Multiple sequence alignment - TraesCS7B01G014000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G014000 chr7B 100.000 3468 0 0 642 4109 10558582 10562049 0.000000e+00 6405.0
1 TraesCS7B01G014000 chr7B 95.479 2079 34 18 831 2887 7717848 7715808 0.000000e+00 3264.0
2 TraesCS7B01G014000 chr7B 100.000 421 0 0 1 421 10557941 10558361 0.000000e+00 778.0
3 TraesCS7B01G014000 chr7B 99.525 421 2 0 1 421 7718701 7718281 0.000000e+00 767.0
4 TraesCS7B01G014000 chr7B 74.776 1118 189 51 1064 2159 10946528 10947574 2.280000e-112 416.0
5 TraesCS7B01G014000 chr7B 78.571 574 79 30 935 1503 9811325 9811859 5.090000e-89 339.0
6 TraesCS7B01G014000 chr7B 94.359 195 7 4 642 832 7718146 7717952 3.110000e-76 296.0
7 TraesCS7B01G014000 chr7B 94.479 163 8 1 2725 2887 7730560 7730399 2.450000e-62 250.0
8 TraesCS7B01G014000 chr7B 75.836 538 88 28 977 1498 16950875 16951386 6.870000e-58 235.0
9 TraesCS7B01G014000 chr7B 92.568 148 9 2 3051 3197 7715572 7715426 1.160000e-50 211.0
10 TraesCS7B01G014000 chr7B 81.818 242 39 3 1548 1788 10061409 10061646 9.010000e-47 198.0
11 TraesCS7B01G014000 chr7B 94.545 110 6 0 935 1044 10916482 10916591 1.960000e-38 171.0
12 TraesCS7B01G014000 chr7B 95.238 105 2 3 3275 3377 139855166 139855063 3.290000e-36 163.0
13 TraesCS7B01G014000 chr7B 94.444 54 3 0 2890 2943 7730370 7730317 2.630000e-12 84.2
14 TraesCS7B01G014000 chr7A 87.421 1749 92 52 642 2322 70890360 70888672 0.000000e+00 1893.0
15 TraesCS7B01G014000 chr7A 94.720 625 26 3 1098 1718 74642584 74643205 0.000000e+00 965.0
16 TraesCS7B01G014000 chr7A 89.250 800 35 22 2612 3377 70888423 70887641 0.000000e+00 953.0
17 TraesCS7B01G014000 chr7A 84.769 801 42 28 2609 3357 74644040 74644812 0.000000e+00 730.0
18 TraesCS7B01G014000 chr7A 87.479 607 38 13 1745 2322 74643203 74643800 0.000000e+00 665.0
19 TraesCS7B01G014000 chr7A 79.286 700 105 16 1093 1788 70898529 70897866 1.740000e-123 453.0
20 TraesCS7B01G014000 chr7A 74.359 1248 199 72 935 2159 74883351 74884500 1.770000e-113 420.0
21 TraesCS7B01G014000 chr7A 98.655 223 3 0 830 1052 74642366 74642588 2.980000e-106 396.0
22 TraesCS7B01G014000 chr7A 78.824 595 84 18 1094 1685 71114685 71114130 3.020000e-96 363.0
23 TraesCS7B01G014000 chr7A 76.511 579 82 30 935 1498 634363352 634362813 2.440000e-67 267.0
24 TraesCS7B01G014000 chr7A 74.609 575 102 33 1067 1631 77915175 77915715 3.220000e-51 213.0
