Multiple sequence alignment - TraesCS7B01G015700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G015700 chr7B 100.000 3166 0 0 1 3166 12965335 12968500 0.000000e+00 5847.0
1 TraesCS7B01G015700 chr7B 86.221 479 53 10 2698 3166 16149529 16149054 1.010000e-139 507.0
2 TraesCS7B01G015700 chr7D 92.009 2140 114 28 164 2263 70819434 70821556 0.000000e+00 2952.0
3 TraesCS7B01G015700 chr7D 87.185 476 50 5 2700 3164 164759067 164758592 6.010000e-147 531.0
4 TraesCS7B01G015700 chr7D 87.238 478 44 11 2700 3166 626485590 626486061 2.160000e-146 529.0
5 TraesCS7B01G015700 chr7D 86.402 478 53 7 2700 3166 616425052 616425528 2.180000e-141 512.0
6 TraesCS7B01G015700 chr7D 81.481 216 19 4 2324 2538 70824933 70825128 1.180000e-34 158.0
7 TraesCS7B01G015700 chr7D 95.062 81 4 0 2618 2698 70825173 70825253 9.220000e-26 128.0
8 TraesCS7B01G015700 chr7D 93.421 76 5 0 4 79 70819321 70819396 2.580000e-21 113.0
9 TraesCS7B01G015700 chr7A 96.106 719 23 4 1556 2271 76935999 76936715 0.000000e+00 1168.0
10 TraesCS7B01G015700 chr7A 84.476 773 78 25 721 1464 76935085 76935844 0.000000e+00 725.0
11 TraesCS7B01G015700 chr7A 89.173 508 36 12 7 496 76932628 76933134 1.610000e-172 616.0
12 TraesCS7B01G015700 chr7A 86.128 483 48 14 2697 3166 79229733 79230209 1.310000e-138 503.0
13 TraesCS7B01G015700 chr7A 80.087 462 46 16 2248 2698 76936843 76937269 5.130000e-78 302.0
14 TraesCS7B01G015700 chr1D 87.789 475 45 8 2700 3163 489533032 489533504 7.720000e-151 544.0
15 TraesCS7B01G015700 chr2B 87.164 483 45 14 2699 3166 776557037 776556557 1.670000e-147 532.0
16 TraesCS7B01G015700 chr5D 86.792 477 47 12 2702 3164 381560031 381560505 4.680000e-143 518.0
17 TraesCS7B01G015700 chr5D 91.860 86 7 0 540 625 104601105 104601190 1.540000e-23 121.0
18 TraesCS7B01G015700 chr2D 86.920 474 46 12 2701 3163 55924341 55923873 4.680000e-143 518.0
19 TraesCS7B01G015700 chr3A 91.429 140 12 0 1572 1711 25388738 25388599 3.220000e-45 193.0
20 TraesCS7B01G015700 chr3A 88.112 143 17 0 2004 2146 25388155 25388013 1.510000e-38 171.0
21 TraesCS7B01G015700 chr3A 88.372 86 10 0 540 625 384193591 384193676 1.550000e-18 104.0
22 TraesCS7B01G015700 chr3A 87.952 83 10 0 540 622 457894608 457894690 7.230000e-17 99.0
23 TraesCS7B01G015700 chr3A 85.897 78 3 7 2299 2376 561133828 561133897 3.390000e-10 76.8
24 TraesCS7B01G015700 chr3B 90.226 133 13 0 1579 1711 16325013 16325145 1.170000e-39 174.0
25 TraesCS7B01G015700 chr3B 87.838 148 18 0 2004 2151 16326925 16327072 1.170000e-39 174.0
26 TraesCS7B01G015700 chr3B 90.226 133 13 0 1579 1711 20383335 20383203 1.170000e-39 174.0
27 TraesCS7B01G015700 chr3B 87.162 148 19 0 2004 2151 20382762 20382615 5.430000e-38 169.0
28 TraesCS7B01G015700 chr3B 80.905 199 38 0 2004 2202 16334568 16334766 1.180000e-34 158.0
29 TraesCS7B01G015700 chr3D 90.909 121 11 0 2004 2124 11593526 11593646 2.530000e-36 163.0
30 TraesCS7B01G015700 chr3D 90.083 121 12 0 1591 1711 11601174 11601294 1.180000e-34 158.0
31 TraesCS7B01G015700 chr3D 90.217 92 8 1 1621 1711 11592988 11593079 5.550000e-23 119.0
32 TraesCS7B01G015700 chr3D 84.158 101 16 0 530 630 606595930 606595830 7.230000e-17 99.0
33 TraesCS7B01G015700 chr6A 83.962 106 15 2 540 644 91701692 91701796 2.010000e-17 100.0
34 TraesCS7B01G015700 chr4A 87.356 87 9 2 540 625 531688275 531688190 7.230000e-17 99.0
35 TraesCS7B01G015700 chr4A 87.654 81 10 0 540 620 556184912 556184832 9.350000e-16 95.3
36 TraesCS7B01G015700 chr1A 90.411 73 7 0 553 625 458516061 458515989 2.600000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G015700 chr7B 12965335 12968500 3165 False 5847.00 5847 100.00000 1 3166 1 chr7B.!!$F1 3165
1 TraesCS7B01G015700 chr7D 70819321 70825253 5932 False 837.75 2952 90.49325 4 2698 4 chr7D.!!$F3 2694
2 TraesCS7B01G015700 chr7A 76932628 76937269 4641 False 702.75 1168 87.46050 7 2698 4 chr7A.!!$F2 2691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 2681 0.24928 TAGACGGGCACATGCATACG 60.249 55.0 0.0 9.39 44.36 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2849 8091 0.093026 GTTCGAGATTTGGACGCACG 59.907 55.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.814812 GTCGGGAGGAGTCTAGACGG 60.815 65.000 17.07 2.76 36.20 4.79
55 56 1.143277 GAGGAGTCTAGACGGGATGGA 59.857 57.143 17.07 0.00 36.20 3.41
82 83 7.329226 GGTGTTGAAATATGATGTTTGTCCTTG 59.671 37.037 0.00 0.00 0.00 3.61
86 87 8.862325 TGAAATATGATGTTTGTCCTTGTAGT 57.138 30.769 0.00 0.00 0.00 2.73
88 89 7.865706 AATATGATGTTTGTCCTTGTAGTCC 57.134 36.000 0.00 0.00 0.00 3.85
91 92 4.102524 TGATGTTTGTCCTTGTAGTCCTGT 59.897 41.667 0.00 0.00 0.00 4.00
97 98 3.964688 TGTCCTTGTAGTCCTGTTCAGAA 59.035 43.478 1.00 0.00 0.00 3.02
139 146 7.047460 AGAGCATGAATTCAATAATGTTCCC 57.953 36.000 13.09 0.00 32.53 3.97
151 158 2.951229 ATGTTCCCACCGAGTTCTTT 57.049 45.000 0.00 0.00 0.00 2.52
160 167 3.558505 CACCGAGTTCTTTGCAATTCAG 58.441 45.455 0.00 0.00 0.00 3.02
288 301 1.402787 CACCATCATTACTTGGCCCC 58.597 55.000 0.00 0.00 36.41 5.80
456 476 1.136891 GCAGCTTTTGTGGGTCTGTTT 59.863 47.619 0.00 0.00 0.00 2.83
507 530 2.948979 CGTCTCTCTCATGAAGCTACCT 59.051 50.000 0.00 0.00 0.00 3.08
527 550 4.162698 ACCTGCGTGGGATACAATAACTAA 59.837 41.667 2.97 0.00 41.11 2.24
661 2148 8.633561 GCATACTATCATGTATCAGGCACTATA 58.366 37.037 0.00 0.00 31.17 1.31
686 2173 7.704578 AATGTGCGTAGTATCATATACTCCT 57.295 36.000 2.93 0.00 0.00 3.69
692 2179 6.960431 GCGTAGTATCATATACTCCTTTCGTC 59.040 42.308 2.93 0.00 0.00 4.20
693 2180 7.462731 CGTAGTATCATATACTCCTTTCGTCC 58.537 42.308 2.93 0.00 0.00 4.79
707 2194 6.320518 TCCTTTCGTCCCATAATATAGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
782 2532 3.576356 CAGGGCTATGCGTTGGCG 61.576 66.667 7.76 0.00 44.10 5.69
931 2681 0.249280 TAGACGGGCACATGCATACG 60.249 55.000 0.00 9.39 44.36 3.06
944 2694 2.762535 GCATACGGCATACCATACCT 57.237 50.000 0.00 0.00 43.97 3.08
952 2702 1.734655 CATACCATACCTCCAGGCCT 58.265 55.000 0.00 0.00 39.32 5.19
953 2703 1.625818 CATACCATACCTCCAGGCCTC 59.374 57.143 0.00 0.00 39.32 4.70
954 2704 0.639943 TACCATACCTCCAGGCCTCA 59.360 55.000 0.00 0.00 39.32 3.86
974 2724 3.376859 TCATCAGAAGAGAGAGCGAAGAC 59.623 47.826 0.00 0.00 0.00 3.01
1061 2817 2.115266 ACCACCTTCTTTGGCCCG 59.885 61.111 0.00 0.00 37.69 6.13
1111 2867 2.760385 CTCTCCCCGGACACCTCC 60.760 72.222 0.73 0.00 0.00 4.30
1113 2869 2.760385 CTCCCCGGACACCTCCTC 60.760 72.222 0.73 0.00 33.79 3.71
1118 2874 2.583441 CCGGACACCTCCTCTTGCA 61.583 63.158 0.00 0.00 33.79 4.08
1119 2875 1.371183 CGGACACCTCCTCTTGCAA 59.629 57.895 0.00 0.00 33.79 4.08
1123 2879 2.501723 GGACACCTCCTCTTGCAATCTA 59.498 50.000 0.00 0.00 33.07 1.98
1129 2885 3.401182 CTCCTCTTGCAATCTAGCCATC 58.599 50.000 0.00 0.00 0.00 3.51
1182 2941 2.357836 CCTGCCACTTGCTCCCAT 59.642 61.111 0.00 0.00 42.00 4.00
1309 3079 1.822581 GGTTTGTTGTGCAACTCGAC 58.177 50.000 14.97 10.51 41.67 4.20
