Multiple sequence alignment - TraesCS7B01G014800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G014800 chr7B 100.000 3561 0 0 1 3561 11959982 11963542 0.000000e+00 6577.0
1 TraesCS7B01G014800 chr7A 88.770 1220 78 24 2251 3458 76123973 76125145 0.000000e+00 1439.0
2 TraesCS7B01G014800 chr7A 86.721 866 86 17 1362 2208 76123050 76123905 0.000000e+00 935.0
3 TraesCS7B01G014800 chr7A 86.351 740 75 18 625 1353 76122131 76122855 0.000000e+00 784.0
4 TraesCS7B01G014800 chr7A 86.847 555 58 9 4 552 76121569 76122114 1.090000e-169 606.0
5 TraesCS7B01G014800 chr7A 100.000 30 0 0 3532 3561 136467852 136467881 4.970000e-04 56.5
6 TraesCS7B01G014800 chr7A 100.000 30 0 0 3532 3561 486706670 486706699 4.970000e-04 56.5
7 TraesCS7B01G014800 chr7A 100.000 30 0 0 3532 3561 576148926 576148897 4.970000e-04 56.5
8 TraesCS7B01G014800 chr7D 87.489 1183 125 11 625 1798 69593877 69595045 0.000000e+00 1343.0
9 TraesCS7B01G014800 chr7D 85.149 1239 117 44 1899 3103 69595848 69597053 0.000000e+00 1206.0
10 TraesCS7B01G014800 chr7D 84.335 466 36 16 7 467 69593360 69593793 4.250000e-114 422.0
11 TraesCS7B01G014800 chr7D 86.792 265 25 7 1646 1900 69595491 69595755 1.620000e-73 287.0
12 TraesCS7B01G014800 chr6A 100.000 30 0 0 3532 3561 551349274 551349245 4.970000e-04 56.5
13 TraesCS7B01G014800 chr6A 94.444 36 0 2 3526 3561 562386008 562386041 2.000000e-03 54.7
14 TraesCS7B01G014800 chr5A 100.000 30 0 0 3532 3561 63132193 63132164 4.970000e-04 56.5
15 TraesCS7B01G014800 chr5A 100.000 30 0 0 3532 3561 234259371 234259342 4.970000e-04 56.5
16 TraesCS7B01G014800 chr1A 100.000 30 0 0 3532 3561 56447932 56447903 4.970000e-04 56.5
17 TraesCS7B01G014800 chr3D 96.970 33 0 1 3529 3561 451896610 451896579 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G014800 chr7B 11959982 11963542 3560 False 6577.0 6577 100.00000 1 3561 1 chr7B.!!$F1 3560
1 TraesCS7B01G014800 chr7A 76121569 76125145 3576 False 941.0 1439 87.17225 4 3458 4 chr7A.!!$F3 3454
2 TraesCS7B01G014800 chr7D 69593360 69597053 3693 False 814.5 1343 85.94125 7 3103 4 chr7D.!!$F1 3096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 504 0.036483 TGCCAGCGCTAGTTGATTGA 60.036 50.0 10.99 0.0 35.36 2.57 F
1565 1789 0.458889 CAGGTTGCAAATGGGCATCG 60.459 55.0 0.00 0.0 44.48 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 2542 0.035317 ACCAGCAACGAAGCAGATGA 59.965 50.0 6.62 0.0 36.85 2.92 R
2810 3772 0.179018 GCTTTGGCCAGTATCCCGAT 60.179 55.0 5.11 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 94 1.912220 CGGTATCTCCTGGGCCAAA 59.088 57.895 8.04 0.00 0.00 3.28
111 122 1.238625 CCTCTCCTCTATCGGCGTCC 61.239 65.000 6.85 0.00 0.00 4.79
144 155 0.182775 CGGGCCTAAATTACTGGGCT 59.817 55.000 0.84 0.00 44.54 5.19
161 176 3.551496 CTGCGGGTGCCCTTTCTGA 62.551 63.158 5.64 0.00 41.78 3.27
162 177 2.044946 GCGGGTGCCCTTTCTGAT 60.045 61.111 5.64 0.00 33.98 2.90
163 178 2.409870 GCGGGTGCCCTTTCTGATG 61.410 63.158 5.64 0.00 33.98 3.07
164 179 1.299648 CGGGTGCCCTTTCTGATGA 59.700 57.895 5.64 0.00 0.00 2.92
165 180 0.322456 CGGGTGCCCTTTCTGATGAA 60.322 55.000 5.64 0.00 0.00 2.57
166 181 1.683011 CGGGTGCCCTTTCTGATGAAT 60.683 52.381 5.64 0.00 31.56 2.57
167 182 1.753073 GGGTGCCCTTTCTGATGAATG 59.247 52.381 0.00 0.00 31.56 2.67
168 183 2.450476 GGTGCCCTTTCTGATGAATGT 58.550 47.619 0.00 0.00 31.56 2.71
169 184 2.424956 GGTGCCCTTTCTGATGAATGTC 59.575 50.000 0.00 0.00 31.56 3.06
170 185 3.350833 GTGCCCTTTCTGATGAATGTCT 58.649 45.455 0.00 0.00 31.56 3.41
171 186 3.128242 GTGCCCTTTCTGATGAATGTCTG 59.872 47.826 0.00 0.00 31.56 3.51
172 187 3.245016 TGCCCTTTCTGATGAATGTCTGT 60.245 43.478 0.00 0.00 31.56 3.41
173 188 3.376546 GCCCTTTCTGATGAATGTCTGTC 59.623 47.826 0.00 0.00 31.56 3.51
174 189 4.582869 CCCTTTCTGATGAATGTCTGTCA 58.417 43.478 0.00 0.00 31.56 3.58
175 190 4.634883 CCCTTTCTGATGAATGTCTGTCAG 59.365 45.833 0.00 0.00 39.47 3.51
230 246 1.202580 CGTGATGTTCCTCCCCTGATC 60.203 57.143 0.00 0.00 0.00 2.92
238 255 3.632049 TCCCCTGATCCCCCACCA 61.632 66.667 0.00 0.00 0.00 4.17
328 345 2.202610 CGCAATCTCCGTCGAGCA 60.203 61.111 0.00 0.00 35.94 4.26
385 402 2.640302 GGCTGCTCTGACGGTCTCA 61.640 63.158 9.88 1.92 0.00 3.27
459 476 1.990563 CGTCGGTCCATTCAGTTGTAC 59.009 52.381 0.00 0.00 0.00 2.90
469 486 7.251994 GTCCATTCAGTTGTACTACTACTCTG 58.748 42.308 9.68 5.80 32.07 3.35
471 488 5.640189 TTCAGTTGTACTACTACTCTGCC 57.360 43.478 9.68 0.00 32.07 4.85
474 491 3.444388 AGTTGTACTACTACTCTGCCAGC 59.556 47.826 8.27 0.00 28.27 4.85
479 496 1.265635 CTACTACTCTGCCAGCGCTAG 59.734 57.143 10.99 3.03 35.36 3.42
483 500 1.216444 CTCTGCCAGCGCTAGTTGA 59.784 57.895 10.99 5.87 35.36 3.18
486 503 0.376152 CTGCCAGCGCTAGTTGATTG 59.624 55.000 10.99 0.00 35.36 2.67
487 504 0.036483 TGCCAGCGCTAGTTGATTGA 60.036 50.000 10.99 0.00 35.36 2.57
496 513 5.822519 AGCGCTAGTTGATTGATTCCAAATA 59.177 36.000 8.99 0.00 35.67 1.40
500 517 7.420800 GCTAGTTGATTGATTCCAAATACCAG 58.579 38.462 0.00 0.00 35.67 4.00
506 523 8.279970 TGATTGATTCCAAATACCAGTACTTG 57.720 34.615 0.00 0.00 35.67 3.16
508 525 7.681939 TTGATTCCAAATACCAGTACTTGTC 57.318 36.000 2.30 0.00 0.00 3.18
518 535 3.882888 ACCAGTACTTGTCAATTGTGTGG 59.117 43.478 5.13 4.84 0.00 4.17
519 536 3.304659 CCAGTACTTGTCAATTGTGTGGC 60.305 47.826 5.13 0.45 0.00 5.01
522 539 4.755123 AGTACTTGTCAATTGTGTGGCTAC 59.245 41.667 5.13 0.00 0.00 3.58
536 553 1.350684 TGGCTACCTGTTGCTCAATGA 59.649 47.619 3.88 0.00 0.00 2.57
539 556 3.065925 GGCTACCTGTTGCTCAATGATTC 59.934 47.826 3.88 0.00 0.00 2.52
555 572 9.125906 CTCAATGATTCATTTGAACTTGAACTC 57.874 33.333 9.19 1.04 36.80 3.01
557 574 6.859420 TGATTCATTTGAACTTGAACTCGA 57.141 33.333 0.00 0.00 36.80 4.04
559 576 7.132213 TGATTCATTTGAACTTGAACTCGAAC 58.868 34.615 0.00 0.00 36.80 3.95
563 580 4.875544 TTGAACTTGAACTCGAACTTGG 57.124 40.909 0.00 0.00 0.00 3.61
564 581 4.131649 TGAACTTGAACTCGAACTTGGA 57.868 40.909 0.00 0.00 0.00 3.53
566 583 4.331717 TGAACTTGAACTCGAACTTGGAAC 59.668 41.667 0.00 0.00 0.00 3.62
567 584 4.138487 ACTTGAACTCGAACTTGGAACT 57.862 40.909 0.00 0.00 0.00 3.01
568 585 3.871594 ACTTGAACTCGAACTTGGAACTG 59.128 43.478 0.00 0.00 0.00 3.16
571 588 5.013568 TGAACTCGAACTTGGAACTGTTA 57.986 39.130 0.00 0.00 0.00 2.41
