AutoCloner

Multiple sequence alignment - TraesCS7B01G015600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G015600	chr7B	100.000	2882	0	0	1	2882	12951614	12954495	0.000000e+00	5323.0
1	TraesCS7B01G015600	chr7B	90.492	2356	141	27	154	2468	12719559	12717246	0.000000e+00	3033.0
2	TraesCS7B01G015600	chr7B	87.219	579	24	21	122	676	12716231	12716783	5.280000e-172	614.0
3	TraesCS7B01G015600	chr7B	91.732	254	15	4	2474	2725	12717198	12716949	5.910000e-92	348.0
4	TraesCS7B01G015600	chr7B	98.077	104	2	0	2758	2861	12716891	12716788	6.340000e-42	182.0
5	TraesCS7B01G015600	chr7D	93.569	2379	115	14	127	2468	69953990	69956367	0.000000e+00	3511.0
6	TraesCS7B01G015600	chr7D	91.548	1964	126	17	154	2100	70154174	70152234	0.000000e+00	2671.0
7	TraesCS7B01G015600	chr7D	91.395	1964	129	17	154	2100	70048132	70050072	0.000000e+00	2654.0
8	TraesCS7B01G015600	chr7D	91.660	1271	60	20	319	1577	70736792	70735556	0.000000e+00	1718.0
9	TraesCS7B01G015600	chr7D	95.918	392	11	4	124	510	70361697	70362088	5.240000e-177	630.0
10	TraesCS7B01G015600	chr7D	88.139	489	37	10	1606	2088	70735561	70735088	1.940000e-156	562.0
11	TraesCS7B01G015600	chr7D	91.339	254	16	4	2474	2725	69956415	69956664	2.750000e-90	342.0
12	TraesCS7B01G015600	chr7D	93.567	171	11	0	1275	1445	70362284	70362114	3.690000e-64	255.0
13	TraesCS7B01G015600	chr7D	83.696	184	9	10	2716	2882	69956699	69956878	1.380000e-33	154.0
14	TraesCS7B01G015600	chr7D	85.057	87	4	7	154	240	70736904	70736827	2.380000e-11	80.5
15	TraesCS7B01G015600	chr7A	90.494	526	41	8	1580	2100	76550199	76550720	0.000000e+00	686.0
16	TraesCS7B01G015600	chr7A	100.000	47	0	0	154	200	76819204	76819250	1.420000e-13	87.9
17	TraesCS7B01G015600	chr7A	89.796	49	4	1	11	59	706130007	706129960	8.620000e-06	62.1
18	TraesCS7B01G015600	chr7A	100.000	28	0	0	29	56	644528757	644528784	5.000000e-03	52.8
19	TraesCS7B01G015600	chr3B	79.577	284	56	2	1401	1683	455510465	455510747	4.870000e-48	202.0
20	TraesCS7B01G015600	chr3B	79.225	284	57	2	1404	1686	463457419	463457137	2.270000e-46	196.0
21	TraesCS7B01G015600	chr1D	79.783	277	52	4	1409	1683	198168256	198168530	6.300000e-47	198.0
22	TraesCS7B01G015600	chr5B	89.655	58	5	1	2	59	517580265	517580209	3.980000e-09	73.1
23	TraesCS7B01G015600	chr1B	95.556	45	2	0	15	59	345748213	345748257	3.980000e-09	73.1
24	TraesCS7B01G015600	chr5A	95.455	44	2	0	16	59	496604732	496604775	1.430000e-08	71.3