1328 3101 3.305199 CGACTAGGACGGACAAGTTCTTT 60.305 47.826 0.00 0.00 31.30 2.52
1358 3131 1.080093 GACCGTCCATGACAGCGAA 60.080 57.895 0.00 0.00 32.09 4.70
1493 3380 4.706035 ACATGTACGGTGTTGGTTCTTAA 58.294 39.130 0.00 0.00 0.00 1.85
1500 3388 5.584442 ACGGTGTTGGTTCTTAATTTGTTC 58.416 37.500 0.00 0.00 0.00 3.18
1502 3390 5.912955 CGGTGTTGGTTCTTAATTTGTTCTC 59.087 40.000 0.00 0.00 0.00 2.87
1506 3394 6.540914 TGTTGGTTCTTAATTTGTTCTCGACT 59.459 34.615 0.00 0.00 0.00 4.18
1532 3420 2.133281 TAAACCCTCGATCGTCTCCA 57.867 50.000 15.94 0.00 0.00 3.86
1559 3447 5.472820 TCAATTATTGATGCACACAGACACA 59.527 36.000 3.20 0.00 34.08 3.72
1568 3456 5.146010 TGCACACAGACACAACTATATCA 57.854 39.130 0.00 0.00 0.00 2.15
1645 3534 1.839354 TCAGCATGACCTCCATAGCAA 59.161 47.619 0.00 0.00 42.56 3.91
1726 3619 8.649973 ACTAGTATGTCAATCCGAAATCTTTC 57.350 34.615 0.00 0.00 0.00 2.62
1729 3622 7.331026 AGTATGTCAATCCGAAATCTTTCAGA 58.669 34.615 3.77 0.00 37.01 3.27
1745 3638 1.556911 TCAGACTGGGAATCTCAAGGC 59.443 52.381 1.81 0.00 0.00 4.35
1928 3831 1.957186 TGAGGTACGCGCACAAACC 60.957 57.895 12.27 8.83 0.00 3.27
1994 3903 3.006217 CCGTTGATCTCCTCTGATGCATA 59.994 47.826 0.00 0.00 0.00 3.14
1995 3904 4.322574 CCGTTGATCTCCTCTGATGCATAT 60.323 45.833 0.00 0.00 0.00 1.78
2098 4007 0.368227 GAGATGTCGTTCAAGCTGCG 59.632 55.000 0.00 0.00 0.00 5.18
2225 4134 8.110860 TCATCCTTGAACCTGTTAAGAATTTC 57.889 34.615 0.00 0.00 0.00 2.17
2395 7627 3.625764 GCGCAAGGTTGGATGTCTAAATA 59.374 43.478 0.30 0.00 38.28 1.40
2447 7679 5.545063 TTCTGAATGTACTGTTCACTGGA 57.455 39.130 9.31 4.81 32.55 3.86
2449 7681 5.482006 TCTGAATGTACTGTTCACTGGATG 58.518 41.667 9.31 1.96 32.55 3.51
2450 7682 5.012046 TCTGAATGTACTGTTCACTGGATGT 59.988 40.000 9.31 0.00 32.55 3.06
2451 7683 6.210584 TCTGAATGTACTGTTCACTGGATGTA 59.789 38.462 9.31 0.00 32.55 2.29
2452 7684 6.398095 TGAATGTACTGTTCACTGGATGTAG 58.602 40.000 9.31 0.00 31.07 2.74
2453 7685 6.210584 TGAATGTACTGTTCACTGGATGTAGA 59.789 38.462 9.31 0.00 31.07 2.59
2454 7686 6.605471 ATGTACTGTTCACTGGATGTAGAA 57.395 37.500 0.00 0.00 0.00 2.10
2455 7687 6.025749 TGTACTGTTCACTGGATGTAGAAG 57.974 41.667 0.00 0.00 0.00 2.85
2456 7688 5.773176 TGTACTGTTCACTGGATGTAGAAGA 59.227 40.000 0.00 0.00 0.00 2.87
2457 7689 5.398603 ACTGTTCACTGGATGTAGAAGAG 57.601 43.478 0.00 0.00 35.44 2.85
2458 7690 4.180057 CTGTTCACTGGATGTAGAAGAGC 58.820 47.826 0.00 0.00 0.00 4.09
2459 7691 3.055819 TGTTCACTGGATGTAGAAGAGCC 60.056 47.826 0.00 0.00 0.00 4.70
2460 7692 3.107402 TCACTGGATGTAGAAGAGCCT 57.893 47.619 0.00 0.00 0.00 4.58
2461 7693 2.762887 TCACTGGATGTAGAAGAGCCTG 59.237 50.000 0.00 0.00 0.00 4.85
2462 7694 2.114616 ACTGGATGTAGAAGAGCCTGG 58.885 52.381 0.00 0.00 0.00 4.45
2463 7695 1.415659 CTGGATGTAGAAGAGCCTGGG 59.584 57.143 0.00 0.00 0.00 4.45
2464 7696 0.107643 GGATGTAGAAGAGCCTGGGC 59.892 60.000 3.00 3.00 42.33 5.36
2465 7697 0.833287 GATGTAGAAGAGCCTGGGCA 59.167 55.000 14.39 0.00 44.88 5.36
2466 7698 0.543749 ATGTAGAAGAGCCTGGGCAC 59.456 55.000 14.39 7.67 44.88 5.01
2480 7712 2.959507 GGGCACCGCTTTGAATTATT 57.040 45.000 0.00 0.00 40.86 1.40
2510 7742 3.961480 TCAGCTAAGCTTCAGTGCTAA 57.039 42.857 0.00 0.00 43.24 3.09
2543 7784 5.621228 GCTTGTGTTTGAGAGTAAAATGTCG 59.379 40.000 0.00 0.00 0.00 4.35
2552 7793 1.448189 TAAAATGTCGGGTCGGGCG 60.448 57.895 0.00 0.00 0.00 6.13
2562 7803 2.822701 GTCGGGCGGGGTTTCATC 60.823 66.667 0.00 0.00 0.00 2.92
2565 7806 2.513897 GGGCGGGGTTTCATCTCG 60.514 66.667 0.00 0.00 0.00 4.04
2567 7808 1.146263 GGCGGGGTTTCATCTCGAT 59.854 57.895 0.00 0.00 0.00 3.59
2571 7812 2.205074 CGGGGTTTCATCTCGATCTTG 58.795 52.381 0.00 0.00 0.00 3.02
2581 7822 3.973206 TCTCGATCTTGTAAAAGCCCA 57.027 42.857 0.00 0.00 0.00 5.36
2584 7825 4.003648 CTCGATCTTGTAAAAGCCCAACT 58.996 43.478 0.00 0.00 0.00 3.16
2599 7840 6.603940 AGCCCAACTTTTAAAATATCAGCA 57.396 33.333 0.09 0.00 0.00 4.41
2609 7850 6.588719 TTAAAATATCAGCACAAGCCTTGT 57.411 33.333 3.74 3.74 46.75 3.16
2610 7851 5.473066 AAAATATCAGCACAAGCCTTGTT 57.527 34.783 7.51 0.00 43.23 2.83
2611 7852 4.445452 AATATCAGCACAAGCCTTGTTG 57.555 40.909 7.51 5.11 43.23 3.33
2612 7853 0.963962 ATCAGCACAAGCCTTGTTGG 59.036 50.000 7.51 0.00 43.23 3.77
2613 7854 0.106769 TCAGCACAAGCCTTGTTGGA 60.107 50.000 7.51 3.02 43.23 3.53
2614 7855 0.746063 CAGCACAAGCCTTGTTGGAA 59.254 50.000 7.51 0.00 43.23 3.53
2615 7856 1.035139 AGCACAAGCCTTGTTGGAAG 58.965 50.000 7.51 0.00 43.23 3.46
2616 7857 0.032540 GCACAAGCCTTGTTGGAAGG 59.967 55.000 7.51 0.00 43.23 3.46
2646 7887 7.414266 AGCCCAAACTATCCTCTTTTCTAAAT 58.586 34.615 0.00 0.00 0.00 1.40
2676 7918 1.341852 GGCCCAAAGTTAAGCCGAAAA 59.658 47.619 0.00 0.00 35.30 2.29
2692 7934 2.416836 CGAAAACCCGATCTGAGCTACA 60.417 50.000 0.00 0.00 0.00 2.74
2698 7940 4.589908 ACCCGATCTGAGCTACAATTTTT 58.410 39.130 0.00 0.00 0.00 1.94
2699 7941 4.636206 ACCCGATCTGAGCTACAATTTTTC 59.364 41.667 0.00 0.00 0.00 2.29
2700 7942 4.260375 CCCGATCTGAGCTACAATTTTTCG 60.260 45.833 0.00 0.00 0.00 3.46
2701 7943 4.566759 CCGATCTGAGCTACAATTTTTCGA 59.433 41.667 0.00 0.00 0.00 3.71
2702 7944 5.063438 CCGATCTGAGCTACAATTTTTCGAA 59.937 40.000 0.00 0.00 0.00 3.71
2703 7945 6.402118 CCGATCTGAGCTACAATTTTTCGAAA 60.402 38.462 6.47 6.47 0.00 3.46
2704 7946 7.182761 CGATCTGAGCTACAATTTTTCGAAAT 58.817 34.615 12.12 0.00 0.00 2.17
2705 7947 7.371875 CGATCTGAGCTACAATTTTTCGAAATC 59.628 37.037 12.12 3.51 0.00 2.17
2706 7948 7.433708 TCTGAGCTACAATTTTTCGAAATCA 57.566 32.000 12.12 8.01 0.00 2.57
2707 7949 7.298122 TCTGAGCTACAATTTTTCGAAATCAC 58.702 34.615 12.12 0.00 0.00 3.06
2708 7950 7.173218 TCTGAGCTACAATTTTTCGAAATCACT 59.827 33.333 12.12 1.39 0.00 3.41
2709 7951 8.317891 TGAGCTACAATTTTTCGAAATCACTA 57.682 30.769 12.12 0.00 0.00 2.74
2710 7952 8.443160 TGAGCTACAATTTTTCGAAATCACTAG 58.557 33.333 12.12 8.23 0.00 2.57
2711 7953 8.324163 AGCTACAATTTTTCGAAATCACTAGT 57.676 30.769 12.12 8.58 0.00 2.57
2712 7954 8.784043 AGCTACAATTTTTCGAAATCACTAGTT 58.216 29.630 12.12 3.18 0.00 2.24
2713 7955 8.840867 GCTACAATTTTTCGAAATCACTAGTTG 58.159 33.333 12.12 11.50 0.00 3.16
2716 7958 9.398170 ACAATTTTTCGAAATCACTAGTTGATG 57.602 29.630 12.12 1.67 44.86 3.07
2717 7959 9.611284 CAATTTTTCGAAATCACTAGTTGATGA 57.389 29.630 12.12 0.00 44.86 2.92
2718 7960 9.831737 AATTTTTCGAAATCACTAGTTGATGAG 57.168 29.630 12.12 0.00 44.86 2.90
2719 7961 7.962964 TTTTCGAAATCACTAGTTGATGAGT 57.037 32.000 12.12 0.00 44.86 3.41
2720 7962 9.483916 TTTTTCGAAATCACTAGTTGATGAGTA 57.516 29.630 12.12 0.00 44.86 2.59
2721 7963 9.653287 TTTTCGAAATCACTAGTTGATGAGTAT 57.347 29.630 12.12 0.00 44.86 2.12
2722 7964 9.653287 TTTCGAAATCACTAGTTGATGAGTATT 57.347 29.630 6.47 0.00 44.86 1.89
2723 7965 9.653287 TTCGAAATCACTAGTTGATGAGTATTT 57.347 29.630 0.00 0.00 44.86 1.40
2724 7966 9.087424 TCGAAATCACTAGTTGATGAGTATTTG 57.913 33.333 0.00 0.00 44.86 2.32
2725 7967 8.873830 CGAAATCACTAGTTGATGAGTATTTGT 58.126 33.333 0.00 0.00 44.86 2.83