572 589 5.047847 TGAACTCGAACTTGGAACTGTTAG 58.952 41.667 0.00 0.00 0.00 2.34
573 590 3.391049 ACTCGAACTTGGAACTGTTAGC 58.609 45.455 0.00 0.00 0.00 3.09
574 591 2.737252 CTCGAACTTGGAACTGTTAGCC 59.263 50.000 0.00 0.00 0.00 3.93
575 592 2.367567 TCGAACTTGGAACTGTTAGCCT 59.632 45.455 0.00 0.00 0.00 4.58
576 593 2.737252 CGAACTTGGAACTGTTAGCCTC 59.263 50.000 0.00 0.00 0.00 4.70
577 594 2.861147 ACTTGGAACTGTTAGCCTCC 57.139 50.000 0.00 0.00 0.00 4.30
578 595 1.002087 ACTTGGAACTGTTAGCCTCCG 59.998 52.381 0.00 0.00 0.00 4.63
579 596 1.002087 CTTGGAACTGTTAGCCTCCGT 59.998 52.381 0.00 0.00 0.00 4.69
580 597 1.053424 TGGAACTGTTAGCCTCCGTT 58.947 50.000 0.00 0.00 0.00 4.44
581 598 1.270625 TGGAACTGTTAGCCTCCGTTG 60.271 52.381 0.00 0.00 0.00 4.10
582 599 1.439679 GAACTGTTAGCCTCCGTTGG 58.560 55.000 0.00 0.00 0.00 3.77
583 600 0.763035 AACTGTTAGCCTCCGTTGGT 59.237 50.000 0.00 0.00 0.00 3.67
584 601 0.763035 ACTGTTAGCCTCCGTTGGTT 59.237 50.000 0.00 0.00 0.00 3.67
585 602 1.270678 ACTGTTAGCCTCCGTTGGTTC 60.271 52.381 0.00 0.00 0.00 3.62
586 603 0.759959 TGTTAGCCTCCGTTGGTTCA 59.240 50.000 0.00 0.00 0.00 3.18
587 604 1.349688 TGTTAGCCTCCGTTGGTTCAT 59.650 47.619 0.00 0.00 0.00 2.57
588 605 2.568062 TGTTAGCCTCCGTTGGTTCATA 59.432 45.455 0.00 0.00 0.00 2.15
589 606 3.195661 GTTAGCCTCCGTTGGTTCATAG 58.804 50.000 0.00 0.00 0.00 2.23
590 607 0.541863 AGCCTCCGTTGGTTCATAGG 59.458 55.000 0.00 0.00 0.00 2.57
591 608 0.463833 GCCTCCGTTGGTTCATAGGG 60.464 60.000 0.00 0.00 0.00 3.53
592 609 0.909623 CCTCCGTTGGTTCATAGGGT 59.090 55.000 0.00 0.00 0.00 4.34
593 610 2.112998 CCTCCGTTGGTTCATAGGGTA 58.887 52.381 0.00 0.00 0.00 3.69
594 611 2.102588 CCTCCGTTGGTTCATAGGGTAG 59.897 54.545 0.00 0.00 0.00 3.18
595 612 3.028850 CTCCGTTGGTTCATAGGGTAGA 58.971 50.000 0.00 0.00 0.00 2.59
596 613 3.443052 TCCGTTGGTTCATAGGGTAGAA 58.557 45.455 0.00 0.00 0.00 2.10
597 614 3.839490 TCCGTTGGTTCATAGGGTAGAAA 59.161 43.478 0.00 0.00 0.00 2.52
598 615 4.286549 TCCGTTGGTTCATAGGGTAGAAAA 59.713 41.667 0.00 0.00 0.00 2.29
599 616 5.005094 CCGTTGGTTCATAGGGTAGAAAAA 58.995 41.667 0.00 0.00 0.00 1.94
635 652 9.467796 AATAGGGTAGAAAATTTTCAGAGGAAG 57.532 33.333 28.00 0.00 39.61 3.46
639 656 5.339423 AGAAAATTTTCAGAGGAAGGGGA 57.661 39.130 28.00 0.00 39.61 4.81
657 675 7.256511 GGAAGGGGAAGGTTTTCATTTTATCAA 60.257 37.037 0.00 0.00 34.90 2.57
689 707 4.795469 AGCAATGATGTGATATGGGTCAA 58.205 39.130 0.00 0.00 0.00 3.18
714 732 2.986479 GTTGAATGAATTTGCGGGACAC 59.014 45.455 0.00 0.00 0.00 3.67
722 740 4.221703 TGAATTTGCGGGACACCATTTTAT 59.778 37.500 0.00 0.00 36.13 1.40
732 754 7.190871 CGGGACACCATTTTATACACAAATAC 58.809 38.462 0.00 0.00 36.13 1.89
734 756 9.398538 GGGACACCATTTTATACACAAATACTA 57.601 33.333 0.00 0.00 36.50 1.82
776 798 4.067896 CTGCACTGCTATTATTACCCTGG 58.932 47.826 1.98 0.00 0.00 4.45
779 801 5.131308 TGCACTGCTATTATTACCCTGGTAA 59.869 40.000 11.01 11.01 43.56 2.85
808 830 7.862372 TCACAGCAAGAAATTTCTTATTGTGTC 59.138 33.333 37.87 23.90 46.79 3.67
830 852 4.704540 TCAAGTCTTCTCCTTGCAACAAAA 59.295 37.500 0.00 0.00 39.30 2.44
835 857 5.971792 GTCTTCTCCTTGCAACAAAAACTAC 59.028 40.000 0.00 0.00 0.00 2.73
843 865 2.533942 GCAACAAAAACTACCAAGCACG 59.466 45.455 0.00 0.00 0.00 5.34
844 866 2.485266 ACAAAAACTACCAAGCACGC 57.515 45.000 0.00 0.00 0.00 5.34
845 867 1.746220 ACAAAAACTACCAAGCACGCA 59.254 42.857 0.00 0.00 0.00 5.24
848 870 1.226746 AAACTACCAAGCACGCACTC 58.773 50.000 0.00 0.00 0.00 3.51
854 876 1.082300 CAAGCACGCACTCTTGCTG 60.082 57.895 0.00 0.00 45.57 4.41
856 878 1.097547 AAGCACGCACTCTTGCTGTT 61.098 50.000 0.00 0.00 45.57 3.16
873 895 4.947388 TGCTGTTCAAGATAATTACCACCC 59.053 41.667 0.00 0.00 0.00 4.61
915 939 1.000019 TCGCTAGCCACTGGTAGGT 60.000 57.895 9.66 0.00 41.79 3.08
917 941 1.108776 CGCTAGCCACTGGTAGGTTA 58.891 55.000 9.66 0.00 41.79 2.85
1041 1065 2.182842 GGTGATCCAGATGCACCGC 61.183 63.158 11.14 0.00 42.20 5.68
1158 1182 1.812922 GCTAGCGCTCATGCACACT 60.813 57.895 16.34 0.00 39.64 3.55
1171 1195 2.412870 TGCACACTAATGACAGGTTCG 58.587 47.619 0.00 0.00 0.00 3.95
1185 1209 4.704833 TTCGGAGCTGCACTGCCC 62.705 66.667 5.91 0.00 31.88 5.36
1203 1227 2.957006 GCCCTCTCCTCGTCAATTACTA 59.043 50.000 0.00 0.00 0.00 1.82
1213 1237 8.613060 TCCTCGTCAATTACTATAGTTCGTAT 57.387 34.615 11.40 0.00 0.00 3.06
1237 1261 2.492088 GTTTGAAGGGTTAGGTGGATGC 59.508 50.000 0.00 0.00 0.00 3.91
1247 1271 2.359850 GTGGATGCGGCTGTGGAA 60.360 61.111 0.00 0.00 0.00 3.53
1291 1322 1.749033 CCGAGGGGATCCTTGCTAC 59.251 63.158 12.58 0.00 45.05 3.58
1302 1333 3.005205 CTTGCTACGGCATGGCATA 57.995 52.632 20.37 7.57 45.37 3.14
1310 1341 1.134753 ACGGCATGGCATAAATGTGTG 59.865 47.619 20.37 0.96 0.00 3.82
1353 1570 4.155644 AGCATTTCTTTTAGTCAGCTGCTC 59.844 41.667 9.47 4.66 32.31 4.26
1359 1576 5.821204 TCTTTTAGTCAGCTGCTCAAAAAC 58.179 37.500 9.47 0.00 0.00 2.43
1369 1586 3.615496 GCTGCTCAAAAACTTATGGCATG 59.385 43.478 10.98 0.00 0.00 4.06
1370 1587 4.178540 CTGCTCAAAAACTTATGGCATGG 58.821 43.478 10.98 5.50 0.00 3.66
1384 1601 1.526575 GCATGGTGGGTGTGTCCAAG 61.527 60.000 0.00 0.00 38.72 3.61
1385 1602 1.228552 ATGGTGGGTGTGTCCAAGC 60.229 57.895 0.00 0.00 38.72 4.01
1394 1611 2.821969 GGTGTGTCCAAGCAGATGAAAT 59.178 45.455 0.00 0.00 35.97 2.17
1412 1629 8.950208 GATGAAATCTAGGCAGTAAGTAACTT 57.050 34.615 0.00 0.00 41.17 2.66
1494 1711 3.754850 GGGTGCTAAAGTCACGGTAAAAT 59.245 43.478 0.00 0.00 35.39 1.82
1534 1758 8.319057 AGTTTTTCCCCTCTAATTTCAGTTTT 57.681 30.769 0.00 0.00 0.00 2.43
1565 1789 0.458889 CAGGTTGCAAATGGGCATCG 60.459 55.000 0.00 0.00 44.48 3.84
1583 1807 4.667161 GCATCGCAAATTCATGTGTTTTGG 60.667 41.667 14.80 8.54 32.33 3.28
1603 1827 0.531200 GTGGGTCTGTAGAAGGGTCG 59.469 60.000 0.00 0.00 0.00 4.79
1618 1842 7.102847 AGAAGGGTCGTTTTTGTTAATTTCA 57.897 32.000 0.00 0.00 0.00 2.69
1639 1863 5.198965 TCATCACTTACCCTAGGTAGTGTC 58.801 45.833 24.10 0.00 39.52 3.67
1655 2475 7.796054 AGGTAGTGTCCATATATCCAATATGC 58.204 38.462 0.41 0.00 32.22 3.14
1661 2481 9.128404 GTGTCCATATATCCAATATGCATCAAT 57.872 33.333 0.19 0.00 32.22 2.57
1689 2509 0.953727 GCACATTGTGGCTCTGACAA 59.046 50.000 18.05 0.00 37.70 3.18
1695 2515 4.516698 ACATTGTGGCTCTGACAAACTAAG 59.483 41.667 0.00 0.00 36.90 2.18