25 TraesCS7B01G014000 chr7A 90.000 170 8 5 2725 2887 71112899 71112732 1.160000e-50 211.0
26 TraesCS7B01G014000 chr7A 75.964 441 76 20 1067 1498 77706765 77707184 2.500000e-47 200.0
27 TraesCS7B01G014000 chr7A 75.561 446 76 23 1065 1498 77731809 77732233 5.420000e-44 189.0
28 TraesCS7B01G014000 chr7A 82.645 121 9 8 1658 1772 70247211 70247097 3.380000e-16 97.1
29 TraesCS7B01G014000 chr7A 96.552 58 2 0 2886 2943 71112707 71112650 3.380000e-16 97.1
30 TraesCS7B01G014000 chr7A 90.909 66 5 1 642 707 74641673 74641737 2.030000e-13 87.9
31 TraesCS7B01G014000 chr7D 91.808 1294 51 19 1065 2322 66416504 66415230 0.000000e+00 1751.0
32 TraesCS7B01G014000 chr7D 95.619 662 26 1 1068 1729 68983535 68984193 0.000000e+00 1059.0
33 TraesCS7B01G014000 chr7D 88.235 714 51 16 3410 4109 519111587 519112281 0.000000e+00 822.0
34 TraesCS7B01G014000 chr7D 89.946 557 26 10 1774 2307 68984191 68984740 0.000000e+00 691.0
35 TraesCS7B01G014000 chr7D 84.021 751 47 30 2689 3377 68984946 68985685 0.000000e+00 654.0
36 TraesCS7B01G014000 chr7D 77.170 1244 159 63 1093 2322 66508477 66507345 3.510000e-170 608.0
37 TraesCS7B01G014000 chr7D 85.383 431 31 14 642 1048 68983121 68983543 6.350000e-113 418.0
38 TraesCS7B01G014000 chr7D 84.615 364 25 20 89 421 66440825 66440462 2.370000e-87 333.0
39 TraesCS7B01G014000 chr7D 92.558 215 9 3 2679 2887 66413278 66413065 6.680000e-78 302.0
40 TraesCS7B01G014000 chr7D 90.708 226 13 3 2725 2943 66506860 66506636 1.120000e-75 294.0
41 TraesCS7B01G014000 chr7D 78.702 493 67 28 908 1389 66548230 66547765 1.120000e-75 294.0
42 TraesCS7B01G014000 chr7D 85.115 262 39 0 1898 2159 69056143 69056404 6.770000e-68 268.0
43 TraesCS7B01G014000 chr7D 91.228 171 9 2 2722 2887 68930308 68930477 1.150000e-55 228.0
44 TraesCS7B01G014000 chr7D 85.484 186 21 5 2656 2836 69057067 69057251 5.420000e-44 189.0
45 TraesCS7B01G014000 chr7D 81.224 245 14 7 815 1028 66416746 66416503 7.060000e-38 169.0
46 TraesCS7B01G014000 chr7D 95.960 99 4 0 2890 2988 66413036 66412938 1.180000e-35 161.0
47 TraesCS7B01G014000 chr7D 88.356 146 2 1 2320 2465 68984785 68984915 1.180000e-35 161.0
48 TraesCS7B01G014000 chr7D 78.367 245 37 5 1556 1788 66547631 66547391 1.190000e-30 145.0
49 TraesCS7B01G014000 chr7D 97.403 77 2 0 2612 2688 66414698 66414622 9.270000e-27 132.0
50 TraesCS7B01G014000 chr7D 84.722 144 8 3 1656 1788 68898062 68898202 9.270000e-27 132.0
