGCCACA 59.849 52.632 0.00 0.00 32.37 4.17 R
4781 5841 0.104487 AGAGCCAGATCGCACATGAG 59.896 55.000 0.00 0.00 0.00 2.90 R
4805 5865 0.109913 GTCGGGGGAGGTGTTTTTCT 59.890 55.000 0.00 0.00 0.00 2.52 R
6683 7943 0.918983 TCTTGGGGCCAATCTGGTAG 59.081 55.000 4.39 0.00 40.46 3.18 R
6797 8061 5.403466 TGTCAGATGAAAATCGATCGCATAG 59.597 40.000 11.09 4.56 0.00 2.23 R
7720 9912 0.177141 TTTCCGCCATCTAGTTCCCG 59.823 55.000 0.00 0.00 0.00 5.14 R
9441 12437 0.108472 TGTGCCGCTCTCTCAGATTG 60.108 55.000 0.00 0.00 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
226 227 2.876550 GGTTGAGTACAAGTGGTTGTCC 59.123 50.000 0.00 0.00 43.88 4.02
232 233 1.398692 ACAAGTGGTTGTCCGCATTT 58.601 45.000 0.78 0.00 43.88 2.32
433 434 3.062234 GCGTTGTGATACAAGCTAAGGTC 59.938 47.826 0.00 0.00 39.00 3.85
528 529 2.420129 GGCACTGATTACCCTGTACCTG 60.420 54.545 0.00 0.00 0.00 4.00
542 543 4.441495 CCTGTACCTGTAGCGATGAATTCA 60.441 45.833 11.26 11.26 0.00 2.57
580 581 5.888161 GGGATGAGAATACATCAAAACCAGT 59.112 40.000 0.00 0.00 45.68 4.00
644 645 2.290896 TGCAATTTGTGGAGAGGTAGGG 60.291 50.000 0.00 0.00 0.00 3.53
705 706 1.395826 CCCCAAAACCAAAGGCACGA 61.396 55.000 0.00 0.00 0.00 4.35
763 857 1.156736 ACTGCCAAATTCCGAGTTCG 58.843 50.000 0.00 0.00 39.44 3.95
784 878 8.504005 AGTTCGGACATTTAGACATGTTTAAAG 58.496 33.333 21.76 16.68 37.52 1.85
786 880 6.373216 TCGGACATTTAGACATGTTTAAAGGG 59.627 38.462 27.03 21.24 37.52 3.95
799 893 4.825085 TGTTTAAAGGGAACATGGTCTGTC 59.175 41.667 11.29 1.03 36.98 3.51
985 1136 6.469410 ACAGGAACCGTGAAAGACAATATTA 58.531 36.000 0.00 0.00 0.00 0.98
1265 1417 8.943002 CATATCAGCAGATGCAGATTGTATTTA 58.057 33.333 16.44 0.00 43.38 1.40
1266 1418 6.609237 TCAGCAGATGCAGATTGTATTTAC 57.391 37.500 7.68 0.00 45.16 2.01
1297 1450 9.548208 GATTATGAACAGTTTTACAAAGCTCTC 57.452 33.333 0.00 0.00 0.00 3.20
1347 1500 7.702772 GCTCTATCAGACAAGATCGTTCTTTTA 59.297 37.037 6.00 0.00 40.28 1.52
1457 1610 8.757982 ATTTGTGCCTCTATGATTTATGTTCT 57.242 30.769 0.00 0.00 0.00 3.01
1623 1785 8.227507 AGACCTTGTAAATGCCCATAAAGATAT 58.772 33.333 0.00 0.00 0.00 1.63
1648 1810 6.765989 TGATGGGTGTTTCCGATCTTAATAAG 59.234 38.462 9.50 0.00 46.91 1.73
1678 1840 5.071115 ACACTCTCAAAGAGCTAAGGAAGTT 59.929 40.000 3.90 0.00 46.12 2.66
1680 1842 6.484977 CACTCTCAAAGAGCTAAGGAAGTTTT 59.515 38.462 3.90 0.00 46.12 2.43
1802 1970 3.316308 GGATGCAGGTGTTAAGCCTTATG 59.684 47.826 0.00 0.00 33.31 1.90
2042 2210 1.688735 GGATCCAGACATCACGATCCA 59.311 52.381 6.95 0.00 46.74 3.41
2120 2288 1.555533 CGCCTCTAGGAAGGGTTCTTT 59.444 52.381 0.00 0.00 36.88 2.52
2122 2290 2.306219 GCCTCTAGGAAGGGTTCTTTGT 59.694 50.000 0.00 0.00 36.88 2.83
2405 2575 4.222810 GGGAATTTGGTTGCAGGTAATCTT 59.777 41.667 0.00 0.00 0.00 2.40
2481 2679 2.571548 CAACTGATGTTGCTCCCCC 58.428 57.895 0.00 0.00 45.57 5.40
2567 2778 2.787866 CTCCCTCCCTTCCCTCCA 59.212 66.667 0.00 0.00 0.00 3.86
2732 2944 4.254709 TGTGCTGCAGGCGAAGGT 62.255 61.111 17.12 0.00 45.43 3.50
3039 3261 1.311403 CTCCTCCCAGGCTCCAGTA 59.689 63.158 0.00 0.00 34.61 2.74
3040 3262 0.758685 CTCCTCCCAGGCTCCAGTAG 60.759 65.000 0.00 0.00 34.61 2.57
3041 3263 1.002274 CCTCCCAGGCTCCAGTAGT 59.998 63.158 0.00 0.00 0.00 2.73
3053 3275 1.977854 TCCAGTAGTGTGGCACATTCT 59.022 47.619 24.95 18.86 44.52 2.40
3110 3333 2.755876 TGTTGCGGTTGGTTGCCA 60.756 55.556 0.00 0.00 0.00 4.92
3169 3392 0.529773 GACAGTGCACAGGTTGTCGA 60.530 55.000 21.04 0.00 31.72 4.20
3183 3407 3.399330 GTTGTCGAGTGGATTTCTTGGA 58.601 45.455 0.00 0.00 0.00 3.53
3184 3408 3.981071 TGTCGAGTGGATTTCTTGGAT 57.019 42.857 0.00 0.00 0.00 3.41
3249 3474 2.802816 GTGATGACGATGCCCTTATCAC 59.197 50.000 0.00 0.00 38.07 3.06
3310 3539 1.691337 CCACCCAATACCTCCGGGA 60.691 63.158 0.00 0.00 43.21 5.14
3497 3733 2.437359 AGGCTTGGCGTCAGATGC 60.437 61.111 6.00 6.00 0.00 3.91
3664 3902 3.535629 CTGGTTGAGGAGCACGCCA 62.536 63.158 0.00 0.00 32.77 5.69
3711 3949 3.900888 TCCTGGTTGGGACCTCAC 58.099 61.111 0.00 0.00 46.66 3.51
3712 3950 1.074090 TCCTGGTTGGGACCTCACA 60.074 57.895 0.00 0.00 46.66 3.58
3845 4083 7.040961 GGCTTTGGTCTTACTGTTGTATAACAA 60.041 37.037 6.50 0.00 45.53 2.83
3990 4228 5.419542 CACTTAGGTGAATCGATTTCAGGA 58.580 41.667 12.81 0.00 44.89 3.86
3991 4229 5.874810 CACTTAGGTGAATCGATTTCAGGAA 59.125 40.000 12.81 4.14 44.89 3.36
4008 4246 3.374058 CAGGAACTACAACAATAAGGGCG 59.626 47.826 0.00 0.00 36.02 6.13
4050 4288 8.427774 CGTTTCTTTGCTAAAAATTTGGATCTC 58.572 33.333 0.00 0.00 0.00 2.75
4069 4307 4.401022 TCTCATTGACAAGAATGCCAGTT 58.599 39.130 0.00 0.00 33.95 3.16
4234 4501 5.933463 CACCATGTTGCTTCAAATATTTGGT 59.067 36.000 24.40 10.99 38.66 3.67
4243 4510 7.271511 TGCTTCAAATATTTGGTGAAAGTTGT 58.728 30.769 24.40 0.00 38.66 3.32
4258 4525 3.380479 AGTTGTGTAGCAAGCTCGTTA 57.620 42.857 0.00 0.00 37.83 3.18
4316 4598 7.089538 TGTTAAGTGCATTGACATGTAAATGG 58.910 34.615 29.38 15.92 32.85 3.16
4339 4621 6.775629 TGGTGCTACCTTTTTATTGACTTCTT 59.224 34.615 6.83 0.00 39.58 2.52
4645 5704 8.950210 AGGTATTGATGTTTATTGTCACAAGAG 58.050 33.333 0.00 0.00 0.00 2.85
4667 5726 8.798859 AGAGAACTATATTTGTTGCATTCTGT 57.201 30.769 0.00 0.00 0.00 3.41
4781 5841 7.518731 TGAAAACACAGTTTTAGTCAAATGC 57.481 32.000 7.75 0.00 0.00 3.56
4782 5842 7.319646 TGAAAACACAGTTTTAGTCAAATGCT 58.680 30.769 7.75 0.00 0.00 3.79
4783 5843 7.487829 TGAAAACACAGTTTTAGTCAAATGCTC 59.512 33.333 7.75 0.00 0.00 4.26
4784 5844 6.449635 AACACAGTTTTAGTCAAATGCTCA 57.550 33.333 0.00 0.00 0.00 4.26
4785 5845 6.639632 ACACAGTTTTAGTCAAATGCTCAT 57.360 33.333 0.00 0.00 0.00 2.90
4786 5846 6.441274 ACACAGTTTTAGTCAAATGCTCATG 58.559 36.000 0.00 0.00 0.00 3.07
4787 5847 6.039717 ACACAGTTTTAGTCAAATGCTCATGT 59.960 34.615 0.00 0.00 0.00 3.21
4788 5848 6.361481 CACAGTTTTAGTCAAATGCTCATGTG 59.639 38.462 0.00 0.00 0.00 3.21
4789 5849 5.344128 CAGTTTTAGTCAAATGCTCATGTGC 59.656 40.000 12.78 12.78 0.00 4.57
4790 5850 3.745332 TTAGTCAAATGCTCATGTGCG 57.255 42.857 14.53 1.11 35.36 5.34
4791 5851 1.812235 AGTCAAATGCTCATGTGCGA 58.188 45.000 14.53 3.45 35.36 5.10
4792 5852 2.362736 AGTCAAATGCTCATGTGCGAT 58.637 42.857 14.53 6.99 35.36 4.58
4793 5853 2.353889 AGTCAAATGCTCATGTGCGATC 59.646 45.455 14.53 3.04 35.36 3.69
4794 5854 2.353889 GTCAAATGCTCATGTGCGATCT 59.646 45.455 14.53 0.00 35.36 2.75
4795 5855 2.353579 TCAAATGCTCATGTGCGATCTG 59.646 45.455 14.53 9.25 35.36 2.90
4796 5856 1.306148 AATGCTCATGTGCGATCTGG 58.694 50.000 14.53 0.00 35.36 3.86
4797 5857 1.164662 ATGCTCATGTGCGATCTGGC 61.165 55.000 14.53 0.00 35.36 4.85
4798 5858 1.523258 GCTCATGTGCGATCTGGCT 60.523 57.895 3.67 0.00 0.00 4.75
4799 5859 1.497223 GCTCATGTGCGATCTGGCTC 61.497 60.000 3.67 0.00 0.00 4.70
4800 5860 0.104487 CTCATGTGCGATCTGGCTCT 59.896 55.000 0.00 0.00 0.00 4.09
4801 5861 0.538584 TCATGTGCGATCTGGCTCTT 59.461 50.000 0.00 0.00 0.00 2.85
4802 5862 0.656259 CATGTGCGATCTGGCTCTTG 59.344 55.000 0.00 0.00 0.00 3.02
4803 5863 0.538584 ATGTGCGATCTGGCTCTTGA 59.461 50.000 0.00 0.00 0.00 3.02
4804 5864 0.321346 TGTGCGATCTGGCTCTTGAA 59.679 50.000 0.00 0.00 0.00 2.69
4805 5865 1.270785 TGTGCGATCTGGCTCTTGAAA 60.271 47.619 0.00 0.00 0.00 2.69
4806 5866 1.396301 GTGCGATCTGGCTCTTGAAAG 59.604 52.381 0.00 0.00 0.00 2.62
4807 5867 1.276138 TGCGATCTGGCTCTTGAAAGA 59.724 47.619 0.00 0.00 0.00 2.52
4808 5868 2.289631 TGCGATCTGGCTCTTGAAAGAA 60.290 45.455 0.00 0.00 34.03 2.52