1760 2580 4.922206 TGGTTTGCTCATTATTCTGGAGT 58.078 39.130 0.00 0.00 0.00 3.85
1769 2589 8.494433 TGCTCATTATTCTGGAGTAAAATACCT 58.506 33.333 0.00 0.00 0.00 3.08
1772 2592 8.998814 TCATTATTCTGGAGTAAAATACCTCCA 58.001 33.333 8.04 8.04 42.95 3.86
1782 2602 4.640771 AAAATACCTCCAAGCTGAGTCA 57.359 40.909 0.00 0.00 0.00 3.41
1785 2605 5.543507 AATACCTCCAAGCTGAGTCATAG 57.456 43.478 0.00 0.00 0.00 2.23
1805 2632 6.371548 TCATAGCCTGTTTCATTGTGTAAGTC 59.628 38.462 0.00 0.00 0.00 3.01
1806 2633 4.718961 AGCCTGTTTCATTGTGTAAGTCT 58.281 39.130 0.00 0.00 0.00 3.24
1808 2635 5.594317 AGCCTGTTTCATTGTGTAAGTCTTT 59.406 36.000 0.00 0.00 0.00 2.52
1809 2636 5.915196 GCCTGTTTCATTGTGTAAGTCTTTC 59.085 40.000 0.00 0.00 0.00 2.62
1810 2637 6.438763 CCTGTTTCATTGTGTAAGTCTTTCC 58.561 40.000 0.00 0.00 0.00 3.13
1827 2663 5.297029 GTCTTTCCAAAGGAGGCATACATAC 59.703 44.000 0.00 0.00 36.67 2.39
1871 2707 3.330198 TGATTTGAGATGCCCTAGGGAT 58.670 45.455 33.21 20.85 36.16 3.85
1878 2714 3.196300 AGATGCCCTAGGGATTATGCAT 58.804 45.455 33.21 24.30 41.73 3.96
1883 2719 4.263462 TGCCCTAGGGATTATGCATTGTAG 60.263 45.833 33.21 0.00 37.50 2.74
1885 2721 4.536090 CCCTAGGGATTATGCATTGTAGGA 59.464 45.833 24.99 0.00 37.50 2.94
1888 2724 5.653255 AGGGATTATGCATTGTAGGACTT 57.347 39.130 3.54 0.00 0.00 3.01
1986 2917 7.769044 GTCCTGAATTCAAGCTAGGTTATGTTA 59.231 37.037 9.88 0.00 0.00 2.41
2019 2950 6.548321 TCTTGGTGGATTATGTTACTTTGGT 58.452 36.000 0.00 0.00 0.00 3.67
2024 2955 6.127730 GGTGGATTATGTTACTTTGGTTCTGG 60.128 42.308 0.00 0.00 0.00 3.86
2037 2968 2.520980 TGGTTCTGGGATAGCTAGGGTA 59.479 50.000 0.00 0.00 0.00 3.69
2051 2982 4.597075 AGCTAGGGTAGTAGGGTAGTCTAC 59.403 50.000 0.95 0.95 39.76 2.59
2107 3038 5.794894 TGGAGATTTGGAGTTTGTCTAGTC 58.205 41.667 0.00 0.00 0.00 2.59
2115 3047 5.057149 TGGAGTTTGTCTAGTCTTTCTTGC 58.943 41.667 0.00 0.00 0.00 4.01
2118 3050 2.743636 TGTCTAGTCTTTCTTGCGGG 57.256 50.000 0.00 0.00 0.00 6.13
2123 3055 1.226746 AGTCTTTCTTGCGGGTTTCG 58.773 50.000 0.00 0.00 42.76 3.46
2130 3062 2.285083 TCTTGCGGGTTTCGAATATGG 58.715 47.619 0.00 0.00 42.43 2.74
2141 3073 6.878923 GGGTTTCGAATATGGTCATCATATGA 59.121 38.462 8.10 8.10 45.54 2.15
2170 3102 6.015688 TGACTTATGTTACGAGAGGAGTTTGT 60.016 38.462 0.00 0.00 0.00 2.83
2211 3143 9.535878 GAAGCTGTACAATCTATAAGTTAAGCT 57.464 33.333 0.00 0.00 35.61 3.74
2212 3144 8.879342 AGCTGTACAATCTATAAGTTAAGCTG 57.121 34.615 0.00 0.00 33.99 4.24
2213 3145 8.478877 AGCTGTACAATCTATAAGTTAAGCTGT 58.521 33.333 0.00 3.12 33.99 4.40
2214 3146 9.745880 GCTGTACAATCTATAAGTTAAGCTGTA 57.254 33.333 0.00 0.00 0.00 2.74
2228 3160 8.879342 AGTTAAGCTGTACAATCTATAAGCTG 57.121 34.615 0.00 0.00 39.98 4.24
2230 3162 9.099454 GTTAAGCTGTACAATCTATAAGCTGTT 57.901 33.333 0.00 0.00 39.98 3.16
2232 3164 6.878317 AGCTGTACAATCTATAAGCTGTTCA 58.122 36.000 0.00 0.00 39.43 3.18
2234 3166 7.824289 AGCTGTACAATCTATAAGCTGTTCAAA 59.176 33.333 0.00 0.00 39.43 2.69
2273 3230 7.692460 ATGACTGCTTTTGTCTGAATATTCA 57.308 32.000 17.07 17.07 35.63 2.57
2362 3319 5.334879 GGACATAACCAGCACAGTAACAAAG 60.335 44.000 0.00 0.00 0.00 2.77
2426 3383 4.202264 ACGAGATCCATGGGAAAGTATGAC 60.202 45.833 13.02 0.00 34.34 3.06
2610 3568 1.665679 GAAGCCATTTTCATCGCTCGA 59.334 47.619 0.00 0.00 0.00 4.04
2646 3604 3.551485 GTGTGATTGTTTCTTGTGGCAAC 59.449 43.478 0.00 0.00 0.00 4.17
2684 3642 2.176546 CGCAAATGGCTCGGTGTG 59.823 61.111 0.00 0.00 41.67 3.82
2689 3647 0.823356 AAATGGCTCGGTGTGCAACT 60.823 50.000 0.00 0.00 38.04 3.16
2717 3675 1.703513 AGGTTAGGGGTGTTGAGGAAC 59.296 52.381 0.00 0.00 0.00 3.62
2719 3677 2.908351 GGTTAGGGGTGTTGAGGAACTA 59.092 50.000 0.00 0.00 41.55 2.24
2734 3696 2.093447 GGAACTAGGGTGACTGTGATGG 60.093 54.545 0.00 0.00 0.00 3.51
2776 3738 0.318955 GCCACTGGTGTTGCACATTC 60.319 55.000 0.00 0.00 35.86 2.67
2779 3741 1.677576 CACTGGTGTTGCACATTCTGT 59.322 47.619 1.61 0.00 35.86 3.41
2780 3742 1.949525 ACTGGTGTTGCACATTCTGTC 59.050 47.619 1.61 0.00 35.86 3.51
2783 3745 0.722469 GTGTTGCACATTCTGTCGCG 60.722 55.000 0.00 0.00 34.08 5.87
2784 3746 0.878086 TGTTGCACATTCTGTCGCGA 60.878 50.000 3.71 3.71 30.65 5.87
2785 3747 0.179240 GTTGCACATTCTGTCGCGAG 60.179 55.000 10.24 0.00 30.65 5.03
2786 3748 0.599991 TTGCACATTCTGTCGCGAGT 60.600 50.000 10.24 0.00 30.65 4.18
2852 3814 2.762745 ACAAGTTCATTCGTAGCGGTT 58.237 42.857 0.00 0.00 0.00 4.44
2853 3815 3.916761 ACAAGTTCATTCGTAGCGGTTA 58.083 40.909 0.00 0.00 0.00 2.85
2854 3816 3.924686 ACAAGTTCATTCGTAGCGGTTAG 59.075 43.478 0.00 0.00 0.00 2.34
2866 3828 2.447089 GCGGTTAGCGGTATTTTCAC 57.553 50.000 5.84 0.00 35.41 3.18
2867 3829 1.063027 GCGGTTAGCGGTATTTTCACC 59.937 52.381 5.84 0.00 35.41 4.02
2868 3830 2.624636 CGGTTAGCGGTATTTTCACCT 58.375 47.619 9.95 0.00 36.35 4.00
2905 3876 1.583054 CCTGGGCTATTACAAGCGTC 58.417 55.000 0.00 0.00 43.74 5.19
2912 3883 3.933332 GGCTATTACAAGCGTCTCAGTTT 59.067 43.478 0.00 0.00 43.74 2.66
2956 3927 1.002134 AGGCCGTGATGGTTCCAAG 60.002 57.895 0.00 0.00 41.21 3.61
3010 3982 3.382083 AAGGTTTGTCTGACCCTGTTT 57.618 42.857 5.17 0.00 37.93 2.83
3023 3995 2.378547 ACCCTGTTTTTCCCATAGCAGA 59.621 45.455 0.00 0.00 0.00 4.26
3027 3999 3.420893 TGTTTTTCCCATAGCAGACAGG 58.579 45.455 0.00 0.00 0.00 4.00
3053 4029 5.045651 AGGGCCCTTTAATTTTGGAGAATTG 60.046 40.000 22.28 0.00 31.96 2.32
3060 4036 8.839343 CCTTTAATTTTGGAGAATTGCAAAGTT 58.161 29.630 1.71 0.00 43.98 2.66
3115 4095 3.056304 CAAGGCCACCAAAATTTACACG 58.944 45.455 5.01 0.00 0.00 4.49
3129 4109 2.060326 TACACGTCGCTTGGAAGAAG 57.940 50.000 0.00 0.00 0.00 2.85
3235 4215 4.726876 GCGTGGTTACCGAGAAATTCAATC 60.727 45.833 0.00 0.00 0.00 2.67
3246 4226 6.088616 CCGAGAAATTCAATCTGTGCTTTTTC 59.911 38.462 0.00 0.00 0.00 2.29
3253 4233 8.897872 ATTCAATCTGTGCTTTTTCTGAAATT 57.102 26.923 3.31 0.00 0.00 1.82
3254 4234 7.703298 TCAATCTGTGCTTTTTCTGAAATTG 57.297 32.000 3.31 2.84 0.00 2.32
3343 4327 2.092968 AGCTTCGGGATTACTGCATCAA 60.093 45.455 0.00 0.00 0.00 2.57
3348 4332 2.680805 CGGGATTACTGCATCAACCTGT 60.681 50.000 0.00 0.00 0.00 4.00
3363 4347 0.040067 CCTGTCAAAAGGTTGCGAGC 60.040 55.000 0.00 0.00 34.50 5.03
3374 4358 0.175760 GTTGCGAGCCTATGACCAGA 59.824 55.000 0.00 0.00 0.00 3.86
3378 4362 1.393603 CGAGCCTATGACCAGACAGA 58.606 55.000 0.00 0.00 0.00 3.41