51 TraesCS7B01G014000 chr7D 85.593 118 8 6 1658 1772 65823922 65823811 9.330000e-22 115.0
52 TraesCS7B01G014000 chr7D 88.172 93 6 4 2232 2322 66415028 66414939 5.620000e-19 106.0
53 TraesCS7B01G014000 chr7D 98.077 52 1 0 2892 2943 68930561 68930612 1.570000e-14 91.6
54 TraesCS7B01G014000 chr7D 98.000 50 1 0 2892 2941 66506627 66506578 2.030000e-13 87.9
55 TraesCS7B01G014000 chr7D 95.455 44 2 0 2618 2661 68984909 68984952 2.050000e-08 71.3
56 TraesCS7B01G014000 chr6D 89.250 707 48 7 3410 4109 85552976 85552291 0.000000e+00 859.0
57 TraesCS7B01G014000 chr3B 94.464 560 22 5 3414 3966 673834392 673834949 0.000000e+00 854.0
58 TraesCS7B01G014000 chr2B 93.426 502 15 8 3410 3902 765196255 765195763 0.000000e+00 728.0
59 TraesCS7B01G014000 chr2B 80.332 361 50 13 1809 2159 135795628 135795977 1.900000e-63 254.0
60 TraesCS7B01G014000 chr2B 78.378 148 26 4 1493 1637 55855442 55855298 1.570000e-14 91.6
61 TraesCS7B01G014000 chr6B 85.915 497 54 10 3409 3890 664414249 664414744 2.190000e-142 516.0
62 TraesCS7B01G014000 chr6B 80.686 554 78 25 3410 3944 85712277 85712820 1.780000e-108 403.0
63 TraesCS7B01G014000 chrUn 83.365 523 65 19 3410 3918 63244565 63245079 8.050000e-127 464.0
64 TraesCS7B01G014000 chr5B 83.300 497 66 9 3410 3890 491061508 491061013 3.770000e-120 442.0
65 TraesCS7B01G014000 chr2D 84.513 452 56 11 3410 3851 564923628 564924075 6.310000e-118 435.0
66 TraesCS7B01G014000 chr2D 85.679 405 42 13 3716 4109 564923856 564924255 2.960000e-111 412.0
67 TraesCS7B01G014000 chr2D 79.054 148 25 4 1493 1637 33373751 33373607 3.380000e-16 97.1
68 TraesCS7B01G014000 chr2D 77.703 148 27 6 1493 1637 33580694 33580550 7.320000e-13 86.1
69 TraesCS7B01G014000 chr3A 83.744 406 49 17 3716 4109 598993831 598994231 6.490000e-98 368.0
70 TraesCS7B01G014000 chr2A 80.488 123 18 4 1493 1612 36411378 36411259 5.660000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G014000 chr7B 10557941 10562049 4108 False 3591.500000 6405 100.000000 1 4109 2 chr7B.!!$F6 4108
1 TraesCS7B01G014000 chr7B 7715426 7718701 3275 True 1134.500000 3264 95.482750 1 3197 4 chr7B.!!$R2 3196
2 TraesCS7B01G014000 chr7B 10946528 10947574 1046 False 416.000000 416 74.776000 1064 2159 1 chr7B.!!$F4 1095
3 TraesCS7B01G014000 chr7B 9811325 9811859 534 False 339.000000 339 78.571000 935 1503 1 chr7B.!!$F1 568
4 TraesCS7B01G014000 chr7B 16950875 16951386 511 False 235.000000 235 75.836000 977 1498 1 chr7B.!!$F5 521