2728 7970 7.364522 TCACTAGTTGATGAGTATTTGTTGC 57.635 36.000 0.00 0.00 0.00 4.17
2729 7971 6.934083 TCACTAGTTGATGAGTATTTGTTGCA 59.066 34.615 0.00 0.00 0.00 4.08
2730 7972 7.443879 TCACTAGTTGATGAGTATTTGTTGCAA 59.556 33.333 0.00 0.00 0.00 4.08
2731 7973 8.075574 CACTAGTTGATGAGTATTTGTTGCAAA 58.924 33.333 0.00 0.00 0.00 3.68
2732 7974 8.292448 ACTAGTTGATGAGTATTTGTTGCAAAG 58.708 33.333 0.00 0.00 0.00 2.77
2733 7975 7.275888 AGTTGATGAGTATTTGTTGCAAAGA 57.724 32.000 0.00 0.00 0.00 2.52
2734 7976 7.889469 AGTTGATGAGTATTTGTTGCAAAGAT 58.111 30.769 0.00 0.00 0.00 2.40
2735 7977 8.025445 AGTTGATGAGTATTTGTTGCAAAGATC 58.975 33.333 0.00 0.00 0.00 2.75
2736 7978 7.451501 TGATGAGTATTTGTTGCAAAGATCA 57.548 32.000 0.00 0.00 0.00 2.92
2737 7979 7.307694 TGATGAGTATTTGTTGCAAAGATCAC 58.692 34.615 0.00 0.00 0.00 3.06
2738 7980 6.882610 TGAGTATTTGTTGCAAAGATCACT 57.117 33.333 0.00 2.09 0.00 3.41
2739 7981 6.902341 TGAGTATTTGTTGCAAAGATCACTC 58.098 36.000 18.04 18.04 0.00 3.51
2740 7982 6.072508 TGAGTATTTGTTGCAAAGATCACTCC 60.073 38.462 20.32 9.69 0.00 3.85
2741 7983 5.769662 AGTATTTGTTGCAAAGATCACTCCA 59.230 36.000 0.00 0.00 0.00 3.86
2742 7984 4.998671 TTTGTTGCAAAGATCACTCCAA 57.001 36.364 0.00 0.00 0.00 3.53
2743 7985 3.988379 TGTTGCAAAGATCACTCCAAC 57.012 42.857 0.00 4.14 34.68 3.77
2744 7986 2.622942 TGTTGCAAAGATCACTCCAACC 59.377 45.455 0.00 0.00 33.53 3.77
2745 7987 2.887152 GTTGCAAAGATCACTCCAACCT 59.113 45.455 0.00 0.00 0.00 3.50
2746 7988 2.783135 TGCAAAGATCACTCCAACCTC 58.217 47.619 0.00 0.00 0.00 3.85
2747 7989 2.087646 GCAAAGATCACTCCAACCTCC 58.912 52.381 0.00 0.00 0.00 4.30
2748 7990 2.290577 GCAAAGATCACTCCAACCTCCT 60.291 50.000 0.00 0.00 0.00 3.69
2749 7991 3.055094 GCAAAGATCACTCCAACCTCCTA 60.055 47.826 0.00 0.00 0.00 2.94
2750 7992 4.764172 CAAAGATCACTCCAACCTCCTAG 58.236 47.826 0.00 0.00 0.00 3.02
2751 7993 3.039252 AGATCACTCCAACCTCCTAGG 57.961 52.381 0.82 0.82 42.49 3.02
2763 8005 3.045601 CCTCCTAGGTTGTGACAAGTG 57.954 52.381 9.08 0.00 0.00 3.16
2764 8006 2.289694 CCTCCTAGGTTGTGACAAGTGG 60.290 54.545 9.08 0.00 0.00 4.00
2765 8007 1.071699 TCCTAGGTTGTGACAAGTGGC 59.928 52.381 9.08 0.00 0.00 5.01
2766 8008 1.148310 CTAGGTTGTGACAAGTGGCG 58.852 55.000 0.00 0.00 0.00 5.69
2767 8009 0.882927 TAGGTTGTGACAAGTGGCGC 60.883 55.000 0.00 0.00 0.00 6.53
2768 8010 2.052237 GTTGTGACAAGTGGCGCG 60.052 61.111 0.00 0.00 36.03 6.86
2769 8011 3.947841 TTGTGACAAGTGGCGCGC 61.948 61.111 25.94 25.94 36.03 6.86
2770 8012 4.908687 TGTGACAAGTGGCGCGCT 62.909 61.111 32.29 10.06 36.03 5.92
2771 8013 4.077188 GTGACAAGTGGCGCGCTC 62.077 66.667 32.29 23.17 0.00 5.03
2774 8016 4.742201 ACAAGTGGCGCGCTCGAT 62.742 61.111 32.29 12.65 38.10 3.59
2775 8017 4.214383 CAAGTGGCGCGCTCGATG 62.214 66.667 32.29 20.40 38.10 3.84
2776 8018 4.742201 AAGTGGCGCGCTCGATGT 62.742 61.111 32.29 8.91 38.10 3.06
2785 8027 3.121030 GCTCGATGTGCGCCACTT 61.121 61.111 4.18 1.20 40.61 3.16
2786 8028 2.780643 CTCGATGTGCGCCACTTG 59.219 61.111 4.18 0.00 40.61 3.16
2787 8029 2.029288 CTCGATGTGCGCCACTTGT 61.029 57.895 4.18 0.00 40.61 3.16
2788 8030 1.959899 CTCGATGTGCGCCACTTGTC 61.960 60.000 4.18 3.29 40.61 3.18
2789 8031 2.476051 GATGTGCGCCACTTGTCG 59.524 61.111 4.18 0.00 35.11 4.35
2795 8037 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
2796 8038 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
2797 8039 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
2798 8040 2.260869 CCACTTGTCGCAACCTGGG 61.261 63.158 0.00 0.00 0.00 4.45
2799 8041 1.227823 CACTTGTCGCAACCTGGGA 60.228 57.895 0.00 0.00 36.96 4.37
2800 8042 1.071471 ACTTGTCGCAACCTGGGAG 59.929 57.895 0.00 0.00 40.09 4.30
2801 8043 1.071471 CTTGTCGCAACCTGGGAGT 59.929 57.895 0.00 0.00 40.09 3.85
2802 8044 0.535102 CTTGTCGCAACCTGGGAGTT 60.535 55.000 0.00 0.00 40.09 3.01
2803 8045 0.106918 TTGTCGCAACCTGGGAGTTT 60.107 50.000 0.00 0.00 40.09 2.66
2804 8046 0.106918 TGTCGCAACCTGGGAGTTTT 60.107 50.000 0.00 0.00 40.09 2.43
2805 8047 1.029681 GTCGCAACCTGGGAGTTTTT 58.970 50.000 0.00 0.00 40.09 1.94
2806 8048 1.001706 GTCGCAACCTGGGAGTTTTTC 60.002 52.381 0.00 0.00 40.09 2.29
2807 8049 0.313987 CGCAACCTGGGAGTTTTTCC 59.686 55.000 0.00 0.00 46.00 3.13
2808 8050 1.704641 GCAACCTGGGAGTTTTTCCT 58.295 50.000 0.00 0.00 45.98 3.36
2809 8051 2.039418 GCAACCTGGGAGTTTTTCCTT 58.961 47.619 0.00 0.00 45.98 3.36
2810 8052 2.434336 GCAACCTGGGAGTTTTTCCTTT 59.566 45.455 0.00 0.00 45.98 3.11
2811 8053 3.118408 GCAACCTGGGAGTTTTTCCTTTT 60.118 43.478 0.00 0.00 45.98 2.27
2812 8054 4.625324 GCAACCTGGGAGTTTTTCCTTTTT 60.625 41.667 0.00 0.00 45.98 1.94
2836 8078 9.549509 TTTTCGTAGATCCGTTTATTCAAAATG 57.450 29.630 0.00 0.00 35.04 2.32
2837 8079 7.837202 TCGTAGATCCGTTTATTCAAAATGT 57.163 32.000 0.00 0.00 0.00 2.71
2838 8080 8.259049 TCGTAGATCCGTTTATTCAAAATGTT 57.741 30.769 0.00 0.00 0.00 2.71
2839 8081 8.723311 TCGTAGATCCGTTTATTCAAAATGTTT 58.277 29.630 0.00 0.00 0.00 2.83
2840 8082 9.337091 CGTAGATCCGTTTATTCAAAATGTTTT 57.663 29.630 0.00 0.00 0.00 2.43
2853 8095 6.837992 TCAAAATGTTTTATCTCTACCGTGC 58.162 36.000 0.00 0.00 0.00 5.34
2854 8096 5.464965 AAATGTTTTATCTCTACCGTGCG 57.535 39.130 0.00 0.00 0.00 5.34
2855 8097 3.581024 TGTTTTATCTCTACCGTGCGT 57.419 42.857 0.00 0.00 0.00 5.24
2856 8098 3.504863 TGTTTTATCTCTACCGTGCGTC 58.495 45.455 0.00 0.00 0.00 5.19
2857 8099 2.856557 GTTTTATCTCTACCGTGCGTCC 59.143 50.000 0.00 0.00 0.00 4.79
2858 8100 1.753930 TTATCTCTACCGTGCGTCCA 58.246 50.000 0.00 0.00 0.00 4.02
2859 8101 1.753930 TATCTCTACCGTGCGTCCAA 58.246 50.000 0.00 0.00 0.00 3.53
2860 8102 0.892755 ATCTCTACCGTGCGTCCAAA 59.107 50.000 0.00 0.00 0.00 3.28
2861 8103 0.892755 TCTCTACCGTGCGTCCAAAT 59.107 50.000 0.00 0.00 0.00 2.32
2862 8104 1.135199 TCTCTACCGTGCGTCCAAATC 60.135 52.381 0.00 0.00 0.00 2.17
2863 8105 0.892755 TCTACCGTGCGTCCAAATCT 59.107 50.000 0.00 0.00 0.00 2.40
2864 8106 1.135199 TCTACCGTGCGTCCAAATCTC 60.135 52.381 0.00 0.00 0.00 2.75
2865 8107 0.457166 TACCGTGCGTCCAAATCTCG 60.457 55.000 0.00 0.00 0.00 4.04
2866 8108 1.445410 CCGTGCGTCCAAATCTCGA 60.445 57.895 0.00 0.00 0.00 4.04
2867 8109 1.011968 CCGTGCGTCCAAATCTCGAA 61.012 55.000 0.00 0.00 0.00 3.71
2868 8110 0.093026 CGTGCGTCCAAATCTCGAAC 59.907 55.000 0.00 0.00 0.00 3.95
2869 8111 0.442699 GTGCGTCCAAATCTCGAACC 59.557 55.000 0.00 0.00 0.00 3.62
2870 8112 1.011968 TGCGTCCAAATCTCGAACCG 61.012 55.000 0.00 0.00 0.00 4.44
2871 8113 1.708027 CGTCCAAATCTCGAACCGC 59.292 57.895 0.00 0.00 0.00 5.68
2872 8114 0.736325 CGTCCAAATCTCGAACCGCT 60.736 55.000 0.00 0.00 0.00 5.52
2873 8115 1.439679 GTCCAAATCTCGAACCGCTT 58.560 50.000 0.00 0.00 0.00 4.68
2874 8116 1.804748 GTCCAAATCTCGAACCGCTTT 59.195 47.619 0.00 0.00 0.00 3.51
2875 8117 2.073816 TCCAAATCTCGAACCGCTTTC 58.926 47.619 0.00 0.00 0.00 2.62
2876 8118 1.804151 CCAAATCTCGAACCGCTTTCA 59.196 47.619 0.00 0.00 33.24 2.69
2877 8119 2.420022 CCAAATCTCGAACCGCTTTCAT 59.580 45.455 0.00 0.00 33.24 2.57
