Multiple sequence alignment - TraesCS7B01G013800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G013800 chr7B 100.000 4263 0 0 1 4263 10207392 10211654 0.000000e+00 7873.0
1 TraesCS7B01G013800 chr7B 89.250 1014 58 17 2374 3359 9812737 9813727 0.000000e+00 1221.0
2 TraesCS7B01G013800 chr7B 92.857 826 27 11 866 1659 9811228 9812053 0.000000e+00 1170.0
3 TraesCS7B01G013800 chr7B 92.807 570 38 2 1044 1610 10102014 10102583 0.000000e+00 822.0
4 TraesCS7B01G013800 chr7B 85.947 676 46 28 1711 2371 10102584 10103225 0.000000e+00 676.0
5 TraesCS7B01G013800 chr7B 93.231 458 30 1 3389 3846 9813727 9814183 0.000000e+00 673.0
6 TraesCS7B01G013800 chr7B 96.685 362 12 0 1792 2153 9812151 9812512 1.700000e-168 603.0
7 TraesCS7B01G013800 chr7B 81.000 700 70 26 2695 3390 10103319 10103959 8.230000e-137 497.0
8 TraesCS7B01G013800 chr7B 89.048 210 10 4 3649 3846 10104121 10104329 9.150000e-62 248.0
9 TraesCS7B01G013800 chr7B 87.330 221 21 5 3438 3652 10103955 10104174 3.290000e-61 246.0
10 TraesCS7B01G013800 chr7B 96.842 95 3 0 2277 2371 9812608 9812702 4.410000e-35 159.0
11 TraesCS7B01G013800 chr7B 94.595 37 2 0 1712 1748 9812102 9812138 1.660000e-04 58.4
12 TraesCS7B01G013800 chr7B 100.000 28 0 0 1805 1832 10640110 10640137 8.000000e-03 52.8
13 TraesCS7B01G013800 chr7D 92.393 1262 73 13 2364 3614 66516151 66514902 0.000000e+00 1777.0
14 TraesCS7B01G013800 chr7D 94.362 745 35 6 866 1610 68801450 68802187 0.000000e+00 1136.0
15 TraesCS7B01G013800 chr7D 90.023 882 47 14 857 1704 66538916 66538042 0.000000e+00 1103.0
16 TraesCS7B01G013800 chr7D 91.108 776 62 4 841 1610 66517367 66516593 0.000000e+00 1044.0
17 TraesCS7B01G013800 chr7D 84.891 920 75 22 2479 3390 68921189 68922052 0.000000e+00 870.0
18 TraesCS7B01G013800 chr7D 92.833 600 33 7 2666 3260 68802957 68803551 0.000000e+00 861.0
19 TraesCS7B01G013800 chr7D 87.111 675 35 27 1711 2364 68802188 68802831 0.000000e+00 717.0
20 TraesCS7B01G013800 chr7D 93.382 408 24 1 1203 1607 68918930 68919337 6.100000e-168 601.0
21 TraesCS7B01G013800 chr7D 84.111 686 40 37 1711 2371 66516592 66515951 2.190000e-167 599.0
22 TraesCS7B01G013800 chr7D 95.480 354 15 1 1799 2152 68919464 68919816 8.000000e-157 564.0
23 TraesCS7B01G013800 chr7D 96.084 332 13 0 3321 3652 68803677 68804008 3.750000e-150 542.0
24 TraesCS7B01G013800 chr7D 86.598 388 30 11 845 1212 68917368 68917753 3.970000e-110 409.0
25 TraesCS7B01G013800 chr7D 82.143 448 36 17 939 1355 69019083 69019517 1.130000e-90 344.0
26 TraesCS7B01G013800 chr7D 87.719 228 15 3 3631 3846 68803937 68804163 1.970000e-63 254.0
27 TraesCS7B01G013800 chr7D 86.667 210 12 5 3649 3846 68922220 68922425 7.180000e-53 219.0
28 TraesCS7B01G013800 chr7D 89.222 167 14 3 3681 3846 66514935 66514772 5.590000e-49 206.0
29 TraesCS7B01G013800 chr7D 76.872 454 50 29 2947 3353 68911256 68911701 5.590000e-49 206.0
30 TraesCS7B01G013800 chr7D 77.852 298 48 11 2924 3212 66545088 66544800 7.330000e-38 169.0
31 TraesCS7B01G013800 chr7D 87.500 144 16 2 3248 3390 68804759 68804901 9.480000e-37 165.0
32 TraesCS7B01G013800 chr7D 98.333 60 1 0 3425 3484 68911739 68911798 5.830000e-19 106.0
33 TraesCS7B01G013800 chr7D 86.517 89 10 2 3248 3335 68803571 68803658 3.510000e-16 97.1
34 TraesCS7B01G013800 chr7D 100.000 36 0 0 842 877 68801376 68801411 2.750000e-07 67.6
35 TraesCS7B01G013800 chr7D 92.857 42 3 0 2725 2766 66515225 66515184 1.280000e-05 62.1
36 TraesCS7B01G013800 chr7A 86.911 1528 106 40 909 2371 74601049 74602547 0.000000e+00 1628.0
37 TraesCS7B01G013800 chr7A 90.056 885 46 9 2371 3250 74602366 74603213 0.000000e+00 1109.0
38 TraesCS7B01G013800 chr7A 88.214 823 36 15 866 1653 71134970 71134174 0.000000e+00 926.0
39 TraesCS7B01G013800 chr7A 87.291 598 35 22 1792 2371 71134125 71133551 0.000000e+00 645.0
40 TraesCS7B01G013800 chr7A 87.965 565 23 6 3295 3846 74603436 74603968 3.620000e-175 625.0
41 TraesCS7B01G013800 chr7A 85.236 508 39 17 2883 3389 71121118 71120646 1.380000e-134 490.0
42 TraesCS7B01G013800 chr7A 83.984 487 28 12 2367 2848 71133744 71133303 5.100000e-114 422.0
43 TraesCS7B01G013800 chr7A 88.128 219 20 5 3438 3651 71120649 71120432 5.470000e-64 255.0
44 TraesCS7B01G013800 chr7A 88.038 209 9 6 3649 3846 71120484 71120281 2.560000e-57 233.0