5 TraesCS7B01G014000 chr7A 70887641 70890360 2719 True 1423.000000 1893 88.335500 642 3377 2 chr7A.!!$R4 2735
6 TraesCS7B01G014000 chr7A 74641673 74644812 3139 False 568.780000 965 91.306400 642 3357 5 chr7A.!!$F5 2715
7 TraesCS7B01G014000 chr7A 70897866 70898529 663 True 453.000000 453 79.286000 1093 1788 1 chr7A.!!$R2 695
8 TraesCS7B01G014000 chr7A 74883351 74884500 1149 False 420.000000 420 74.359000 935 2159 1 chr7A.!!$F1 1224
9 TraesCS7B01G014000 chr7A 634362813 634363352 539 True 267.000000 267 76.511000 935 1498 1 chr7A.!!$R3 563
10 TraesCS7B01G014000 chr7A 71112650 71114685 2035 True 223.700000 363 88.458667 1094 2943 3 chr7A.!!$R5 1849
11 TraesCS7B01G014000 chr7A 77915175 77915715 540 False 213.000000 213 74.609000 1067 1631 1 chr7A.!!$F4 564
12 TraesCS7B01G014000 chr7D 519111587 519112281 694 False 822.000000 822 88.235000 3410 4109 1 chr7D.!!$F2 699
13 TraesCS7B01G014000 chr7D 68983121 68985685 2564 False 509.050000 1059 89.796667 642 3377 6 chr7D.!!$F4 2735
14 TraesCS7B01G014000 chr7D 66412938 66416746 3808 True 436.833333 1751 91.187500 815 2988 6 chr7D.!!$R3 2173
15 TraesCS7B01G014000 chr7D 66506578 66508477 1899 True 329.966667 608 88.626000 1093 2943 3 chr7D.!!$R4 1850
16 TraesCS7B01G014000 chr7D 69056143 69057251 1108 False 228.500000 268 85.299500 1898 2836 2 chr7D.!!$F5 938
17 TraesCS7B01G014000 chr7D 66547391 66548230 839 True 219.500000 294 78.534500 908 1788 2 chr7D.!!$R5 880
18 TraesCS7B01G014000 chr6D 85552291 85552976 685 True 859.000000 859 89.250000 3410 4109 1 chr6D.!!$R1 699
19 TraesCS7B01G014000 chr3B 673834392 673834949 557 False 854.000000 854 94.464000 3414 3966 1 chr3B.!!$F1 552
20 TraesCS7B01G014000 chr6B 85712277 85712820 543 False 403.000000 403 80.686000 3410 3944 1 chr6B.!!$F1 534
21 TraesCS7B01G014000 chrUn 63244565 63245079 514 False 464.000000 464 83.365000 3410 3918 1 chrUn.!!$F1 508
22 TraesCS7B01G014000 chr2D 564923628 564924255 627 False 423.500000 435 85.096000 3410 4109 2 chr2D.!!$F1 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 709 6.890663 TTTATTGAGCACATAAAAGCATGC 57.109 33.333 10.51 10.51 38.39 4.06 F
1065 1662 1.528309 CTCTCTCTCCCTCTCGCCC 60.528 68.421 0.00 0.00 0.00 6.13 F
1882 2654 0.108804 TTCACCCGAAGAGTCATCGC 60.109 55.000 12.14 0.00 38.93 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1847 2618 2.508526 GTGAAGGGAATCTGCAGTTGT 58.491 47.619 14.67 0.0 29.94 3.32 R