25	TraesCS7B01G015600	chr6A	85.714	63	9	0	15	77	596779761	596779823	1.850000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G015600	chr7B	12951614	12954495	2881	False	5323.000000	5323	100.000000	1	2882	1	chr7B.!!$F2	2881
1	TraesCS7B01G015600	chr7B	12716788	12719559	2771	True	1187.666667	3033	93.433667	154	2861	3	chr7B.!!$R1	2707
2	TraesCS7B01G015600	chr7B	12716231	12716783	552	False	614.000000	614	87.219000	122	676	1	chr7B.!!$F1	554
3	TraesCS7B01G015600	chr7D	70152234	70154174	1940	True	2671.000000	2671	91.548000	154	2100	1	chr7D.!!$R1	1946
4	TraesCS7B01G015600	chr7D	70048132	70050072	1940	False	2654.000000	2654	91.395000	154	2100	1	chr7D.!!$F1	1946
5	TraesCS7B01G015600	chr7D	69953990	69956878	2888	False	1335.666667	3511	89.534667	127	2882	3	chr7D.!!$F3	2755
6	TraesCS7B01G015600	chr7D	70735088	70736904	1816	True	786.833333	1718	88.285333	154	2088	3	chr7D.!!$R3	1934
7	TraesCS7B01G015600	chr7A	76550199	76550720	521	False	686.000000	686	90.494000	1580	2100	1	chr7A.!!$F1	520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
63	64	0.763035	TAAAATCTAGGCCCGGGAGC	59.237	55.0	29.31	10.0	0.00	4.70	F
1005	1085	0.166814	GCTCCGTGCTTGACATGAAC	59.833	55.0	0.00	0.0	37.49	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1855	1944	0.036732	ACTGCAAAGCGAGGAATCCA	59.963	50.0	0.61	0.0	0.0	3.41	R
2560	2733	0.392193	AGCCGAATGAACTCCAGCAG	60.392	55.0	0.00	0.0	0.0	4.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	3.047735	GAAAACAACAGGCCCGGG	58.952	61.111	19.09	19.09	0.00	5.73
18	19	3.220999	GAAAACAACAGGCCCGGGC	62.221	63.158	38.57	38.57	41.06	6.13
55	56	2.879026	CCTTCGGGCTTAAAATCTAGGC	59.121	50.000	0.00	0.00	36.31	3.93
59	60	1.605753	GGCTTAAAATCTAGGCCCGG	58.394	55.000	0.00	0.00	37.12	5.73
60	61	1.605753	GCTTAAAATCTAGGCCCGGG	58.394	55.000	19.09	19.09	0.00	5.73
61	62	1.142262	GCTTAAAATCTAGGCCCGGGA	59.858	52.381	29.31	1.71	0.00	5.14
62	63	2.810767	GCTTAAAATCTAGGCCCGGGAG	60.811	54.545	29.31	13.93	0.00	4.30
63	64	0.763035	TAAAATCTAGGCCCGGGAGC	59.237	55.000	29.31	10.00	0.00	4.70
64	65	1.279025	AAAATCTAGGCCCGGGAGCA	61.279	55.000	29.31	6.40	0.00	4.26
65	66	1.700042	AAATCTAGGCCCGGGAGCAG	61.700	60.000	29.31	17.07	0.00	4.24
80	81	4.122149	CAGCATGGGGCCGGGTAA	62.122	66.667	2.18	0.00	46.50	2.85
81	82	4.123545	AGCATGGGGCCGGGTAAC	62.124	66.667	2.18	0.00	46.50	2.50