45 TraesCS7B01G013800 chr7A 89.362 141 5 1 3295 3435 74603295 74603425 7.330000e-38 169.0
46 TraesCS7B01G013800 chr7A 77.536 276 42 11 2367 2636 74594637 74594898 9.550000e-32 148.0
47 TraesCS7B01G013800 chr7A 80.460 174 17 8 3649 3811 74594662 74594829 2.690000e-22 117.0
48 TraesCS7B01G013800 chr1D 87.195 1148 98 27 2367 3502 486925256 486924146 0.000000e+00 1260.0
49 TraesCS7B01G013800 chr1D 84.237 1383 117 59 1059 2371 486926412 486925061 0.000000e+00 1253.0
50 TraesCS7B01G013800 chr1D 89.548 354 23 4 3506 3846 486924037 486923685 1.820000e-118 436.0
51 TraesCS7B01G013800 chr1D 94.059 101 5 1 948 1048 486926560 486926461 7.380000e-33 152.0
52 TraesCS7B01G013800 chr1D 91.250 80 5 2 843 920 486926642 486926563 1.620000e-19 108.0
53 TraesCS7B01G013800 chr1B 83.351 949 92 29 2374 3311 678115099 678114206 0.000000e+00 817.0
54 TraesCS7B01G013800 chr1B 88.390 646 46 13 1059 1686 678116258 678115624 0.000000e+00 750.0
55 TraesCS7B01G013800 chr1B 82.566 608 58 27 1789 2374 678115503 678114922 3.830000e-135 492.0
56 TraesCS7B01G013800 chr1B 78.312 770 94 33 65 806 536598531 536599255 3.050000e-116 429.0
57 TraesCS7B01G013800 chr1B 86.124 418 30 13 3356 3749 678114269 678113856 3.940000e-115 425.0
58 TraesCS7B01G013800 chr1B 75.750 800 99 40 75 823 373321369 373320614 8.900000e-82 315.0
59 TraesCS7B01G013800 chr1B 89.671 213 14 4 843 1048 678116518 678116307 9.090000e-67 265.0
60 TraesCS7B01G013800 chrUn 95.704 419 16 2 3846 4263 60486657 60487074 0.000000e+00 673.0
61 TraesCS7B01G013800 chrUn 77.472 799 111 37 71 823 92638507 92639282 8.530000e-112 414.0
62 TraesCS7B01G013800 chr3D 94.286 420 22 2 3846 4263 459155510 459155929 3.590000e-180 641.0
63 TraesCS7B01G013800 chr3D 92.619 420 29 2 3846 4263 456569957 456570376 1.700000e-168 603.0
64 TraesCS7B01G013800 chr3D 77.485 342 53 20 2051 2371 23498681 23499019 2.620000e-42 183.0
65 TraesCS7B01G013800 chr5D 93.810 420 24 2 3846 4263 496073162 496073581 7.780000e-177 630.0
66 TraesCS7B01G013800 chr5D 87.788 434 42 9 3834 4263 346660775 346661201 8.230000e-137 497.0
67 TraesCS7B01G013800 chr5D 85.410 329 29 7 2367 2692 235711129 235710817 1.480000e-84 324.0
68 TraesCS7B01G013800 chr5D 80.747 348 41 17 2051 2374 235711288 235710943 9.150000e-62 248.0
69 TraesCS7B01G013800 chr3B 81.807 808 86 29 64 825 387437966 387438758 4.680000e-174 621.0
70 TraesCS7B01G013800 chr6D 92.381 420 30 2 3846 4263 336213141 336213560 7.890000e-167 597.0
71 TraesCS7B01G013800 chr6D 80.682 792 91 28 76 823 38625129 38625902 3.720000e-155 558.0
72 TraesCS7B01G013800 chr6D 79.608 510 62 24 78 563 52699134 52698643 1.140000e-85 327.0
73 TraesCS7B01G013800 chr6D 84.802 329 31 6 2367 2692 242423285 242422973 3.200000e-81 313.0
74 TraesCS7B01G013800 chr4A 92.162 421 29 4 3846 4263 563252220 563252639 3.670000e-165 592.0
75 TraesCS7B01G013800 chr4A 91.211 421 33 4 3846 4263 563291904 563292323 1.720000e-158 569.0
76 TraesCS7B01G013800 chr4A 84.568 324 39 11 75 391 664181632 664181313 1.150000e-80 311.0
77 TraesCS7B01G013800 chr4A 86.486 222 14 5 3580 3786 297114445 297114665 3.320000e-56 230.0
78 TraesCS7B01G013800 chr4D 80.909 770 104 28 75 823 363572972 363573719 6.190000e-158 568.0
79 TraesCS7B01G013800 chr4D 79.130 345 45 17 2051 2371 435253312 435253653 3.340000e-51 213.0
80 TraesCS7B01G013800 chr2D 80.832 793 93 22 75 823 580399298 580398521 6.190000e-158 568.0
81 TraesCS7B01G013800 chr2D 80.303 264 16 20 2237 2465 648502958 648502696 2.640000e-37 167.0
82 TraesCS7B01G013800 chr2D 89.091 55 6 0 2164 2218 326452905 326452959 7.650000e-08 69.4
83 TraesCS7B01G013800 chr4B 90.141 426 29 10 3842 4263 186150939 186151355 3.750000e-150 542.0
84 TraesCS7B01G013800 chr4B 89.943 348 32 3 2389 2735 258794756 258794411 3.020000e-121 446.0
85 TraesCS7B01G013800 chr4B 89.666 329 32 2 2844 3171 258794359 258794032 6.590000e-113 418.0
86 TraesCS7B01G013800 chr4B 88.421 95 9 1 2277 2371 258794678 258794586 3.480000e-21 113.0
87 TraesCS7B01G013800 chr6B 78.152 801 111 33 78 823 134668517 134669308 6.500000e-123 451.0
88 TraesCS7B01G013800 chr6B 79.860 571 73 29 76 615 44076556 44077115 3.110000e-101 379.0
89 TraesCS7B01G013800 chr6B 78.571 630 79 28 138 725 659571294 659570679 8.710000e-97 364.0