2864 6027 0.744281 ACAACTTCTGGGTTTTGCCG 59.256 50.000 0.00 0.0 38.44 5.69 R
3377 6683 0.033504 GAACAGGAGTGGCGTGAGAA 59.966 55.000 0.00 0.0 36.29 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 8.734386 ACAAACATTCTTAGAGGACATGATTTC 58.266 33.333 0.00 0.00 0.00 2.17
127 128 7.814587 CACTTAATTTCTTCCTTGACATTTCCC 59.185 37.037 0.00 0.00 0.00 3.97
707 709 6.890663 TTTATTGAGCACATAAAAGCATGC 57.109 33.333 10.51 10.51 38.39 4.06
1065 1662 1.528309 CTCTCTCTCCCTCTCGCCC 60.528 68.421 0.00 0.00 0.00 6.13
1687 2400 1.679680 CATGCCCGCTTCTTGATTGAT 59.320 47.619 0.00 0.00 0.00 2.57
1828 2594 4.142038 TGATTTGATCTCCTGGCATCATG 58.858 43.478 8.47 0.00 0.00 3.07
1829 2595 1.977056 TTGATCTCCTGGCATCATGC 58.023 50.000 0.00 0.00 44.08 4.06
1847 2618 3.639716 TGCATGATGTTTCTTTGCGAA 57.360 38.095 0.00 0.00 35.65 4.70
1882 2654 0.108804 TTCACCCGAAGAGTCATCGC 60.109 55.000 12.14 0.00 38.93 4.58
2450 3767 7.669438 CATTACATGGAAATTAGTTTCTGCG 57.331 36.000 10.17 2.55 42.66 5.18
2502 3822 1.273606 TGCCTGTGTAGTCTGAAGCTC 59.726 52.381 0.00 0.00 0.00 4.09
2590 3942 6.668541 TGAGCTTCACATAGAAAATACTGC 57.331 37.500 0.00 0.00 35.40 4.40
2864 6027 3.350219 TTGCAGTGAGATAGGGGTTTC 57.650 47.619 0.00 0.00 0.00 2.78
2988 6218 3.988517 GTCTGTAGTGGTTGCACTCTTAC 59.011 47.826 0.00 0.00 36.68 2.34
2989 6219 3.639561 TCTGTAGTGGTTGCACTCTTACA 59.360 43.478 0.00 0.00 36.68 2.41
2990 6220 3.990092 TGTAGTGGTTGCACTCTTACAG 58.010 45.455 0.00 0.00 36.68 2.74
2991 6221 3.386726 TGTAGTGGTTGCACTCTTACAGT 59.613 43.478 0.00 0.00 36.68 3.55
2992 6222 3.560636 AGTGGTTGCACTCTTACAGTT 57.439 42.857 0.00 0.00 30.26 3.16
2993 6223 3.886123 AGTGGTTGCACTCTTACAGTTT 58.114 40.909 0.00 0.00 30.26 2.66
2995 6225 3.625764 GTGGTTGCACTCTTACAGTTTCA 59.374 43.478 0.00 0.00 30.26 2.69
3048 6306 5.502058 GCGTGTCTCTTTGATGAATCATCTG 60.502 44.000 22.10 13.03 41.06 2.90
3127 6411 4.141620 ACACATTCAGAGTGAGTTCAACCT 60.142 41.667 0.00 0.00 40.16 3.50
3128 6412 4.212847 CACATTCAGAGTGAGTTCAACCTG 59.787 45.833 0.00 5.96 39.30 4.00
3131 6415 3.566351 TCAGAGTGAGTTCAACCTGAGA 58.434 45.455 9.34 0.00 34.15 3.27
3133 6417 4.590647 TCAGAGTGAGTTCAACCTGAGAAT 59.409 41.667 9.34 0.00 34.15 2.40
3136 6420 3.392616 AGTGAGTTCAACCTGAGAATGGT 59.607 43.478 0.00 0.00 39.91 3.55
3230 6516 3.374367 GGGGCGAACTGAGAATAGTTTTC 59.626 47.826 0.00 0.00 40.78 2.29