113	114	7.833285	AAAAGGACTAGTTTGGATTAAAGCA	57.167	32.000	0.00	0.00	0.00	3.91
114	115	7.833285	AAAGGACTAGTTTGGATTAAAGCAA	57.167	32.000	0.00	0.00	0.00	3.91
115	116	7.833285	AAGGACTAGTTTGGATTAAAGCAAA	57.167	32.000	0.00	0.00	0.00	3.68
116	117	7.833285	AGGACTAGTTTGGATTAAAGCAAAA	57.167	32.000	0.00	0.00	0.00	2.44
117	118	8.245195	AGGACTAGTTTGGATTAAAGCAAAAA	57.755	30.769	0.00	0.00	0.00	1.94
205	211	4.400251	CCTCTCACCCCGACCCCT	62.400	72.222	0.00	0.00	0.00	4.79
289	323	3.104602	GATCCGCGACGTCGAAGGA	62.105	63.158	38.35	38.35	45.97	3.36
372	429	4.011517	TCCAAGTTCCGGCCGGTC	62.012	66.667	41.57	32.72	36.47	4.79
898	978	2.824489	TGAACAAACGCACCGCCA	60.824	55.556	0.00	0.00	0.00	5.69
966	1046	2.656069	CCTCGTCCCCGTGTTCCAT	61.656	63.158	0.00	0.00	35.01	3.41
990	1070	2.579738	GTCAGGAACCGGAGCTCC	59.420	66.667	23.79	23.79	0.00	4.70
1005	1085	0.166814	GCTCCGTGCTTGACATGAAC	59.833	55.000	0.00	0.00	37.49	3.18
1065	1151	2.750237	GCATGGTTCCCGTGGACC	60.750	66.667	4.74	0.00	40.61	4.46
1200	1286	3.459227	TGGGTGGCTCAATGAAGATCATA	59.541	43.478	0.00	0.00	35.76	2.15
1221	1307	1.043673	AGCTGTACCCGAGATCACCC	61.044	60.000	0.00	0.00	0.00	4.61
1224	1310	0.974010	TGTACCCGAGATCACCCCAC	60.974	60.000	0.00	0.00	0.00	4.61
1336	1422	3.243234	CGTCCACCATTTAACTGCACAAA	60.243	43.478	0.00	0.00	0.00	2.83
1395	1481	2.002586	CTCTTTGCGTTGGACATCGAT	58.997	47.619	6.94	0.00	0.00	3.59
1397	1483	1.731709	CTTTGCGTTGGACATCGATCA	59.268	47.619	0.00	0.00	0.00	2.92
1460	1546	0.613260	TTCCTCAACAGGGATCGGTG	59.387	55.000	0.00	0.00	40.80	4.94
1473	1559	0.670546	ATCGGTGCCTGTCTGTTTCG	60.671	55.000	0.00	0.00	0.00	3.46
1548	1634	2.253758	CCCTGTTGTGGTGCACTCG	61.254	63.158	17.98	0.00	35.11	4.18
1571	1657	1.722034	AGGACAGGTTTCTCTGAGCA	58.278	50.000	0.00	0.00	38.11	4.26
1688	1774	4.202202	CCATCCTCATGAGTGGTAAGTCTC	60.202	50.000	21.11	0.00	30.57	3.36
1760	1849	5.467668	TGACTGTCTTCTCTTCCCCTATA	57.532	43.478	9.51	0.00	0.00	1.31
1855	1944	7.395489	ACATCAAGGCAAAAGATTCTGAACTAT	59.605	33.333	0.00	0.00	0.00	2.12
1867	1956	3.300388	TCTGAACTATGGATTCCTCGCT	58.700	45.455	3.95	0.00	0.00	4.93
2199	2305	5.517054	CGTCCTCATTAAGACAGTAAAGCTC	59.483	44.000	0.00	0.00	33.08	4.09
2222	2328	3.739209	CGAAGCTCATTCATCACCTGCTA	60.739	47.826	0.00	0.00	37.83	3.49
2233	2339	1.203063	TCACCTGCTAGTCACTGAGGT	60.203	52.381	0.13	0.13	37.53	3.85
2237	2343	0.831711	TGCTAGTCACTGAGGTGCCA	60.832	55.000	0.00	0.00	42.72	4.92