3382 4366 1.137872 GCCTATGACCAGACAGACAGG 59.862 57.143 0.00 0.00 0.00 4.00
3409 4393 3.339093 GGGGGAGGAAGGTGGTGG 61.339 72.222 0.00 0.00 0.00 4.61
3424 4408 2.285668 TGGGAGGAGGGAGCCAAG 60.286 66.667 0.00 0.00 0.00 3.61
3458 4442 1.599047 CAGAAGGAGGCCGTCATGT 59.401 57.895 0.00 0.00 34.53 3.21
3459 4443 0.036010 CAGAAGGAGGCCGTCATGTT 60.036 55.000 0.00 0.00 34.53 2.71
3460 4444 0.250513 AGAAGGAGGCCGTCATGTTC 59.749 55.000 0.00 0.00 34.53 3.18
3461 4445 0.744771 GAAGGAGGCCGTCATGTTCC 60.745 60.000 0.00 0.00 32.42 3.62
3462 4446 2.124695 GGAGGCCGTCATGTTCCC 60.125 66.667 0.00 0.00 0.00 3.97
3463 4447 2.668632 GAGGCCGTCATGTTCCCA 59.331 61.111 0.00 0.00 0.00 4.37
3464 4448 1.450312 GAGGCCGTCATGTTCCCAG 60.450 63.158 0.00 0.00 0.00 4.45
3465 4449 2.438434 GGCCGTCATGTTCCCAGG 60.438 66.667 0.00 0.00 0.00 4.45
3466 4450 3.134127 GCCGTCATGTTCCCAGGC 61.134 66.667 0.00 0.00 37.61 4.85
3467 4451 2.350895 CCGTCATGTTCCCAGGCA 59.649 61.111 0.00 0.00 0.00 4.75
3468 4452 1.077501 CCGTCATGTTCCCAGGCAT 60.078 57.895 0.00 0.00 0.00 4.40
3469 4453 1.097547 CCGTCATGTTCCCAGGCATC 61.098 60.000 0.00 0.00 0.00 3.91
3470 4454 0.392863 CGTCATGTTCCCAGGCATCA 60.393 55.000 0.00 0.00 0.00 3.07
3471 4455 1.386533 GTCATGTTCCCAGGCATCAG 58.613 55.000 0.00 0.00 0.00 2.90
3472 4456 0.394762 TCATGTTCCCAGGCATCAGC 60.395 55.000 0.00 0.00 41.10 4.26
3473 4457 1.452651 ATGTTCCCAGGCATCAGCG 60.453 57.895 0.00 0.00 43.41 5.18
3474 4458 1.913951 ATGTTCCCAGGCATCAGCGA 61.914 55.000 0.00 0.00 43.41 4.93
3475 4459 1.377202 GTTCCCAGGCATCAGCGAA 60.377 57.895 0.00 0.00 43.41 4.70
3476 4460 0.749454 GTTCCCAGGCATCAGCGAAT 60.749 55.000 0.00 0.00 43.41 3.34
3477 4461 0.464373 TTCCCAGGCATCAGCGAATC 60.464 55.000 0.00 0.00 43.41 2.52
3478 4462 1.895707 CCCAGGCATCAGCGAATCC 60.896 63.158 0.00 0.00 43.41 3.01
3479 4463 1.153107 CCAGGCATCAGCGAATCCA 60.153 57.895 0.00 0.00 43.41 3.41
3480 4464 1.442526 CCAGGCATCAGCGAATCCAC 61.443 60.000 0.00 0.00 43.41 4.02
3481 4465 1.153086 AGGCATCAGCGAATCCACC 60.153 57.895 0.00 0.00 43.41 4.61
3482 4466 1.153086 GGCATCAGCGAATCCACCT 60.153 57.895 0.00 0.00 43.41 4.00
3483 4467 1.442526 GGCATCAGCGAATCCACCTG 61.443 60.000 0.00 0.00 43.41 4.00
3484 4468 2.020131 CATCAGCGAATCCACCTGC 58.980 57.895 0.00 0.00 0.00 4.85
3485 4469 1.153086 ATCAGCGAATCCACCTGCC 60.153 57.895 0.00 0.00 0.00 4.85
3486 4470 2.615227 ATCAGCGAATCCACCTGCCC 62.615 60.000 0.00 0.00 0.00 5.36
3487 4471 4.115199 AGCGAATCCACCTGCCCC 62.115 66.667 0.00 0.00 0.00 5.80
3488 4472 4.424711 GCGAATCCACCTGCCCCA 62.425 66.667 0.00 0.00 0.00 4.96
3489 4473 2.438434 CGAATCCACCTGCCCCAC 60.438 66.667 0.00 0.00 0.00 4.61
3490 4474 2.971598 CGAATCCACCTGCCCCACT 61.972 63.158 0.00 0.00 0.00 4.00
3491 4475 1.622607 CGAATCCACCTGCCCCACTA 61.623 60.000 0.00 0.00 0.00 2.74
3492 4476 0.623723 GAATCCACCTGCCCCACTAA 59.376 55.000 0.00 0.00 0.00 2.24
3493 4477 0.331616 AATCCACCTGCCCCACTAAC 59.668 55.000 0.00 0.00 0.00 2.34
3494 4478 0.844661 ATCCACCTGCCCCACTAACA 60.845 55.000 0.00 0.00 0.00 2.41
3495 4479 1.002134 CCACCTGCCCCACTAACAG 60.002 63.158 0.00 0.00 0.00 3.16
3496 4480 1.675641 CACCTGCCCCACTAACAGC 60.676 63.158 0.00 0.00 0.00 4.40
3497 4481 2.436646 CCTGCCCCACTAACAGCG 60.437 66.667 0.00 0.00 0.00 5.18
3498 4482 2.347490 CTGCCCCACTAACAGCGT 59.653 61.111 0.00 0.00 0.00 5.07
3499 4483 1.741770 CTGCCCCACTAACAGCGTC 60.742 63.158 0.00 0.00 0.00 5.19
3500 4484 2.345991 GCCCCACTAACAGCGTCA 59.654 61.111 0.00 0.00 0.00 4.35
3501 4485 1.078426 GCCCCACTAACAGCGTCAT 60.078 57.895 0.00 0.00 0.00 3.06
3502 4486 1.090052 GCCCCACTAACAGCGTCATC 61.090 60.000 0.00 0.00 0.00 2.92
3503 4487 0.462047 CCCCACTAACAGCGTCATCC 60.462 60.000 0.00 0.00 0.00 3.51
3504 4488 0.249120 CCCACTAACAGCGTCATCCA 59.751 55.000 0.00 0.00 0.00 3.41
3505 4489 1.338674 CCCACTAACAGCGTCATCCAA 60.339 52.381 0.00 0.00 0.00 3.53
3506 4490 2.632377 CCACTAACAGCGTCATCCAAT 58.368 47.619 0.00 0.00 0.00 3.16
3507 4491 2.609459 CCACTAACAGCGTCATCCAATC 59.391 50.000 0.00 0.00 0.00 2.67
3508 4492 2.282555 CACTAACAGCGTCATCCAATCG 59.717 50.000 0.00 0.00 0.00 3.34
3509 4493 2.165641 ACTAACAGCGTCATCCAATCGA 59.834 45.455 0.00 0.00 0.00 3.59
3510 4494 2.315925 AACAGCGTCATCCAATCGAT 57.684 45.000 0.00 0.00 0.00 3.59
3511 4495 1.858091 ACAGCGTCATCCAATCGATC 58.142 50.000 0.00 0.00 0.00 3.69
3512 4496 0.780596 CAGCGTCATCCAATCGATCG 59.219 55.000 9.36 9.36 0.00 3.69
3513 4497 0.941463 AGCGTCATCCAATCGATCGC 60.941 55.000 11.09 15.16 41.92 4.58
3514 4498 1.891060 GCGTCATCCAATCGATCGCC 61.891 60.000 11.09 0.00 37.93 5.54
3515 4499 0.319040 CGTCATCCAATCGATCGCCT 60.319 55.000 11.09 0.00 0.00 5.52
3516 4500 1.143305 GTCATCCAATCGATCGCCTG 58.857 55.000 11.09 9.67 0.00 4.85
3517 4501 0.752658 TCATCCAATCGATCGCCTGT 59.247 50.000 11.09 0.00 0.00 4.00
3518 4502 0.863799 CATCCAATCGATCGCCTGTG 59.136 55.000 11.09 5.28 0.00 3.66
3519 4503 0.882042 ATCCAATCGATCGCCTGTGC 60.882 55.000 11.09 0.00 0.00 4.57
3520 4504 2.537560 CCAATCGATCGCCTGTGCC 61.538 63.158 11.09 0.00 0.00 5.01
3521 4505 2.586079 AATCGATCGCCTGTGCCG 60.586 61.111 11.09 0.00 0.00 5.69
3522 4506 3.371097 AATCGATCGCCTGTGCCGT 62.371 57.895 11.09 0.00 0.00 5.68
3523 4507 2.852495 AATCGATCGCCTGTGCCGTT 62.852 55.000 11.09 0.00 0.00 4.44
3524 4508 3.853330 CGATCGCCTGTGCCGTTG 61.853 66.667 0.26 0.00 0.00 4.10
3525 4509 2.742372 GATCGCCTGTGCCGTTGT 60.742 61.111 0.00 0.00 0.00 3.32
3526 4510 1.447140 GATCGCCTGTGCCGTTGTA 60.447 57.895 0.00 0.00 0.00 2.41
3527 4511 1.693083 GATCGCCTGTGCCGTTGTAC 61.693 60.000 0.00 0.00 0.00 2.90
3528 4512 3.773630 CGCCTGTGCCGTTGTACG 61.774 66.667 0.00 0.00 42.11 3.67
3529 4513 4.084888 GCCTGTGCCGTTGTACGC 62.085 66.667 0.00 0.00 40.91 4.42
3530 4514 3.773630 CCTGTGCCGTTGTACGCG 61.774 66.667 3.53 3.53 40.91 6.01
3531 4515 2.731721 CTGTGCCGTTGTACGCGA 60.732 61.111 15.93 0.00 40.91 5.87
3532 4516 2.716828 CTGTGCCGTTGTACGCGAG 61.717 63.158 15.93 0.00 40.91 5.03
3546 4530 2.673833 ACGCGAGTCCTTTTTACTCTG 58.326 47.619 15.93 0.00 44.19 3.35
3547 4531 1.390463 CGCGAGTCCTTTTTACTCTGC 59.610 52.381 0.00 0.00 41.02 4.26
3548 4532 2.413837 GCGAGTCCTTTTTACTCTGCA 58.586 47.619 12.05 0.00 41.02 4.41
3549 4533 3.003480 GCGAGTCCTTTTTACTCTGCAT 58.997 45.455 12.05 0.00 41.02 3.96