4809 5869 2.744202 GCGATCTGGCTCTTGAAAGAAA 59.256 45.455 0.00 0.00 34.03 2.52
4810 5870 3.189287 GCGATCTGGCTCTTGAAAGAAAA 59.811 43.478 0.00 0.00 34.03 2.29
4811 5871 4.320494 GCGATCTGGCTCTTGAAAGAAAAA 60.320 41.667 0.00 0.00 34.03 1.94
4812 5872 5.149977 CGATCTGGCTCTTGAAAGAAAAAC 58.850 41.667 0.00 0.00 34.03 2.43
4813 5873 5.277974 CGATCTGGCTCTTGAAAGAAAAACA 60.278 40.000 0.00 0.00 34.03 2.83
4814 5874 5.248870 TCTGGCTCTTGAAAGAAAAACAC 57.751 39.130 0.00 0.00 34.03 3.32
4815 5875 4.097892 TCTGGCTCTTGAAAGAAAAACACC 59.902 41.667 0.00 0.00 34.03 4.16
4816 5876 4.023291 TGGCTCTTGAAAGAAAAACACCT 58.977 39.130 0.00 0.00 34.03 4.00
4973 6035 4.048470 GGCGGGGGCTTCTTCCTT 62.048 66.667 0.00 0.00 0.00 3.36
5230 6308 0.995024 CTGGTTGATTCTCTGGGGGT 59.005 55.000 0.00 0.00 0.00 4.95
5343 6422 1.302033 CCGTCTTGGTTGCTGCTCT 60.302 57.895 0.00 0.00 0.00 4.09
5367 6448 3.977244 GGGCAACTGCGGTGTTGG 61.977 66.667 0.00 0.00 45.19 3.77
5731 6869 2.829592 GGCCTATTGGGTCTCGGG 59.170 66.667 0.00 0.00 36.61 5.14
5886 7024 0.538287 GGTGCTCTTGGACAAAGCCT 60.538 55.000 12.97 0.00 36.16 4.58
5916 7054 1.077501 CTGCCCGGTCATCATGGTT 60.078 57.895 0.00 0.00 0.00 3.67
6199 7345 2.762875 GGGGCGGTAGTGCTAGGT 60.763 66.667 0.00 0.00 34.52 3.08
6295 7451 2.503331 TGTACTGGATGCTTGTGGTTG 58.497 47.619 0.00 0.00 0.00 3.77
6401 7652 9.603189 ACTATACAGTTATCCAGTTTATAGCCT 57.397 33.333 0.00 0.00 0.00 4.58
6404 7655 7.063934 ACAGTTATCCAGTTTATAGCCTACC 57.936 40.000 0.00 0.00 0.00 3.18
6405 7656 6.042897 ACAGTTATCCAGTTTATAGCCTACCC 59.957 42.308 0.00 0.00 0.00 3.69
6406 7657 5.546887 AGTTATCCAGTTTATAGCCTACCCC 59.453 44.000 0.00 0.00 0.00 4.95
6407 7658 3.424724 TCCAGTTTATAGCCTACCCCA 57.575 47.619 0.00 0.00 0.00 4.96
6408 7659 3.738434 TCCAGTTTATAGCCTACCCCAA 58.262 45.455 0.00 0.00 0.00 4.12
6409 7660 3.457012 TCCAGTTTATAGCCTACCCCAAC 59.543 47.826 0.00 0.00 0.00 3.77
6410 7661 3.458487 CCAGTTTATAGCCTACCCCAACT 59.542 47.826 0.00 0.00 0.00 3.16
6411 7662 4.079958 CCAGTTTATAGCCTACCCCAACTT 60.080 45.833 0.00 0.00 0.00 2.66
6412 7663 4.881850 CAGTTTATAGCCTACCCCAACTTG 59.118 45.833 0.00 0.00 0.00 3.16
6413 7664 4.538891 AGTTTATAGCCTACCCCAACTTGT 59.461 41.667 0.00 0.00 0.00 3.16
6414 7665 5.014860 AGTTTATAGCCTACCCCAACTTGTT 59.985 40.000 0.00 0.00 0.00 2.83
6415 7666 5.523883 TTATAGCCTACCCCAACTTGTTT 57.476 39.130 0.00 0.00 0.00 2.83
6416 7667 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
6427 7678 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
6428 7679 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
6429 7680 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
6430 7681 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
6431 7682 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
6432 7683 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
6433 7684 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
6434 7685 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
6435 7686 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
6436 7687 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
6437 7688 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
6438 7689 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
6439 7690 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
6440 7691 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
6441 7692 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
6442 7693 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
6443 7694 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
6444 7695 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
6445 7696 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
6683 7943 3.251004 AGCTGTTGAAGAAAATCGACCAC 59.749 43.478 0.00 0.00 33.50 4.16
6933 8197 2.365293 GGGAAGTGGCAAGACAACATTT 59.635 45.455 0.00 0.00 0.00 2.32
7010 8274 5.952347 ACTCTGTGGACATCAGTACAATAGA 59.048 40.000 0.00 0.00 41.16 1.98
7173 8441 4.646945 TGTTGCATTTTCTTGTCTTACCCA 59.353 37.500 0.00 0.00 0.00 4.51
7174 8442 5.127845 TGTTGCATTTTCTTGTCTTACCCAA 59.872 36.000 0.00 0.00 0.00 4.12
7175 8443 6.183360 TGTTGCATTTTCTTGTCTTACCCAAT 60.183 34.615 0.00 0.00 0.00 3.16
7176 8444 6.418057 TGCATTTTCTTGTCTTACCCAATT 57.582 33.333 0.00 0.00 0.00 2.32
7187 8725 9.177608 CTTGTCTTACCCAATTAATGATCAGAA 57.822 33.333 0.09 0.00 0.00 3.02
7257 8795 3.939740 TCATGAGGCAGCCTTCTTATT 57.060 42.857 17.46 0.00 31.76 1.40
7279 8817 1.267806 ACTGTGCCAATTCAGCTTTCG 59.732 47.619 0.00 0.00 35.37 3.46
7281 8819 1.001487 TGTGCCAATTCAGCTTTCGTG 60.001 47.619 0.00 0.00 0.00 4.35
7311 8849 7.014615 ACCTAACAATTTCAGAAAGTTCAGCAT 59.985 33.333 1.28 0.00 0.00 3.79
7312 8850 7.327761 CCTAACAATTTCAGAAAGTTCAGCATG 59.672 37.037 1.28 0.00 37.54 4.06
7315 8853 7.715657 ACAATTTCAGAAAGTTCAGCATGTTA 58.284 30.769 1.28 0.00 37.40 2.41
7316 8854 8.196771 ACAATTTCAGAAAGTTCAGCATGTTAA 58.803 29.630 1.28 0.00 37.40 2.01
7407 8946 2.033372 GTGCCTAGGAGGAACTAGACC 58.967 57.143 14.75 0.00 41.00 3.85
7470 9010 0.527817 GAACTCAGACATACCCGCGG 60.528 60.000 21.04 21.04 0.00 6.46
7536 9155 1.475403 GCTAAGGGCCCCTTTCTTTC 58.525 55.000 22.70 1.95 41.69 2.62
7559 9178 0.445829 TATGGCGTGTGCACATTTCG 59.554 50.000 24.69 22.17 45.35 3.46
7686 9878 5.640147 TGGATTCACATGGTAGGAAACTTT 58.360 37.500 0.00 0.00 43.67 2.66
7688 9880 5.710099 GGATTCACATGGTAGGAAACTTTCA 59.290 40.000 0.00 0.00 43.67 2.69
7690 9882 6.817765 TTCACATGGTAGGAAACTTTCATC 57.182 37.500 0.00 0.00 43.67 2.92
7691 9883 6.126863 TCACATGGTAGGAAACTTTCATCT 57.873 37.500 0.00 0.00 43.67 2.90
7692 9884 7.252612 TCACATGGTAGGAAACTTTCATCTA 57.747 36.000 0.00 0.00 43.67 1.98
7693 9885 7.861629 TCACATGGTAGGAAACTTTCATCTAT 58.138 34.615 0.00 0.00 43.67 1.98
7694 9886 7.770433 TCACATGGTAGGAAACTTTCATCTATG 59.230 37.037 0.00 8.47 43.67 2.23
7695 9887 7.554118 CACATGGTAGGAAACTTTCATCTATGT 59.446 37.037 0.00 8.96 43.67 2.29
7697 9889 8.960591 CATGGTAGGAAACTTTCATCTATGTTT 58.039 33.333 3.93 0.00 43.67 2.83
7735 10247 0.460311 AAGACGGGAACTAGATGGCG 59.540 55.000 0.00 0.00 0.00 5.69
7780 10292 1.901464 GCTGGGGGCGAACTTTTGA 60.901 57.895 0.00 0.00 0.00 2.69
7871 10384 3.955771 TGTAAGACGTTTTGGCAGTTC 57.044 42.857 0.83 0.00 0.00 3.01
7874 10387 4.336993 TGTAAGACGTTTTGGCAGTTCAAT 59.663 37.500 0.83 0.00 0.00 2.57
7877 10390 5.508200 AGACGTTTTGGCAGTTCAATTTA 57.492 34.783 0.00 0.00 0.00 1.40
7907 10422 8.903723 TGCCAAAACGTCTTATATTTAAAAACG 58.096 29.630 0.00 8.15 34.85 3.60
8054 10628 9.077885 AGTTCAAATAGGTGTGAAAATACATGT 57.922 29.630 2.69 2.69 35.60 3.21
8055 10629 9.691362 GTTCAAATAGGTGTGAAAATACATGTT 57.309 29.630 2.30 0.00 35.60 2.71
8056 10630 9.906660 TTCAAATAGGTGTGAAAATACATGTTC 57.093 29.630 2.30 0.00 30.93 3.18
8057 10631 8.519526 TCAAATAGGTGTGAAAATACATGTTCC 58.480 33.333 2.30 0.00 32.43 3.62
8058 10632 8.303156 CAAATAGGTGTGAAAATACATGTTCCA 58.697 33.333 2.30 0.00 32.43 3.53
8059 10633 5.705609 AGGTGTGAAAATACATGTTCCAC 57.294 39.130 2.30 6.07 32.43 4.02
8061 10635 6.539173 AGGTGTGAAAATACATGTTCCACTA 58.461 36.000 2.30 0.00 32.43 2.74
8064 10638 7.593644 GGTGTGAAAATACATGTTCCACTAAAC 59.406 37.037 2.30 0.00 32.43 2.01
8069 10643 8.691661 AAAATACATGTTCCACTAAACAGTCT 57.308 30.769 2.30 0.00 42.09 3.24
8078 10652 6.808321 TCCACTAAACAGTCTTAGGCATAT 57.192 37.500 0.00 0.00 33.85 1.78
8079 10653 7.195374 TCCACTAAACAGTCTTAGGCATATT 57.805 36.000 0.00 0.00 33.85 1.28