90 TraesCS7B01G013800 chr3A 78.361 781 100 37 79 798 16635492 16634720 3.910000e-120 442.0
91 TraesCS7B01G013800 chr3A 88.288 222 10 5 3580 3786 694350571 694350791 7.080000e-63 252.0
92 TraesCS7B01G013800 chr2A 87.387 222 12 4 3580 3786 122822772 122822552 1.530000e-59 241.0
93 TraesCS7B01G013800 chr6A 86.486 222 14 5 3580 3786 384558431 384558211 3.320000e-56 230.0
94 TraesCS7B01G013800 chr6A 80.412 194 28 8 3466 3652 384558499 384558309 5.750000e-29 139.0
95 TraesCS7B01G013800 chr5B 90.385 52 5 0 2167 2218 304274510 304274459 7.650000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G013800 chr7B 10207392 10211654 4262 False 7873.000000 7873 100.000000 1 4263 1 chr7B.!!$F1 4262
1 TraesCS7B01G013800 chr7B 9811228 9814183 2955 False 647.400000 1221 93.910000 866 3846 6 chr7B.!!$F3 2980
2 TraesCS7B01G013800 chr7B 10102014 10104329 2315 False 497.800000 822 87.226400 1044 3846 5 chr7B.!!$F4 2802
3 TraesCS7B01G013800 chr7D 66538042 66538916 874 True 1103.000000 1103 90.023000 857 1704 1 chr7D.!!$R1 847
4 TraesCS7B01G013800 chr7D 66514772 66517367 2595 True 737.620000 1777 89.938200 841 3846 5 chr7D.!!$R3 3005
5 TraesCS7B01G013800 chr7D 68917368 68922425 5057 False 532.600000 870 89.403600 845 3846 5 chr7D.!!$F4 3001
6 TraesCS7B01G013800 chr7D 68801376 68804901 3525 False 479.962500 1136 91.515750 842 3846 8 chr7D.!!$F2 3004
7 TraesCS7B01G013800 chr7A 74601049 74603968 2919 False 882.750000 1628 88.573500 909 3846 4 chr7A.!!$F2 2937
8 TraesCS7B01G013800 chr7A 71133303 71134970 1667 True 664.333333 926 86.496333 866 2848 3 chr7A.!!$R2 1982
9 TraesCS7B01G013800 chr7A 71120281 71121118 837 True 326.000000 490 87.134000 2883 3846 3 chr7A.!!$R1 963
10 TraesCS7B01G013800 chr1D 486923685 486926642 2957 True 641.800000 1260 89.257800 843 3846 5 chr1D.!!$R1 3003
11 TraesCS7B01G013800 chr1B 678113856 678116518 2662 True 549.800000 817 86.020400 843 3749 5 chr1B.!!$R2 2906
12 TraesCS7B01G013800 chr1B 536598531 536599255 724 False 429.000000 429 78.312000 65 806 1 chr1B.!!$F1 741
13 TraesCS7B01G013800 chr1B 373320614 373321369 755 True 315.000000 315 75.750000 75 823 1 chr1B.!!$R1 748
14 TraesCS7B01G013800 chrUn 92638507 92639282 775 False 414.000000 414 77.472000 71 823 1 chrUn.!!$F2 752
15 TraesCS7B01G013800 chr3B 387437966 387438758 792 False 621.000000 621 81.807000 64 825 1 chr3B.!!$F1 761
16 TraesCS7B01G013800 chr6D 38625129 38625902 773 False 558.000000 558 80.682000 76 823 1 chr6D.!!$F1 747
17 TraesCS7B01G013800 chr4D 363572972 363573719 747 False 568.000000 568 80.909000 75 823 1 chr4D.!!$F1 748
18 TraesCS7B01G013800 chr2D 580398521 580399298 777 True 568.000000 568 80.832000 75 823 1 chr2D.!!$R1 748
19 TraesCS7B01G013800 chr4B 258794032 258794756 724 True 325.666667 446 89.343333 2277 3171 3 chr4B.!!$R1 894
20 TraesCS7B01G013800 chr6B 134668517 134669308 791 False 451.000000 451 78.152000 78 823 1 chr6B.!!$F2 745
21 TraesCS7B01G013800 chr6B 44076556 44077115 559 False 379.000000 379 79.860000 76 615 1 chr6B.!!$F1 539
22 TraesCS7B01G013800 chr6B 659570679 659571294 615 True 364.000000 364 78.571000 138 725 1 chr6B.!!$R1 587
23 TraesCS7B01G013800 chr3A 16634720 16635492 772 True 442.000000 442 78.361000 79 798 1 chr3A.!!$R1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
775 898 0.251608 CCAAAAATGGTCGGGGAGGT 60.252 55.0 0.00 0.0 0.00 3.85 F
2250 3860 0.325933 TGTATTCTGGCACTGCAGCT 59.674 50.0 15.27 0.0 34.17 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 4103 1.073199 CAGTCCACACAACTCCCCC 59.927 63.158 0.0 0.0 0.0 5.40 R
3883 7342 0.036732 CTGCTGTTCTGCCCCTACAA 59.963 55.000 0.0 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.406031 TCACGTATGAATCTCCTTTCTAACT 57.594 36.000 0.00 0.00 0.00 2.24
25 26 7.258441 TCACGTATGAATCTCCTTTCTAACTG 58.742 38.462 0.00 0.00 0.00 3.16
26 27 6.477033 CACGTATGAATCTCCTTTCTAACTGG 59.523 42.308 0.00 0.00 0.00 4.00
27 28 6.380274 ACGTATGAATCTCCTTTCTAACTGGA 59.620 38.462 0.00 0.00 0.00 3.86
28 29 7.070074 ACGTATGAATCTCCTTTCTAACTGGAT 59.930 37.037 0.00 0.00 0.00 3.41
29 30 8.577296 CGTATGAATCTCCTTTCTAACTGGATA 58.423 37.037 0.00 0.00 0.00 2.59
35 36 8.986929 ATCTCCTTTCTAACTGGATATTTTGG 57.013 34.615 0.00 0.00 0.00 3.28