3550 4534 4.181578 GCGAGTCCTTTTTACTCTGCATA 58.818 43.478 12.05 0.00 41.02 3.14
3551 4535 4.811557 GCGAGTCCTTTTTACTCTGCATAT 59.188 41.667 12.05 0.00 41.02 1.78
3552 4536 5.294552 GCGAGTCCTTTTTACTCTGCATATT 59.705 40.000 12.05 0.00 41.02 1.28
3553 4537 6.479001 GCGAGTCCTTTTTACTCTGCATATTA 59.521 38.462 12.05 0.00 41.02 0.98
3554 4538 7.306866 GCGAGTCCTTTTTACTCTGCATATTAG 60.307 40.741 12.05 0.00 41.02 1.73
3555 4539 7.169982 CGAGTCCTTTTTACTCTGCATATTAGG 59.830 40.741 0.00 0.00 41.02 2.69
3556 4540 7.862675 AGTCCTTTTTACTCTGCATATTAGGT 58.137 34.615 0.00 0.00 0.00 3.08
3557 4541 8.329502 AGTCCTTTTTACTCTGCATATTAGGTT 58.670 33.333 0.00 0.00 0.00 3.50
3558 4542 8.957466 GTCCTTTTTACTCTGCATATTAGGTTT 58.043 33.333 0.00 0.00 0.00 3.27
3559 4543 8.956426 TCCTTTTTACTCTGCATATTAGGTTTG 58.044 33.333 0.00 0.00 0.00 2.93
3560 4544 8.739972 CCTTTTTACTCTGCATATTAGGTTTGT 58.260 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.398522 AGCTATCATCCCACGGACCA 60.399 55.000 0.00 0.00 32.98 4.02
71 76 0.463833 GTTTGGCCCAGGAGATACCG 60.464 60.000 0.00 0.00 44.74 4.02
89 94 1.154221 GCCGATAGAGGAGAGGGGT 59.846 63.158 0.00 0.00 39.76 4.95
132 143 0.965363 CACCCGCAGCCCAGTAATTT 60.965 55.000 0.00 0.00 0.00 1.82
135 146 4.715523 GCACCCGCAGCCCAGTAA 62.716 66.667 0.00 0.00 38.36 2.24
161 176 2.224843 TGGGCAACTGACAGACATTCAT 60.225 45.455 10.08 0.00 0.00 2.57
162 177 1.142667 TGGGCAACTGACAGACATTCA 59.857 47.619 10.08 0.00 0.00 2.57
163 178 1.896220 TGGGCAACTGACAGACATTC 58.104 50.000 10.08 0.00 0.00 2.67
164 179 2.165167 CATGGGCAACTGACAGACATT 58.835 47.619 10.08 0.00 0.00 2.71
165 180 1.830279 CATGGGCAACTGACAGACAT 58.170 50.000 10.08 2.92 0.00 3.06
166 181 0.890542 GCATGGGCAACTGACAGACA 60.891 55.000 10.08 0.59 40.72 3.41
167 182 0.607489 AGCATGGGCAACTGACAGAC 60.607 55.000 10.08 0.00 44.61 3.51
168 183 0.321919 GAGCATGGGCAACTGACAGA 60.322 55.000 10.08 0.00 44.61 3.41
169 184 1.310933 GGAGCATGGGCAACTGACAG 61.311 60.000 0.00 0.00 44.61 3.51
170 185 1.303561 GGAGCATGGGCAACTGACA 60.304 57.895 0.00 0.00 44.61 3.58
171 186 1.303561 TGGAGCATGGGCAACTGAC 60.304 57.895 0.00 0.00 44.61 3.51
172 187 1.001764 CTGGAGCATGGGCAACTGA 60.002 57.895 0.00 0.00 44.61 3.41
173 188 2.707849 GCTGGAGCATGGGCAACTG 61.708 63.158 0.00 0.00 44.61 3.16
174 189 2.362120 GCTGGAGCATGGGCAACT 60.362 61.111 0.00 0.00 44.61 3.16
175 190 3.455469 GGCTGGAGCATGGGCAAC 61.455 66.667 0.20 0.00 44.61 4.17
212 228 1.511613 GGATCAGGGGAGGAACATCA 58.488 55.000 0.00 0.00 0.00 3.07
230 246 2.650116 CGTCTGACTCTGGTGGGGG 61.650 68.421 6.21 0.00 0.00 5.40
459 476 1.265635 CTAGCGCTGGCAGAGTAGTAG 59.734 57.143 22.90 13.31 43.41 2.57
469 486 1.303309 ATCAATCAACTAGCGCTGGC 58.697 50.000 22.90 0.00 40.37 4.85
471 488 2.938451 TGGAATCAATCAACTAGCGCTG 59.062 45.455 22.90 12.81 0.00 5.18
474 491 6.038161 TGGTATTTGGAATCAATCAACTAGCG 59.962 38.462 0.00 0.00 32.75 4.26
479 496 8.281212 AGTACTGGTATTTGGAATCAATCAAC 57.719 34.615 0.00 0.00 32.28 3.18
483 500 7.888021 TGACAAGTACTGGTATTTGGAATCAAT 59.112 33.333 1.89 0.00 37.17 2.57
486 503 7.681939 TTGACAAGTACTGGTATTTGGAATC 57.318 36.000 1.89 8.54 37.17 2.52
487 504 8.522830 CAATTGACAAGTACTGGTATTTGGAAT 58.477 33.333 1.89 12.00 37.17 3.01
496 513 3.882888 CCACACAATTGACAAGTACTGGT 59.117 43.478 13.59 1.37 0.00 4.00
500 517 4.083484 GGTAGCCACACAATTGACAAGTAC 60.083 45.833 13.59 6.31 0.00 2.73
506 523 2.504367 ACAGGTAGCCACACAATTGAC 58.496 47.619 13.59 0.00 0.00 3.18
508 525 2.607771 GCAACAGGTAGCCACACAATTG 60.608 50.000 3.24 3.24 0.00 2.32
518 535 3.691118 TGAATCATTGAGCAACAGGTAGC 59.309 43.478 0.00 0.00 0.00 3.58
519 536 6.446781 AATGAATCATTGAGCAACAGGTAG 57.553 37.500 7.79 0.00 32.39 3.18
522 539 5.716094 TCAAATGAATCATTGAGCAACAGG 58.284 37.500 9.47 0.00 34.04 4.00
536 553 7.264373 AGTTCGAGTTCAAGTTCAAATGAAT 57.736 32.000 0.00 0.00 37.82 2.57
539 556 5.682862 CCAAGTTCGAGTTCAAGTTCAAATG 59.317 40.000 0.00 0.00 0.00 2.32
555 572 2.737252 GAGGCTAACAGTTCCAAGTTCG 59.263 50.000 0.00 0.00 0.00 3.95
557 574 2.550208 CGGAGGCTAACAGTTCCAAGTT 60.550 50.000 0.00 0.00 0.00 2.66
559 576 1.002087 ACGGAGGCTAACAGTTCCAAG 59.998 52.381 0.00 0.00 0.00 3.61
563 580 1.270678 ACCAACGGAGGCTAACAGTTC 60.271 52.381 0.00 0.00 0.00 3.01
564 581 0.763035 ACCAACGGAGGCTAACAGTT 59.237 50.000 0.00 0.00 0.00 3.16
566 583 1.270625 TGAACCAACGGAGGCTAACAG 60.271 52.381 0.00 0.00 0.00 3.16
567 584 0.759959 TGAACCAACGGAGGCTAACA 59.240 50.000 0.00 0.00 0.00 2.41
568 585 2.109425 ATGAACCAACGGAGGCTAAC 57.891 50.000 0.00 0.00 0.00 2.34
571 588 0.541863 CCTATGAACCAACGGAGGCT 59.458 55.000 0.00 0.00 0.00 4.58
572 589 0.463833 CCCTATGAACCAACGGAGGC 60.464 60.000 0.00 0.00 0.00 4.70
573 590 0.909623 ACCCTATGAACCAACGGAGG 59.090 55.000 0.00 0.00 0.00 4.30
574 591 3.028850 TCTACCCTATGAACCAACGGAG 58.971 50.000 0.00 0.00 0.00 4.63
575 592 3.104519 TCTACCCTATGAACCAACGGA 57.895 47.619 0.00 0.00 0.00 4.69
576 593 3.899052 TTCTACCCTATGAACCAACGG 57.101 47.619 0.00 0.00 0.00 4.44
606 623 8.055790 CCTCTGAAAATTTTCTACCCTATTCCT 58.944 37.037 26.73 0.00 38.02 3.36
607 624 8.053355 TCCTCTGAAAATTTTCTACCCTATTCC 58.947 37.037 26.73 2.36 38.02 3.01
608 625 9.462606 TTCCTCTGAAAATTTTCTACCCTATTC 57.537 33.333 26.73 2.84 38.02 1.75
609 626 9.467796 CTTCCTCTGAAAATTTTCTACCCTATT 57.532 33.333 26.73 0.00 38.02 1.73
610 627 8.055790 CCTTCCTCTGAAAATTTTCTACCCTAT 58.944 37.037 26.73 0.00 38.02 2.57
611 628 7.402862 CCTTCCTCTGAAAATTTTCTACCCTA 58.597 38.462 26.73 8.87 38.02 3.53
612 629 6.249192 CCTTCCTCTGAAAATTTTCTACCCT 58.751 40.000 26.73 0.00 38.02 4.34
613 630 5.419155 CCCTTCCTCTGAAAATTTTCTACCC 59.581 44.000 26.73 6.12 38.02 3.69
614 631 5.419155 CCCCTTCCTCTGAAAATTTTCTACC 59.581 44.000 26.73 6.46 38.02 3.18
615 632 6.246163 TCCCCTTCCTCTGAAAATTTTCTAC 58.754 40.000 26.73 6.79 38.02 2.59
616 633 6.463053 TCCCCTTCCTCTGAAAATTTTCTA 57.537 37.500 26.73 16.19 38.02 2.10
617 634 5.339423 TCCCCTTCCTCTGAAAATTTTCT 57.661 39.130 26.73 0.00 38.02 2.52
618 635 5.047021 CCTTCCCCTTCCTCTGAAAATTTTC 60.047 44.000 21.60 21.60 37.69 2.29
619 636 4.840680 CCTTCCCCTTCCTCTGAAAATTTT 59.159 41.667 2.28 2.28 0.00 1.82
620 637 4.140686 ACCTTCCCCTTCCTCTGAAAATTT 60.141 41.667 0.00 0.00 0.00 1.82