8140 10714 3.743521 TCTGCCAATGGATTTATCTCCG 58.256 45.455 2.05 0.00 38.21 4.63
8149 10723 4.703897 TGGATTTATCTCCGACCATGAAC 58.296 43.478 0.00 0.00 38.21 3.18
8177 10751 9.118300 AGACTCTTAGCAAAGATAAAATCATGG 57.882 33.333 0.00 0.00 40.92 3.66
8178 10752 8.230472 ACTCTTAGCAAAGATAAAATCATGGG 57.770 34.615 0.00 0.00 40.92 4.00
8249 10929 8.103948 AGTTATATCATTTTGCTAGCATGGTC 57.896 34.615 20.13 0.00 0.00 4.02
8279 10961 8.644374 AACTATCTCCTTCATAGTACTGATCC 57.356 38.462 5.39 0.00 36.26 3.36
8451 11133 1.654105 CTTCAGAAAACGATCCGGACG 59.346 52.381 20.16 20.16 0.00 4.79
8535 11217 5.918576 CGATATGGTACTTACAATGAGCGAA 59.081 40.000 0.00 0.00 0.00 4.70
8673 11400 3.463944 AGTGGAGTTTGACAAACCTACG 58.536 45.455 24.09 0.00 42.34 3.51
8837 11573 5.486526 TGCTTGCCTTGAAAAAGAAAAAGA 58.513 33.333 0.00 0.00 0.00 2.52
8838 11574 6.114767 TGCTTGCCTTGAAAAAGAAAAAGAT 58.885 32.000 0.00 0.00 0.00 2.40
8839 11575 7.271511 TGCTTGCCTTGAAAAAGAAAAAGATA 58.728 30.769 0.00 0.00 0.00 1.98
8840 11576 7.933033 TGCTTGCCTTGAAAAAGAAAAAGATAT 59.067 29.630 0.00 0.00 0.00 1.63
8841 11577 9.423061 GCTTGCCTTGAAAAAGAAAAAGATATA 57.577 29.630 0.00 0.00 0.00 0.86
8844 11580 9.912634 TGCCTTGAAAAAGAAAAAGATATACAG 57.087 29.630 0.00 0.00 0.00 2.74
8845 11581 9.914131 GCCTTGAAAAAGAAAAAGATATACAGT 57.086 29.630 0.00 0.00 0.00 3.55
8974 11712 1.101049 AAAACTCTGTGCACGGTGGG 61.101 55.000 26.67 18.95 0.00 4.61
9051 11789 7.776618 TTCCTCGCCAATAAGATATAGAAGA 57.223 36.000 0.00 0.00 0.00 2.87
9065 11803 7.013834 AGATATAGAAGACTAAACAGGAGGGG 58.986 42.308 0.00 0.00 32.04 4.79
9191 11929 3.004419 CAGACTATGCATGCAAAGGGATG 59.996 47.826 26.68 15.14 44.84 3.51
9201 11939 2.687370 GCAAAGGGATGCGATTGTTTT 58.313 42.857 0.00 0.00 36.45 2.43
9245 12241 3.749665 TTTTTCCTTGCCAGGTTCATG 57.250 42.857 3.35 0.00 41.69 3.07
9246 12242 2.673775 TTTCCTTGCCAGGTTCATGA 57.326 45.000 3.35 0.00 41.69 3.07
9247 12243 2.905415 TTCCTTGCCAGGTTCATGAT 57.095 45.000 3.35 0.00 41.69 2.45
9248 12244 2.905415 TCCTTGCCAGGTTCATGATT 57.095 45.000 3.35 0.00 41.69 2.57
9249 12245 2.726821 TCCTTGCCAGGTTCATGATTC 58.273 47.619 3.35 0.00 41.69 2.52
9250 12246 2.041485 TCCTTGCCAGGTTCATGATTCA 59.959 45.455 3.35 0.00 41.69 2.57
9251 12247 3.028850 CCTTGCCAGGTTCATGATTCAT 58.971 45.455 0.00 0.00 35.06 2.57
9252 12248 4.079844 TCCTTGCCAGGTTCATGATTCATA 60.080 41.667 3.35 0.00 41.69 2.15
9253 12249 4.277672 CCTTGCCAGGTTCATGATTCATAG 59.722 45.833 0.00 0.00 35.06 2.23
9254 12250 4.776435 TGCCAGGTTCATGATTCATAGA 57.224 40.909 0.00 0.00 0.00 1.98
9255 12251 5.114764 TGCCAGGTTCATGATTCATAGAA 57.885 39.130 0.00 3.60 0.00 2.10
9256 12252 5.698104 TGCCAGGTTCATGATTCATAGAAT 58.302 37.500 0.00 0.00 0.00 2.40
9257 12253 5.533528 TGCCAGGTTCATGATTCATAGAATG 59.466 40.000 0.00 3.23 0.00 2.67
9258 12254 5.564259 GCCAGGTTCATGATTCATAGAATGC 60.564 44.000 0.00 5.03 0.00 3.56
9259 12255 5.048224 CCAGGTTCATGATTCATAGAATGCC 60.048 44.000 0.00 5.10 0.00 4.40
9260 12256 5.048224 CAGGTTCATGATTCATAGAATGCCC 60.048 44.000 0.00 4.53 0.00 5.36
9261 12257 5.075493 GGTTCATGATTCATAGAATGCCCT 58.925 41.667 0.00 0.00 0.00 5.19
9262 12258 6.044754 AGGTTCATGATTCATAGAATGCCCTA 59.955 38.462 0.00 0.00 0.00 3.53
9263 12259 6.150140 GGTTCATGATTCATAGAATGCCCTAC 59.850 42.308 0.00 0.00 0.00 3.18
9264 12260 6.438186 TCATGATTCATAGAATGCCCTACA 57.562 37.500 0.00 0.00 0.00 2.74
9265 12261 6.470278 TCATGATTCATAGAATGCCCTACAG 58.530 40.000 0.00 0.00 0.00 2.74
9266 12262 5.233083 TGATTCATAGAATGCCCTACAGG 57.767 43.478 0.00 0.00 39.47 4.00
9267 12263 4.907269 TGATTCATAGAATGCCCTACAGGA 59.093 41.667 0.00 0.00 38.24 3.86
9268 12264 4.689612 TTCATAGAATGCCCTACAGGAC 57.310 45.455 0.00 0.00 38.24 3.85
9269 12265 3.928754 TCATAGAATGCCCTACAGGACT 58.071 45.455 0.00 0.00 38.24 3.85
9270 12266 3.898123 TCATAGAATGCCCTACAGGACTC 59.102 47.826 0.00 0.00 38.24 3.36
9271 12267 2.559381 AGAATGCCCTACAGGACTCT 57.441 50.000 0.00 0.00 38.24 3.24
9272 12268 3.689872 AGAATGCCCTACAGGACTCTA 57.310 47.619 0.00 0.00 38.24 2.43
9273 12269 3.301274 AGAATGCCCTACAGGACTCTAC 58.699 50.000 0.00 0.00 38.24 2.59
9274 12270 2.089600 ATGCCCTACAGGACTCTACC 57.910 55.000 0.00 0.00 38.24 3.18
9275 12271 1.008403 TGCCCTACAGGACTCTACCT 58.992 55.000 0.00 0.00 41.43 3.08
9285 12281 4.744795 AGGACTCTACCTGCATTAACTG 57.255 45.455 0.00 0.00 39.01 3.16
9298 12294 4.928661 CATTAACTGCTGTAGTGACACC 57.071 45.455 0.84 0.00 40.26 4.16
9299 12295 4.569943 CATTAACTGCTGTAGTGACACCT 58.430 43.478 0.84 0.00 40.26 4.00
9300 12296 5.720202 CATTAACTGCTGTAGTGACACCTA 58.280 41.667 0.84 0.00 40.26 3.08
9301 12297 5.995565 TTAACTGCTGTAGTGACACCTAT 57.004 39.130 0.84 0.00 40.26 2.57
9302 12298 4.457834 AACTGCTGTAGTGACACCTATC 57.542 45.455 0.84 0.00 40.26 2.08
9303 12299 2.761208 ACTGCTGTAGTGACACCTATCC 59.239 50.000 0.84 0.00 38.49 2.59
9304 12300 3.027412 CTGCTGTAGTGACACCTATCCT 58.973 50.000 0.84 0.00 0.00 3.24
9305 12301 2.760650 TGCTGTAGTGACACCTATCCTG 59.239 50.000 0.84 0.00 0.00 3.86
9306 12302 3.024547 GCTGTAGTGACACCTATCCTGA 58.975 50.000 0.84 0.00 0.00 3.86
9307 12303 3.447586 GCTGTAGTGACACCTATCCTGAA 59.552 47.826 0.84 0.00 0.00 3.02
9308 12304 4.081642 GCTGTAGTGACACCTATCCTGAAA 60.082 45.833 0.84 0.00 0.00 2.69
9309 12305 5.401531 TGTAGTGACACCTATCCTGAAAC 57.598 43.478 0.84 0.00 0.00 2.78
9310 12306 5.084519 TGTAGTGACACCTATCCTGAAACT 58.915 41.667 0.84 0.00 0.00 2.66
9311 12307 6.250711 TGTAGTGACACCTATCCTGAAACTA 58.749 40.000 0.84 0.00 0.00 2.24
9312 12308 5.923733 AGTGACACCTATCCTGAAACTAG 57.076 43.478 0.84 0.00 0.00 2.57
9313 12309 5.580998 AGTGACACCTATCCTGAAACTAGA 58.419 41.667 0.84 0.00 0.00 2.43
9314 12310 6.017192 AGTGACACCTATCCTGAAACTAGAA 58.983 40.000 0.84 0.00 0.00 2.10
9315 12311 6.071278 AGTGACACCTATCCTGAAACTAGAAC 60.071 42.308 0.84 0.00 0.00 3.01
9316 12312 6.017192 TGACACCTATCCTGAAACTAGAACT 58.983 40.000 0.00 0.00 0.00 3.01
9317 12313 6.071334 TGACACCTATCCTGAAACTAGAACTG 60.071 42.308 0.00 0.00 0.00 3.16
9318 12314 5.112686 CACCTATCCTGAAACTAGAACTGC 58.887 45.833 0.00 0.00 0.00 4.40
9319 12315 5.026790 ACCTATCCTGAAACTAGAACTGCT 58.973 41.667 0.00 0.00 0.00 4.24
9320 12316 5.485708 ACCTATCCTGAAACTAGAACTGCTT 59.514 40.000 0.00 0.00 0.00 3.91
9321 12317 6.013293 ACCTATCCTGAAACTAGAACTGCTTT 60.013 38.462 0.00 0.00 0.00 3.51
9322 12318 7.180408 ACCTATCCTGAAACTAGAACTGCTTTA 59.820 37.037 0.00 0.00 0.00 1.85
9323 12319 7.708752 CCTATCCTGAAACTAGAACTGCTTTAG 59.291 40.741 0.00 0.00 0.00 1.85
9324 12320 6.420913 TCCTGAAACTAGAACTGCTTTAGT 57.579 37.500 0.00 0.00 42.89 2.24
9325 12321 6.223852 TCCTGAAACTAGAACTGCTTTAGTG 58.776 40.000 0.00 0.00 40.26 2.74
9326 12322 5.992217 CCTGAAACTAGAACTGCTTTAGTGT 59.008 40.000 0.00 0.00 40.26 3.55
9327 12323 6.146347 CCTGAAACTAGAACTGCTTTAGTGTC 59.854 42.308 0.00 0.00 40.26 3.67
9328 12324 6.578944 TGAAACTAGAACTGCTTTAGTGTCA 58.421 36.000 0.00 0.00 38.62 3.58
9329 12325 6.479001 TGAAACTAGAACTGCTTTAGTGTCAC 59.521 38.462 0.00 0.00 36.96 3.67
9330 12326 4.884247 ACTAGAACTGCTTTAGTGTCACC 58.116 43.478 0.00 0.00 40.26 4.02
9331 12327 3.127425 AGAACTGCTTTAGTGTCACCC 57.873 47.619 0.00 0.00 40.26 4.61
9332 12328 2.706190 AGAACTGCTTTAGTGTCACCCT 59.294 45.455 0.00 0.00 40.26 4.34
9333 12329 2.550830 ACTGCTTTAGTGTCACCCTG 57.449 50.000 0.00 0.00 38.49 4.45