3231 6517 4.254492 GGGCGAACTGAGAATAGTTTTCT 58.746 43.478 0.00 0.00 40.78 2.52
3232 6518 4.695928 GGGCGAACTGAGAATAGTTTTCTT 59.304 41.667 0.00 0.00 40.78 2.52
3233 6519 5.181433 GGGCGAACTGAGAATAGTTTTCTTT 59.819 40.000 0.00 0.00 40.78 2.52
3262 6567 4.318332 CAACTTCTGAATGGACTACTGCA 58.682 43.478 0.00 0.00 0.00 4.41
3377 6683 3.322466 CACCGAGGGTTGAGGCCT 61.322 66.667 3.86 3.86 31.02 5.19
3378 6684 2.529389 ACCGAGGGTTGAGGCCTT 60.529 61.111 6.77 0.00 27.29 4.35
3379 6685 2.269241 CCGAGGGTTGAGGCCTTC 59.731 66.667 6.77 0.00 0.00 3.46
3380 6686 2.294078 CCGAGGGTTGAGGCCTTCT 61.294 63.158 6.77 0.00 33.06 2.85
3381 6687 1.219393 CGAGGGTTGAGGCCTTCTC 59.781 63.158 6.77 8.66 42.74 2.87
3387 6693 2.922503 TGAGGCCTTCTCACGCCA 60.923 61.111 6.77 0.00 46.71 5.69
3388 6694 3.240134 TGAGGCCTTCTCACGCCAC 62.240 63.158 6.77 0.00 46.71 5.01
3390 6696 2.435059 GGCCTTCTCACGCCACTC 60.435 66.667 0.00 0.00 45.01 3.51
3391 6697 2.435059 GCCTTCTCACGCCACTCC 60.435 66.667 0.00 0.00 0.00 3.85
3392 6698 2.948720 GCCTTCTCACGCCACTCCT 61.949 63.158 0.00 0.00 0.00 3.69
3393 6699 1.079543 CCTTCTCACGCCACTCCTG 60.080 63.158 0.00 0.00 0.00 3.86
3394 6700 1.668294 CTTCTCACGCCACTCCTGT 59.332 57.895 0.00 0.00 0.00 4.00
3395 6701 0.034059 CTTCTCACGCCACTCCTGTT 59.966 55.000 0.00 0.00 0.00 3.16
3396 6702 0.033504 TTCTCACGCCACTCCTGTTC 59.966 55.000 0.00 0.00 0.00 3.18
3397 6703 1.374758 CTCACGCCACTCCTGTTCC 60.375 63.158 0.00 0.00 0.00 3.62
3398 6704 2.358737 CACGCCACTCCTGTTCCC 60.359 66.667 0.00 0.00 0.00 3.97
3399 6705 2.526873 ACGCCACTCCTGTTCCCT 60.527 61.111 0.00 0.00 0.00 4.20
3400 6706 2.046892 CGCCACTCCTGTTCCCTG 60.047 66.667 0.00 0.00 0.00 4.45
3401 6707 2.360475 GCCACTCCTGTTCCCTGC 60.360 66.667 0.00 0.00 0.00 4.85
3402 6708 2.046892 CCACTCCTGTTCCCTGCG 60.047 66.667 0.00 0.00 0.00 5.18
3403 6709 2.743718 CACTCCTGTTCCCTGCGT 59.256 61.111 0.00 0.00 0.00 5.24
3404 6710 1.541310 CCACTCCTGTTCCCTGCGTA 61.541 60.000 0.00 0.00 0.00 4.42
3405 6711 0.108615 CACTCCTGTTCCCTGCGTAG 60.109 60.000 0.00 0.00 0.00 3.51
3406 6712 1.258445 ACTCCTGTTCCCTGCGTAGG 61.258 60.000 13.36 13.36 44.18 3.18
3407 6713 1.229082 TCCTGTTCCCTGCGTAGGT 60.229 57.895 18.86 0.00 42.96 3.08
3408 6714 1.218316 CCTGTTCCCTGCGTAGGTC 59.782 63.158 18.86 8.95 42.96 3.85
3519 6826 0.038159 CTCGCTCCCTTTCTGTTCGT 60.038 55.000 0.00 0.00 0.00 3.85
3563 6870 0.806102 GACTCGCATCGCTGGCTTTA 60.806 55.000 0.00 0.00 0.00 1.85