621 638 3.402708 ACCTTCCCCTTCCTCTGAAAATT 59.597 43.478 0.00 0.00 0.00 1.82
622 639 2.996742 ACCTTCCCCTTCCTCTGAAAAT 59.003 45.455 0.00 0.00 0.00 1.82
623 640 2.428901 ACCTTCCCCTTCCTCTGAAAA 58.571 47.619 0.00 0.00 0.00 2.29
624 641 2.133858 ACCTTCCCCTTCCTCTGAAA 57.866 50.000 0.00 0.00 0.00 2.69
625 642 2.133858 AACCTTCCCCTTCCTCTGAA 57.866 50.000 0.00 0.00 0.00 3.02
626 643 2.133858 AAACCTTCCCCTTCCTCTGA 57.866 50.000 0.00 0.00 0.00 3.27
627 644 2.108250 TGAAAACCTTCCCCTTCCTCTG 59.892 50.000 0.00 0.00 0.00 3.35
628 645 2.428901 TGAAAACCTTCCCCTTCCTCT 58.571 47.619 0.00 0.00 0.00 3.69
629 646 2.971901 TGAAAACCTTCCCCTTCCTC 57.028 50.000 0.00 0.00 0.00 3.71
630 647 3.923273 AATGAAAACCTTCCCCTTCCT 57.077 42.857 0.00 0.00 0.00 3.36
631 648 4.974645 AAAATGAAAACCTTCCCCTTCC 57.025 40.909 0.00 0.00 0.00 3.46
635 652 7.004555 ACTTGATAAAATGAAAACCTTCCCC 57.995 36.000 0.00 0.00 0.00 4.81
639 656 9.546428 CCAAGAACTTGATAAAATGAAAACCTT 57.454 29.630 14.99 0.00 42.93 3.50
657 675 4.910195 TCACATCATTGCTACCAAGAACT 58.090 39.130 0.00 0.00 33.80 3.01
689 707 3.260380 TCCCGCAAATTCATTCAACCAAT 59.740 39.130 0.00 0.00 0.00 3.16
734 756 9.784531 AGTGCAGTAATGCAGATTTATTATACT 57.215 29.630 19.62 4.39 46.32 2.12
735 757 9.817365 CAGTGCAGTAATGCAGATTTATTATAC 57.183 33.333 19.62 1.89 46.32 1.47
768 790 1.626825 GCTGTGAGGTTACCAGGGTAA 59.373 52.381 3.51 6.82 38.14 2.85
769 791 1.272807 GCTGTGAGGTTACCAGGGTA 58.727 55.000 3.51 0.00 0.00 3.69
770 792 0.766674 TGCTGTGAGGTTACCAGGGT 60.767 55.000 3.51 0.00 0.00 4.34
771 793 0.400213 TTGCTGTGAGGTTACCAGGG 59.600 55.000 3.51 0.00 0.00 4.45
776 798 6.319141 AGAAATTTCTTGCTGTGAGGTTAC 57.681 37.500 15.11 0.00 32.55 2.50
779 801 7.014615 ACAATAAGAAATTTCTTGCTGTGAGGT 59.985 33.333 33.75 20.05 46.34 3.85
808 830 4.637483 TTTGTTGCAAGGAGAAGACTTG 57.363 40.909 0.00 0.00 46.15 3.16
830 852 0.393077 AGAGTGCGTGCTTGGTAGTT 59.607 50.000 0.00 0.00 0.00 2.24
835 857 2.253452 GCAAGAGTGCGTGCTTGG 59.747 61.111 12.29 0.00 44.57 3.61
854 876 4.334481 CCACGGGTGGTAATTATCTTGAAC 59.666 45.833 9.72 0.00 45.53 3.18
856 878 4.145365 CCACGGGTGGTAATTATCTTGA 57.855 45.455 9.72 0.00 45.53 3.02
873 895 0.744281 ACTTTCCAAAAGTGGCCACG 59.256 50.000 29.68 15.52 45.54 4.94
887 909 0.389426 TGGCTAGCGACGGAACTTTC 60.389 55.000 9.00 0.00 0.00 2.62
891 914 1.805945 CAGTGGCTAGCGACGGAAC 60.806 63.158 22.06 7.50 0.00 3.62
894 917 2.337749 CTACCAGTGGCTAGCGACGG 62.338 65.000 26.59 26.59 0.00 4.79
896 919 1.321074 ACCTACCAGTGGCTAGCGAC 61.321 60.000 21.02 21.02 0.00 5.19
993 1017 3.573491 GCCGCCGCCATTCTACAC 61.573 66.667 0.00 0.00 0.00 2.90
1011 1035 1.298859 GGATCACCCAACGCAGTGTC 61.299 60.000 0.00 0.00 45.00 3.67
1014 1038 1.003355 CTGGATCACCCAACGCAGT 60.003 57.895 0.00 0.00 46.07 4.40
1050 1074 3.454573 TAGAATCGTGCCGCCCGT 61.455 61.111 0.00 0.00 0.00 5.28
1056 1080 0.872021 CCTCTGCGTAGAATCGTGCC 60.872 60.000 4.35 0.00 31.21 5.01
1158 1182 1.405526 GCAGCTCCGAACCTGTCATTA 60.406 52.381 0.00 0.00 0.00 1.90
1171 1195 3.678951 GAGAGGGCAGTGCAGCTCC 62.679 68.421 18.61 8.82 34.85 4.70
1185 1209 7.041916 ACGAACTATAGTAATTGACGAGGAGAG 60.042 40.741 5.65 0.00 0.00 3.20
1203 1227 4.226620 ACCCTTCAAACCCATACGAACTAT 59.773 41.667 0.00 0.00 0.00 2.12
1213 1237 1.146152 CCACCTAACCCTTCAAACCCA 59.854 52.381 0.00 0.00 0.00 4.51
1237 1261 1.069022 CATCAAACACTTCCACAGCCG 60.069 52.381 0.00 0.00 0.00 5.52
1247 1271 3.009723 CGGCTACATTCCATCAAACACT 58.990 45.455 0.00 0.00 0.00 3.55
1291 1322 1.134753 ACACACATTTATGCCATGCCG 59.865 47.619 0.00 0.00 0.00 5.69
1302 1333 5.754406 CACATGGAATTGAACACACACATTT 59.246 36.000 0.00 0.00 0.00 2.32
1310 1341 2.987413 TCGCACATGGAATTGAACAC 57.013 45.000 0.00 0.00 0.00 3.32
1347 1378 3.302365 TGCCATAAGTTTTTGAGCAGC 57.698 42.857 0.00 0.00 0.00 5.25
1353 1570 3.007831 ACCCACCATGCCATAAGTTTTTG 59.992 43.478 0.00 0.00 0.00 2.44
1359 1576 1.105457 CACACCCACCATGCCATAAG 58.895 55.000 0.00 0.00 0.00 1.73
1369 1586 1.898574 CTGCTTGGACACACCCACC 60.899 63.158 0.00 0.00 35.62 4.61
1370 1587 0.250901 ATCTGCTTGGACACACCCAC 60.251 55.000 0.00 0.00 35.62 4.61
1384 1601 5.363939 ACTTACTGCCTAGATTTCATCTGC 58.636 41.667 0.00 0.00 40.51 4.26
1385 1602 8.200792 AGTTACTTACTGCCTAGATTTCATCTG 58.799 37.037 0.00 0.00 36.53 2.90
1394 1611 7.926555 GCATGAATAAGTTACTTACTGCCTAGA 59.073 37.037 7.00 0.00 37.12 2.43
1406 1623 9.638239 TCAAATTTTCAGGCATGAATAAGTTAC 57.362 29.630 15.42 0.00 44.75 2.50
1412 1629 6.406177 GGAGCTCAAATTTTCAGGCATGAATA 60.406 38.462 15.42 10.79 44.75 1.75
1534 1758 7.319646 CCATTTGCAACCTGTAGCTATTTAAA 58.680 34.615 0.00 0.00 0.00 1.52
1537 1761 4.160252 CCCATTTGCAACCTGTAGCTATTT 59.840 41.667 0.00 0.00 0.00 1.40
1539 1763 3.290710 CCCATTTGCAACCTGTAGCTAT 58.709 45.455 0.00 0.00 0.00 2.97
1541 1765 1.549203 CCCATTTGCAACCTGTAGCT 58.451 50.000 0.00 0.00 0.00 3.32
1565 1789 3.250521 CCACCCAAAACACATGAATTTGC 59.749 43.478 0.00 0.00 33.72 3.68
1583 1807 0.903236 GACCCTTCTACAGACCCACC 59.097 60.000 0.00 0.00 0.00 4.61
1603 1827 9.758651 AGGGTAAGTGATGAAATTAACAAAAAC 57.241 29.630 0.00 0.00 0.00 2.43
1618 1842 4.016851 TGGACACTACCTAGGGTAAGTGAT 60.017 45.833 31.76 21.64 40.72 3.06
1655 2475 7.626446 CCACAATGTGCATTTGATAATTGATG 58.374 34.615 16.51 4.60 31.34 3.07
1661 2481 4.463539 AGAGCCACAATGTGCATTTGATAA 59.536 37.500 16.51 0.00 31.34 1.75
1717 2537 1.069022 GCAACGAAGCAGATGAAGCAA 60.069 47.619 0.00 0.00 0.00 3.91
1722 2542 0.035317 ACCAGCAACGAAGCAGATGA 59.965 50.000 6.62 0.00 36.85 2.92
1760 2580 5.755409 TGACTCAGCTTGGAGGTATTTTA 57.245 39.130 6.08 0.00 39.27 1.52
1767 2587 1.202627 GGCTATGACTCAGCTTGGAGG 60.203 57.143 6.08 0.00 39.27 4.30
1769 2589 1.483827 CAGGCTATGACTCAGCTTGGA 59.516 52.381 0.00 0.00 41.13 3.53
1772 2592 3.008375 TGAAACAGGCTATGACTCAGCTT 59.992 43.478 0.00 0.00 39.09 3.74
1782 2602 6.476378 AGACTTACACAATGAAACAGGCTAT 58.524 36.000 0.00 0.00 0.00 2.97
1785 2605 5.438761 AAGACTTACACAATGAAACAGGC 57.561 39.130 0.00 0.00 0.00 4.85
1805 2632 5.440610 AGTATGTATGCCTCCTTTGGAAAG 58.559 41.667 0.00 0.00 35.79 2.62
1806 2633 5.450818 AGTATGTATGCCTCCTTTGGAAA 57.549 39.130 0.00 0.00 0.00 3.13
1808 2635 7.016914 AGTATAGTATGTATGCCTCCTTTGGA 58.983 38.462 0.00 0.00 0.00 3.53