36 37 7.928873 TCTCCTTTCTAACTGGATATTTTGGT 58.071 34.615 0.00 0.00 0.00 3.67
37 38 7.829211 TCTCCTTTCTAACTGGATATTTTGGTG 59.171 37.037 0.00 0.00 0.00 4.17
38 39 6.377146 TCCTTTCTAACTGGATATTTTGGTGC 59.623 38.462 0.00 0.00 0.00 5.01
39 40 6.405842 CCTTTCTAACTGGATATTTTGGTGCC 60.406 42.308 0.00 0.00 0.00 5.01
40 41 5.450818 TCTAACTGGATATTTTGGTGCCT 57.549 39.130 0.00 0.00 0.00 4.75
41 42 5.437060 TCTAACTGGATATTTTGGTGCCTC 58.563 41.667 0.00 0.00 0.00 4.70
42 43 4.322057 AACTGGATATTTTGGTGCCTCT 57.678 40.909 0.00 0.00 0.00 3.69
43 44 3.891049 ACTGGATATTTTGGTGCCTCTC 58.109 45.455 0.00 0.00 0.00 3.20
44 45 2.874701 CTGGATATTTTGGTGCCTCTCG 59.125 50.000 0.00 0.00 0.00 4.04
45 46 2.238646 TGGATATTTTGGTGCCTCTCGT 59.761 45.455 0.00 0.00 0.00 4.18
46 47 3.452990 TGGATATTTTGGTGCCTCTCGTA 59.547 43.478 0.00 0.00 0.00 3.43
47 48 3.808174 GGATATTTTGGTGCCTCTCGTAC 59.192 47.826 0.00 0.00 0.00 3.67
48 49 4.443034 GGATATTTTGGTGCCTCTCGTACT 60.443 45.833 0.00 0.00 0.00 2.73
49 50 2.922740 TTTTGGTGCCTCTCGTACTT 57.077 45.000 0.00 0.00 0.00 2.24
50 51 2.922740 TTTGGTGCCTCTCGTACTTT 57.077 45.000 0.00 0.00 0.00 2.66
51 52 4.339872 TTTTGGTGCCTCTCGTACTTTA 57.660 40.909 0.00 0.00 0.00 1.85
52 53 3.308438 TTGGTGCCTCTCGTACTTTAC 57.692 47.619 0.00 0.00 0.00 2.01
53 54 2.241160 TGGTGCCTCTCGTACTTTACA 58.759 47.619 0.00 0.00 0.00 2.41
54 55 2.629137 TGGTGCCTCTCGTACTTTACAA 59.371 45.455 0.00 0.00 0.00 2.41
55 56 2.991866 GGTGCCTCTCGTACTTTACAAC 59.008 50.000 0.00 0.00 0.00 3.32
56 57 3.305881 GGTGCCTCTCGTACTTTACAACT 60.306 47.826 0.00 0.00 0.00 3.16
57 58 4.082571 GGTGCCTCTCGTACTTTACAACTA 60.083 45.833 0.00 0.00 0.00 2.24
58 59 4.855937 GTGCCTCTCGTACTTTACAACTAC 59.144 45.833 0.00 0.00 0.00 2.73
59 60 4.763793 TGCCTCTCGTACTTTACAACTACT 59.236 41.667 0.00 0.00 0.00 2.57
60 61 5.939883 TGCCTCTCGTACTTTACAACTACTA 59.060 40.000 0.00 0.00 0.00 1.82
61 62 6.430925 TGCCTCTCGTACTTTACAACTACTAA 59.569 38.462 0.00 0.00 0.00 2.24
62 63 6.744993 GCCTCTCGTACTTTACAACTACTAAC 59.255 42.308 0.00 0.00 0.00 2.34
63 64 7.361628 GCCTCTCGTACTTTACAACTACTAACT 60.362 40.741 0.00 0.00 0.00 2.24
64 65 8.510505 CCTCTCGTACTTTACAACTACTAACTT 58.489 37.037 0.00 0.00 0.00 2.66
65 66 9.327529 CTCTCGTACTTTACAACTACTAACTTG 57.672 37.037 0.00 0.00 0.00 3.16
66 67 7.805071 TCTCGTACTTTACAACTACTAACTTGC 59.195 37.037 0.00 0.00 0.00 4.01
67 68 7.651808 TCGTACTTTACAACTACTAACTTGCT 58.348 34.615 0.00 0.00 0.00 3.91
68 69 7.592533 TCGTACTTTACAACTACTAACTTGCTG 59.407 37.037 0.00 0.00 0.00 4.41
69 70 6.541111 ACTTTACAACTACTAACTTGCTGC 57.459 37.500 0.00 0.00 0.00 5.25
133 142 1.835531 TCTCCTCTCATGCATGCTCAA 59.164 47.619 22.25 3.60 0.00 3.02
219 228 4.386867 AAGTCGAGACTCTGTTTGACAA 57.613 40.909 6.19 0.00 41.58 3.18
220 229 4.592485 AGTCGAGACTCTGTTTGACAAT 57.408 40.909 0.00 0.00 36.92 2.71
269 278 4.022329 GGCACTGTAGCAACCAGTATTTTT 60.022 41.667 3.08 0.00 41.10 1.94
421 482 9.762933 TTGGAGACCTGAAATTAATTTGAAAAG 57.237 29.630 17.98 9.55 0.00 2.27
641 755 1.341209 TGTCGCTCACTTCACTCATGT 59.659 47.619 0.00 0.00 0.00 3.21
669 788 1.318576 GAGTGAACAACTGTTGGGGG 58.681 55.000 23.15 0.00 40.07 5.40
727 846 1.520120 GCTGAGCTCGTGCATGCTA 60.520 57.895 20.33 2.15 42.74 3.49
730 849 0.532115 TGAGCTCGTGCATGCTAAGA 59.468 50.000 20.33 13.83 42.74 2.10
731 850 1.066929 TGAGCTCGTGCATGCTAAGAA 60.067 47.619 20.33 0.00 42.74 2.52
732 851 2.002586 GAGCTCGTGCATGCTAAGAAA 58.997 47.619 20.33 0.00 42.74 2.52
752 874 0.517316 GCCTCGTGCAAACTACCAAG 59.483 55.000 0.00 0.00 40.77 3.61
755 877 1.806542 CTCGTGCAAACTACCAAGCAT 59.193 47.619 0.00 0.00 39.43 3.79
766 888 4.159557 ACTACCAAGCATCCAAAAATGGT 58.840 39.130 0.00 0.00 43.25 3.55
768 890 2.029110 ACCAAGCATCCAAAAATGGTCG 60.029 45.455 0.00 0.00 36.47 4.79
775 898 0.251608 CCAAAAATGGTCGGGGAGGT 60.252 55.000 0.00 0.00 0.00 3.85
825 948 4.631813 GCACTCTATTAAACACACCCTGAG 59.368 45.833 0.00 0.00 0.00 3.35
826 949 5.794894 CACTCTATTAAACACACCCTGAGT 58.205 41.667 0.00 0.00 33.26 3.41
1045 1248 4.135153 CTCCCCGTCGCTGGAGTG 62.135 72.222 16.74 0.00 42.67 3.51
1243 2655 1.376683 GGCGGTGCACATCTACCAA 60.377 57.895 20.43 0.00 36.76 3.67
1246 2658 1.369091 CGGTGCACATCTACCAAGGC 61.369 60.000 20.43 0.00 36.76 4.35
1691 3234 1.133025 CGGGGATTGCAGATTGTGTTC 59.867 52.381 0.00 0.00 0.00 3.18