2878 8120 3.119849 CCAAATCTCGAACCGCTTTCATT 60.120 43.478 0.00 0.00 33.24 2.57
2879 8121 3.747099 AATCTCGAACCGCTTTCATTG 57.253 42.857 0.00 0.00 33.24 2.82
2880 8122 2.163818 TCTCGAACCGCTTTCATTGT 57.836 45.000 0.00 0.00 33.24 2.71
2881 8123 2.489971 TCTCGAACCGCTTTCATTGTT 58.510 42.857 0.00 0.00 33.24 2.83
2882 8124 2.223144 TCTCGAACCGCTTTCATTGTTG 59.777 45.455 0.00 0.00 33.24 3.33
2883 8125 1.265635 TCGAACCGCTTTCATTGTTGG 59.734 47.619 0.00 0.00 33.24 3.77
2884 8126 1.265635 CGAACCGCTTTCATTGTTGGA 59.734 47.619 0.00 0.00 33.24 3.53
2885 8127 2.095263 CGAACCGCTTTCATTGTTGGAT 60.095 45.455 0.00 0.00 33.24 3.41
2886 8128 3.611530 CGAACCGCTTTCATTGTTGGATT 60.612 43.478 0.00 0.00 33.24 3.01
2887 8129 4.306600 GAACCGCTTTCATTGTTGGATTT 58.693 39.130 0.00 0.00 33.94 2.17
2888 8130 3.913089 ACCGCTTTCATTGTTGGATTTC 58.087 40.909 0.00 0.00 0.00 2.17
2889 8131 3.573967 ACCGCTTTCATTGTTGGATTTCT 59.426 39.130 0.00 0.00 0.00 2.52
2890 8132 4.168760 CCGCTTTCATTGTTGGATTTCTC 58.831 43.478 0.00 0.00 0.00 2.87
2891 8133 4.321156 CCGCTTTCATTGTTGGATTTCTCA 60.321 41.667 0.00 0.00 0.00 3.27
2892 8134 4.618489 CGCTTTCATTGTTGGATTTCTCAC 59.382 41.667 0.00 0.00 0.00 3.51
2893 8135 4.618489 GCTTTCATTGTTGGATTTCTCACG 59.382 41.667 0.00 0.00 0.00 4.35
2894 8136 5.762045 CTTTCATTGTTGGATTTCTCACGT 58.238 37.500 0.00 0.00 0.00 4.49
2895 8137 5.356882 TTCATTGTTGGATTTCTCACGTC 57.643 39.130 0.00 0.00 0.00 4.34
2896 8138 3.431912 TCATTGTTGGATTTCTCACGTCG 59.568 43.478 0.00 0.00 0.00 5.12
2897 8139 2.804697 TGTTGGATTTCTCACGTCGA 57.195 45.000 0.00 0.00 0.00 4.20
2898 8140 2.672714 TGTTGGATTTCTCACGTCGAG 58.327 47.619 0.00 8.24 43.80 4.04
2899 8141 1.993370 GTTGGATTTCTCACGTCGAGG 59.007 52.381 3.03 3.03 42.55 4.63
2900 8142 1.254026 TGGATTTCTCACGTCGAGGT 58.746 50.000 4.63 4.63 42.55 3.85
2901 8143 1.201647 TGGATTTCTCACGTCGAGGTC 59.798 52.381 7.99 0.00 42.55 3.85
2902 8144 1.473278 GGATTTCTCACGTCGAGGTCT 59.527 52.381 7.99 0.00 42.55 3.85
2903 8145 2.094649 GGATTTCTCACGTCGAGGTCTT 60.095 50.000 7.99 0.00 42.55 3.01
2904 8146 2.701073 TTTCTCACGTCGAGGTCTTC 57.299 50.000 7.99 0.00 42.55 2.87
2905 8147 1.601166 TTCTCACGTCGAGGTCTTCA 58.399 50.000 7.99 0.00 42.55 3.02
2906 8148 1.601166 TCTCACGTCGAGGTCTTCAA 58.399 50.000 7.99 0.00 42.55 2.69
2907 8149 1.951602 TCTCACGTCGAGGTCTTCAAA 59.048 47.619 7.99 0.00 42.55 2.69
2908 8150 2.359848 TCTCACGTCGAGGTCTTCAAAA 59.640 45.455 7.99 0.00 42.55 2.44
2909 8151 2.466846 TCACGTCGAGGTCTTCAAAAC 58.533 47.619 7.99 0.00 0.00 2.43
2910 8152 2.100252 TCACGTCGAGGTCTTCAAAACT 59.900 45.455 7.99 0.00 0.00 2.66
2911 8153 3.316029 TCACGTCGAGGTCTTCAAAACTA 59.684 43.478 7.99 0.00 0.00 2.24
2912 8154 3.669122 CACGTCGAGGTCTTCAAAACTAG 59.331 47.826 7.99 0.00 0.00 2.57
2913 8155 3.567164 ACGTCGAGGTCTTCAAAACTAGA 59.433 43.478 4.63 0.00 0.00 2.43
2914 8156 4.217983 ACGTCGAGGTCTTCAAAACTAGAT 59.782 41.667 4.63 0.00 0.00 1.98
2915 8157 4.794246 CGTCGAGGTCTTCAAAACTAGATC 59.206 45.833 0.00 0.00 0.00 2.75
2916 8158 5.103687 GTCGAGGTCTTCAAAACTAGATCC 58.896 45.833 0.00 0.00 0.00 3.36
2917 8159 4.159879 TCGAGGTCTTCAAAACTAGATCCC 59.840 45.833 0.00 0.00 0.00 3.85
2918 8160 4.081642 CGAGGTCTTCAAAACTAGATCCCA 60.082 45.833 0.00 0.00 0.00 4.37
2919 8161 5.395768 CGAGGTCTTCAAAACTAGATCCCAT 60.396 44.000 0.00 0.00 0.00 4.00
2920 8162 5.749462 AGGTCTTCAAAACTAGATCCCATG 58.251 41.667 0.00 0.00 0.00 3.66
2921 8163 5.251700 AGGTCTTCAAAACTAGATCCCATGT 59.748 40.000 0.00 0.00 0.00 3.21
2922 8164 5.586643 GGTCTTCAAAACTAGATCCCATGTC 59.413 44.000 0.00 0.00 0.00 3.06
2923 8165 5.292101 GTCTTCAAAACTAGATCCCATGTCG 59.708 44.000 0.00 0.00 0.00 4.35
2924 8166 5.186992 TCTTCAAAACTAGATCCCATGTCGA 59.813 40.000 0.00 0.00 0.00 4.20
2925 8167 5.614324 TCAAAACTAGATCCCATGTCGAT 57.386 39.130 0.00 0.00 0.00 3.59
2926 8168 6.724893 TCAAAACTAGATCCCATGTCGATA 57.275 37.500 0.00 0.00 0.00 2.92
2927 8169 6.749139 TCAAAACTAGATCCCATGTCGATAG 58.251 40.000 0.00 0.00 0.00 2.08
2928 8170 5.730296 AAACTAGATCCCATGTCGATAGG 57.270 43.478 0.00 0.00 0.00 2.57
2929 8171 4.390129 ACTAGATCCCATGTCGATAGGT 57.610 45.455 0.00 0.00 0.00 3.08
2930 8172 4.742012 ACTAGATCCCATGTCGATAGGTT 58.258 43.478 0.00 0.00 0.00 3.50
2931 8173 5.148502 ACTAGATCCCATGTCGATAGGTTT 58.851 41.667 0.00 0.00 0.00 3.27
2932 8174 5.602978 ACTAGATCCCATGTCGATAGGTTTT 59.397 40.000 0.00 0.00 0.00 2.43
2933 8175 4.708177 AGATCCCATGTCGATAGGTTTTG 58.292 43.478 0.00 0.00 0.00 2.44
2934 8176 4.408921 AGATCCCATGTCGATAGGTTTTGA 59.591 41.667 0.00 0.00 0.00 2.69
2935 8177 3.869065 TCCCATGTCGATAGGTTTTGAC 58.131 45.455 0.00 0.00 0.00 3.18
2936 8178 2.607635 CCCATGTCGATAGGTTTTGACG 59.392 50.000 0.00 0.00 33.42 4.35
2937 8179 3.517602 CCATGTCGATAGGTTTTGACGA 58.482 45.455 0.00 0.00 33.42 4.20
2938 8180 3.930229 CCATGTCGATAGGTTTTGACGAA 59.070 43.478 0.00 0.00 33.42 3.85
2939 8181 4.201685 CCATGTCGATAGGTTTTGACGAAC 60.202 45.833 0.00 0.00 33.42 3.95
2940 8182 4.247267 TGTCGATAGGTTTTGACGAACT 57.753 40.909 0.00 0.00 33.42 3.01
2941 8183 4.624015 TGTCGATAGGTTTTGACGAACTT 58.376 39.130 0.00 0.00 33.42 2.66
2942 8184 5.051816 TGTCGATAGGTTTTGACGAACTTT 58.948 37.500 0.00 0.00 33.42 2.66
2943 8185 5.524646 TGTCGATAGGTTTTGACGAACTTTT 59.475 36.000 0.00 0.00 33.42 2.27
2944 8186 6.037391 TGTCGATAGGTTTTGACGAACTTTTT 59.963 34.615 0.00 0.00 33.42 1.94
2973 8215 1.247567 AAAACGAACTGGGAGCATGG 58.752 50.000 0.00 0.00 0.00 3.66
2974 8216 0.400213 AAACGAACTGGGAGCATGGA 59.600 50.000 0.00 0.00 0.00 3.41
2975 8217 0.620556 AACGAACTGGGAGCATGGAT 59.379 50.000 0.00 0.00 0.00 3.41
2976 8218 0.620556 ACGAACTGGGAGCATGGATT 59.379 50.000 0.00 0.00 0.00 3.01
2977 8219 1.004745 ACGAACTGGGAGCATGGATTT 59.995 47.619 0.00 0.00 0.00 2.17
2978 8220 2.094675 CGAACTGGGAGCATGGATTTT 58.905 47.619 0.00 0.00 0.00 1.82
2979 8221 2.493278 CGAACTGGGAGCATGGATTTTT 59.507 45.455 0.00 0.00 0.00 1.94
2997 8239 1.905637 TTTCCCTTTCCGAAAGAGGC 58.094 50.000 20.43 0.00 41.02 4.70
2998 8240 0.768622 TTCCCTTTCCGAAAGAGGCA 59.231 50.000 20.43 8.95 41.02 4.75
2999 8241 0.036306 TCCCTTTCCGAAAGAGGCAC 59.964 55.000 20.43 0.00 41.02 5.01
3000 8242 1.298859 CCCTTTCCGAAAGAGGCACG 61.299 60.000 20.43 4.41 41.02 5.34
3001 8243 1.497722 CTTTCCGAAAGAGGCACGC 59.502 57.895 14.72 0.00 41.02 5.34
3002 8244 1.912371 CTTTCCGAAAGAGGCACGCC 61.912 60.000 14.72 0.00 41.02 5.68
3003 8245 3.894547 TTCCGAAAGAGGCACGCCC 62.895 63.158 3.95 0.00 36.58 6.13
3014 8256 2.813908 CACGCCCGTGCCTCTTAC 60.814 66.667 7.95 0.00 39.39 2.34
3015 8257 4.430765 ACGCCCGTGCCTCTTACG 62.431 66.667 0.00 0.00 40.98 3.18
3016 8258 4.124351 CGCCCGTGCCTCTTACGA 62.124 66.667 0.00 0.00 43.82 3.43
3017 8259 2.263540 GCCCGTGCCTCTTACGAA 59.736 61.111 0.00 0.00 43.82 3.85
3018 8260 1.375013 GCCCGTGCCTCTTACGAAA 60.375 57.895 0.00 0.00 43.82 3.46
3019 8261 0.743345 GCCCGTGCCTCTTACGAAAT 60.743 55.000 0.00 0.00 43.82 2.17
3020 8262 1.287425 CCCGTGCCTCTTACGAAATC 58.713 55.000 0.00 0.00 43.82 2.17