1809 2636 7.099764 CAGTATAGTATGTATGCCTCCTTTGG 58.900 42.308 0.00 0.00 0.00 3.28
1810 2637 6.591834 GCAGTATAGTATGTATGCCTCCTTTG 59.408 42.308 0.00 0.00 0.00 2.77
1863 2699 5.249393 AGTCCTACAATGCATAATCCCTAGG 59.751 44.000 0.00 0.06 0.00 3.02
1998 2929 6.432783 CAGAACCAAAGTAACATAATCCACCA 59.567 38.462 0.00 0.00 0.00 4.17
2001 2932 5.949354 CCCAGAACCAAAGTAACATAATCCA 59.051 40.000 0.00 0.00 0.00 3.41
2002 2933 6.184789 TCCCAGAACCAAAGTAACATAATCC 58.815 40.000 0.00 0.00 0.00 3.01
2003 2934 7.881775 ATCCCAGAACCAAAGTAACATAATC 57.118 36.000 0.00 0.00 0.00 1.75
2007 2938 5.044846 AGCTATCCCAGAACCAAAGTAACAT 60.045 40.000 0.00 0.00 0.00 2.71
2019 2950 4.044317 CCTACTACCCTAGCTATCCCAGAA 59.956 50.000 0.00 0.00 0.00 3.02
2024 2955 4.539696 ACTACCCTACTACCCTAGCTATCC 59.460 50.000 0.00 0.00 0.00 2.59
2037 2968 4.708421 TGCATTTTCGTAGACTACCCTACT 59.292 41.667 7.05 0.00 37.47 2.57
2051 2982 6.255884 CATGAATTCAGTCATGCATTTTCG 57.744 37.500 14.54 0.00 46.14 3.46
2107 3038 2.989422 ATTCGAAACCCGCAAGAAAG 57.011 45.000 0.00 0.00 43.02 2.62
2115 3047 3.462982 TGATGACCATATTCGAAACCCG 58.537 45.455 0.00 0.00 40.25 5.28
2141 3073 8.466617 ACTCCTCTCGTAACATAAGTCATATT 57.533 34.615 0.00 0.00 0.00 1.28
2157 3089 3.653344 TGAACATGACAAACTCCTCTCG 58.347 45.455 0.00 0.00 0.00 4.04
2170 3102 8.334263 TGTACAGCTTCATATTTTGAACATGA 57.666 30.769 0.00 0.00 39.44 3.07
2208 3140 6.878317 TGAACAGCTTATAGATTGTACAGCT 58.122 36.000 0.00 0.45 38.13 4.24
2237 3169 8.340618 ACAAAAGCAGTCATAACATAAGTCAT 57.659 30.769 0.00 0.00 0.00 3.06
2238 3170 7.661437 AGACAAAAGCAGTCATAACATAAGTCA 59.339 33.333 0.00 0.00 38.46 3.41
2239 3171 7.959651 CAGACAAAAGCAGTCATAACATAAGTC 59.040 37.037 0.00 0.00 38.46 3.01
2241 3173 8.032952 TCAGACAAAAGCAGTCATAACATAAG 57.967 34.615 0.00 0.00 38.46 1.73
2243 3175 7.977789 TTCAGACAAAAGCAGTCATAACATA 57.022 32.000 0.00 0.00 38.46 2.29
2244 3176 6.882610 TTCAGACAAAAGCAGTCATAACAT 57.117 33.333 0.00 0.00 38.46 2.71
2245 3177 6.882610 ATTCAGACAAAAGCAGTCATAACA 57.117 33.333 0.00 0.00 38.46 2.41
2246 3178 9.495754 GAATATTCAGACAAAAGCAGTCATAAC 57.504 33.333 10.68 0.00 38.46 1.89
2248 3180 8.791327 TGAATATTCAGACAAAAGCAGTCATA 57.209 30.769 14.23 0.00 38.46 2.15
2249 3181 7.692460 TGAATATTCAGACAAAAGCAGTCAT 57.308 32.000 14.23 0.00 38.46 3.06
2273 3230 5.445069 TGCAAGGGTACTGCAAATATGTAT 58.555 37.500 5.85 0.00 35.46 2.29
2281 3238 1.791103 GCGTTGCAAGGGTACTGCAA 61.791 55.000 19.88 14.91 44.88 4.08
2362 3319 0.249657 CGGCTCCCAGAGACATTAGC 60.250 60.000 0.00 0.00 37.60 3.09
2426 3383 5.904362 TCACATATAGATGTCGAGGGATG 57.096 43.478 0.00 0.00 44.82 3.51
2530 3487 1.361668 CGTACAGACCCAGCACATGC 61.362 60.000 0.00 0.00 42.49 4.06
2533 3490 1.964448 CTCGTACAGACCCAGCACA 59.036 57.895 0.00 0.00 0.00 4.57
2610 3568 6.235231 ACAATCACACGTATCCCTAATCTT 57.765 37.500 0.00 0.00 0.00 2.40
2646 3604 3.060272 CGCTGGCAAAACATCTATCTACG 60.060 47.826 0.00 0.00 0.00 3.51
2684 3642 2.437413 CCTAACCTCCCAGAAAGTTGC 58.563 52.381 0.00 0.00 0.00 4.17
2689 3647 1.368374 CACCCCTAACCTCCCAGAAA 58.632 55.000 0.00 0.00 0.00 2.52
2717 3675 1.406069 GCACCATCACAGTCACCCTAG 60.406 57.143 0.00 0.00 0.00 3.02
2719 3677 1.130054 AGCACCATCACAGTCACCCT 61.130 55.000 0.00 0.00 0.00 4.34
2783 3745 1.136224 GCTGCTTTTACGCACTCACTC 60.136 52.381 0.00 0.00 35.74 3.51
2784 3746 0.868406 GCTGCTTTTACGCACTCACT 59.132 50.000 0.00 0.00 35.74 3.41
2785 3747 0.586319 TGCTGCTTTTACGCACTCAC 59.414 50.000 0.00 0.00 35.74 3.51
2786 3748 0.867746 CTGCTGCTTTTACGCACTCA 59.132 50.000 0.00 0.00 35.74 3.41
2809 3771 1.884235 CTTTGGCCAGTATCCCGATC 58.116 55.000 5.11 0.00 0.00 3.69
2810 3772 0.179018 GCTTTGGCCAGTATCCCGAT 60.179 55.000 5.11 0.00 0.00 4.18
2811 3773 1.223487 GCTTTGGCCAGTATCCCGA 59.777 57.895 5.11 0.00 0.00 5.14
2812 3774 3.827634 GCTTTGGCCAGTATCCCG 58.172 61.111 5.11 0.00 0.00 5.14
2834 3796 2.928116 GCTAACCGCTACGAATGAACTT 59.072 45.455 0.00 0.00 35.14 2.66
2852 3814 5.054477 GCAGAATAGGTGAAAATACCGCTA 58.946 41.667 0.00 0.00 45.56 4.26
2853 3815 3.877508 GCAGAATAGGTGAAAATACCGCT 59.122 43.478 0.00 0.00 45.56 5.52
2854 3816 3.877508 AGCAGAATAGGTGAAAATACCGC 59.122 43.478 0.00 0.00 45.56 5.68
2855 3817 5.584649 TCAAGCAGAATAGGTGAAAATACCG 59.415 40.000 0.00 0.00 45.56 4.02
2856 3818 7.283127 TGATCAAGCAGAATAGGTGAAAATACC 59.717 37.037 0.00 0.00 41.17 2.73
2858 3820 8.843262 CATGATCAAGCAGAATAGGTGAAAATA 58.157 33.333 0.00 0.00 0.00 1.40
2860 3822 6.095860 CCATGATCAAGCAGAATAGGTGAAAA 59.904 38.462 0.00 0.00 0.00 2.29
2861 3823 5.591472 CCATGATCAAGCAGAATAGGTGAAA 59.409 40.000 0.00 0.00 0.00 2.69
2862 3824 5.128205 CCATGATCAAGCAGAATAGGTGAA 58.872 41.667 0.00 0.00 0.00 3.18
2866 3828 2.818432 GGCCATGATCAAGCAGAATAGG 59.182 50.000 19.34 4.47 0.00 2.57
2867 3829 3.502595 CAGGCCATGATCAAGCAGAATAG 59.497 47.826 19.34 2.79 0.00 1.73
2868 3830 3.483421 CAGGCCATGATCAAGCAGAATA 58.517 45.455 19.34 0.00 0.00 1.75
2969 3940 5.048713 CCTTTCTCAACACATGTTTACCCTC 60.049 44.000 0.00 0.00 35.83 4.30
3010 3982 2.771943 CCTACCTGTCTGCTATGGGAAA 59.228 50.000 0.00 0.00 0.00 3.13
3023 3995 4.093743 CAAAATTAAAGGGCCCTACCTGT 58.906 43.478 28.96 5.71 40.87 4.00
3027 3999 4.606210 TCTCCAAAATTAAAGGGCCCTAC 58.394 43.478 28.96 0.00 0.00 3.18
3053 4029 1.130955 CAACACCGCATGAACTTTGC 58.869 50.000 0.00 0.00 36.74 3.68
3060 4036 1.383523 TTGACAACAACACCGCATGA 58.616 45.000 0.00 0.00 0.00 3.07
3115 4095 0.868406 CACCACTTCTTCCAAGCGAC 59.132 55.000 0.00 0.00 0.00 5.19
3198 4178 1.328279 CCACGCCCTTCCTTTTCTTT 58.672 50.000 0.00 0.00 0.00 2.52
3201 4181 1.538512 GTAACCACGCCCTTCCTTTTC 59.461 52.381 0.00 0.00 0.00 2.29
3202 4182 1.612676 GTAACCACGCCCTTCCTTTT 58.387 50.000 0.00 0.00 0.00 2.27
3203 4183 0.251033 GGTAACCACGCCCTTCCTTT 60.251 55.000 0.00 0.00 0.00 3.11
3204 4184 1.377612 GGTAACCACGCCCTTCCTT 59.622 57.895 0.00 0.00 0.00 3.36
3205 4185 2.951101 CGGTAACCACGCCCTTCCT 61.951 63.158 0.00 0.00 0.00 3.36
3206 4186 2.435410 CGGTAACCACGCCCTTCC 60.435 66.667 0.00 0.00 0.00 3.46
3207 4187 1.447314 CTCGGTAACCACGCCCTTC 60.447 63.158 0.00 0.00 0.00 3.46
3208 4188 1.474332 TTCTCGGTAACCACGCCCTT 61.474 55.000 0.00 0.00 0.00 3.95
3209 4189 1.474332 TTTCTCGGTAACCACGCCCT 61.474 55.000 0.00 0.00 0.00 5.19
3210 4190 0.392060 ATTTCTCGGTAACCACGCCC 60.392 55.000 0.00 0.00 0.00 6.13