9334 12330 1.768870 ACTGCTTTAGTGTCACCCTGT 59.231 47.619 0.00 0.00 38.49 4.00
9335 12331 2.969950 ACTGCTTTAGTGTCACCCTGTA 59.030 45.455 0.00 0.00 38.49 2.74
9336 12332 3.583086 ACTGCTTTAGTGTCACCCTGTAT 59.417 43.478 0.00 0.00 38.49 2.29
9337 12333 4.184629 CTGCTTTAGTGTCACCCTGTATC 58.815 47.826 0.00 0.00 0.00 2.24
9338 12334 3.838317 TGCTTTAGTGTCACCCTGTATCT 59.162 43.478 0.00 0.00 0.00 1.98
9339 12335 4.286032 TGCTTTAGTGTCACCCTGTATCTT 59.714 41.667 0.00 0.00 0.00 2.40
9340 12336 4.631813 GCTTTAGTGTCACCCTGTATCTTG 59.368 45.833 0.00 0.00 0.00 3.02
9341 12337 2.770164 AGTGTCACCCTGTATCTTGC 57.230 50.000 0.00 0.00 0.00 4.01
9342 12338 2.260822 AGTGTCACCCTGTATCTTGCT 58.739 47.619 0.00 0.00 0.00 3.91
9343 12339 2.639839 AGTGTCACCCTGTATCTTGCTT 59.360 45.455 0.00 0.00 0.00 3.91
9344 12340 2.744202 GTGTCACCCTGTATCTTGCTTG 59.256 50.000 0.00 0.00 0.00 4.01
9345 12341 1.740025 GTCACCCTGTATCTTGCTTGC 59.260 52.381 0.00 0.00 0.00 4.01
9346 12342 1.350684 TCACCCTGTATCTTGCTTGCA 59.649 47.619 0.00 0.00 0.00 4.08
9347 12343 2.025981 TCACCCTGTATCTTGCTTGCAT 60.026 45.455 0.00 0.00 0.00 3.96
9348 12344 2.098607 CACCCTGTATCTTGCTTGCATG 59.901 50.000 0.00 0.00 0.00 4.06
9349 12345 1.066605 CCCTGTATCTTGCTTGCATGC 59.933 52.381 17.19 17.19 0.00 4.06
9350 12346 2.022195 CCTGTATCTTGCTTGCATGCT 58.978 47.619 23.31 7.59 0.00 3.79
9351 12347 2.426024 CCTGTATCTTGCTTGCATGCTT 59.574 45.455 23.31 9.78 0.00 3.91
9352 12348 3.435566 CTGTATCTTGCTTGCATGCTTG 58.564 45.455 23.31 15.91 0.00 4.01
9353 12349 2.821378 TGTATCTTGCTTGCATGCTTGT 59.179 40.909 23.31 10.69 0.00 3.16
9354 12350 4.009002 TGTATCTTGCTTGCATGCTTGTA 58.991 39.130 23.31 8.18 0.00 2.41
9355 12351 4.641541 TGTATCTTGCTTGCATGCTTGTAT 59.358 37.500 23.31 14.12 0.00 2.29
9356 12352 5.821995 TGTATCTTGCTTGCATGCTTGTATA 59.178 36.000 23.31 13.30 0.00 1.47
9357 12353 5.840243 ATCTTGCTTGCATGCTTGTATAA 57.160 34.783 23.31 8.92 0.00 0.98
9358 12354 5.641783 TCTTGCTTGCATGCTTGTATAAA 57.358 34.783 23.31 8.28 0.00 1.40
9359 12355 6.211587 TCTTGCTTGCATGCTTGTATAAAT 57.788 33.333 23.31 0.00 0.00 1.40
9360 12356 6.632909 TCTTGCTTGCATGCTTGTATAAATT 58.367 32.000 23.31 0.00 0.00 1.82
9361 12357 7.770201 TCTTGCTTGCATGCTTGTATAAATTA 58.230 30.769 23.31 0.00 0.00 1.40
9362 12358 8.249638 TCTTGCTTGCATGCTTGTATAAATTAA 58.750 29.630 23.31 5.91 0.00 1.40
9363 12359 7.990541 TGCTTGCATGCTTGTATAAATTAAG 57.009 32.000 23.31 10.15 0.00 1.85
9364 12360 7.546358 TGCTTGCATGCTTGTATAAATTAAGT 58.454 30.769 23.31 0.00 0.00 2.24
9365 12361 7.488792 TGCTTGCATGCTTGTATAAATTAAGTG 59.511 33.333 23.31 0.00 0.00 3.16
9366 12362 7.515684 GCTTGCATGCTTGTATAAATTAAGTGC 60.516 37.037 20.33 0.00 0.00 4.40
9367 12363 6.861144 TGCATGCTTGTATAAATTAAGTGCA 58.139 32.000 20.33 0.00 33.69 4.57
9368 12364 7.318893 TGCATGCTTGTATAAATTAAGTGCAA 58.681 30.769 20.33 0.00 33.39 4.08
9369 12365 7.816513 TGCATGCTTGTATAAATTAAGTGCAAA 59.183 29.630 20.33 0.00 33.39 3.68
9370 12366 8.323140 GCATGCTTGTATAAATTAAGTGCAAAG 58.677 33.333 11.37 0.00 0.00 2.77
9371 12367 9.357652 CATGCTTGTATAAATTAAGTGCAAAGT 57.642 29.630 0.00 0.00 0.00 2.66
9372 12368 8.964420 TGCTTGTATAAATTAAGTGCAAAGTC 57.036 30.769 0.00 0.00 0.00 3.01
9373 12369 8.792633 TGCTTGTATAAATTAAGTGCAAAGTCT 58.207 29.630 0.00 0.00 0.00 3.24
9381 12377 8.685838 AAATTAAGTGCAAAGTCTAGTAACCA 57.314 30.769 0.00 0.00 0.00 3.67
9382 12378 8.863872 AATTAAGTGCAAAGTCTAGTAACCAT 57.136 30.769 0.00 0.00 0.00 3.55
9383 12379 7.667043 TTAAGTGCAAAGTCTAGTAACCATG 57.333 36.000 0.00 0.00 0.00 3.66
9384 12380 4.579869 AGTGCAAAGTCTAGTAACCATGG 58.420 43.478 11.19 11.19 0.00 3.66
9385 12381 4.041691 AGTGCAAAGTCTAGTAACCATGGT 59.958 41.667 13.00 13.00 0.00 3.55
9386 12382 4.154195 GTGCAAAGTCTAGTAACCATGGTG 59.846 45.833 20.60 5.35 0.00 4.17
9387 12383 3.127030 GCAAAGTCTAGTAACCATGGTGC 59.873 47.826 20.60 14.75 0.00 5.01
9388 12384 4.579869 CAAAGTCTAGTAACCATGGTGCT 58.420 43.478 20.60 21.07 0.00 4.40
9389 12385 4.473477 AAGTCTAGTAACCATGGTGCTC 57.527 45.455 20.60 11.88 0.00 4.26
9390 12386 2.766828 AGTCTAGTAACCATGGTGCTCC 59.233 50.000 20.60 11.01 0.00 4.70
9405 12401 3.156157 CTCCAGAGCAGCAAGAAGG 57.844 57.895 0.00 0.00 0.00 3.46
9406 12402 0.392729 CTCCAGAGCAGCAAGAAGGG 60.393 60.000 0.00 0.00 0.00 3.95
9407 12403 1.378250 CCAGAGCAGCAAGAAGGGG 60.378 63.158 0.00 0.00 0.00 4.79
9408 12404 1.681666 CAGAGCAGCAAGAAGGGGA 59.318 57.895 0.00 0.00 0.00 4.81
9409 12405 0.676151 CAGAGCAGCAAGAAGGGGAC 60.676 60.000 0.00 0.00 0.00 4.46
9411 12407 0.905357 GAGCAGCAAGAAGGGGACTA 59.095 55.000 0.00 0.00 42.68 2.59
9412 12408 1.279271 GAGCAGCAAGAAGGGGACTAA 59.721 52.381 0.00 0.00 42.68 2.24
9413 12409 1.918957 AGCAGCAAGAAGGGGACTAAT 59.081 47.619 0.00 0.00 42.68 1.73
9414 12410 2.310052 AGCAGCAAGAAGGGGACTAATT 59.690 45.455 0.00 0.00 42.68 1.40
9415 12411 2.424956 GCAGCAAGAAGGGGACTAATTG 59.575 50.000 0.00 0.00 42.68 2.32
9416 12412 3.873801 GCAGCAAGAAGGGGACTAATTGA 60.874 47.826 0.00 0.00 42.68 2.57
9417 12413 4.335416 CAGCAAGAAGGGGACTAATTGAA 58.665 43.478 0.00 0.00 42.68 2.69
9418 12414 4.766891 CAGCAAGAAGGGGACTAATTGAAA 59.233 41.667 0.00 0.00 42.68 2.69
9419 12415 4.767409 AGCAAGAAGGGGACTAATTGAAAC 59.233 41.667 0.00 0.00 42.68 2.78
9420 12416 4.082190 GCAAGAAGGGGACTAATTGAAACC 60.082 45.833 0.00 0.00 42.68 3.27
9421 12417 5.076873 CAAGAAGGGGACTAATTGAAACCA 58.923 41.667 0.00 0.00 42.68 3.67
9422 12418 5.536497 AGAAGGGGACTAATTGAAACCAT 57.464 39.130 0.00 0.00 42.68 3.55
9423 12419 5.264395 AGAAGGGGACTAATTGAAACCATG 58.736 41.667 0.00 0.00 42.68 3.66
9424 12420 4.675063 AGGGGACTAATTGAAACCATGT 57.325 40.909 0.00 0.00 40.61 3.21
9425 12421 5.010708 AGGGGACTAATTGAAACCATGTT 57.989 39.130 0.00 0.00 40.61 2.71
9426 12422 5.402630 AGGGGACTAATTGAAACCATGTTT 58.597 37.500 0.00 0.00 40.61 2.83
9427 12423 6.557568 AGGGGACTAATTGAAACCATGTTTA 58.442 36.000 0.00 0.00 40.61 2.01
9428 12424 6.663523 AGGGGACTAATTGAAACCATGTTTAG 59.336 38.462 0.00 0.00 40.61 1.85
9429 12425 6.436218 GGGGACTAATTGAAACCATGTTTAGT 59.564 38.462 0.00 0.00 33.77 2.24
9430 12426 7.039293 GGGGACTAATTGAAACCATGTTTAGTT 60.039 37.037 0.00 0.00 31.86 2.24
9431 12427 8.364894 GGGACTAATTGAAACCATGTTTAGTTT 58.635 33.333 0.00 0.00 38.85 2.66
9432 12428 9.758651 GGACTAATTGAAACCATGTTTAGTTTT 57.241 29.630 0.00 0.00 36.36 2.43
9442 12438 9.892130 AAACCATGTTTAGTTTTGTAATTTCCA 57.108 25.926 0.00 0.00 32.36 3.53
9443 12439 9.892130 AACCATGTTTAGTTTTGTAATTTCCAA 57.108 25.926 0.00 0.00 0.00 3.53
9452 12448 8.924511 AGTTTTGTAATTTCCAATCTGAGAGA 57.075 30.769 0.00 0.00 0.00 3.10
9453 12449 9.007901 AGTTTTGTAATTTCCAATCTGAGAGAG 57.992 33.333 0.00 0.00 0.00 3.20
9454 12450 6.992063 TTGTAATTTCCAATCTGAGAGAGC 57.008 37.500 0.00 0.00 0.00 4.09
9455 12451 5.111989 TGTAATTTCCAATCTGAGAGAGCG 58.888 41.667 0.00 0.00 0.00 5.03
9456 12452 2.680312 TTTCCAATCTGAGAGAGCGG 57.320 50.000 0.00 0.00 0.00 5.52
9457 12453 0.176680 TTCCAATCTGAGAGAGCGGC 59.823 55.000 0.00 0.00 0.00 6.53
9458 12454 0.972471 TCCAATCTGAGAGAGCGGCA 60.972 55.000 1.45 0.00 0.00 5.69
9459 12455 0.809241 CCAATCTGAGAGAGCGGCAC 60.809 60.000 1.45 0.00 0.00 5.01
9460 12456 0.108472 CAATCTGAGAGAGCGGCACA 60.108 55.000 1.45 0.00 0.00 4.57
9461 12457 0.175302 AATCTGAGAGAGCGGCACAG 59.825 55.000 1.45 4.02 0.00 3.66
9462 12458 0.969917 ATCTGAGAGAGCGGCACAGT 60.970 55.000 1.45 0.00 0.00 3.55
9463 12459 1.445754 CTGAGAGAGCGGCACAGTG 60.446 63.158 1.45 0.00 0.00 3.66