3021 8263 1.404986 CCCGTGCCTCTTACGAAATCA 60.405 52.381 0.00 0.00 43.82 2.57
3022 8264 1.659098 CCGTGCCTCTTACGAAATCAC 59.341 52.381 0.00 0.00 43.82 3.06
3023 8265 2.333926 CGTGCCTCTTACGAAATCACA 58.666 47.619 0.00 0.00 43.82 3.58
3024 8266 2.734606 CGTGCCTCTTACGAAATCACAA 59.265 45.455 0.00 0.00 43.82 3.33
3025 8267 3.423123 CGTGCCTCTTACGAAATCACAAC 60.423 47.826 0.00 0.00 43.82 3.32
3026 8268 3.071479 TGCCTCTTACGAAATCACAACC 58.929 45.455 0.00 0.00 0.00 3.77
3027 8269 2.093783 GCCTCTTACGAAATCACAACCG 59.906 50.000 0.00 0.00 0.00 4.44
3028 8270 3.323243 CCTCTTACGAAATCACAACCGT 58.677 45.455 0.00 0.00 38.82 4.83
3029 8271 3.122948 CCTCTTACGAAATCACAACCGTG 59.877 47.826 0.00 0.00 45.08 4.94
3030 8272 2.477375 TCTTACGAAATCACAACCGTGC 59.523 45.455 0.00 0.00 43.28 5.34
3031 8273 1.149987 TACGAAATCACAACCGTGCC 58.850 50.000 0.00 0.00 43.28 5.01
3032 8274 0.534203 ACGAAATCACAACCGTGCCT 60.534 50.000 0.00 0.00 43.28 4.75
3033 8275 0.165944 CGAAATCACAACCGTGCCTC 59.834 55.000 0.00 0.00 43.28 4.70
3034 8276 1.523758 GAAATCACAACCGTGCCTCT 58.476 50.000 0.00 0.00 43.28 3.69
3035 8277 1.464997 GAAATCACAACCGTGCCTCTC 59.535 52.381 0.00 0.00 43.28 3.20
3036 8278 0.670546 AATCACAACCGTGCCTCTCG 60.671 55.000 0.00 0.00 43.28 4.04
3037 8279 3.414700 CACAACCGTGCCTCTCGC 61.415 66.667 0.00 0.00 36.06 5.03
3054 8296 4.914291 CGGAAGCAAAACCGTGAC 57.086 55.556 0.00 0.00 43.53 3.67
3055 8297 2.317230 CGGAAGCAAAACCGTGACT 58.683 52.632 0.00 0.00 43.53 3.41
3056 8298 0.234884 CGGAAGCAAAACCGTGACTC 59.765 55.000 0.00 0.00 43.53 3.36
3057 8299 0.234884 GGAAGCAAAACCGTGACTCG 59.765 55.000 0.00 0.00 39.52 4.18
3058 8300 0.384353 GAAGCAAAACCGTGACTCGC 60.384 55.000 0.00 0.00 38.35 5.03
3059 8301 1.092921 AAGCAAAACCGTGACTCGCA 61.093 50.000 0.00 0.00 38.35 5.10
3060 8302 1.092921 AGCAAAACCGTGACTCGCAA 61.093 50.000 0.00 0.00 38.35 4.85
3061 8303 0.248296 GCAAAACCGTGACTCGCAAA 60.248 50.000 0.00 0.00 38.35 3.68
3062 8304 1.795889 GCAAAACCGTGACTCGCAAAA 60.796 47.619 0.00 0.00 38.35 2.44
3063 8305 2.520979 CAAAACCGTGACTCGCAAAAA 58.479 42.857 0.00 0.00 38.35 1.94
3101 8343 1.232119 TTTTTCGTTTCCGAGGAGGC 58.768 50.000 0.00 0.00 45.24 4.70
3102 8344 0.107081 TTTTCGTTTCCGAGGAGGCA 59.893 50.000 0.00 0.00 45.24 4.75
3103 8345 0.601841 TTTCGTTTCCGAGGAGGCAC 60.602 55.000 0.00 0.00 45.24 5.01
3104 8346 2.758770 TTCGTTTCCGAGGAGGCACG 62.759 60.000 11.86 11.86 45.24 5.34
3130 8372 4.848757 GTGACTCTCACAAAATCACAACC 58.151 43.478 0.00 0.00 46.22 3.77
3131 8373 3.559655 TGACTCTCACAAAATCACAACCG 59.440 43.478 0.00 0.00 0.00 4.44
3132 8374 2.290641 ACTCTCACAAAATCACAACCGC 59.709 45.455 0.00 0.00 0.00 5.68
3133 8375 1.262950 TCTCACAAAATCACAACCGCG 59.737 47.619 0.00 0.00 0.00 6.46
3134 8376 0.317436 TCACAAAATCACAACCGCGC 60.317 50.000 0.00 0.00 0.00 6.86
3135 8377 1.007849 ACAAAATCACAACCGCGCC 60.008 52.632 0.00 0.00 0.00 6.53
3136 8378 1.285641 CAAAATCACAACCGCGCCT 59.714 52.632 0.00 0.00 0.00 5.52
3137 8379 0.729140 CAAAATCACAACCGCGCCTC 60.729 55.000 0.00 0.00 0.00 4.70
3138 8380 0.889186 AAAATCACAACCGCGCCTCT 60.889 50.000 0.00 0.00 0.00 3.69
3139 8381 0.889186 AAATCACAACCGCGCCTCTT 60.889 50.000 0.00 0.00 0.00 2.85
3140 8382 1.577328 AATCACAACCGCGCCTCTTG 61.577 55.000 0.00 3.11 0.00 3.02
3141 8383 4.389576 CACAACCGCGCCTCTTGC 62.390 66.667 0.00 0.00 0.00 4.01
3152 8394 2.051879 GCCTCTTGCGGAAGAAAAAC 57.948 50.000 20.33 6.50 37.77 2.43
3153 8395 1.335964 GCCTCTTGCGGAAGAAAAACC 60.336 52.381 20.33 3.80 37.77 3.27
3160 8402 2.943843 CGGAAGAAAAACCGTGACTC 57.056 50.000 0.00 0.00 43.53 3.36
3161 8403 2.480845 CGGAAGAAAAACCGTGACTCT 58.519 47.619 0.00 0.00 43.53 3.24
3162 8404 2.475487 CGGAAGAAAAACCGTGACTCTC 59.525 50.000 0.00 0.00 43.53 3.20
3163 8405 2.475487 GGAAGAAAAACCGTGACTCTCG 59.525 50.000 0.00 0.00 0.00 4.04
3164 8406 1.499049 AGAAAAACCGTGACTCTCGC 58.501 50.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.248024 AGGGATCGATGTAGGCCATAAA 58.752 45.455 5.01 0.00 32.56 1.40
1 2 2.832129 GAGGGATCGATGTAGGCCATAA 59.168 50.000 5.01 0.00 32.56 1.90
2 3 2.225267 TGAGGGATCGATGTAGGCCATA 60.225 50.000 5.01 0.00 32.56 2.74
49 50 5.829924 ACATCATATTTCAACACCTCCATCC 59.170 40.000 0.00 0.00 0.00 3.51
55 56 6.721208 AGGACAAACATCATATTTCAACACCT 59.279 34.615 0.00 0.00 0.00 4.00
82 83 9.924650 TTACTCTAAAATTCTGAACAGGACTAC 57.075 33.333 1.93 0.00 0.00 2.73
139 146 3.558505 CTGAATTGCAAAGAACTCGGTG 58.441 45.455 1.71 0.00 0.00 4.94
151 158 1.610038 CACAGTCCTTGCTGAATTGCA 59.390 47.619 0.00 0.00 41.65 4.08
160 167 1.068748 CATTGCTGACACAGTCCTTGC 60.069 52.381 0.00 0.00 33.43 4.01
168 175 2.081462 CTCATCTGCATTGCTGACACA 58.919 47.619 18.87 6.56 39.15 3.72
256 267 3.291031 ATGGTGCCTCTGCCATGCA 62.291 57.895 0.00 0.00 43.25 3.96
257 268 2.441532 ATGGTGCCTCTGCCATGC 60.442 61.111 0.00 0.00 43.25 4.06
288 301 1.546476 AGTGACACGGAGGCTCTAAAG 59.454 52.381 15.23 6.39 0.00 1.85
456 476 7.810282 CGTGAATACAGAAGAAGAAAGAGAGAA 59.190 37.037 0.00 0.00 0.00 2.87
507 530 6.174760 AGTTTTAGTTATTGTATCCCACGCA 58.825 36.000 0.00 0.00 0.00 5.24
584 2071 8.132362 ACGATATGATACTGAACACTCTCTTTC 58.868 37.037 0.00 0.00 0.00 2.62
588 2075 8.343366 TGTTACGATATGATACTGAACACTCTC 58.657 37.037 0.00 0.00 0.00 3.20
601 2088 8.517056 TGTTATGATACGGTGTTACGATATGAT 58.483 33.333 0.00 0.00 37.61 2.45
608 2095 6.089820 AGTGTTTGTTATGATACGGTGTTACG 59.910 38.462 0.00 0.00 40.31 3.18
661 2148 8.123639 AGGAGTATATGATACTACGCACATTT 57.876 34.615 3.70 0.00 33.68 2.32
662 2149 7.704578 AGGAGTATATGATACTACGCACATT 57.295 36.000 3.70 0.00 33.68 2.71
681 2168 6.320518 TCCTATATTATGGGACGAAAGGAGT 58.679 40.000 4.74 0.00 34.71 3.85
686 2173 6.989155 ACACTCCTATATTATGGGACGAAA 57.011 37.500 4.74 0.00 34.71 3.46
692 2179 8.850156 CCTTCAAAAACACTCCTATATTATGGG 58.150 37.037 0.00 0.00 0.00 4.00
693 2180 8.850156 CCCTTCAAAAACACTCCTATATTATGG 58.150 37.037 0.00 0.00 0.00 2.74
703 2190 4.758165 TCGTATTCCCTTCAAAAACACTCC 59.242 41.667 0.00 0.00 0.00 3.85
707 2194 5.369833 TGACTCGTATTCCCTTCAAAAACA 58.630 37.500 0.00 0.00 0.00 2.83
763 2513 2.764314 GCCAACGCATAGCCCTGTG 61.764 63.158 0.00 0.00 34.03 3.66
782 2532 8.774890 ATCATGAATAGTATTCTCAGTGCATC 57.225 34.615 20.80 0.00 0.00 3.91
931 2681 0.036875 GCCTGGAGGTATGGTATGCC 59.963 60.000 0.00 0.00 37.57 4.40
944 2694 1.007600 TCTCTTCTGATGAGGCCTGGA 59.992 52.381 12.00 0.00 32.78 3.86
952 2702 3.376859 GTCTTCGCTCTCTCTTCTGATGA 59.623 47.826 0.00 0.00 0.00 2.92
953 2703 3.378112 AGTCTTCGCTCTCTCTTCTGATG 59.622 47.826 0.00 0.00 0.00 3.07
954 2704 3.378112 CAGTCTTCGCTCTCTCTTCTGAT 59.622 47.826 0.00 0.00 0.00 2.90
974 2724 4.749323 TGCAGGAGGGAATTGCAG 57.251 55.556 0.00 0.00 42.41 4.41
1011 2764 1.523938 GGGAGCGATGTTGGTAGCC 60.524 63.158 0.00 0.00 0.00 3.93
1061 2817 1.227793 GATCTAGCCCCTGCAGCAC 60.228 63.158 8.66 0.00 41.13 4.40
1111 2867 2.141517 CGGATGGCTAGATTGCAAGAG 58.858 52.381 4.94 3.32 34.04 2.85