3284 4268 0.535102 CACGGCAAAGAGACCACCTT 60.535 55.000 0.00 0.00 0.00 3.50
3286 4270 2.617274 GCACGGCAAAGAGACCACC 61.617 63.158 0.00 0.00 0.00 4.61
3348 4332 2.083774 CATAGGCTCGCAACCTTTTGA 58.916 47.619 0.00 0.00 38.81 2.69
3358 4342 0.249238 CTGTCTGGTCATAGGCTCGC 60.249 60.000 0.00 0.00 0.00 5.03
3360 4344 2.100584 CTGTCTGTCTGGTCATAGGCTC 59.899 54.545 0.00 0.00 0.00 4.70
3361 4345 2.106566 CTGTCTGTCTGGTCATAGGCT 58.893 52.381 0.00 0.00 0.00 4.58
3362 4346 1.137872 CCTGTCTGTCTGGTCATAGGC 59.862 57.143 0.00 0.00 0.00 3.93
3363 4347 1.137872 GCCTGTCTGTCTGGTCATAGG 59.862 57.143 0.00 0.00 37.45 2.57
3409 4393 3.803162 GCCTTGGCTCCCTCCTCC 61.803 72.222 4.11 0.00 0.00 4.30
3442 4426 0.744771 GGAACATGACGGCCTCCTTC 60.745 60.000 0.00 0.00 0.00 3.46
3446 4430 1.450312 CTGGGAACATGACGGCCTC 60.450 63.158 0.00 0.00 41.51 4.70
3458 4442 0.464373 GATTCGCTGATGCCTGGGAA 60.464 55.000 0.00 0.00 43.43 3.97
3459 4443 1.146930 GATTCGCTGATGCCTGGGA 59.853 57.895 0.00 0.00 35.36 4.37
3460 4444 1.895707 GGATTCGCTGATGCCTGGG 60.896 63.158 0.00 0.00 35.36 4.45
3461 4445 1.153107 TGGATTCGCTGATGCCTGG 60.153 57.895 0.00 0.00 35.36 4.45
3462 4446 1.442526 GGTGGATTCGCTGATGCCTG 61.443 60.000 0.00 0.00 35.36 4.85
3463 4447 1.153086 GGTGGATTCGCTGATGCCT 60.153 57.895 0.00 0.00 35.36 4.75
3464 4448 1.153086 AGGTGGATTCGCTGATGCC 60.153 57.895 0.00 0.00 35.36 4.40
3465 4449 2.020131 CAGGTGGATTCGCTGATGC 58.980 57.895 0.00 0.00 0.00 3.91
3466 4450 1.442526 GGCAGGTGGATTCGCTGATG 61.443 60.000 0.00 0.00 0.00 3.07
3467 4451 1.153086 GGCAGGTGGATTCGCTGAT 60.153 57.895 0.00 0.00 0.00 2.90
3468 4452 2.268920 GGCAGGTGGATTCGCTGA 59.731 61.111 0.00 0.00 0.00 4.26
3469 4453 2.825836 GGGCAGGTGGATTCGCTG 60.826 66.667 0.00 0.00 0.00 5.18
3470 4454 4.115199 GGGGCAGGTGGATTCGCT 62.115 66.667 0.00 0.00 0.00 4.93
3471 4455 4.424711 TGGGGCAGGTGGATTCGC 62.425 66.667 0.00 0.00 0.00 4.70
3472 4456 1.622607 TAGTGGGGCAGGTGGATTCG 61.623 60.000 0.00 0.00 0.00 3.34
3473 4457 0.623723 TTAGTGGGGCAGGTGGATTC 59.376 55.000 0.00 0.00 0.00 2.52
3474 4458 0.331616 GTTAGTGGGGCAGGTGGATT 59.668 55.000 0.00 0.00 0.00 3.01
3475 4459 0.844661 TGTTAGTGGGGCAGGTGGAT 60.845 55.000 0.00 0.00 0.00 3.41
3476 4460 1.462432 TGTTAGTGGGGCAGGTGGA 60.462 57.895 0.00 0.00 0.00 4.02
3477 4461 1.002134 CTGTTAGTGGGGCAGGTGG 60.002 63.158 0.00 0.00 0.00 4.61
3478 4462 1.675641 GCTGTTAGTGGGGCAGGTG 60.676 63.158 0.00 0.00 0.00 4.00
3479 4463 2.757077 GCTGTTAGTGGGGCAGGT 59.243 61.111 0.00 0.00 0.00 4.00
3480 4464 2.436646 CGCTGTTAGTGGGGCAGG 60.437 66.667 0.00 0.00 0.00 4.85
3481 4465 1.741770 GACGCTGTTAGTGGGGCAG 60.742 63.158 0.00 0.00 0.00 4.85
3482 4466 1.836999 ATGACGCTGTTAGTGGGGCA 61.837 55.000 0.00 0.00 39.68 5.36
3483 4467 1.078426 ATGACGCTGTTAGTGGGGC 60.078 57.895 0.00 0.00 0.00 5.80
3484 4468 0.462047 GGATGACGCTGTTAGTGGGG 60.462 60.000 0.00 0.00 0.00 4.96
3485 4469 0.249120 TGGATGACGCTGTTAGTGGG 59.751 55.000 0.00 0.00 0.00 4.61
3486 4470 2.093306 TTGGATGACGCTGTTAGTGG 57.907 50.000 0.00 0.00 0.00 4.00
3487 4471 2.282555 CGATTGGATGACGCTGTTAGTG 59.717 50.000 0.00 0.00 0.00 2.74
3488 4472 2.165641 TCGATTGGATGACGCTGTTAGT 59.834 45.455 0.00 0.00 0.00 2.24
3489 4473 2.809446 TCGATTGGATGACGCTGTTAG 58.191 47.619 0.00 0.00 0.00 2.34
3490 4474 2.951457 TCGATTGGATGACGCTGTTA 57.049 45.000 0.00 0.00 0.00 2.41
3491 4475 2.205074 GATCGATTGGATGACGCTGTT 58.795 47.619 0.00 0.00 34.82 3.16
3492 4476 1.858091 GATCGATTGGATGACGCTGT 58.142 50.000 0.00 0.00 34.82 4.40
3493 4477 0.780596 CGATCGATTGGATGACGCTG 59.219 55.000 10.26 0.00 34.82 5.18
3494 4478 0.941463 GCGATCGATTGGATGACGCT 60.941 55.000 21.57 0.00 42.13 5.07
3495 4479 1.488957 GCGATCGATTGGATGACGC 59.511 57.895 21.57 11.71 39.94 5.19
3496 4480 0.319040 AGGCGATCGATTGGATGACG 60.319 55.000 21.57 5.47 34.82 4.35
3497 4481 1.143305 CAGGCGATCGATTGGATGAC 58.857 55.000 21.57 0.00 34.82 3.06
3498 4482 0.752658 ACAGGCGATCGATTGGATGA 59.247 50.000 21.57 0.00 34.82 2.92
3499 4483 0.863799 CACAGGCGATCGATTGGATG 59.136 55.000 21.57 9.42 34.82 3.51
3500 4484 0.882042 GCACAGGCGATCGATTGGAT 60.882 55.000 21.57 0.00 38.35 3.41
3501 4485 1.521457 GCACAGGCGATCGATTGGA 60.521 57.895 21.57 0.00 0.00 3.53
3502 4486 2.537560 GGCACAGGCGATCGATTGG 61.538 63.158 21.57 7.13 42.47 3.16
3503 4487 3.017323 GGCACAGGCGATCGATTG 58.983 61.111 21.57 17.64 42.47 2.67
3512 4496 4.084888 GCGTACAACGGCACAGGC 62.085 66.667 1.25 0.00 42.82 4.85
3513 4497 3.773630 CGCGTACAACGGCACAGG 61.774 66.667 0.00 0.00 42.82 4.00
3514 4498 2.716828 CTCGCGTACAACGGCACAG 61.717 63.158 5.77 0.00 42.82 3.66
3515 4499 2.731721 CTCGCGTACAACGGCACA 60.732 61.111 5.77 0.00 42.82 4.57
3516 4500 2.713894 GACTCGCGTACAACGGCAC 61.714 63.158 5.77 0.00 42.82 5.01
3517 4501 2.429571 GACTCGCGTACAACGGCA 60.430 61.111 5.77 0.00 42.82 5.69
3518 4502 3.177249 GGACTCGCGTACAACGGC 61.177 66.667 5.77 0.00 42.82 5.68
3519 4503 0.665369 AAAGGACTCGCGTACAACGG 60.665 55.000 5.77 0.24 42.82 4.44
3520 4504 1.134226 AAAAGGACTCGCGTACAACG 58.866 50.000 5.77 0.00 45.88 4.10
3521 4505 3.737774 AGTAAAAAGGACTCGCGTACAAC 59.262 43.478 5.77 0.00 0.00 3.32
3522 4506 3.981211 AGTAAAAAGGACTCGCGTACAA 58.019 40.909 5.77 0.00 0.00 2.41
3523 4507 3.254166 AGAGTAAAAAGGACTCGCGTACA 59.746 43.478 5.77 0.00 46.58 2.90
3524 4508 3.607209 CAGAGTAAAAAGGACTCGCGTAC 59.393 47.826 5.77 0.00 46.58 3.67
3525 4509 3.829948 CAGAGTAAAAAGGACTCGCGTA 58.170 45.455 5.77 0.00 46.58 4.42
3526 4510 2.673833 CAGAGTAAAAAGGACTCGCGT 58.326 47.619 5.77 0.00 46.58 6.01
3527 4511 1.390463 GCAGAGTAAAAAGGACTCGCG 59.610 52.381 0.00 0.00 46.58 5.87
3528 4512 2.413837 TGCAGAGTAAAAAGGACTCGC 58.586 47.619 10.54 10.54 46.58 5.03
3529 4513 6.910536 AATATGCAGAGTAAAAAGGACTCG 57.089 37.500 0.00 0.00 46.58 4.18
3530 4514 7.988028 ACCTAATATGCAGAGTAAAAAGGACTC 59.012 37.037 2.56 0.00 43.12 3.36
3531 4515 7.862675 ACCTAATATGCAGAGTAAAAAGGACT 58.137 34.615 2.56 0.00 0.00 3.85
3532 4516 8.507524 AACCTAATATGCAGAGTAAAAAGGAC 57.492 34.615 2.56 0.00 0.00 3.85
3533 4517 8.956426 CAAACCTAATATGCAGAGTAAAAAGGA 58.044 33.333 2.56 0.00 0.00 3.36
3534 4518 8.739972 ACAAACCTAATATGCAGAGTAAAAAGG 58.260 33.333 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.