2238	2344	0.539051	GCTAGTCACTGAGGTGCCAT	59.461	55.000	0.00	0.00	42.72	4.40
2254	2361	0.250467	CCATCAGGGTATTGGGAGCG	60.250	60.000	0.00	0.00	0.00	5.03
2279	2386	0.174617	GAAGTGGGAGAGAGCCTTCG	59.825	60.000	0.00	0.00	0.00	3.79
2338	2445	2.555227	CCTTGTGGCATGGAGTAAGGTT	60.555	50.000	0.00	0.00	31.33	3.50
2382	2510	3.741476	CAGGGGCTTGTGCTTCGC	61.741	66.667	0.00	0.00	39.59	4.70
2400	2529	2.351244	CGTGAGCTGGGAGTGGCTA	61.351	63.158	0.00	0.00	39.05	3.93
2401	2530	1.680522	CGTGAGCTGGGAGTGGCTAT	61.681	60.000	0.00	0.00	39.05	2.97
2468	2597	4.847198	TGAAGATATTTCTGCAAGGCTCA	58.153	39.130	0.00	0.00	34.37	4.26
2469	2598	5.255687	TGAAGATATTTCTGCAAGGCTCAA	58.744	37.500	0.00	0.00	34.37	3.02
2470	2599	5.889853	TGAAGATATTTCTGCAAGGCTCAAT	59.110	36.000	0.00	0.00	34.37	2.57
2471	2600	5.769484	AGATATTTCTGCAAGGCTCAATG	57.231	39.130	0.00	0.00	0.00	2.82
2472	2601	4.583489	AGATATTTCTGCAAGGCTCAATGG	59.417	41.667	0.00	0.00	0.00	3.16
2474	2603	1.999648	TTCTGCAAGGCTCAATGGTT	58.000	45.000	0.00	0.00	0.00	3.67
2476	2605	3.370840	TCTGCAAGGCTCAATGGTTAT	57.629	42.857	0.00	0.00	0.00	1.89
2478	2607	4.088634	TCTGCAAGGCTCAATGGTTATTT	58.911	39.130	0.00	0.00	0.00	1.40
2479	2608	4.527816	TCTGCAAGGCTCAATGGTTATTTT	59.472	37.500	0.00	0.00	0.00	1.82
2481	2610	4.040217	TGCAAGGCTCAATGGTTATTTTGT	59.960	37.500	0.00	0.00	0.00	2.83
2490	2663	7.221452	GCTCAATGGTTATTTTGTAGATTGCTG	59.779	37.037	0.00	0.00	0.00	4.41
2519	2692	5.437289	TGGTTATTCTGTTGCTGAGTTTG	57.563	39.130	0.00	0.00	0.00	2.93
2520	2693	4.887071	TGGTTATTCTGTTGCTGAGTTTGT	59.113	37.500	0.00	0.00	0.00	2.83
2523	2696	2.042686	TCTGTTGCTGAGTTTGTGCT	57.957	45.000	0.00	0.00	0.00	4.40
2548	2721	2.832129	AGTTCTGGAGTTCATTCGGCTA	59.168	45.455	0.00	0.00	0.00	3.93
2560	2733	4.537433	CGGCTAGCCCTGGTCTGC	62.537	72.222	28.09	0.00	0.00	4.26
2589	2762	0.179100	TCATTCGGCTAGCTCTGTGC	60.179	55.000	15.72	0.00	43.29	4.57
2612	2785	6.095947	CACCGTTTGCTTACTATCTTCTTC	57.904	41.667	0.00	0.00	0.00	2.87
2628	2801	4.662961	TCACCGGTGCTGACTGCG	62.663	66.667	30.25	2.67	46.63	5.18
2671	2844	5.221126	CCTTAACCTGCAAGATAATTGCCTC	60.221	44.000	9.86	0.00	44.32	4.70
2744	2961	9.455847	GATCAGCATTTATGGTCTTATTTTGAC	57.544	33.333	0.00	0.00	36.17	3.18
2774	3003	4.703897	ACCTGTATATGATTCAACCACCG	58.296	43.478	0.00	0.00	0.00	4.94
2873	3107	0.940833	TTCACTTTTGCGTCGATGCA	59.059	45.000	27.87	27.87	44.61	3.96