9464 12460 1.871126 CTGAGAGAGCGGCACAGTGA 61.871 60.000 4.15 0.00 0.00 3.41
9465 12461 1.445238 GAGAGAGCGGCACAGTGAC 60.445 63.158 4.15 0.00 0.00 3.67
9466 12462 2.433318 GAGAGCGGCACAGTGACC 60.433 66.667 4.15 4.30 0.00 4.02
9731 12770 9.937175 GTCTGGACACTAATTTGAATATAAAGC 57.063 33.333 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 188 1.569548 ACCTCTCTCAACCCCTCGATA 59.430 52.381 0.00 0.00 0.00 2.92
226 227 1.401905 GCCCTCCTAAACTGAAATGCG 59.598 52.381 0.00 0.00 0.00 4.73
232 233 2.840511 TGGTATGCCCTCCTAAACTGA 58.159 47.619 0.00 0.00 0.00 3.41
528 529 5.694006 AGAAGCTACATGAATTCATCGCTAC 59.306 40.000 25.01 13.49 33.25 3.58
603 604 6.594788 TGCAATCTTTTCTCCAGCTTTAAT 57.405 33.333 0.00 0.00 0.00 1.40
605 606 6.594788 ATTGCAATCTTTTCTCCAGCTTTA 57.405 33.333 5.99 0.00 0.00 1.85
644 645 1.499049 AAAGCGTCGACTTTCCTGAC 58.501 50.000 14.70 0.00 34.84 3.51
756 850 4.174009 ACATGTCTAAATGTCCGAACTCG 58.826 43.478 0.00 0.00 35.92 4.18
763 857 7.696992 TCCCTTTAAACATGTCTAAATGTCC 57.303 36.000 4.86 0.00 39.89 4.02
784 878 2.754946 TAACGACAGACCATGTTCCC 57.245 50.000 0.00 0.00 44.17 3.97
886 1036 7.312657 TCTGAAATGTCTATGCAAAGATCAC 57.687 36.000 0.00 0.00 0.00 3.06
973 1124 8.840321 CGGTGATCCAAAGATAATATTGTCTTT 58.160 33.333 25.90 25.90 45.55 2.52
985 1136 2.483714 CGTCCATCGGTGATCCAAAGAT 60.484 50.000 0.00 0.00 35.71 2.40
1065 1216 7.720957 CCAATTTGAGTACAATCTCCATATGGA 59.279 37.037 23.17 23.17 37.60 3.41
1281 1434 6.483640 CCTGTTACAGAGAGCTTTGTAAAACT 59.516 38.462 14.66 0.00 40.35 2.66
1297 1450 6.018425 GCACTCATGACATATTCCTGTTACAG 60.018 42.308 5.22 5.22 0.00 2.74
1347 1500 3.312736 AAATCAACTTGGTGGGTCACT 57.687 42.857 0.00 0.00 34.40 3.41
1623 1785 4.561500 TTAAGATCGGAAACACCCATCA 57.438 40.909 0.00 0.00 34.64 3.07
1648 1810 3.988819 AGCTCTTTGAGAGTGTGAGTTC 58.011 45.455 6.80 0.00 44.12 3.01
1678 1840 4.437682 ACCAACTGTCTCCTTGATCAAA 57.562 40.909 9.88 0.00 0.00 2.69
1680 1842 5.248248 TGAATACCAACTGTCTCCTTGATCA 59.752 40.000 0.00 0.00 0.00 2.92
2042 2210 6.855763 TGAATTGAGCAACTGGGAAAATAT 57.144 33.333 0.00 0.00 0.00 1.28
2101 2269 2.306219 ACAAAGAACCCTTCCTAGAGGC 59.694 50.000 0.00 0.00 35.37 4.70
2721 2933 2.747855 CCCAAGACCTTCGCCTGC 60.748 66.667 0.00 0.00 0.00 4.85
3039 3261 0.892358 CTGCCAGAATGTGCCACACT 60.892 55.000 0.00 0.00 35.11 3.55
3040 3262 1.174712 ACTGCCAGAATGTGCCACAC 61.175 55.000 0.00 0.00 32.37 3.82
3041 3263 1.151221 ACTGCCAGAATGTGCCACA 59.849 52.632 0.00 0.00 32.37 4.17
3169 3392 4.176120 GGATCCATCCAAGAAATCCACT 57.824 45.455 6.95 0.00 46.38 4.00
3183 3407 3.244911 ACCAAGTTTTCACTCGGATCCAT 60.245 43.478 13.41 0.00 30.58 3.41
3184 3408 2.105821 ACCAAGTTTTCACTCGGATCCA 59.894 45.455 13.41 0.00 30.58 3.41
3310 3539 4.100189 CCGATCAACTGATCTAGGGTTTCT 59.900 45.833 15.79 0.00 46.58 2.52
3338 3567 1.453015 GGGTACATGAATGCCGCCA 60.453 57.895 0.00 0.00 0.00 5.69
3711 3949 5.220931 GCAGCCAAACCTAACATCTAAGATG 60.221 44.000 0.00 0.00 0.00 2.90
3712 3950 4.884164 GCAGCCAAACCTAACATCTAAGAT 59.116 41.667 0.00 0.00 0.00 2.40
3845 4083 9.341078 AGTTAATGGAAACTTTGAATGCAAAAT 57.659 25.926 0.00 0.00 42.96 1.82
3884 4122 7.313740 AGATAGTACCTCTGCATGATCAAAT 57.686 36.000 0.00 0.00 0.00 2.32
3990 4228 4.822896 TCAAACGCCCTTATTGTTGTAGTT 59.177 37.500 0.00 0.00 0.00 2.24
3991 4229 4.391155 TCAAACGCCCTTATTGTTGTAGT 58.609 39.130 0.00 0.00 0.00 2.73
4050 4288 4.508461 TGAACTGGCATTCTTGTCAATG 57.492 40.909 9.83 0.00 36.93 2.82
4069 4307 8.306038 AGTTGCTGCAAAATTGTAGAAATATGA 58.694 29.630 17.80 0.00 39.99 2.15
4165 4403 5.048643 GGCTAAAAGTTCCTTGAGGAGAAAC 60.049 44.000 0.00 0.00 46.36 2.78
4234 4501 2.543848 CGAGCTTGCTACACAACTTTCA 59.456 45.455 0.00 0.00 33.68 2.69
4243 4510 3.390135 GCCATATAACGAGCTTGCTACA 58.610 45.455 0.00 0.00 0.00 2.74
4258 4525 2.321719 TGCAAGCATCAATGGCCATAT 58.678 42.857 21.15 6.96 0.00 1.78
4296 4578 4.618927 GCACCATTTACATGTCAATGCACT 60.619 41.667 22.09 8.09 37.29 4.40
4316 4598 7.649057 ACAAGAAGTCAATAAAAAGGTAGCAC 58.351 34.615 0.00 0.00 0.00 4.40
4339 4621 4.759693 ACAAAAGTGTGTCAGAACTCAACA 59.240 37.500 0.00 0.00 36.31 3.33
4415 4718 8.926715 ACTTCAAATAAGTTCAGAAAAACCAC 57.073 30.769 0.00 0.00 0.00 4.16
4526 5483 7.873505 AGAAAGTATTTGGAGTCAGTAAGTCAC 59.126 37.037 0.00 0.00 39.27 3.67
4645 5704 6.907212 CCGACAGAATGCAACAAATATAGTTC 59.093 38.462 0.00 0.00 42.53 3.01
4763 5823 6.361481 CACATGAGCATTTGACTAAAACTGTG 59.639 38.462 0.00 0.00 0.00 3.66
4764 5824 6.441274 CACATGAGCATTTGACTAAAACTGT 58.559 36.000 0.00 0.00 0.00 3.55
4775 5835 2.540973 CCAGATCGCACATGAGCATTTG 60.541 50.000 15.56 11.77 0.00 2.32
4779 5839 1.816679 GCCAGATCGCACATGAGCA 60.817 57.895 15.56 3.10 0.00 4.26
4780 5840 1.497223 GAGCCAGATCGCACATGAGC 61.497 60.000 4.89 4.89 0.00 4.26
4781 5841 0.104487 AGAGCCAGATCGCACATGAG 59.896 55.000 0.00 0.00 0.00 2.90
4782 5842 0.538584 AAGAGCCAGATCGCACATGA 59.461 50.000 0.00 0.00 0.00 3.07
4783 5843 0.656259 CAAGAGCCAGATCGCACATG 59.344 55.000 0.00 0.00 0.00 3.21
4784 5844 0.538584 TCAAGAGCCAGATCGCACAT 59.461 50.000 0.00 0.00 0.00 3.21
4785 5845 0.321346 TTCAAGAGCCAGATCGCACA 59.679 50.000 0.00 0.00 0.00 4.57
4786 5846 1.396301 CTTTCAAGAGCCAGATCGCAC 59.604 52.381 0.00 0.00 0.00 5.34
4787 5847 1.276138 TCTTTCAAGAGCCAGATCGCA 59.724 47.619 0.00 0.00 0.00 5.10
4788 5848 2.015736 TCTTTCAAGAGCCAGATCGC 57.984 50.000 0.00 0.00 0.00 4.58
4789 5849 5.149977 GTTTTTCTTTCAAGAGCCAGATCG 58.850 41.667 0.00 0.00 36.22 3.69
4790 5850 5.917447 GTGTTTTTCTTTCAAGAGCCAGATC 59.083 40.000 0.00 0.00 36.22 2.75
4791 5851 5.221322 GGTGTTTTTCTTTCAAGAGCCAGAT 60.221 40.000 0.00 0.00 36.22 2.90
4792 5852 4.097892 GGTGTTTTTCTTTCAAGAGCCAGA 59.902 41.667 0.00 0.00 36.22 3.86
4793 5853 4.098501 AGGTGTTTTTCTTTCAAGAGCCAG 59.901 41.667 0.00 0.00 36.22 4.85
4794 5854 4.023291 AGGTGTTTTTCTTTCAAGAGCCA 58.977 39.130 0.00 0.00 36.22 4.75
4795 5855 4.499865 GGAGGTGTTTTTCTTTCAAGAGCC 60.500 45.833 0.00 0.00 36.22 4.70
4796 5856 4.499865 GGGAGGTGTTTTTCTTTCAAGAGC 60.500 45.833 0.00 0.00 36.22 4.09
4797 5857 4.038042 GGGGAGGTGTTTTTCTTTCAAGAG 59.962 45.833 0.00 0.00 36.22 2.85
4798 5858 3.958147 GGGGAGGTGTTTTTCTTTCAAGA 59.042 43.478 0.00 0.00 0.00 3.02
4799 5859 3.069586 GGGGGAGGTGTTTTTCTTTCAAG 59.930 47.826 0.00 0.00 0.00 3.02
4800 5860 3.035363 GGGGGAGGTGTTTTTCTTTCAA 58.965 45.455 0.00 0.00 0.00 2.69
4801 5861 2.673258 GGGGGAGGTGTTTTTCTTTCA 58.327 47.619 0.00 0.00 0.00 2.69
4802 5862 1.611977 CGGGGGAGGTGTTTTTCTTTC 59.388 52.381 0.00 0.00 0.00 2.62
4803 5863 1.215924 TCGGGGGAGGTGTTTTTCTTT 59.784 47.619 0.00 0.00 0.00 2.52
4804 5864 0.848053 TCGGGGGAGGTGTTTTTCTT 59.152 50.000 0.00 0.00 0.00 2.52
4805 5865 0.109913 GTCGGGGGAGGTGTTTTTCT 59.890 55.000 0.00 0.00 0.00 2.52
4806 5866 0.892358 GGTCGGGGGAGGTGTTTTTC 60.892 60.000 0.00 0.00 0.00 2.29
4807 5867 1.152138 GGTCGGGGGAGGTGTTTTT 59.848 57.895 0.00 0.00 0.00 1.94
4808 5868 2.837326 GGGTCGGGGGAGGTGTTTT 61.837 63.158 0.00 0.00 0.00 2.43
4809 5869 3.254617 GGGTCGGGGGAGGTGTTT 61.255 66.667 0.00 0.00 0.00 2.83
4870 5930 2.042230 GGAGGTTAGAGGCGGGGA 60.042 66.667 0.00 0.00 0.00 4.81
5148 6219 1.079127 CACCGACGCCCAGATCTTT 60.079 57.895 0.00 0.00 0.00 2.52
5218 6296 0.253820 ACCATCCACCCCCAGAGAAT 60.254 55.000 0.00 0.00 0.00 2.40
5357 6436 2.033448 GGACCATCCAACACCGCA 59.967 61.111 0.00 0.00 36.28 5.69