3630 6940 7.371936 TCCGGTTTTTACAAGTTTGAATATGG 58.628 34.615 0.00 0.00 0.00 2.74
3975 7402 7.250569 TGTTCAGAAGTTCATTCACTTTCAAC 58.749 34.615 5.50 0.00 40.67 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 9.930693 AAGGAAGAAATTAAGTGTAGAGTGTAG 57.069 33.333 0.00 0.00 0.00 2.74
127 128 6.506500 AGATCTTTTGCTCTACCAACATTG 57.493 37.500 0.00 0.00 0.00 2.82
1389 2045 4.712337 ACCTCCTCTTGATCATCGTAGTTT 59.288 41.667 0.00 0.00 0.00 2.66
1687 2400 2.523179 TCGCGCAAATTCGACAAGA 58.477 47.368 8.75 0.00 0.00 3.02
1828 2594 3.307674 TGTTCGCAAAGAAACATCATGC 58.692 40.909 0.00 0.00 41.10 4.06
1829 2595 4.977963 AGTTGTTCGCAAAGAAACATCATG 59.022 37.500 0.00 0.00 41.10 3.07
1830 2596 4.977963 CAGTTGTTCGCAAAGAAACATCAT 59.022 37.500 0.00 0.00 41.10 2.45
1831 2597 4.350346 CAGTTGTTCGCAAAGAAACATCA 58.650 39.130 0.00 0.00 41.10 3.07
1847 2618 2.508526 GTGAAGGGAATCTGCAGTTGT 58.491 47.619 14.67 0.00 29.94 3.32
2228 3026 7.734538 AACAAATTCAGTACACTGTTTTTCG 57.265 32.000 9.11 7.81 44.12 3.46
2450 3767 3.559655 TCAGACAACACTGTAATGTGCAC 59.440 43.478 10.75 10.75 41.30 4.57
2605 3957 9.778993 CCTGAAAACAATGTAGAAACTGATATG 57.221 33.333 0.00 0.00 0.00 1.78
2606 3958 9.520515 ACCTGAAAACAATGTAGAAACTGATAT 57.479 29.630 0.00 0.00 0.00 1.63
2607 3959 8.918202 ACCTGAAAACAATGTAGAAACTGATA 57.082 30.769 0.00 0.00 0.00 2.15
2610 4019 8.594687 CAAAACCTGAAAACAATGTAGAAACTG 58.405 33.333 0.00 0.00 0.00 3.16
2749 5906 2.860690 TACACTGCATCGACGTCCGC 62.861 60.000 10.58 10.98 38.37 5.54
2864 6027 0.744281 ACAACTTCTGGGTTTTGCCG 59.256 50.000 0.00 0.00 38.44 5.69
2988 6218 4.190001 ACATGCTCTGCTATCTGAAACTG 58.810 43.478 0.00 0.00 0.00 3.16
2989 6219 4.484537 ACATGCTCTGCTATCTGAAACT 57.515 40.909 0.00 0.00 0.00 2.66
2990 6220 5.448360 GGAAACATGCTCTGCTATCTGAAAC 60.448 44.000 0.00 0.00 0.00 2.78
2991 6221 4.637534 GGAAACATGCTCTGCTATCTGAAA 59.362 41.667 0.00 0.00 0.00 2.69
2992 6222 4.194640 GGAAACATGCTCTGCTATCTGAA 58.805 43.478 0.00 0.00 0.00 3.02
2993 6223 3.198417 TGGAAACATGCTCTGCTATCTGA 59.802 43.478 0.00 0.00 33.40 3.27
2995 6225 3.806380 CTGGAAACATGCTCTGCTATCT 58.194 45.455 0.00 0.00 41.51 1.98
3028 6286 5.879223 ACACCAGATGATTCATCAAAGAGAC 59.121 40.000 24.71 0.28 42.72 3.36
3136 6420 3.153919 GCACATAACCAAGACAGGGAAA 58.846 45.455 0.00 0.00 0.00 3.13
3233 6519 6.959639 AGTCCATTCAGAAGTTGCTAAAAA 57.040 33.333 0.00 0.00 0.00 1.94
3377 6683 0.033504 GAACAGGAGTGGCGTGAGAA 59.966 55.000 0.00 0.00 36.29 2.87