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	3.047735	CCCGGGCCTGTTGTTTTC	58.952	61.111	8.08	0.00	0.00	2.29
35	36	2.879026	GGCCTAGATTTTAAGCCCGAAG	59.121	50.000	0.00	0.00	37.66	3.79
36	37	2.927028	GGCCTAGATTTTAAGCCCGAA	58.073	47.619	0.00	0.00	37.66	4.30
37	38	2.632987	GGCCTAGATTTTAAGCCCGA	57.367	50.000	0.00	0.00	37.66	5.14
40	41	1.605753	CCGGGCCTAGATTTTAAGCC	58.394	55.000	0.84	0.00	43.09	4.35
41	42	1.142262	TCCCGGGCCTAGATTTTAAGC	59.858	52.381	18.49	0.00	0.00	3.09
42	43	2.810767	GCTCCCGGGCCTAGATTTTAAG	60.811	54.545	18.49	4.04	0.00	1.85
43	44	1.142262	GCTCCCGGGCCTAGATTTTAA	59.858	52.381	18.49	0.00	0.00	1.52
44	45	0.763035	GCTCCCGGGCCTAGATTTTA	59.237	55.000	18.49	0.00	0.00	1.52
45	46	1.279025	TGCTCCCGGGCCTAGATTTT	61.279	55.000	18.49	0.00	0.00	1.82
46	47	1.692749	TGCTCCCGGGCCTAGATTT	60.693	57.895	18.49	0.00	0.00	2.17
47	48	2.040884	TGCTCCCGGGCCTAGATT	60.041	61.111	18.49	0.00	0.00	2.40
48	49	2.525381	CTGCTCCCGGGCCTAGAT	60.525	66.667	18.49	0.00	0.00	1.98
63	64	4.122149	TTACCCGGCCCCATGCTG	62.122	66.667	0.00	0.00	46.56	4.41
64	65	4.123545	GTTACCCGGCCCCATGCT	62.124	66.667	0.00	0.00	40.92	3.79
66	67	4.516258	GGGTTACCCGGCCCCATG	62.516	72.222	3.99	0.00	38.99	3.66
88	89	8.245195	TGCTTTAATCCAAACTAGTCCTTTTT	57.755	30.769	0.00	0.00	0.00	1.94
89	90	7.833285	TGCTTTAATCCAAACTAGTCCTTTT	57.167	32.000	0.00	0.00	0.00	2.27
90	91	7.833285	TTGCTTTAATCCAAACTAGTCCTTT	57.167	32.000	0.00	0.00	0.00	3.11
91	92	7.833285	TTTGCTTTAATCCAAACTAGTCCTT	57.167	32.000	0.00	0.00	0.00	3.36
92	93	7.833285	TTTTGCTTTAATCCAAACTAGTCCT	57.167	32.000	0.00	0.00	31.30	3.85
125	126	9.154632	AGTGGGATAAGAAACACCTTTATTTTT	57.845	29.630	0.00	0.00	34.50	1.94
126	127	8.585018	CAGTGGGATAAGAAACACCTTTATTTT	58.415	33.333	0.00	0.00	34.50	1.82
127	128	7.947890	TCAGTGGGATAAGAAACACCTTTATTT	59.052	33.333	0.00	0.00	34.50	1.40
128	129	7.466804	TCAGTGGGATAAGAAACACCTTTATT	58.533	34.615	0.00	0.00	34.50	1.40
129	130	7.027874	TCAGTGGGATAAGAAACACCTTTAT	57.972	36.000	0.00	0.00	34.50	1.40
130	131	6.043938	ACTCAGTGGGATAAGAAACACCTTTA	59.956	38.462	0.00	0.00	34.50	1.85
136	137	4.974645	ACACTCAGTGGGATAAGAAACA	57.025	40.909	10.28	0.00	37.94	2.83
216	222	1.695242	TGAGGAAGAAACTTACGGCCA	59.305	47.619	2.24	0.00	0.00	5.36
289	323	2.439880	GGAAATCCGAGGGAGGAAGAAT	59.560	50.000	0.00	0.00	44.50	2.40
382	439	5.632118	TCCATCTATATCTATAGGCCGTCC	58.368	45.833	0.00	0.00	37.00	4.79