5916 7054 4.164087 AACCACGCCGTCCACACA 62.164 61.111 0.00 0.00 0.00 3.72
6231 7377 1.078072 ACGCACACACCCAAGACAA 60.078 52.632 0.00 0.00 0.00 3.18
6379 7630 7.234166 GGGTAGGCTATAAACTGGATAACTGTA 59.766 40.741 0.00 0.00 0.00 2.74
6380 7631 6.042897 GGGTAGGCTATAAACTGGATAACTGT 59.957 42.308 0.00 0.00 0.00 3.55
6381 7632 6.465084 GGGTAGGCTATAAACTGGATAACTG 58.535 44.000 0.00 0.00 0.00 3.16
6382 7633 5.546887 GGGGTAGGCTATAAACTGGATAACT 59.453 44.000 0.00 0.00 0.00 2.24
6383 7634 5.308759 TGGGGTAGGCTATAAACTGGATAAC 59.691 44.000 0.00 0.00 0.00 1.89
6384 7635 5.478844 TGGGGTAGGCTATAAACTGGATAA 58.521 41.667 0.00 0.00 0.00 1.75
6385 7636 5.095903 TGGGGTAGGCTATAAACTGGATA 57.904 43.478 0.00 0.00 0.00 2.59
6386 7637 3.949430 TGGGGTAGGCTATAAACTGGAT 58.051 45.455 0.00 0.00 0.00 3.41
6387 7638 3.424724 TGGGGTAGGCTATAAACTGGA 57.575 47.619 0.00 0.00 0.00 3.86
6388 7639 3.458487 AGTTGGGGTAGGCTATAAACTGG 59.542 47.826 0.00 0.00 0.00 4.00
6389 7640 4.772886 AGTTGGGGTAGGCTATAAACTG 57.227 45.455 0.00 0.00 0.00 3.16
6390 7641 4.538891 ACAAGTTGGGGTAGGCTATAAACT 59.461 41.667 7.96 3.19 0.00 2.66
6391 7642 4.851843 ACAAGTTGGGGTAGGCTATAAAC 58.148 43.478 7.96 0.87 0.00 2.01
6392 7643 5.523883 AACAAGTTGGGGTAGGCTATAAA 57.476 39.130 7.96 0.00 0.00 1.40
6393 7644 5.258051 CAAACAAGTTGGGGTAGGCTATAA 58.742 41.667 7.96 0.00 33.18 0.98
6394 7645 4.850680 CAAACAAGTTGGGGTAGGCTATA 58.149 43.478 7.96 0.00 33.18 1.31
6395 7646 3.697166 CAAACAAGTTGGGGTAGGCTAT 58.303 45.455 7.96 0.00 33.18 2.97
6396 7647 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
6397 7648 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
6406 7657 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
6407 7658 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
6408 7659 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
6409 7660 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
6410 7661 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
6411 7662 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
6412 7663 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
6413 7664 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
6414 7665 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
6415 7666 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
6416 7667 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
6417 7668 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
6418 7669 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
6419 7670 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
6420 7671 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
6421 7672 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
6422 7673 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
6423 7674 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
6424 7675 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
6425 7676 4.740741 AAACAACAACAACAACAAAGCC 57.259 36.364 0.00 0.00 0.00 4.35
6426 7677 6.074034 ACTGTAAACAACAACAACAACAAAGC 60.074 34.615 0.00 0.00 37.74 3.51
6427 7678 7.401484 ACTGTAAACAACAACAACAACAAAG 57.599 32.000 0.00 0.00 37.74 2.77
6428 7679 7.772332 AACTGTAAACAACAACAACAACAAA 57.228 28.000 0.00 0.00 37.74 2.83
6429 7680 9.130312 GATAACTGTAAACAACAACAACAACAA 57.870 29.630 0.00 0.00 37.74 2.83
6430 7681 7.755822 GGATAACTGTAAACAACAACAACAACA 59.244 33.333 0.00 0.00 37.74 3.33
6431 7682 7.755822 TGGATAACTGTAAACAACAACAACAAC 59.244 33.333 0.00 0.00 37.74 3.32
6432 7683 7.827701 TGGATAACTGTAAACAACAACAACAA 58.172 30.769 0.00 0.00 37.74 2.83
6433 7684 7.121463 ACTGGATAACTGTAAACAACAACAACA 59.879 33.333 0.00 0.00 37.74 3.33
6434 7685 7.477494 ACTGGATAACTGTAAACAACAACAAC 58.523 34.615 0.00 0.00 37.74 3.32
6435 7686 7.633193 ACTGGATAACTGTAAACAACAACAA 57.367 32.000 0.00 0.00 37.74 2.83
6436 7687 7.633193 AACTGGATAACTGTAAACAACAACA 57.367 32.000 0.00 0.00 37.74 3.33
6439 7690 9.562408 TCATAAACTGGATAACTGTAAACAACA 57.438 29.630 0.00 0.00 36.42 3.33
6683 7943 0.918983 TCTTGGGGCCAATCTGGTAG 59.081 55.000 4.39 0.00 40.46 3.18
6797 8061 5.403466 TGTCAGATGAAAATCGATCGCATAG 59.597 40.000 11.09 4.56 0.00 2.23
6933 8197 4.277174 ACAAGTCGAAACAATGCACCAATA 59.723 37.500 0.00 0.00 0.00 1.90
7010 8274 1.710013 CGAACGCAGGTCATGTAAGT 58.290 50.000 0.00 0.00 0.00 2.24
7217 8755 9.715123 CTCATGATTAAACATTGCATTACGTTA 57.285 29.630 0.00 0.00 0.00 3.18
7257 8795 3.058293 CGAAAGCTGAATTGGCACAGTAA 60.058 43.478 5.61 0.00 42.39 2.24
7334 8872 8.966868 TGTAATTTGAGATTCCCCTAATTCAAC 58.033 33.333 0.00 0.00 30.85 3.18
7407 8946 7.459486 CCTATTTCTTCGATCAGTGAAAAGTG 58.541 38.462 0.00 0.00 33.09 3.16
7470 9010 0.535797 GTACACTCCTACCAGGCCAC 59.464 60.000 5.01 0.00 34.61 5.01
7500 9040 4.699257 CCTTAGCCTAGATCAATTGATGGC 59.301 45.833 28.48 28.48 39.85 4.40
7530 9148 3.316588 TGCACACGCCATAAAAGAAAGAA 59.683 39.130 0.00 0.00 37.32 2.52
7536 9155 2.634982 ATGTGCACACGCCATAAAAG 57.365 45.000 24.37 0.00 37.32 2.27
7597 9636 5.439721 TGTCAAGAACCTGCAGCATAATAT 58.560 37.500 8.66 0.00 0.00 1.28
7702 9894 7.722363 AGTTCCCGTCTTCAAATAACAAAAAT 58.278 30.769 0.00 0.00 0.00 1.82
7717 9909 1.392710 CCGCCATCTAGTTCCCGTCT 61.393 60.000 0.00 0.00 0.00 4.18
7718 9910 1.067582 CCGCCATCTAGTTCCCGTC 59.932 63.158 0.00 0.00 0.00 4.79
7719 9911 0.974010 TTCCGCCATCTAGTTCCCGT 60.974 55.000 0.00 0.00 0.00 5.28
7720 9912 0.177141 TTTCCGCCATCTAGTTCCCG 59.823 55.000 0.00 0.00 0.00 5.14
7724 9916 4.451900 CCTGTAATTTCCGCCATCTAGTT 58.548 43.478 0.00 0.00 0.00 2.24
7767 10279 2.180432 ACCTAGTCAAAAGTTCGCCC 57.820 50.000 0.00 0.00 0.00 6.13
7871 10384 6.582437 AAGACGTTTTGGCAGTTTAAATTG 57.418 33.333 6.35 6.35 0.00 2.32
7874 10387 9.968870 AAATATAAGACGTTTTGGCAGTTTAAA 57.031 25.926 0.83 0.00 0.00 1.52
7877 10390 9.968870 TTTAAATATAAGACGTTTTGGCAGTTT 57.031 25.926 0.83 0.00 0.00 2.66
7907 10422 5.206587 TGACCCTTCTATTGTACTACCTCC 58.793 45.833 0.00 0.00 0.00 4.30
8054 10628 4.967084 TGCCTAAGACTGTTTAGTGGAA 57.033 40.909 0.00 0.00 37.25 3.53
8055 10629 6.808321 ATATGCCTAAGACTGTTTAGTGGA 57.192 37.500 0.00 3.84 37.25 4.02
8056 10630 7.275920 AGAATATGCCTAAGACTGTTTAGTGG 58.724 38.462 0.00 0.00 37.25 4.00
8057 10631 7.439655 GGAGAATATGCCTAAGACTGTTTAGTG 59.560 40.741 0.00 3.54 37.25 2.74
8058 10632 7.125811 TGGAGAATATGCCTAAGACTGTTTAGT 59.874 37.037 0.00 0.00 40.66 2.24
8059 10633 7.439655 GTGGAGAATATGCCTAAGACTGTTTAG 59.560 40.741 0.00 0.00 0.00 1.85
8061 10635 6.069963 AGTGGAGAATATGCCTAAGACTGTTT 60.070 38.462 0.00 0.00 0.00 2.83
8064 10638 5.543507 AGTGGAGAATATGCCTAAGACTG 57.456 43.478 0.00 0.00 0.00 3.51
8069 10643 8.177456 TCCTCTATTAGTGGAGAATATGCCTAA 58.823 37.037 9.87 0.00 35.12 2.69
8140 10714 3.119459 TGCTAAGAGTCTCGTTCATGGTC 60.119 47.826 0.00 0.00 0.00 4.02
8149 10723 8.412608 TGATTTTATCTTTGCTAAGAGTCTCG 57.587 34.615 15.63 0.00 43.33 4.04
8177 10751 2.759535 ACTACGAGGTCTTCCTAAAGCC 59.240 50.000 0.00 0.00 45.24 4.35
8178 10752 4.174762 CAACTACGAGGTCTTCCTAAAGC 58.825 47.826 0.00 0.00 45.24 3.51
8249 10929 8.356657 CAGTACTATGAAGGAGATAGTTCCAAG 58.643 40.741 0.00 0.00 39.84 3.61
8279 10961 6.820335 TCCACAACTATTATGACCAGATCTG 58.180 40.000 16.24 16.24 0.00 2.90
8451 11133 5.640732 ACGACAGTGCAATATTTGAATTCC 58.359 37.500 2.27 0.00 0.00 3.01
8535 11217 2.835764 TGCGGGTAAGAGAAACATACCT 59.164 45.455 0.00 0.00 41.11 3.08