1113 2869 1.869767 GACGGATGGCTAGATTGCAAG 59.130 52.381 4.94 0.00 34.04 4.01
1182 2941 1.271871 ACGTTGCCATTGGAGATTCCA 60.272 47.619 6.95 0.00 46.61 3.53
1309 3079 4.252971 TCAAAGAACTTGTCCGTCCTAG 57.747 45.455 0.00 0.00 36.34 3.02
1328 3101 0.895530 GGACGGTCATCTCCAGTTCA 59.104 55.000 10.76 0.00 0.00 3.18
1361 3134 1.822990 TGAACGACTCCATACTGGTCC 59.177 52.381 0.00 0.00 39.03 4.46
1429 3202 0.952280 CCGAGCTCTGCGGTAGATAA 59.048 55.000 12.85 0.00 43.66 1.75
1479 3366 5.912955 CGAGAACAAATTAAGAACCAACACC 59.087 40.000 0.00 0.00 0.00 4.16
1493 3380 3.771577 AACCTCCAGTCGAGAACAAAT 57.228 42.857 0.00 0.00 41.63 2.32
1500 3388 1.900486 AGGGTTTAACCTCCAGTCGAG 59.100 52.381 14.27 0.00 38.64 4.04
1665 3554 3.456277 ACTTGAGGTTCAGTTCCAAGACT 59.544 43.478 0.00 0.00 38.02 3.24
1726 3619 1.558756 AGCCTTGAGATTCCCAGTCTG 59.441 52.381 0.00 0.00 0.00 3.51
1729 3622 3.532641 AAAAGCCTTGAGATTCCCAGT 57.467 42.857 0.00 0.00 0.00 4.00
1745 3638 6.285224 AGGTTTCCGGGTTTGAAAATAAAAG 58.715 36.000 0.00 0.00 33.80 2.27
1928 3831 3.992943 TCAGTACAAGGGGTGGTAATG 57.007 47.619 0.00 0.00 37.03 1.90
1970 3879 1.069823 CATCAGAGGAGATCAACGGGG 59.930 57.143 0.00 0.00 0.00 5.73
1995 3904 2.682136 AAGCTGCCATGCCATGCA 60.682 55.556 0.00 0.51 44.86 3.96
2098 4007 2.509561 GGGACGAGAAGAAGCGCC 60.510 66.667 2.29 0.00 0.00 6.53
2273 4332 6.086222 CCAGATGTCGTCCAAACTTTTATTG 58.914 40.000 0.00 0.00 0.00 1.90
2341 7572 7.332678 AGCATCTTGAATGCCTAAAAATTTCAC 59.667 33.333 6.40 0.00 45.59 3.18
2420 7652 7.415095 CCAGTGAACAGTACATTCAGAAAAACA 60.415 37.037 11.64 0.00 36.76 2.83
2421 7653 6.912591 CCAGTGAACAGTACATTCAGAAAAAC 59.087 38.462 11.64 1.84 36.76 2.43
2427 7659 5.240891 ACATCCAGTGAACAGTACATTCAG 58.759 41.667 11.64 3.49 36.76 3.02
2447 7679 0.543749 GTGCCCAGGCTCTTCTACAT 59.456 55.000 10.58 0.00 42.51 2.29
2449 7681 1.222113 GGTGCCCAGGCTCTTCTAC 59.778 63.158 10.58 0.00 42.51 2.59
2450 7682 2.359169 CGGTGCCCAGGCTCTTCTA 61.359 63.158 10.58 0.00 42.51 2.10
2451 7683 3.710722 CGGTGCCCAGGCTCTTCT 61.711 66.667 10.58 0.00 42.51 2.85
2458 7690 1.535204 AATTCAAAGCGGTGCCCAGG 61.535 55.000 0.00 0.00 0.00 4.45
2459 7691 1.173043 TAATTCAAAGCGGTGCCCAG 58.827 50.000 0.00 0.00 0.00 4.45
2460 7692 1.846007 ATAATTCAAAGCGGTGCCCA 58.154 45.000 0.00 0.00 0.00 5.36
2461 7693 2.539476 CAATAATTCAAAGCGGTGCCC 58.461 47.619 0.00 0.00 0.00 5.36
2462 7694 1.926510 GCAATAATTCAAAGCGGTGCC 59.073 47.619 0.00 0.00 0.00 5.01
2463 7695 1.583404 CGCAATAATTCAAAGCGGTGC 59.417 47.619 0.00 0.00 44.20 5.01
2468 7700 6.029607 TGAATCACTCGCAATAATTCAAAGC 58.970 36.000 0.00 0.00 34.39 3.51
2469 7701 6.195983 GCTGAATCACTCGCAATAATTCAAAG 59.804 38.462 0.00 0.00 36.29 2.77
2480 7712 1.205655 AGCTTAGCTGAATCACTCGCA 59.794 47.619 5.70 0.00 37.57 5.10
2510 7742 3.947196 TCTCAAACACAAGCACACAAGAT 59.053 39.130 0.00 0.00 0.00 2.40
2552 7793 3.268023 ACAAGATCGAGATGAAACCCC 57.732 47.619 0.00 0.00 0.00 4.95
2554 7795 6.251549 GCTTTTACAAGATCGAGATGAAACC 58.748 40.000 0.00 0.00 30.57 3.27
2562 7803 4.003648 AGTTGGGCTTTTACAAGATCGAG 58.996 43.478 0.00 0.00 30.57 4.04
2581 7822 7.670364 AGGCTTGTGCTGATATTTTAAAAGTT 58.330 30.769 6.79 0.00 39.59 2.66
2584 7825 7.441017 ACAAGGCTTGTGCTGATATTTTAAAA 58.559 30.769 30.71 2.51 43.48 1.52
2609 7850 0.263172 TTTGGGCTTCCACCTTCCAA 59.737 50.000 0.00 0.00 40.91 3.53
2610 7851 0.469144 GTTTGGGCTTCCACCTTCCA 60.469 55.000 0.00 0.00 40.91 3.53
2611 7852 0.178961 AGTTTGGGCTTCCACCTTCC 60.179 55.000 0.00 0.00 40.91 3.46
2612 7853 2.579410 TAGTTTGGGCTTCCACCTTC 57.421 50.000 0.00 0.00 40.91 3.46
2613 7854 2.291605 GGATAGTTTGGGCTTCCACCTT 60.292 50.000 0.00 0.00 40.91 3.50
2614 7855 1.285078 GGATAGTTTGGGCTTCCACCT 59.715 52.381 0.00 0.00 40.91 4.00
2615 7856 1.285078 AGGATAGTTTGGGCTTCCACC 59.715 52.381 0.00 0.00 40.91 4.61
2616 7857 2.239907 AGAGGATAGTTTGGGCTTCCAC 59.760 50.000 0.00 0.00 40.91 4.02
2676 7918 3.914426 AAATTGTAGCTCAGATCGGGT 57.086 42.857 0.00 0.00 0.00 5.28
2692 7934 9.831737 CTCATCAACTAGTGATTTCGAAAAATT 57.168 29.630 15.66 5.99 45.13 1.82
2698 7940 9.087424 CAAATACTCATCAACTAGTGATTTCGA 57.913 33.333 0.00 0.00 45.13 3.71
2699 7941 8.873830 ACAAATACTCATCAACTAGTGATTTCG 58.126 33.333 0.00 0.00 45.13 3.46
2702 7944 8.454106 GCAACAAATACTCATCAACTAGTGATT 58.546 33.333 0.00 0.00 45.13 2.57
2704 7946 6.934083 TGCAACAAATACTCATCAACTAGTGA 59.066 34.615 0.00 0.00 41.67 3.41
2705 7947 7.132694 TGCAACAAATACTCATCAACTAGTG 57.867 36.000 0.00 0.00 0.00 2.74
2706 7948 7.744087 TTGCAACAAATACTCATCAACTAGT 57.256 32.000 0.00 0.00 0.00 2.57
2707 7949 8.506437 TCTTTGCAACAAATACTCATCAACTAG 58.494 33.333 0.00 0.00 0.00 2.57
2708 7950 8.389779 TCTTTGCAACAAATACTCATCAACTA 57.610 30.769 0.00 0.00 0.00 2.24
2709 7951 7.275888 TCTTTGCAACAAATACTCATCAACT 57.724 32.000 0.00 0.00 0.00 3.16
2710 7952 7.809331 TGATCTTTGCAACAAATACTCATCAAC 59.191 33.333 0.00 0.00 0.00 3.18
2711 7953 7.809331 GTGATCTTTGCAACAAATACTCATCAA 59.191 33.333 0.00 0.00 0.00 2.57
2712 7954 7.175467 AGTGATCTTTGCAACAAATACTCATCA 59.825 33.333 0.00 0.00 0.00 3.07
2713 7955 7.533426 AGTGATCTTTGCAACAAATACTCATC 58.467 34.615 0.00 0.00 0.00 2.92
2714 7956 7.362401 GGAGTGATCTTTGCAACAAATACTCAT 60.362 37.037 22.89 0.00 34.17 2.90
2715 7957 6.072508 GGAGTGATCTTTGCAACAAATACTCA 60.073 38.462 22.89 9.43 34.17 3.41
2716 7958 6.072508 TGGAGTGATCTTTGCAACAAATACTC 60.073 38.462 17.46 17.46 0.00 2.59
2717 7959 5.769662 TGGAGTGATCTTTGCAACAAATACT 59.230 36.000 0.00 1.28 0.00 2.12
2718 7960 6.012658 TGGAGTGATCTTTGCAACAAATAC 57.987 37.500 0.00 0.00 0.00 1.89
2719 7961 6.446318 GTTGGAGTGATCTTTGCAACAAATA 58.554 36.000 20.79 0.00 42.80 1.40
2720 7962 5.291971 GTTGGAGTGATCTTTGCAACAAAT 58.708 37.500 20.79 0.00 42.80 2.32
2721 7963 4.441356 GGTTGGAGTGATCTTTGCAACAAA 60.441 41.667 24.24 0.00 44.37 2.83
2722 7964 3.068024 GGTTGGAGTGATCTTTGCAACAA 59.932 43.478 24.24 0.00 44.37 2.83
2723 7965 2.622942 GGTTGGAGTGATCTTTGCAACA 59.377 45.455 24.24 0.00 44.37 3.33
2724 7966 2.887152 AGGTTGGAGTGATCTTTGCAAC 59.113 45.455 18.88 18.88 42.62 4.17
2725 7967 3.149196 GAGGTTGGAGTGATCTTTGCAA 58.851 45.455 0.00 0.00 0.00 4.08
2726 7968 2.553028 GGAGGTTGGAGTGATCTTTGCA 60.553 50.000 0.00 0.00 0.00 4.08
2727 7969 2.087646 GGAGGTTGGAGTGATCTTTGC 58.912 52.381 0.00 0.00 0.00 3.68
2728 7970 3.710209 AGGAGGTTGGAGTGATCTTTG 57.290 47.619 0.00 0.00 0.00 2.77
2729 7971 3.777522 CCTAGGAGGTTGGAGTGATCTTT 59.222 47.826 1.05 0.00 0.00 2.52
2730 7972 3.379452 CCTAGGAGGTTGGAGTGATCTT 58.621 50.000 1.05 0.00 0.00 2.40
2731 7973 3.039252 CCTAGGAGGTTGGAGTGATCT 57.961 52.381 1.05 0.00 0.00 2.75
2743 7985 2.289694 CCACTTGTCACAACCTAGGAGG 60.290 54.545 17.98 9.40 42.49 4.30
2744 7986 2.872038 GCCACTTGTCACAACCTAGGAG 60.872 54.545 17.98 10.18 0.00 3.69
2745 7987 1.071699 GCCACTTGTCACAACCTAGGA 59.928 52.381 17.98 0.00 0.00 2.94
2746 7988 1.523758 GCCACTTGTCACAACCTAGG 58.476 55.000 7.41 7.41 0.00 3.02
2747 7989 1.148310 CGCCACTTGTCACAACCTAG 58.852 55.000 0.00 0.00 0.00 3.02