986	1066	0.166814	GTTCATGTCAAGCACGGAGC	59.833	55.000	0.00	0.00	46.19	4.70
990	1070	1.154413	GGCGTTCATGTCAAGCACG	60.154	57.895	0.00	0.00	0.00	5.34
1028	1114	2.350895	CCACGGCAATGGAGGTCA	59.649	61.111	0.00	0.00	43.02	4.02
1190	1276	3.068165	CGGGTACAGCTGTATGATCTTCA	59.932	47.826	28.37	2.71	32.54	3.02
1200	1286	0.818296	GTGATCTCGGGTACAGCTGT	59.182	55.000	25.12	25.12	0.00	4.40
1221	1307	1.303888	ATGAGCAAGCACAGGGTGG	60.304	57.895	0.00	0.00	33.64	4.61
1224	1310	0.524862	GAACATGAGCAAGCACAGGG	59.475	55.000	0.00	1.66	0.00	4.45
1259	1345	2.752030	AGTAGCTGCATAGGTCCAGAA	58.248	47.619	4.12	0.00	35.90	3.02
1262	1348	1.762957	GGAAGTAGCTGCATAGGTCCA	59.237	52.381	4.12	0.00	35.90	4.02
1265	1351	2.752030	TGAGGAAGTAGCTGCATAGGT	58.248	47.619	4.12	0.00	38.41	3.08
1395	1481	1.607801	CTGGGATCAGCTCACCGTGA	61.608	60.000	0.29	0.29	33.86	4.35
1397	1483	1.610673	ACTGGGATCAGCTCACCGT	60.611	57.895	0.00	0.00	44.59	4.83
1464	1550	1.671379	GTCCCTGGCCGAAACAGAC	60.671	63.158	0.00	0.00	38.20	3.51
1494	1580	3.755378	AGAAGTAAATGGAGTTGCTGCTG	59.245	43.478	0.00	0.00	28.70	4.41
1548	1634	3.617775	GCTCAGAGAAACCTGTCCTTACC	60.618	52.174	0.00	0.00	35.71	2.85
1571	1657	0.325933	TTGGCATGACACTGCTAGCT	59.674	50.000	17.23	0.00	41.95	3.32
1722	1809	6.673106	AGACAGTCATAATGTAGTATCGCAG	58.327	40.000	2.66	0.00	0.00	5.18
1760	1849	5.656416	TGAAACATGAGTCCTTTTGTCCTTT	59.344	36.000	0.00	0.00	0.00	3.11
1855	1944	0.036732	ACTGCAAAGCGAGGAATCCA	59.963	50.000	0.61	0.00	0.00	3.41
1867	1956	3.629855	TCTTCGGATCAACAAACTGCAAA	59.370	39.130	0.00	0.00	0.00	3.68
2176	2281	5.813157	GGAGCTTTACTGTCTTAATGAGGAC	59.187	44.000	0.00	0.00	0.00	3.85
2180	2285	5.654603	TCGGAGCTTTACTGTCTTAATGA	57.345	39.130	0.00	0.00	0.00	2.57
2199	2305	1.938577	CAGGTGATGAATGAGCTTCGG	59.061	52.381	0.00	0.00	36.60	4.30
2233	2339	0.846015	CTCCCAATACCCTGATGGCA	59.154	55.000	0.00	0.00	37.83	4.92
2237	2343	0.694444	ACCGCTCCCAATACCCTGAT	60.694	55.000	0.00	0.00	0.00	2.90
2238	2344	1.306654	ACCGCTCCCAATACCCTGA	60.307	57.895	0.00	0.00	0.00	3.86
2254	2361	1.190643	CTCTCTCCCACTTCTCCACC	58.809	60.000	0.00	0.00	0.00	4.61
2279	2386	2.489938	TCATCAGTACCTGCCCAAAC	57.510	50.000	0.00	0.00	0.00	2.93
2326	2433	2.375174	TGGCTGAACAACCTTACTCCAT	59.625	45.455	0.00	0.00	0.00	3.41
2338	2445	5.221165	GCTTTAAGTTTAGGTTGGCTGAACA	60.221	40.000	0.00	0.00	36.12	3.18