1709 3252 5.177142 TGTGTTCATTTCATTCGCCAAATTG 59.823 36.000 0.00 0.00 0.00 2.32
1713 3282 3.634568 TTTCATTCGCCAAATTGTCGT 57.365 38.095 0.00 0.00 0.00 4.34
1884 3491 2.363975 TGGCGGGTGATCCAGTACC 61.364 63.158 0.00 0.00 36.21 3.34
2153 3760 1.593006 CGCCATTGCTAACTTCCTACG 59.407 52.381 0.00 0.00 34.43 3.51
2154 3761 1.940613 GCCATTGCTAACTTCCTACGG 59.059 52.381 0.00 0.00 33.53 4.02
2155 3762 2.419574 GCCATTGCTAACTTCCTACGGA 60.420 50.000 0.00 0.00 33.53 4.69
2156 3763 3.458189 CCATTGCTAACTTCCTACGGAG 58.542 50.000 0.00 0.00 31.21 4.63
2217 3827 3.746492 GGAAGACAGCGTAATGAAACTGT 59.254 43.478 0.00 0.00 0.00 3.55
2227 3837 5.177696 GCGTAATGAAACTGTCTGAAGAACT 59.822 40.000 0.00 0.00 0.00 3.01
2240 3850 6.483307 TGTCTGAAGAACTGTTTGTATTCTGG 59.517 38.462 0.00 0.00 33.01 3.86
2241 3851 5.470098 TCTGAAGAACTGTTTGTATTCTGGC 59.530 40.000 0.00 0.00 33.01 4.85
2247 3857 2.553602 CTGTTTGTATTCTGGCACTGCA 59.446 45.455 2.82 0.00 0.00 4.41
2250 3860 0.325933 TGTATTCTGGCACTGCAGCT 59.674 50.000 15.27 0.00 34.17 4.24
2256 3866 1.280133 TCTGGCACTGCAGCTAATCTT 59.720 47.619 15.27 0.00 34.17 2.40
2258 3868 1.003464 TGGCACTGCAGCTAATCTTCA 59.997 47.619 15.27 0.00 34.17 3.02
2259 3869 1.669779 GGCACTGCAGCTAATCTTCAG 59.330 52.381 15.27 0.00 41.08 3.02
2261 3871 2.746362 GCACTGCAGCTAATCTTCAGTT 59.254 45.455 15.27 0.00 44.94 3.16
2262 3872 3.190118 GCACTGCAGCTAATCTTCAGTTT 59.810 43.478 15.27 0.00 44.94 2.66
2263 3873 4.720090 CACTGCAGCTAATCTTCAGTTTG 58.280 43.478 15.27 0.00 44.94 2.93
2264 3874 3.755378 ACTGCAGCTAATCTTCAGTTTGG 59.245 43.478 15.27 0.00 44.94 3.28
2266 3876 4.592942 TGCAGCTAATCTTCAGTTTGGAT 58.407 39.130 0.00 0.00 0.00 3.41
2267 3877 5.744171 TGCAGCTAATCTTCAGTTTGGATA 58.256 37.500 0.00 0.00 0.00 2.59
2268 3878 6.359804 TGCAGCTAATCTTCAGTTTGGATAT 58.640 36.000 0.00 0.00 0.00 1.63
2270 3880 7.992608 TGCAGCTAATCTTCAGTTTGGATATAA 59.007 33.333 0.00 0.00 0.00 0.98
2272 3882 9.553064 CAGCTAATCTTCAGTTTGGATATAAGT 57.447 33.333 0.00 0.00 0.00 2.24
2433 4092 7.986889 TGTATTCTGCAACTGCTGATAATCTTA 59.013 33.333 11.44 0.00 45.95 2.10
2444 4103 9.553064 ACTGCTGATAATCTTAAGTTAGGAATG 57.447 33.333 1.63 0.00 0.00 2.67
2599 5554 9.130661 TCATAACATATTCACATTAAACCCTGG 57.869 33.333 0.00 0.00 0.00 4.45
2688 5713 8.492748 CACTATTTGTCGCTTGTAGAAACTTTA 58.507 33.333 0.00 0.00 0.00 1.85
2692 5717 7.542534 TTGTCGCTTGTAGAAACTTTAGAAA 57.457 32.000 0.00 0.00 0.00 2.52
2719 5744 6.879400 AGATACCCAACTCAGTCAAGTTATC 58.121 40.000 0.00 0.00 37.38 1.75
2729 5754 7.818642 ACTCAGTCAAGTTATCTGTACTGTAC 58.181 38.462 10.98 10.98 37.92 2.90
2730 5755 6.839033 TCAGTCAAGTTATCTGTACTGTACG 58.161 40.000 12.87 8.14 37.92 3.67
2822 5876 9.512588 AGTATTTCATGAAATCTGTCTTTCAGT 57.487 29.630 31.70 14.49 45.50 3.41
2962 6016 2.292267 CCTGTGACATGATGCCTAACC 58.708 52.381 0.00 0.00 0.00 2.85
3045 6105 2.900716 AGAGAAAGATAAGAGCGGGC 57.099 50.000 0.00 0.00 0.00 6.13
3083 6143 2.298729 GTCCAGCTCTTCAGAAGTGTCT 59.701 50.000 10.09 6.69 32.85 3.41
3161 6224 2.549349 GGTTTAGGAACGCCTCTTGTGA 60.549 50.000 0.00 0.00 45.54 3.58
3166 6229 1.140816 GAACGCCTCTTGTGACTGTC 58.859 55.000 0.00 0.00 0.00 3.51
3256 6352 6.265196 AGAACCTGTGTAAAGAAATGATTGCA 59.735 34.615 0.00 0.00 0.00 4.08
3519 6914 4.881273 ACTGGTCGATATTATTTGCTGCAA 59.119 37.500 11.69 11.69 0.00 4.08
3554 6949 7.978975 TCTTTTGGGATTTATTTTAATGGAGCG 59.021 33.333 0.00 0.00 0.00 5.03
3577 6972 2.289882 TGATCAGCTTGTGGTGGAAGAG 60.290 50.000 0.00 0.00 41.59 2.85
3632 7027 5.611374 ACTGTTGTATTCTGTAACTGCTGT 58.389 37.500 0.00 0.00 0.00 4.40
3708 7154 5.006896 TCTTCAGTTAGGAGTTGGGAGTA 57.993 43.478 0.00 0.00 0.00 2.59
3848 7307 9.444600 AAATCGTTACTTAAGTCACATATTGGT 57.555 29.630 12.39 0.00 0.00 3.67
3850 7309 9.745880 ATCGTTACTTAAGTCACATATTGGTAG 57.254 33.333 12.39 0.00 0.00 3.18
3851 7310 8.192774 TCGTTACTTAAGTCACATATTGGTAGG 58.807 37.037 12.39 0.00 0.00 3.18
3853 7312 9.310716 GTTACTTAAGTCACATATTGGTAGGAC 57.689 37.037 12.39 0.00 0.00 3.85
3854 7313 7.735326 ACTTAAGTCACATATTGGTAGGACT 57.265 36.000 1.12 0.00 37.21 3.85
3855 7314 8.834004 ACTTAAGTCACATATTGGTAGGACTA 57.166 34.615 1.12 0.00 34.75 2.59
3856 7315 8.915036 ACTTAAGTCACATATTGGTAGGACTAG 58.085 37.037 1.12 0.00 34.75 2.57
3857 7316 6.732896 AAGTCACATATTGGTAGGACTAGG 57.267 41.667 0.00 0.00 34.75 3.02