3378 6684 1.666011 GAACAGGAGTGGCGTGAGA 59.334 57.895 0.00 0.00 36.29 3.27
3379 6685 1.374758 GGAACAGGAGTGGCGTGAG 60.375 63.158 0.00 0.00 36.29 3.51
3380 6686 2.741092 GGAACAGGAGTGGCGTGA 59.259 61.111 0.00 0.00 36.29 4.35
3381 6687 2.358737 GGGAACAGGAGTGGCGTG 60.359 66.667 0.00 0.00 38.32 5.34
3382 6688 2.526873 AGGGAACAGGAGTGGCGT 60.527 61.111 0.00 0.00 0.00 5.68
3383 6689 2.046892 CAGGGAACAGGAGTGGCG 60.047 66.667 0.00 0.00 0.00 5.69
3384 6690 2.360475 GCAGGGAACAGGAGTGGC 60.360 66.667 0.00 0.00 0.00 5.01
3385 6691 1.541310 TACGCAGGGAACAGGAGTGG 61.541 60.000 0.00 0.00 0.00 4.00
3386 6692 0.108615 CTACGCAGGGAACAGGAGTG 60.109 60.000 0.00 0.00 0.00 3.51
3387 6693 1.258445 CCTACGCAGGGAACAGGAGT 61.258 60.000 0.00 0.00 38.41 3.85
3388 6694 1.517832 CCTACGCAGGGAACAGGAG 59.482 63.158 0.00 0.00 38.41 3.69
3389 6695 3.708210 CCTACGCAGGGAACAGGA 58.292 61.111 0.00 0.00 38.41 3.86
3402 6708 1.461911 AATAGGAGCGCCCGACCTAC 61.462 60.000 17.84 0.00 38.79 3.18
3403 6709 1.152610 AATAGGAGCGCCCGACCTA 60.153 57.895 17.81 17.81 40.87 3.08
3404 6710 2.444140 AATAGGAGCGCCCGACCT 60.444 61.111 2.29 11.00 40.87 3.85
3405 6711 2.280186 CAATAGGAGCGCCCGACC 60.280 66.667 2.29 2.72 40.87 4.79
3406 6712 2.280186 CCAATAGGAGCGCCCGAC 60.280 66.667 2.29 0.00 40.87 4.79
3407 6713 3.546543 CCCAATAGGAGCGCCCGA 61.547 66.667 2.29 1.29 40.87 5.14
3436 6742 2.030562 CGCCAGTTCTCCAACGGT 59.969 61.111 0.00 0.00 37.61 4.83
3475 6781 1.939934 CGATCTTTTAATGGGCTGCGA 59.060 47.619 0.00 0.00 0.00 5.10
3519 6826 0.246360 TTCTTCATCCAGCGAGCGAA 59.754 50.000 0.00 0.00 0.00 4.70
3656 6986 9.285770 GTTTCTTGTAATCGTTGAACTTTTCTT 57.714 29.630 0.00 0.00 0.00 2.52
3657 6987 8.674607 AGTTTCTTGTAATCGTTGAACTTTTCT 58.325 29.630 0.00 0.00 0.00 2.52
3658 6988 8.836959 AGTTTCTTGTAATCGTTGAACTTTTC 57.163 30.769 0.00 0.00 0.00 2.29
3659 6989 9.285770 GAAGTTTCTTGTAATCGTTGAACTTTT 57.714 29.630 0.00 0.00 0.00 2.27
3660 6990 8.455682 TGAAGTTTCTTGTAATCGTTGAACTTT 58.544 29.630 0.00 0.00 0.00 2.66
3661 6991 7.908601 GTGAAGTTTCTTGTAATCGTTGAACTT 59.091 33.333 0.00 0.00 0.00 2.66
3662 6992 7.065324 TGTGAAGTTTCTTGTAATCGTTGAACT 59.935 33.333 0.00 0.00 0.00 3.01
3668 6998 8.070171 CAGATTTGTGAAGTTTCTTGTAATCGT 58.930 33.333 0.00 0.00 0.00 3.73
3739 7073 8.955061 ATGAACTTTTGTTAATCTGATGAACG 57.045 30.769 12.18 2.21 43.66 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.