2382	2510	1.680522	ATAGCCACTCCCAGCTCACG	61.681	60.000	0.00	0.00	40.56	4.35
2400	2529	4.142038	GTTTTCCAGGGTCAGTACAACAT	58.858	43.478	0.00	0.00	0.00	2.71
2401	2530	3.547746	GTTTTCCAGGGTCAGTACAACA	58.452	45.455	0.00	0.00	0.00	3.33
2442	2571	7.557358	TGAGCCTTGCAGAAATATCTTCAAATA	59.443	33.333	0.00	0.00	38.15	1.40
2448	2577	5.068723	CCATTGAGCCTTGCAGAAATATCTT	59.931	40.000	0.00	0.00	32.03	2.40
2468	2597	7.716799	TCCAGCAATCTACAAAATAACCATT	57.283	32.000	0.00	0.00	0.00	3.16
2469	2598	7.560991	TGATCCAGCAATCTACAAAATAACCAT	59.439	33.333	0.00	0.00	0.00	3.55
2470	2599	6.889177	TGATCCAGCAATCTACAAAATAACCA	59.111	34.615	0.00	0.00	0.00	3.67
2471	2600	7.333528	TGATCCAGCAATCTACAAAATAACC	57.666	36.000	0.00	0.00	0.00	2.85
2472	2601	9.241317	CATTGATCCAGCAATCTACAAAATAAC	57.759	33.333	0.00	0.00	36.39	1.89
2474	2603	7.560991	ACCATTGATCCAGCAATCTACAAAATA	59.439	33.333	0.00	0.00	36.39	1.40
2476	2605	5.716228	ACCATTGATCCAGCAATCTACAAAA	59.284	36.000	0.00	0.00	36.39	2.44
2478	2607	4.858850	ACCATTGATCCAGCAATCTACAA	58.141	39.130	0.00	0.00	36.39	2.41
2479	2608	4.508551	ACCATTGATCCAGCAATCTACA	57.491	40.909	0.00	0.00	36.39	2.74
2481	2610	7.446319	CAGAATAACCATTGATCCAGCAATCTA	59.554	37.037	0.00	0.00	36.39	1.98
2490	2663	5.357878	TCAGCAACAGAATAACCATTGATCC	59.642	40.000	0.00	0.00	0.00	3.36
2519	2692	2.289072	TGAACTCCAGAACTAGCAGCAC	60.289	50.000	0.00	0.00	0.00	4.40
2520	2693	1.970640	TGAACTCCAGAACTAGCAGCA	59.029	47.619	0.00	0.00	0.00	4.41
2523	2696	3.368427	CCGAATGAACTCCAGAACTAGCA	60.368	47.826	0.00	0.00	0.00	3.49
2548	2721	4.031129	CAGCAGCAGACCAGGGCT	62.031	66.667	0.00	0.00	42.06	5.19
2560	2733	0.392193	AGCCGAATGAACTCCAGCAG	60.392	55.000	0.00	0.00	0.00	4.24
2589	2762	5.637810	TGAAGAAGATAGTAAGCAAACGGTG	59.362	40.000	0.00	0.00	0.00	4.94
2610	2783	2.280797	GCAGTCAGCACCGGTGAA	60.281	61.111	38.30	19.13	41.75	3.18
2611	2784	4.662961	CGCAGTCAGCACCGGTGA	62.663	66.667	38.30	15.21	46.13	4.02
2671	2844	4.673441	AGCCGATATTGTATAAGCTAGCG	58.327	43.478	9.55	0.00	0.00	4.26
2744	2961	9.498307	GGTTGAATCATATACAGGTTAAAAACG	57.502	33.333	0.00	0.00	0.00	3.60
2753	2970	3.498397	GCGGTGGTTGAATCATATACAGG	59.502	47.826	0.00	0.00	0.00	4.00
2774	3003	5.409214	ACATTTTTATTTGCACTCACCATGC	59.591	36.000	0.00	0.00	43.68	4.06
2818	3052	6.094603	ACCAATGATCAAGAGTAAATCTGTGC	59.905	38.462	0.00	0.00	38.67	4.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.