3858 7317 5.148502 AGTCACATATTGGTAGGACTAGGG 58.851 45.833 0.00 0.00 34.13 3.53
3859 7318 4.900054 GTCACATATTGGTAGGACTAGGGT 59.100 45.833 0.00 0.00 0.00 4.34
3860 7319 5.365895 GTCACATATTGGTAGGACTAGGGTT 59.634 44.000 0.00 0.00 0.00 4.11
3861 7320 5.601313 TCACATATTGGTAGGACTAGGGTTC 59.399 44.000 0.00 0.00 0.00 3.62
3862 7321 4.906060 ACATATTGGTAGGACTAGGGTTCC 59.094 45.833 0.00 0.00 0.00 3.62
3863 7322 3.797671 ATTGGTAGGACTAGGGTTCCT 57.202 47.619 5.75 5.75 37.71 3.36
3867 7326 3.677156 GTAGGACTAGGGTTCCTACCA 57.323 52.381 20.22 0.00 46.18 3.25
3868 7327 2.850695 AGGACTAGGGTTCCTACCAG 57.149 55.000 0.00 0.00 46.96 4.00
3869 7328 1.121378 GGACTAGGGTTCCTACCAGC 58.879 60.000 0.00 0.00 46.96 4.85
3871 7330 2.033372 GACTAGGGTTCCTACCAGCTC 58.967 57.143 0.00 0.00 46.96 4.09
3873 7332 2.035632 CTAGGGTTCCTACCAGCTCTG 58.964 57.143 0.00 0.00 46.96 3.35
3874 7333 1.222113 GGGTTCCTACCAGCTCTGC 59.778 63.158 0.00 0.00 46.96 4.26
3875 7334 1.268283 GGGTTCCTACCAGCTCTGCT 61.268 60.000 0.00 0.00 46.96 4.24
3876 7335 0.176910 GGTTCCTACCAGCTCTGCTC 59.823 60.000 0.00 0.00 44.36 4.26
3877 7336 0.176910 GTTCCTACCAGCTCTGCTCC 59.823 60.000 0.00 0.00 36.40 4.70
3878 7337 1.323271 TTCCTACCAGCTCTGCTCCG 61.323 60.000 0.00 0.00 36.40 4.63
3879 7338 2.055042 CCTACCAGCTCTGCTCCGT 61.055 63.158 0.00 0.00 36.40 4.69
3881 7340 0.665835 CTACCAGCTCTGCTCCGTAG 59.334 60.000 8.17 8.17 36.40 3.51
3896 7355 0.899720 CGTAGGTTGTAGGGGCAGAA 59.100 55.000 0.00 0.00 0.00 3.02
3897 7356 1.405121 CGTAGGTTGTAGGGGCAGAAC 60.405 57.143 0.00 0.00 0.00 3.01
3899 7358 0.693049 AGGTTGTAGGGGCAGAACAG 59.307 55.000 0.00 0.00 0.00 3.16
3900 7359 0.960861 GGTTGTAGGGGCAGAACAGC 60.961 60.000 0.00 0.00 0.00 4.40
3902 7361 0.036732 TTGTAGGGGCAGAACAGCAG 59.963 55.000 0.00 0.00 35.83 4.24
3904 7363 0.107945 GTAGGGGCAGAACAGCAGAG 60.108 60.000 0.00 0.00 35.83 3.35
3905 7364 1.267574 TAGGGGCAGAACAGCAGAGG 61.268 60.000 0.00 0.00 35.83 3.69
3907 7366 1.073897 GGGCAGAACAGCAGAGGTT 59.926 57.895 0.00 0.00 35.83 3.50
3908 7367 1.239968 GGGCAGAACAGCAGAGGTTG 61.240 60.000 0.00 0.00 35.83 3.77
3909 7368 1.239968 GGCAGAACAGCAGAGGTTGG 61.240 60.000 0.00 0.00 35.83 3.77
3910 7369 1.239968 GCAGAACAGCAGAGGTTGGG 61.240 60.000 0.00 0.00 0.00 4.12
3911 7370 0.607489 CAGAACAGCAGAGGTTGGGG 60.607 60.000 0.00 0.00 0.00 4.96
3912 7371 1.303643 GAACAGCAGAGGTTGGGGG 60.304 63.158 0.00 0.00 0.00 5.40
3913 7372 3.513750 AACAGCAGAGGTTGGGGGC 62.514 63.158 0.00 0.00 0.00 5.80
3917 7376 4.101448 CAGAGGTTGGGGGCGAGG 62.101 72.222 0.00 0.00 0.00 4.63
3957 7416 4.856607 GCCGTCGCGAGGAAGGAG 62.857 72.222 28.85 13.30 46.09 3.69
3958 7417 4.194720 CCGTCGCGAGGAAGGAGG 62.195 72.222 28.85 10.81 46.09 4.30
3959 7418 3.132139 CGTCGCGAGGAAGGAGGA 61.132 66.667 23.61 0.00 0.00 3.71
3960 7419 2.802106 GTCGCGAGGAAGGAGGAG 59.198 66.667 10.24 0.00 0.00 3.69
3961 7420 2.440430 TCGCGAGGAAGGAGGAGG 60.440 66.667 3.71 0.00 0.00 4.30
3962 7421 3.532155 CGCGAGGAAGGAGGAGGG 61.532 72.222 0.00 0.00 0.00 4.30
3963 7422 3.855853 GCGAGGAAGGAGGAGGGC 61.856 72.222 0.00 0.00 0.00 5.19
3964 7423 3.532155 CGAGGAAGGAGGAGGGCG 61.532 72.222 0.00 0.00 0.00 6.13
3984 7443 4.796495 GGCGGTTAGGGCTGGTGG 62.796 72.222 0.00 0.00 0.00 4.61
3987 7446 4.796495 GGTTAGGGCTGGTGGCGG 62.796 72.222 0.00 0.00 42.94 6.13
3995 7454 3.717294 CTGGTGGCGGCTAGGGTT 61.717 66.667 11.43 0.00 0.00 4.11
3996 7455 3.682292 CTGGTGGCGGCTAGGGTTC 62.682 68.421 11.43 0.00 0.00 3.62
3997 7456 4.484872 GGTGGCGGCTAGGGTTCC 62.485 72.222 11.43 0.00 0.00 3.62
4002 7461 4.222847 CGGCTAGGGTTCCGGCTC 62.223 72.222 0.00 0.00 41.82 4.70
4003 7462 3.862991 GGCTAGGGTTCCGGCTCC 61.863 72.222 0.00 0.53 0.00 4.70
4005 7464 2.798364 GCTAGGGTTCCGGCTCCTC 61.798 68.421 12.29 4.77 32.46 3.71
4007 7466 1.381327 TAGGGTTCCGGCTCCTCTG 60.381 63.158 12.29 0.00 32.46 3.35
4008 7467 2.873557 TAGGGTTCCGGCTCCTCTGG 62.874 65.000 12.29 0.00 42.90 3.86
4020 7479 3.801997 CTCTGGGAGCCGGGCAAT 61.802 66.667 23.09 0.00 0.00 3.56
4022 7481 2.111878 CTGGGAGCCGGGCAATAG 59.888 66.667 23.09 9.80 0.00 1.73
4023 7482 3.482232 CTGGGAGCCGGGCAATAGG 62.482 68.421 23.09 4.36 0.00 2.57
4024 7483 3.168528 GGGAGCCGGGCAATAGGA 61.169 66.667 23.09 0.00 0.00 2.94
4025 7484 2.529744 GGGAGCCGGGCAATAGGAT 61.530 63.158 23.09 0.00 0.00 3.24