2748 7990 0.882927 GCGCCACTTGTCACAACCTA 60.883 55.000 0.00 0.00 0.00 3.08
2749 7991 2.186826 GCGCCACTTGTCACAACCT 61.187 57.895 0.00 0.00 0.00 3.50
2750 7992 2.331451 GCGCCACTTGTCACAACC 59.669 61.111 0.00 0.00 0.00 3.77
2751 7993 2.052237 CGCGCCACTTGTCACAAC 60.052 61.111 0.00 0.00 0.00 3.32
2752 7994 3.947841 GCGCGCCACTTGTCACAA 61.948 61.111 23.24 0.00 0.00 3.33
2753 7995 4.908687 AGCGCGCCACTTGTCACA 62.909 61.111 30.33 0.00 0.00 3.58
2754 7996 4.077188 GAGCGCGCCACTTGTCAC 62.077 66.667 30.33 4.35 0.00 3.67
2757 7999 4.742201 ATCGAGCGCGCCACTTGT 62.742 61.111 30.33 8.00 37.46 3.16
2758 8000 4.214383 CATCGAGCGCGCCACTTG 62.214 66.667 30.33 17.12 37.46 3.16
2759 8001 4.742201 ACATCGAGCGCGCCACTT 62.742 61.111 30.33 9.44 37.46 3.16
2768 8010 3.121030 AAGTGGCGCACATCGAGC 61.121 61.111 10.83 0.00 41.67 5.03
2769 8011 1.959899 GACAAGTGGCGCACATCGAG 61.960 60.000 10.83 0.00 41.67 4.04
2770 8012 2.027073 GACAAGTGGCGCACATCGA 61.027 57.895 10.83 0.00 41.67 3.59
2771 8013 2.476051 GACAAGTGGCGCACATCG 59.524 61.111 10.83 0.00 36.74 3.84
2772 8014 2.476051 CGACAAGTGGCGCACATC 59.524 61.111 10.83 4.58 40.91 3.06
2779 8021 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
2780 8022 2.260869 CCCAGGTTGCGACAAGTGG 61.261 63.158 6.39 9.17 0.00 4.00
2781 8023 1.227823 TCCCAGGTTGCGACAAGTG 60.228 57.895 6.39 0.00 0.00 3.16
2782 8024 1.071471 CTCCCAGGTTGCGACAAGT 59.929 57.895 6.39 0.00 0.00 3.16
2783 8025 0.535102 AACTCCCAGGTTGCGACAAG 60.535 55.000 6.39 0.00 0.00 3.16
2784 8026 0.106918 AAACTCCCAGGTTGCGACAA 60.107 50.000 6.39 0.00 0.00 3.18
2785 8027 0.106918 AAAACTCCCAGGTTGCGACA 60.107 50.000 6.39 0.00 0.00 4.35
2786 8028 1.001706 GAAAAACTCCCAGGTTGCGAC 60.002 52.381 0.00 0.00 0.00 5.19
2787 8029 1.314730 GAAAAACTCCCAGGTTGCGA 58.685 50.000 0.00 0.00 0.00 5.10
2788 8030 0.313987 GGAAAAACTCCCAGGTTGCG 59.686 55.000 0.00 0.00 38.44 4.85
2789 8031 1.704641 AGGAAAAACTCCCAGGTTGC 58.295 50.000 0.00 0.00 46.81 4.17
2790 8032 4.753516 AAAAGGAAAAACTCCCAGGTTG 57.246 40.909 0.00 0.00 46.81 3.77
2810 8052 9.549509 CATTTTGAATAAACGGATCTACGAAAA 57.450 29.630 0.00 0.00 37.61 2.29
2811 8053 8.723311 ACATTTTGAATAAACGGATCTACGAAA 58.277 29.630 0.00 0.00 37.61 3.46
2812 8054 8.259049 ACATTTTGAATAAACGGATCTACGAA 57.741 30.769 0.00 0.00 37.61 3.85
2813 8055 7.837202 ACATTTTGAATAAACGGATCTACGA 57.163 32.000 0.00 0.00 37.61 3.43
2814 8056 8.889849 AAACATTTTGAATAAACGGATCTACG 57.110 30.769 0.00 0.00 40.31 3.51
2827 8069 7.968405 GCACGGTAGAGATAAAACATTTTGAAT 59.032 33.333 0.00 0.00 0.00 2.57
2828 8070 7.302524 GCACGGTAGAGATAAAACATTTTGAA 58.697 34.615 0.00 0.00 0.00 2.69
2829 8071 6.401688 CGCACGGTAGAGATAAAACATTTTGA 60.402 38.462 0.00 0.00 0.00 2.69
2830 8072 5.732647 CGCACGGTAGAGATAAAACATTTTG 59.267 40.000 0.00 0.00 0.00 2.44
2831 8073 5.410439 ACGCACGGTAGAGATAAAACATTTT 59.590 36.000 0.00 0.00 0.00 1.82
2832 8074 4.933400 ACGCACGGTAGAGATAAAACATTT 59.067 37.500 0.00 0.00 0.00 2.32
2833 8075 4.501071 ACGCACGGTAGAGATAAAACATT 58.499 39.130 0.00 0.00 0.00 2.71
2834 8076 4.110482 GACGCACGGTAGAGATAAAACAT 58.890 43.478 0.00 0.00 0.00 2.71
2835 8077 3.504863 GACGCACGGTAGAGATAAAACA 58.495 45.455 0.00 0.00 0.00 2.83
2836 8078 2.856557 GGACGCACGGTAGAGATAAAAC 59.143 50.000 0.00 0.00 0.00 2.43
2837 8079 2.492881 TGGACGCACGGTAGAGATAAAA 59.507 45.455 0.00 0.00 0.00 1.52
2838 8080 2.093890 TGGACGCACGGTAGAGATAAA 58.906 47.619 0.00 0.00 0.00 1.40
2839 8081 1.753930 TGGACGCACGGTAGAGATAA 58.246 50.000 0.00 0.00 0.00 1.75
2840 8082 1.753930 TTGGACGCACGGTAGAGATA 58.246 50.000 0.00 0.00 0.00 1.98
2841 8083 0.892755 TTTGGACGCACGGTAGAGAT 59.107 50.000 0.00 0.00 0.00 2.75
2842 8084 0.892755 ATTTGGACGCACGGTAGAGA 59.107 50.000 0.00 0.00 0.00 3.10
2843 8085 1.135083 AGATTTGGACGCACGGTAGAG 60.135 52.381 0.00 0.00 0.00 2.43
2844 8086 0.892755 AGATTTGGACGCACGGTAGA 59.107 50.000 0.00 0.00 0.00 2.59
2845 8087 1.278238 GAGATTTGGACGCACGGTAG 58.722 55.000 0.00 0.00 0.00 3.18
2846 8088 0.457166 CGAGATTTGGACGCACGGTA 60.457 55.000 0.00 0.00 0.00 4.02
2847 8089 1.736645 CGAGATTTGGACGCACGGT 60.737 57.895 0.00 0.00 0.00 4.83
2848 8090 1.011968 TTCGAGATTTGGACGCACGG 61.012 55.000 0.00 0.00 0.00 4.94
2849 8091 0.093026 GTTCGAGATTTGGACGCACG 59.907 55.000 0.00 0.00 0.00 5.34
2850 8092 0.442699 GGTTCGAGATTTGGACGCAC 59.557 55.000 0.00 0.00 0.00 5.34
2851 8093 1.011968 CGGTTCGAGATTTGGACGCA 61.012 55.000 0.00 0.00 0.00 5.24
2852 8094 1.708027 CGGTTCGAGATTTGGACGC 59.292 57.895 0.00 0.00 0.00 5.19
2853 8095 0.736325 AGCGGTTCGAGATTTGGACG 60.736 55.000 0.00 0.00 0.00 4.79
2854 8096 1.439679 AAGCGGTTCGAGATTTGGAC 58.560 50.000 0.00 0.00 0.00 4.02
2855 8097 2.073816 GAAAGCGGTTCGAGATTTGGA 58.926 47.619 0.00 0.00 0.00 3.53
2856 8098 1.804151 TGAAAGCGGTTCGAGATTTGG 59.196 47.619 0.00 0.00 39.30 3.28
2857 8099 3.747099 ATGAAAGCGGTTCGAGATTTG 57.253 42.857 0.00 0.00 39.30 2.32
2858 8100 3.502211 ACAATGAAAGCGGTTCGAGATTT 59.498 39.130 0.00 0.00 39.30 2.17
2859 8101 3.074412 ACAATGAAAGCGGTTCGAGATT 58.926 40.909 0.00 0.00 39.30 2.40
2860 8102 2.699954 ACAATGAAAGCGGTTCGAGAT 58.300 42.857 0.00 0.00 39.30 2.75
2861 8103 2.163818 ACAATGAAAGCGGTTCGAGA 57.836 45.000 0.00 0.00 39.30 4.04
2862 8104 2.574322 CAACAATGAAAGCGGTTCGAG 58.426 47.619 0.00 0.00 39.30 4.04
2863 8105 1.265635 CCAACAATGAAAGCGGTTCGA 59.734 47.619 0.00 0.00 39.30 3.71
2864 8106 1.265635 TCCAACAATGAAAGCGGTTCG 59.734 47.619 0.00 0.00 39.30 3.95
2865 8107 3.575965 ATCCAACAATGAAAGCGGTTC 57.424 42.857 0.00 0.00 36.70 3.62
2866 8108 4.039124 AGAAATCCAACAATGAAAGCGGTT 59.961 37.500 0.00 0.00 0.00 4.44
2867 8109 3.573967 AGAAATCCAACAATGAAAGCGGT 59.426 39.130 0.00 0.00 0.00 5.68
2868 8110 4.168760 GAGAAATCCAACAATGAAAGCGG 58.831 43.478 0.00 0.00 0.00 5.52
2869 8111 4.618489 GTGAGAAATCCAACAATGAAAGCG 59.382 41.667 0.00 0.00 0.00 4.68
2870 8112 4.618489 CGTGAGAAATCCAACAATGAAAGC 59.382 41.667 0.00 0.00 0.00 3.51
2871 8113 5.762045 ACGTGAGAAATCCAACAATGAAAG 58.238 37.500 0.00 0.00 0.00 2.62
2872 8114 5.559991 CGACGTGAGAAATCCAACAATGAAA 60.560 40.000 0.00 0.00 0.00 2.69
2873 8115 4.084066 CGACGTGAGAAATCCAACAATGAA 60.084 41.667 0.00 0.00 0.00 2.57
2874 8116 3.431912 CGACGTGAGAAATCCAACAATGA 59.568 43.478 0.00 0.00 0.00 2.57
2875 8117 3.431912 TCGACGTGAGAAATCCAACAATG 59.568 43.478 0.00 0.00 0.00 2.82
2876 8118 3.659786 TCGACGTGAGAAATCCAACAAT 58.340 40.909 0.00 0.00 0.00 2.71
2877 8119 3.100658 TCGACGTGAGAAATCCAACAA 57.899 42.857 0.00 0.00 0.00 2.83
2878 8120 2.804697 TCGACGTGAGAAATCCAACA 57.195 45.000 0.00 0.00 0.00 3.33
2888 8130 2.417339 TTTGAAGACCTCGACGTGAG 57.583 50.000 0.00 0.00 44.83 3.51
2889 8131 2.100252 AGTTTTGAAGACCTCGACGTGA 59.900 45.455 0.00 0.00 0.00 4.35
2890 8132 2.470821 AGTTTTGAAGACCTCGACGTG 58.529 47.619 0.00 0.00 0.00 4.49
2891 8133 2.884894 AGTTTTGAAGACCTCGACGT 57.115 45.000 0.00 0.00 0.00 4.34
2892 8134 4.156664 TCTAGTTTTGAAGACCTCGACG 57.843 45.455 0.00 0.00 0.00 5.12