8604 11328 4.970711 AGCTCATCAGTATGGGAAAGATG 58.029 43.478 0.00 0.00 35.37 2.90
8673 11400 3.679389 TCCTTCAGTTTCCATGAGCTTC 58.321 45.455 0.00 0.00 0.00 3.86
9032 11770 9.692749 TGTTTAGTCTTCTATATCTTATTGGCG 57.307 33.333 0.00 0.00 0.00 5.69
9051 11789 1.742308 TGAAGCCCCTCCTGTTTAGT 58.258 50.000 0.00 0.00 0.00 2.24
9065 11803 2.093235 AGAGTATGGTCAGCCTTGAAGC 60.093 50.000 0.00 0.00 34.49 3.86
9191 11929 6.483640 AGAATGACCTATAGGAAAACAATCGC 59.516 38.462 26.01 4.58 38.94 4.58
9231 12227 5.128205 TCTATGAATCATGAACCTGGCAAG 58.872 41.667 5.91 0.00 0.00 4.01
9232 12228 5.114764 TCTATGAATCATGAACCTGGCAA 57.885 39.130 5.91 0.00 0.00 4.52
9233 12229 4.776435 TCTATGAATCATGAACCTGGCA 57.224 40.909 5.91 0.00 0.00 4.92
9234 12230 5.564259 GCATTCTATGAATCATGAACCTGGC 60.564 44.000 5.91 6.69 0.00 4.85
9235 12231 5.048224 GGCATTCTATGAATCATGAACCTGG 60.048 44.000 5.91 0.00 0.00 4.45
9236 12232 5.048224 GGGCATTCTATGAATCATGAACCTG 60.048 44.000 5.91 5.62 0.00 4.00
9237 12233 5.075493 GGGCATTCTATGAATCATGAACCT 58.925 41.667 5.91 0.00 0.00 3.50
9238 12234 5.075493 AGGGCATTCTATGAATCATGAACC 58.925 41.667 5.91 6.34 0.00 3.62
9239 12235 6.712095 TGTAGGGCATTCTATGAATCATGAAC 59.288 38.462 5.91 0.00 0.00 3.18
9240 12236 6.840527 TGTAGGGCATTCTATGAATCATGAA 58.159 36.000 5.91 8.06 0.00 2.57
9241 12237 6.438186 TGTAGGGCATTCTATGAATCATGA 57.562 37.500 5.91 0.00 0.00 3.07
9242 12238 5.646793 CCTGTAGGGCATTCTATGAATCATG 59.353 44.000 5.91 0.00 0.00 3.07
9243 12239 5.549228 TCCTGTAGGGCATTCTATGAATCAT 59.451 40.000 0.00 0.00 35.41 2.45
9244 12240 4.907269 TCCTGTAGGGCATTCTATGAATCA 59.093 41.667 0.00 0.00 35.41 2.57
9245 12241 5.012561 AGTCCTGTAGGGCATTCTATGAATC 59.987 44.000 5.19 0.00 43.78 2.52
9246 12242 4.910304 AGTCCTGTAGGGCATTCTATGAAT 59.090 41.667 5.19 0.00 43.78 2.57
9247 12243 4.298626 AGTCCTGTAGGGCATTCTATGAA 58.701 43.478 5.19 0.00 43.78 2.57
9248 12244 3.898123 GAGTCCTGTAGGGCATTCTATGA 59.102 47.826 5.19 0.00 43.78 2.15
9249 12245 3.900601 AGAGTCCTGTAGGGCATTCTATG 59.099 47.826 5.19 0.00 43.78 2.23
9250 12246 4.206244 AGAGTCCTGTAGGGCATTCTAT 57.794 45.455 5.19 0.00 43.78 1.98
9251 12247 3.689872 AGAGTCCTGTAGGGCATTCTA 57.310 47.619 5.19 0.00 43.78 2.10
9252 12248 2.559381 AGAGTCCTGTAGGGCATTCT 57.441 50.000 5.19 0.00 43.78 2.40
9253 12249 2.365941 GGTAGAGTCCTGTAGGGCATTC 59.634 54.545 5.19 0.00 43.78 2.67
9254 12250 2.022918 AGGTAGAGTCCTGTAGGGCATT 60.023 50.000 5.19 0.00 43.78 3.56
9255 12251 1.576272 AGGTAGAGTCCTGTAGGGCAT 59.424 52.381 5.19 0.00 43.78 4.40
9256 12252 1.008403 AGGTAGAGTCCTGTAGGGCA 58.992 55.000 5.19 0.00 43.78 5.36
9257 12253 1.404843 CAGGTAGAGTCCTGTAGGGC 58.595 60.000 4.75 0.00 46.92 5.19
9264 12260 4.744795 CAGTTAATGCAGGTAGAGTCCT 57.255 45.455 0.00 0.00 38.51 3.85
9286 12282 5.186021 AGTTTCAGGATAGGTGTCACTACAG 59.814 44.000 2.35 0.00 35.91 2.74
9287 12283 5.084519 AGTTTCAGGATAGGTGTCACTACA 58.915 41.667 2.35 0.00 0.00 2.74
9288 12284 5.662674 AGTTTCAGGATAGGTGTCACTAC 57.337 43.478 2.35 0.00 0.00 2.73
9289 12285 6.728411 TCTAGTTTCAGGATAGGTGTCACTA 58.272 40.000 2.35 0.00 0.00 2.74
9290 12286 5.580998 TCTAGTTTCAGGATAGGTGTCACT 58.419 41.667 2.35 0.00 0.00 3.41
9291 12287 5.916661 TCTAGTTTCAGGATAGGTGTCAC 57.083 43.478 0.00 0.00 0.00 3.67
9292 12288 6.017192 AGTTCTAGTTTCAGGATAGGTGTCA 58.983 40.000 0.00 0.00 0.00 3.58
9293 12289 6.334202 CAGTTCTAGTTTCAGGATAGGTGTC 58.666 44.000 0.00 0.00 0.00 3.67
9294 12290 5.337652 GCAGTTCTAGTTTCAGGATAGGTGT 60.338 44.000 0.00 0.00 0.00 4.16
9295 12291 5.105146 AGCAGTTCTAGTTTCAGGATAGGTG 60.105 44.000 0.00 0.00 0.00 4.00
9296 12292 5.026790 AGCAGTTCTAGTTTCAGGATAGGT 58.973 41.667 0.00 0.00 0.00 3.08
9297 12293 5.606348 AGCAGTTCTAGTTTCAGGATAGG 57.394 43.478 0.00 0.00 0.00 2.57
9298 12294 8.254508 ACTAAAGCAGTTCTAGTTTCAGGATAG 58.745 37.037 0.00 0.00 31.59 2.08
9299 12295 8.035394 CACTAAAGCAGTTCTAGTTTCAGGATA 58.965 37.037 0.00 0.00 34.26 2.59
9300 12296 6.876257 CACTAAAGCAGTTCTAGTTTCAGGAT 59.124 38.462 0.00 0.00 34.26 3.24
9301 12297 6.183360 ACACTAAAGCAGTTCTAGTTTCAGGA 60.183 38.462 0.00 0.00 34.26 3.86
9302 12298 5.992217 ACACTAAAGCAGTTCTAGTTTCAGG 59.008 40.000 0.00 0.00 34.26 3.86
9303 12299 6.701841 TGACACTAAAGCAGTTCTAGTTTCAG 59.298 38.462 0.00 0.00 34.26 3.02
9304 12300 6.479001 GTGACACTAAAGCAGTTCTAGTTTCA 59.521 38.462 0.00 0.00 34.26 2.69
9305 12301 6.073711 GGTGACACTAAAGCAGTTCTAGTTTC 60.074 42.308 5.39 0.00 34.26 2.78
9306 12302 5.758784 GGTGACACTAAAGCAGTTCTAGTTT 59.241 40.000 5.39 0.00 34.26 2.66
9307 12303 5.298347 GGTGACACTAAAGCAGTTCTAGTT 58.702 41.667 5.39 0.00 34.26 2.24
9308 12304 4.262506 GGGTGACACTAAAGCAGTTCTAGT 60.263 45.833 5.39 0.00 34.26 2.57
9309 12305 4.021016 AGGGTGACACTAAAGCAGTTCTAG 60.021 45.833 5.39 0.00 34.26 2.43
9310 12306 3.901844 AGGGTGACACTAAAGCAGTTCTA 59.098 43.478 5.39 0.00 34.26 2.10
9311 12307 2.706190 AGGGTGACACTAAAGCAGTTCT 59.294 45.455 5.39 0.00 34.26 3.01
9312 12308 2.808543 CAGGGTGACACTAAAGCAGTTC 59.191 50.000 5.39 0.00 34.26 3.01
9313 12309 2.172717 ACAGGGTGACACTAAAGCAGTT 59.827 45.455 5.39 0.00 34.26 3.16
9314 12310 1.768870 ACAGGGTGACACTAAAGCAGT 59.231 47.619 5.39 0.00 38.32 4.40
9315 12311 2.550830 ACAGGGTGACACTAAAGCAG 57.449 50.000 5.39 0.00 0.00 4.24
9316 12312 3.838317 AGATACAGGGTGACACTAAAGCA 59.162 43.478 5.39 0.00 0.00 3.91
9317 12313 4.473477 AGATACAGGGTGACACTAAAGC 57.527 45.455 5.39 0.00 0.00 3.51
9318 12314 4.631813 GCAAGATACAGGGTGACACTAAAG 59.368 45.833 5.39 0.00 0.00 1.85
9319 12315 4.286032 AGCAAGATACAGGGTGACACTAAA 59.714 41.667 5.39 0.00 0.00 1.85
9320 12316 3.838317 AGCAAGATACAGGGTGACACTAA 59.162 43.478 5.39 0.00 0.00 2.24
9321 12317 3.441101 AGCAAGATACAGGGTGACACTA 58.559 45.455 5.39 0.00 0.00 2.74
9322 12318 2.260822 AGCAAGATACAGGGTGACACT 58.739 47.619 5.39 0.00 0.00 3.55
9323 12319 2.744202 CAAGCAAGATACAGGGTGACAC 59.256 50.000 0.00 0.00 0.00 3.67
9324 12320 2.875672 GCAAGCAAGATACAGGGTGACA 60.876 50.000 0.00 0.00 0.00 3.58
9325 12321 1.740025 GCAAGCAAGATACAGGGTGAC 59.260 52.381 0.00 0.00 0.00 3.67
9326 12322 1.350684 TGCAAGCAAGATACAGGGTGA 59.649 47.619 0.00 0.00 0.00 4.02
9327 12323 1.825090 TGCAAGCAAGATACAGGGTG 58.175 50.000 0.00 0.00 0.00 4.61
9328 12324 2.372264 CATGCAAGCAAGATACAGGGT 58.628 47.619 0.00 0.00 0.00 4.34
9329 12325 1.066605 GCATGCAAGCAAGATACAGGG 59.933 52.381 14.21 0.00 0.00 4.45
9330 12326 2.022195 AGCATGCAAGCAAGATACAGG 58.978 47.619 21.98 0.00 36.85 4.00
9331 12327 3.119602 ACAAGCATGCAAGCAAGATACAG 60.120 43.478 21.98 0.00 36.85 2.74
9332 12328 2.821378 ACAAGCATGCAAGCAAGATACA 59.179 40.909 21.98 0.00 36.85 2.29
9333 12329 3.498927 ACAAGCATGCAAGCAAGATAC 57.501 42.857 21.98 0.00 36.85 2.24
9334 12330 6.940831 TTATACAAGCATGCAAGCAAGATA 57.059 33.333 21.98 5.37 36.85 1.98
9335 12331 5.840243 TTATACAAGCATGCAAGCAAGAT 57.160 34.783 21.98 6.31 36.85 2.40
9336 12332 5.641783 TTTATACAAGCATGCAAGCAAGA 57.358 34.783 21.98 0.00 36.85 3.02
9337 12333 6.897259 AATTTATACAAGCATGCAAGCAAG 57.103 33.333 21.98 10.21 36.85 4.01
9338 12334 8.034215 ACTTAATTTATACAAGCATGCAAGCAA 58.966 29.630 21.98 0.00 36.85 3.91
9339 12335 7.488792 CACTTAATTTATACAAGCATGCAAGCA 59.511 33.333 21.98 2.27 36.85 3.91
9340 12336 7.515684 GCACTTAATTTATACAAGCATGCAAGC 60.516 37.037 21.98 5.62 0.00 4.01
9341 12337 7.488792 TGCACTTAATTTATACAAGCATGCAAG 59.511 33.333 21.98 14.12 31.97 4.01