4027 7486 0.250513 GGAGCCGGGCAATAGGATAG 59.749 60.000 23.09 0.00 0.00 2.08
4028 7487 1.267121 GAGCCGGGCAATAGGATAGA 58.733 55.000 23.09 0.00 0.00 1.98
4029 7488 1.623811 GAGCCGGGCAATAGGATAGAA 59.376 52.381 23.09 0.00 0.00 2.10
4030 7489 2.038557 GAGCCGGGCAATAGGATAGAAA 59.961 50.000 23.09 0.00 0.00 2.52
4031 7490 2.441750 AGCCGGGCAATAGGATAGAAAA 59.558 45.455 23.09 0.00 0.00 2.29
4032 7491 3.074538 AGCCGGGCAATAGGATAGAAAAT 59.925 43.478 23.09 0.00 0.00 1.82
4033 7492 4.288626 AGCCGGGCAATAGGATAGAAAATA 59.711 41.667 23.09 0.00 0.00 1.40
4035 7494 5.297029 GCCGGGCAATAGGATAGAAAATATC 59.703 44.000 15.62 0.00 0.00 1.63
4036 7495 6.653989 CCGGGCAATAGGATAGAAAATATCT 58.346 40.000 0.00 0.00 42.48 1.98
4038 7497 7.611855 CCGGGCAATAGGATAGAAAATATCTTT 59.388 37.037 0.00 0.00 39.71 2.52
4039 7498 9.667107 CGGGCAATAGGATAGAAAATATCTTTA 57.333 33.333 0.00 0.00 39.71 1.85
4059 7518 9.649167 ATCTTTATTGCTTGATTCCAAAAAGAG 57.351 29.630 0.00 0.00 34.96 2.85
4061 7520 8.816640 TTTATTGCTTGATTCCAAAAAGAGTC 57.183 30.769 0.00 0.00 0.00 3.36
4064 7523 7.581213 TTGCTTGATTCCAAAAAGAGTCTTA 57.419 32.000 5.65 0.00 0.00 2.10
4065 7524 6.970484 TGCTTGATTCCAAAAAGAGTCTTAC 58.030 36.000 5.65 0.00 0.00 2.34
4066 7525 6.545666 TGCTTGATTCCAAAAAGAGTCTTACA 59.454 34.615 5.65 0.00 0.00 2.41
4067 7526 7.080724 GCTTGATTCCAAAAAGAGTCTTACAG 58.919 38.462 5.65 0.00 0.00 2.74
4068 7527 6.560253 TGATTCCAAAAAGAGTCTTACAGC 57.440 37.500 5.65 0.00 0.00 4.40
4069 7528 5.473504 TGATTCCAAAAAGAGTCTTACAGCC 59.526 40.000 5.65 0.00 0.00 4.85
4070 7529 4.706842 TCCAAAAAGAGTCTTACAGCCT 57.293 40.909 5.65 0.00 0.00 4.58
4071 7530 5.818678 TCCAAAAAGAGTCTTACAGCCTA 57.181 39.130 5.65 0.00 0.00 3.93
4073 7532 7.490657 TCCAAAAAGAGTCTTACAGCCTATA 57.509 36.000 5.65 0.00 0.00 1.31
4075 7534 8.548877 TCCAAAAAGAGTCTTACAGCCTATATT 58.451 33.333 5.65 0.00 0.00 1.28
4124 7583 9.794719 AGAATTAACCTAAGATAACTTATGGGC 57.205 33.333 10.69 0.00 37.85 5.36
4129 7588 8.562949 AACCTAAGATAACTTATGGGCTAAGA 57.437 34.615 0.98 0.00 39.43 2.10
4130 7589 8.743636 ACCTAAGATAACTTATGGGCTAAGAT 57.256 34.615 0.98 0.00 39.43 2.40
4132 7591 9.442047 CCTAAGATAACTTATGGGCTAAGATTG 57.558 37.037 0.98 0.00 39.43 2.67
4133 7592 7.751768 AAGATAACTTATGGGCTAAGATTGC 57.248 36.000 0.98 0.00 39.43 3.56
4134 7593 6.717084 AAGATAACTTATGGGCTAAGATTGCC 59.283 38.462 0.98 0.00 39.43 4.52
4139 7598 3.827634 GGCTAAGATTGCCCGGTG 58.172 61.111 0.00 0.00 44.32 4.94
4140 7599 1.823899 GGCTAAGATTGCCCGGTGG 60.824 63.158 0.00 0.00 44.32 4.61
4151 7610 3.164026 CCCGGTGGCCTAACTAAAC 57.836 57.895 3.32 0.00 0.00 2.01
4152 7611 0.393402 CCCGGTGGCCTAACTAAACC 60.393 60.000 3.32 0.00 0.00 3.27
4153 7612 2.758497 CGGTGGCCTAACTAAACCG 58.242 57.895 13.41 13.41 46.69 4.44
4154 7613 3.164026 GGTGGCCTAACTAAACCGG 57.836 57.895 3.32 0.00 0.00 5.28
4155 7614 0.325933 GGTGGCCTAACTAAACCGGT 59.674 55.000 0.00 0.00 0.00 5.28
4156 7615 1.676916 GGTGGCCTAACTAAACCGGTC 60.677 57.143 8.04 0.00 0.00 4.79
4157 7616 1.002315 GTGGCCTAACTAAACCGGTCA 59.998 52.381 8.04 0.00 0.00 4.02
4158 7617 1.910671 TGGCCTAACTAAACCGGTCAT 59.089 47.619 8.04 2.07 0.00 3.06
4159 7618 3.106054 TGGCCTAACTAAACCGGTCATA 58.894 45.455 8.04 3.40 0.00 2.15
4160 7619 3.518705 TGGCCTAACTAAACCGGTCATAA 59.481 43.478 8.04 0.00 0.00 1.90
4162 7621 4.506758 GCCTAACTAAACCGGTCATAACA 58.493 43.478 8.04 0.00 0.00 2.41
4163 7622 4.330894 GCCTAACTAAACCGGTCATAACAC 59.669 45.833 8.04 0.00 0.00 3.32
4165 7624 6.168389 CCTAACTAAACCGGTCATAACACTT 58.832 40.000 8.04 0.00 0.00 3.16
4169 7628 3.329929 AACCGGTCATAACACTTCTCC 57.670 47.619 8.04 0.00 0.00 3.71
4170 7629 1.553704 ACCGGTCATAACACTTCTCCC 59.446 52.381 0.00 0.00 0.00 4.30
4171 7630 1.134491 CCGGTCATAACACTTCTCCCC 60.134 57.143 0.00 0.00 0.00 4.81
4172 7631 1.470979 CGGTCATAACACTTCTCCCCG 60.471 57.143 0.00 0.00 0.00 5.73
4173 7632 1.653151 GTCATAACACTTCTCCCCGC 58.347 55.000 0.00 0.00 0.00 6.13
4176 7635 1.760613 CATAACACTTCTCCCCGCCTA 59.239 52.381 0.00 0.00 0.00 3.93
4177 7636 1.188863 TAACACTTCTCCCCGCCTAC 58.811 55.000 0.00 0.00 0.00 3.18
4178 7637 0.834687 AACACTTCTCCCCGCCTACA 60.835 55.000 0.00 0.00 0.00 2.74
4179 7638 1.218316 CACTTCTCCCCGCCTACAC 59.782 63.158 0.00 0.00 0.00 2.90
4180 7639 1.229082 ACTTCTCCCCGCCTACACA 60.229 57.895 0.00 0.00 0.00 3.72