2893 8135 5.103687 GGATCTAGTTTTGAAGACCTCGAC 58.896 45.833 0.00 0.00 0.00 4.20
2894 8136 4.159879 GGGATCTAGTTTTGAAGACCTCGA 59.840 45.833 0.00 0.00 0.00 4.04
2895 8137 4.081642 TGGGATCTAGTTTTGAAGACCTCG 60.082 45.833 0.00 0.00 0.00 4.63
2896 8138 5.422214 TGGGATCTAGTTTTGAAGACCTC 57.578 43.478 0.00 0.00 0.00 3.85
2897 8139 5.251700 ACATGGGATCTAGTTTTGAAGACCT 59.748 40.000 0.00 0.00 0.00 3.85
2898 8140 5.501156 ACATGGGATCTAGTTTTGAAGACC 58.499 41.667 0.00 0.00 0.00 3.85
2899 8141 5.292101 CGACATGGGATCTAGTTTTGAAGAC 59.708 44.000 0.00 0.00 0.00 3.01
2900 8142 5.186992 TCGACATGGGATCTAGTTTTGAAGA 59.813 40.000 0.00 0.00 0.00 2.87
2901 8143 5.419542 TCGACATGGGATCTAGTTTTGAAG 58.580 41.667 0.00 0.00 0.00 3.02
2902 8144 5.414789 TCGACATGGGATCTAGTTTTGAA 57.585 39.130 0.00 0.00 0.00 2.69
2903 8145 5.614324 ATCGACATGGGATCTAGTTTTGA 57.386 39.130 0.00 0.00 0.00 2.69
2904 8146 5.928839 CCTATCGACATGGGATCTAGTTTTG 59.071 44.000 4.96 0.00 32.06 2.44
2905 8147 5.602978 ACCTATCGACATGGGATCTAGTTTT 59.397 40.000 4.96 0.00 34.16 2.43
2906 8148 5.148502 ACCTATCGACATGGGATCTAGTTT 58.851 41.667 4.96 0.00 34.16 2.66
2907 8149 4.742012 ACCTATCGACATGGGATCTAGTT 58.258 43.478 4.96 0.00 34.16 2.24
2908 8150 4.390129 ACCTATCGACATGGGATCTAGT 57.610 45.455 4.96 0.51 34.16 2.57
2909 8151 5.730296 AAACCTATCGACATGGGATCTAG 57.270 43.478 4.96 0.00 34.16 2.43
2910 8152 5.600898 TCAAAACCTATCGACATGGGATCTA 59.399 40.000 4.96 0.00 34.16 1.98
2911 8153 4.408921 TCAAAACCTATCGACATGGGATCT 59.591 41.667 4.96 0.00 34.16 2.75
2912 8154 4.511826 GTCAAAACCTATCGACATGGGATC 59.488 45.833 4.96 0.00 34.16 3.36
2913 8155 4.451900 GTCAAAACCTATCGACATGGGAT 58.548 43.478 0.00 2.05 34.16 3.85
2914 8156 3.677700 CGTCAAAACCTATCGACATGGGA 60.678 47.826 0.00 0.00 34.16 4.37
2915 8157 2.607635 CGTCAAAACCTATCGACATGGG 59.392 50.000 0.00 0.00 36.68 4.00
2916 8158 3.517602 TCGTCAAAACCTATCGACATGG 58.482 45.455 0.00 0.00 0.00 3.66
2917 8159 4.625742 AGTTCGTCAAAACCTATCGACATG 59.374 41.667 0.00 0.00 0.00 3.21
2918 8160 4.817517 AGTTCGTCAAAACCTATCGACAT 58.182 39.130 0.00 0.00 0.00 3.06
2919 8161 4.247267 AGTTCGTCAAAACCTATCGACA 57.753 40.909 0.00 0.00 0.00 4.35
2920 8162 5.587033 AAAGTTCGTCAAAACCTATCGAC 57.413 39.130 0.00 0.00 0.00 4.20
2921 8163 6.607735 AAAAAGTTCGTCAAAACCTATCGA 57.392 33.333 0.00 0.00 0.00 3.59
2953 8195 1.613437 CCATGCTCCCAGTTCGTTTTT 59.387 47.619 0.00 0.00 0.00 1.94
2954 8196 1.202879 TCCATGCTCCCAGTTCGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
2955 8197 0.400213 TCCATGCTCCCAGTTCGTTT 59.600 50.000 0.00 0.00 0.00 3.60
2956 8198 0.620556 ATCCATGCTCCCAGTTCGTT 59.379 50.000 0.00 0.00 0.00 3.85
2957 8199 0.620556 AATCCATGCTCCCAGTTCGT 59.379 50.000 0.00 0.00 0.00 3.85
2958 8200 1.755179 AAATCCATGCTCCCAGTTCG 58.245 50.000 0.00 0.00 0.00 3.95
2976 8218 2.626266 GCCTCTTTCGGAAAGGGAAAAA 59.374 45.455 27.71 9.07 41.66 1.94
2977 8219 2.235891 GCCTCTTTCGGAAAGGGAAAA 58.764 47.619 27.71 9.72 41.66 2.29
2978 8220 1.144093 TGCCTCTTTCGGAAAGGGAAA 59.856 47.619 27.71 14.52 41.66 3.13
2979 8221 0.768622 TGCCTCTTTCGGAAAGGGAA 59.231 50.000 27.71 19.29 41.66 3.97
2980 8222 0.036306 GTGCCTCTTTCGGAAAGGGA 59.964 55.000 27.71 14.21 41.66 4.20
2981 8223 1.298859 CGTGCCTCTTTCGGAAAGGG 61.299 60.000 25.66 23.41 38.75 3.95
2982 8224 1.912371 GCGTGCCTCTTTCGGAAAGG 61.912 60.000 25.66 15.57 39.01 3.11
2983 8225 1.497722 GCGTGCCTCTTTCGGAAAG 59.502 57.895 21.64 21.64 39.88 2.62
2984 8226 1.964373 GGCGTGCCTCTTTCGGAAA 60.964 57.895 2.98 2.78 0.00 3.13
2985 8227 2.358247 GGCGTGCCTCTTTCGGAA 60.358 61.111 2.98 0.00 0.00 4.30
2986 8228 4.388499 GGGCGTGCCTCTTTCGGA 62.388 66.667 11.25 0.00 36.10 4.55
2989 8231 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
2998 8240 4.430765 CGTAAGAGGCACGGGCGT 62.431 66.667 3.58 3.58 40.25 5.68
2999 8241 4.124351 TCGTAAGAGGCACGGGCG 62.124 66.667 2.17 0.00 45.01 6.13
3030 8272 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
3031 8273 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
3032 8274 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
3033 8275 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
3038 8280 0.234884 CGAGTCACGGTTTTGCTTCC 59.765 55.000 0.00 0.00 38.46 3.46
3039 8281 0.384353 GCGAGTCACGGTTTTGCTTC 60.384 55.000 0.00 0.00 42.83 3.86
3040 8282 1.092921 TGCGAGTCACGGTTTTGCTT 61.093 50.000 0.00 0.00 42.83 3.91
3041 8283 1.092921 TTGCGAGTCACGGTTTTGCT 61.093 50.000 0.00 0.00 42.83 3.91
3042 8284 0.248296 TTTGCGAGTCACGGTTTTGC 60.248 50.000 0.00 0.00 42.83 3.68
3043 8285 2.181426 TTTTGCGAGTCACGGTTTTG 57.819 45.000 0.00 0.00 42.83 2.44
3044 8286 2.923605 TTTTTGCGAGTCACGGTTTT 57.076 40.000 0.00 0.00 42.83 2.43
3100 8342 4.357947 TGAGAGTCACGGCCGTGC 62.358 66.667 45.55 38.06 45.04 5.34
3101 8343 2.430921 GTGAGAGTCACGGCCGTG 60.431 66.667 45.04 45.04 46.64 4.94
3109 8351 3.559655 CGGTTGTGATTTTGTGAGAGTCA 59.440 43.478 0.00 0.00 0.00 3.41
3110 8352 3.607078 GCGGTTGTGATTTTGTGAGAGTC 60.607 47.826 0.00 0.00 0.00 3.36
3111 8353 2.290641 GCGGTTGTGATTTTGTGAGAGT 59.709 45.455 0.00 0.00 0.00 3.24
3112 8354 2.662791 CGCGGTTGTGATTTTGTGAGAG 60.663 50.000 0.00 0.00 0.00 3.20
3113 8355 1.262950 CGCGGTTGTGATTTTGTGAGA 59.737 47.619 0.00 0.00 0.00 3.27
3114 8356 1.673760 CGCGGTTGTGATTTTGTGAG 58.326 50.000 0.00 0.00 0.00 3.51
3115 8357 0.317436 GCGCGGTTGTGATTTTGTGA 60.317 50.000 8.83 0.00 0.00 3.58
3116 8358 1.274798 GGCGCGGTTGTGATTTTGTG 61.275 55.000 8.83 0.00 0.00 3.33
3117 8359 1.007849 GGCGCGGTTGTGATTTTGT 60.008 52.632 8.83 0.00 0.00 2.83
3118 8360 0.729140 GAGGCGCGGTTGTGATTTTG 60.729 55.000 8.83 0.00 0.00 2.44
3119 8361 0.889186 AGAGGCGCGGTTGTGATTTT 60.889 50.000 8.83 0.00 0.00 1.82
3120 8362 0.889186 AAGAGGCGCGGTTGTGATTT 60.889 50.000 8.83 0.00 0.00 2.17
3121 8363 1.302511 AAGAGGCGCGGTTGTGATT 60.303 52.632 8.83 0.00 0.00 2.57
3122 8364 2.034879 CAAGAGGCGCGGTTGTGAT 61.035 57.895 8.83 0.00 0.00 3.06
3123 8365 2.664851 CAAGAGGCGCGGTTGTGA 60.665 61.111 8.83 0.00 0.00 3.58
3124 8366 4.389576 GCAAGAGGCGCGGTTGTG 62.390 66.667 8.83 4.97 0.00 3.33
3133 8375 1.335964 GGTTTTTCTTCCGCAAGAGGC 60.336 52.381 0.00 0.00 39.90 4.70
3134 8376 1.069227 CGGTTTTTCTTCCGCAAGAGG 60.069 52.381 0.00 0.00 39.90 3.69
3135 8377 2.316119 CGGTTTTTCTTCCGCAAGAG 57.684 50.000 0.00 0.00 39.90 2.85
3142 8384 2.475487 CGAGAGTCACGGTTTTTCTTCC 59.525 50.000 1.62 0.00 0.00 3.46
3143 8385 2.096860 GCGAGAGTCACGGTTTTTCTTC 60.097 50.000 11.95 0.00 0.00 2.87
3144 8386 1.865340 GCGAGAGTCACGGTTTTTCTT 59.135 47.619 11.95 0.00 0.00 2.52
3145 8387 1.499049 GCGAGAGTCACGGTTTTTCT 58.501 50.000 11.95 0.00 0.00 2.52
3146 8388 0.161024 CGCGAGAGTCACGGTTTTTC 59.839 55.000 11.95 0.00 0.00 2.29
3147 8389 2.222592 CGCGAGAGTCACGGTTTTT 58.777 52.632 11.95 0.00 0.00 1.94
3148 8390 3.932289 CGCGAGAGTCACGGTTTT 58.068 55.556 11.95 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.