9342 12338 7.318893 TGCACTTAATTTATACAAGCATGCAA 58.681 30.769 21.98 3.36 31.97 4.08
9343 12339 6.861144 TGCACTTAATTTATACAAGCATGCA 58.139 32.000 21.98 0.00 32.27 3.96
9344 12340 7.754069 TTGCACTTAATTTATACAAGCATGC 57.246 32.000 10.51 10.51 0.00 4.06
9345 12341 9.357652 ACTTTGCACTTAATTTATACAAGCATG 57.642 29.630 0.00 0.00 0.00 4.06
9346 12342 9.573133 GACTTTGCACTTAATTTATACAAGCAT 57.427 29.630 0.00 0.00 0.00 3.79
9347 12343 8.792633 AGACTTTGCACTTAATTTATACAAGCA 58.207 29.630 0.00 0.00 0.00 3.91
9355 12351 9.781633 TGGTTACTAGACTTTGCACTTAATTTA 57.218 29.630 0.00 0.00 0.00 1.40
9356 12352 8.685838 TGGTTACTAGACTTTGCACTTAATTT 57.314 30.769 0.00 0.00 0.00 1.82
9357 12353 8.730680 CATGGTTACTAGACTTTGCACTTAATT 58.269 33.333 0.00 0.00 0.00 1.40
9358 12354 7.336931 CCATGGTTACTAGACTTTGCACTTAAT 59.663 37.037 2.57 0.00 0.00 1.40
9359 12355 6.653320 CCATGGTTACTAGACTTTGCACTTAA 59.347 38.462 2.57 0.00 0.00 1.85
9360 12356 6.170506 CCATGGTTACTAGACTTTGCACTTA 58.829 40.000 2.57 0.00 0.00 2.24
9361 12357 5.003804 CCATGGTTACTAGACTTTGCACTT 58.996 41.667 2.57 0.00 0.00 3.16
9362 12358 4.041691 ACCATGGTTACTAGACTTTGCACT 59.958 41.667 13.00 0.00 0.00 4.40
9363 12359 4.154195 CACCATGGTTACTAGACTTTGCAC 59.846 45.833 16.84 0.00 0.00 4.57
9364 12360 4.323417 CACCATGGTTACTAGACTTTGCA 58.677 43.478 16.84 0.00 0.00 4.08
9365 12361 3.127030 GCACCATGGTTACTAGACTTTGC 59.873 47.826 16.84 7.26 0.00 3.68
9366 12362 4.579869 AGCACCATGGTTACTAGACTTTG 58.420 43.478 16.84 0.00 0.00 2.77
9367 12363 4.323562 GGAGCACCATGGTTACTAGACTTT 60.324 45.833 16.84 0.00 35.97 2.66
9368 12364 3.197983 GGAGCACCATGGTTACTAGACTT 59.802 47.826 16.84 0.00 35.97 3.01
9369 12365 2.766828 GGAGCACCATGGTTACTAGACT 59.233 50.000 16.84 5.31 35.97 3.24
9370 12366 2.500098 TGGAGCACCATGGTTACTAGAC 59.500 50.000 16.84 10.01 41.77 2.59
9371 12367 2.766263 CTGGAGCACCATGGTTACTAGA 59.234 50.000 16.84 4.95 45.87 2.43
9372 12368 2.766263 TCTGGAGCACCATGGTTACTAG 59.234 50.000 16.84 15.79 45.87 2.57
9373 12369 2.766263 CTCTGGAGCACCATGGTTACTA 59.234 50.000 16.84 6.63 45.87 1.82
9374 12370 1.556911 CTCTGGAGCACCATGGTTACT 59.443 52.381 16.84 16.10 45.87 2.24
9375 12371 2.029838 CTCTGGAGCACCATGGTTAC 57.970 55.000 16.84 10.87 45.87 2.50
9387 12383 0.392729 CCCTTCTTGCTGCTCTGGAG 60.393 60.000 0.00 0.00 0.00 3.86
9388 12384 1.681666 CCCTTCTTGCTGCTCTGGA 59.318 57.895 0.00 0.00 0.00 3.86
9389 12385 1.378250 CCCCTTCTTGCTGCTCTGG 60.378 63.158 0.00 0.00 0.00 3.86
9390 12386 0.676151 GTCCCCTTCTTGCTGCTCTG 60.676 60.000 0.00 0.00 0.00 3.35
9391 12387 0.839853 AGTCCCCTTCTTGCTGCTCT 60.840 55.000 0.00 0.00 0.00 4.09
9392 12388 0.905357 TAGTCCCCTTCTTGCTGCTC 59.095 55.000 0.00 0.00 0.00 4.26
9393 12389 1.362224 TTAGTCCCCTTCTTGCTGCT 58.638 50.000 0.00 0.00 0.00 4.24
9394 12390 2.424956 CAATTAGTCCCCTTCTTGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
9395 12391 3.955471 TCAATTAGTCCCCTTCTTGCTG 58.045 45.455 0.00 0.00 0.00 4.41
9396 12392 4.657814 TTCAATTAGTCCCCTTCTTGCT 57.342 40.909 0.00 0.00 0.00 3.91
9397 12393 4.082190 GGTTTCAATTAGTCCCCTTCTTGC 60.082 45.833 0.00 0.00 0.00 4.01
9398 12394 5.076873 TGGTTTCAATTAGTCCCCTTCTTG 58.923 41.667 0.00 0.00 0.00 3.02
9399 12395 5.333566 TGGTTTCAATTAGTCCCCTTCTT 57.666 39.130 0.00 0.00 0.00 2.52
9400 12396 5.222337 ACATGGTTTCAATTAGTCCCCTTCT 60.222 40.000 0.00 0.00 0.00 2.85
9401 12397 5.016831 ACATGGTTTCAATTAGTCCCCTTC 58.983 41.667 0.00 0.00 0.00 3.46
9402 12398 5.010708 ACATGGTTTCAATTAGTCCCCTT 57.989 39.130 0.00 0.00 0.00 3.95
9403 12399 4.675063 ACATGGTTTCAATTAGTCCCCT 57.325 40.909 0.00 0.00 0.00 4.79
9404 12400 5.738619 AAACATGGTTTCAATTAGTCCCC 57.261 39.130 0.00 0.00 0.00 4.81
9405 12401 7.462571 ACTAAACATGGTTTCAATTAGTCCC 57.537 36.000 0.00 0.00 31.36 4.46
9406 12402 9.758651 AAAACTAAACATGGTTTCAATTAGTCC 57.241 29.630 0.00 0.00 35.02 3.85
9416 12412 9.892130 TGGAAATTACAAAACTAAACATGGTTT 57.108 25.926 0.00 0.00 37.26 3.27
9417 12413 9.892130 TTGGAAATTACAAAACTAAACATGGTT 57.108 25.926 0.00 0.00 0.00 3.67
9427 12423 8.924511 TCTCTCAGATTGGAAATTACAAAACT 57.075 30.769 0.00 0.00 0.00 2.66
9428 12424 7.752686 GCTCTCTCAGATTGGAAATTACAAAAC 59.247 37.037 0.00 0.00 0.00 2.43
9429 12425 7.361201 CGCTCTCTCAGATTGGAAATTACAAAA 60.361 37.037 0.00 0.00 0.00 2.44
9430 12426 6.092670 CGCTCTCTCAGATTGGAAATTACAAA 59.907 38.462 0.00 0.00 0.00 2.83
9431 12427 5.582269 CGCTCTCTCAGATTGGAAATTACAA 59.418 40.000 0.00 0.00 0.00 2.41
9432 12428 5.111989 CGCTCTCTCAGATTGGAAATTACA 58.888 41.667 0.00 0.00 0.00 2.41
9433 12429 4.509600 CCGCTCTCTCAGATTGGAAATTAC 59.490 45.833 0.00 0.00 0.00 1.89
9434 12430 4.697514 CCGCTCTCTCAGATTGGAAATTA 58.302 43.478 0.00 0.00 0.00 1.40
9435 12431 3.539604 CCGCTCTCTCAGATTGGAAATT 58.460 45.455 0.00 0.00 0.00 1.82
9436 12432 2.744494 GCCGCTCTCTCAGATTGGAAAT 60.744 50.000 0.00 0.00 0.00 2.17
9437 12433 1.406069 GCCGCTCTCTCAGATTGGAAA 60.406 52.381 0.00 0.00 0.00 3.13
9438 12434 0.176680 GCCGCTCTCTCAGATTGGAA 59.823 55.000 0.00 0.00 0.00 3.53
9439 12435 0.972471 TGCCGCTCTCTCAGATTGGA 60.972 55.000 0.00 0.00 0.00 3.53
9440 12436 0.809241 GTGCCGCTCTCTCAGATTGG 60.809 60.000 0.00 0.00 0.00 3.16
9441 12437 0.108472 TGTGCCGCTCTCTCAGATTG 60.108 55.000 0.00 0.00 0.00 2.67
9442 12438 0.175302 CTGTGCCGCTCTCTCAGATT 59.825 55.000 0.00 0.00 0.00 2.40
9443 12439 0.969917 ACTGTGCCGCTCTCTCAGAT 60.970 55.000 0.00 0.00 0.00 2.90
9444 12440 1.604879 ACTGTGCCGCTCTCTCAGA 60.605 57.895 0.00 0.00 0.00 3.27
9445 12441 1.445754 CACTGTGCCGCTCTCTCAG 60.446 63.158 0.00 0.00 0.00 3.35
9446 12442 1.903404 TCACTGTGCCGCTCTCTCA 60.903 57.895 2.12 0.00 0.00 3.27
9447 12443 1.445238 GTCACTGTGCCGCTCTCTC 60.445 63.158 2.12 0.00 0.00 3.20
9448 12444 2.653702 GTCACTGTGCCGCTCTCT 59.346 61.111 2.12 0.00 0.00 3.10
9449 12445 2.433318 GGTCACTGTGCCGCTCTC 60.433 66.667 2.12 0.00 0.00 3.20
9450 12446 2.044806 AAAGGTCACTGTGCCGCTCT 62.045 55.000 2.12 0.00 0.00 4.09
9451 12447 1.166531 AAAAGGTCACTGTGCCGCTC 61.167 55.000 2.12 0.00 0.00 5.03
9452 12448 1.152963 AAAAGGTCACTGTGCCGCT 60.153 52.632 2.12 0.00 0.00 5.52
9453 12449 1.282875 GAAAAGGTCACTGTGCCGC 59.717 57.895 2.12 0.00 0.00 6.53
9454 12450 1.238439 ATGAAAAGGTCACTGTGCCG 58.762 50.000 2.12 0.00 39.72 5.69
9455 12451 5.391312 AAATATGAAAAGGTCACTGTGCC 57.609 39.130 2.12 7.96 39.72 5.01
9456 12452 6.528072 GCTTAAATATGAAAAGGTCACTGTGC 59.472 38.462 2.12 0.00 39.72 4.57
9457 12453 7.820648 AGCTTAAATATGAAAAGGTCACTGTG 58.179 34.615 0.17 0.17 39.72 3.66
9458 12454 8.947115 GTAGCTTAAATATGAAAAGGTCACTGT 58.053 33.333 0.00 0.00 39.72 3.55
9459 12455 8.946085 TGTAGCTTAAATATGAAAAGGTCACTG 58.054 33.333 0.00 0.00 39.72 3.66
9460 12456 9.167311 CTGTAGCTTAAATATGAAAAGGTCACT 57.833 33.333 0.00 0.00 39.72 3.41
9461 12457 8.398665 CCTGTAGCTTAAATATGAAAAGGTCAC 58.601 37.037 0.00 0.00 39.72 3.67
9462 12458 8.107095 ACCTGTAGCTTAAATATGAAAAGGTCA 58.893 33.333 0.00 0.00 41.67 4.02
9463 12459 8.507524 ACCTGTAGCTTAAATATGAAAAGGTC 57.492 34.615 0.00 0.00 33.37 3.85
9464 12460 8.107095 TGACCTGTAGCTTAAATATGAAAAGGT 58.893 33.333 0.00 0.00 35.90 3.50
9465 12461 8.506168 TGACCTGTAGCTTAAATATGAAAAGG 57.494 34.615 0.00 0.00 0.00 3.11
9466 12462 9.774742 GTTGACCTGTAGCTTAAATATGAAAAG 57.225 33.333 0.00 0.00 0.00 2.27
9647 12686 7.649973 TCTAAGCGAAGTATATTCTCAGTTCC 58.350 38.462 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.