4181 7640 0.834687 ACTTCTCCCCGCCTACACAA 60.835 55.000 0.00 0.00 0.00 3.33
4182 7641 0.323629 CTTCTCCCCGCCTACACAAA 59.676 55.000 0.00 0.00 0.00 2.83
4184 7643 1.122632 TCTCCCCGCCTACACAAACA 61.123 55.000 0.00 0.00 0.00 2.83
4185 7644 0.673644 CTCCCCGCCTACACAAACAG 60.674 60.000 0.00 0.00 0.00 3.16
4186 7645 2.332654 CCCCGCCTACACAAACAGC 61.333 63.158 0.00 0.00 0.00 4.40
4188 7647 1.298859 CCCGCCTACACAAACAGCTC 61.299 60.000 0.00 0.00 0.00 4.09
4189 7648 1.626654 CCGCCTACACAAACAGCTCG 61.627 60.000 0.00 0.00 0.00 5.03
4190 7649 0.944311 CGCCTACACAAACAGCTCGT 60.944 55.000 0.00 0.00 0.00 4.18
4191 7650 0.790814 GCCTACACAAACAGCTCGTC 59.209 55.000 0.00 0.00 0.00 4.20
4192 7651 1.429463 CCTACACAAACAGCTCGTCC 58.571 55.000 0.00 0.00 0.00 4.79
4193 7652 1.000955 CCTACACAAACAGCTCGTCCT 59.999 52.381 0.00 0.00 0.00 3.85
4195 7654 0.597637 ACACAAACAGCTCGTCCTCG 60.598 55.000 0.00 0.00 38.55 4.63
4196 7655 0.318699 CACAAACAGCTCGTCCTCGA 60.319 55.000 0.00 0.00 44.12 4.04
4206 7665 0.952497 TCGTCCTCGAGCTGTAACGT 60.952 55.000 6.99 0.00 41.35 3.99
4209 7668 1.153823 CCTCGAGCTGTAACGTGGG 60.154 63.158 6.99 0.00 38.79 4.61
4210 7669 1.153823 CTCGAGCTGTAACGTGGGG 60.154 63.158 0.00 0.00 0.00 4.96
4211 7670 1.592400 CTCGAGCTGTAACGTGGGGA 61.592 60.000 0.00 0.00 0.00 4.81
4212 7671 1.180456 TCGAGCTGTAACGTGGGGAA 61.180 55.000 0.00 0.00 0.00 3.97
4213 7672 0.736325 CGAGCTGTAACGTGGGGAAG 60.736 60.000 0.00 0.00 0.00 3.46
4214 7673 1.003718 AGCTGTAACGTGGGGAAGC 60.004 57.895 0.00 0.00 0.00 3.86
4216 7675 2.357760 TGTAACGTGGGGAAGCGC 60.358 61.111 0.00 0.00 0.00 5.92
4218 7677 1.670083 GTAACGTGGGGAAGCGCTT 60.670 57.895 25.35 25.35 0.00 4.68
4219 7678 1.669760 TAACGTGGGGAAGCGCTTG 60.670 57.895 30.47 14.60 0.00 4.01
4231 7690 1.131420 GCGCTTGCTGAACTTCTCG 59.869 57.895 0.00 0.00 35.07 4.04
4232 7691 1.284982 GCGCTTGCTGAACTTCTCGA 61.285 55.000 0.00 0.00 35.07 4.04
4233 7692 0.712775 CGCTTGCTGAACTTCTCGAG 59.287 55.000 5.93 5.93 0.00 4.04
4234 7693 1.074752 GCTTGCTGAACTTCTCGAGG 58.925 55.000 13.56 0.00 0.00 4.63
4235 7694 1.606737 GCTTGCTGAACTTCTCGAGGT 60.607 52.381 13.56 0.00 0.00 3.85
4236 7695 2.064762 CTTGCTGAACTTCTCGAGGTG 58.935 52.381 13.56 8.27 0.00 4.00
4237 7696 1.328279 TGCTGAACTTCTCGAGGTGA 58.672 50.000 13.56 0.00 0.00 4.02
4239 7698 2.094494 TGCTGAACTTCTCGAGGTGATC 60.094 50.000 13.56 10.21 0.00 2.92
4240 7699 2.094494 GCTGAACTTCTCGAGGTGATCA 60.094 50.000 13.56 13.90 0.00 2.92
4242 7701 3.914312 TGAACTTCTCGAGGTGATCAAC 58.086 45.455 13.56 1.26 0.00 3.18
4253 7712 2.316119 GTGATCAACCAGCGTCAAAC 57.684 50.000 0.00 0.00 0.00 2.93
4254 7713 1.601903 GTGATCAACCAGCGTCAAACA 59.398 47.619 0.00 0.00 0.00 2.83
4256 7715 0.951558 ATCAACCAGCGTCAAACACC 59.048 50.000 0.00 0.00 0.00 4.16
4257 7716 0.107410 TCAACCAGCGTCAAACACCT 60.107 50.000 0.00 0.00 0.00 4.00
4258 7717 0.738389 CAACCAGCGTCAAACACCTT 59.262 50.000 0.00 0.00 0.00 3.50
4259 7718 1.021968 AACCAGCGTCAAACACCTTC 58.978 50.000 0.00 0.00 0.00 3.46
4260 7719 0.180406 ACCAGCGTCAAACACCTTCT 59.820 50.000 0.00 0.00 0.00 2.85
4262 7721 0.508641 CAGCGTCAAACACCTTCTCG 59.491 55.000 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.477033 CCAGTTAGAAAGGAGATTCATACGTG 59.523 42.308 0.00 0.00 0.00 4.49
2 3 6.380274 TCCAGTTAGAAAGGAGATTCATACGT 59.620 38.462 0.00 0.00 0.00 3.57
9 10 9.413734 CCAAAATATCCAGTTAGAAAGGAGATT 57.586 33.333 0.00 0.00 43.15 2.40
10 11 8.560903 ACCAAAATATCCAGTTAGAAAGGAGAT 58.439 33.333 0.00 0.00 35.02 2.75
11 12 7.829211 CACCAAAATATCCAGTTAGAAAGGAGA 59.171 37.037 0.00 0.00 34.40 3.71
12 13 7.415653 GCACCAAAATATCCAGTTAGAAAGGAG 60.416 40.741 0.00 0.00 34.40 3.69
13 14 6.377146 GCACCAAAATATCCAGTTAGAAAGGA 59.623 38.462 0.00 0.00 35.59 3.36
14 15 6.405842 GGCACCAAAATATCCAGTTAGAAAGG 60.406 42.308 0.00 0.00 0.00 3.11
15 16 6.378280 AGGCACCAAAATATCCAGTTAGAAAG 59.622 38.462 0.00 0.00 0.00 2.62
16 17 6.252995 AGGCACCAAAATATCCAGTTAGAAA 58.747 36.000 0.00 0.00 0.00 2.52
17 18 5.826643 AGGCACCAAAATATCCAGTTAGAA 58.173 37.500 0.00 0.00 0.00 2.10
18 19 5.191722 AGAGGCACCAAAATATCCAGTTAGA 59.808 40.000 0.00 0.00 0.00 2.10
19 20 5.440610 AGAGGCACCAAAATATCCAGTTAG 58.559 41.667 0.00 0.00 0.00 2.34
20 21 5.437060 GAGAGGCACCAAAATATCCAGTTA 58.563 41.667 0.00 0.00 0.00 2.24
21 22 4.273318 GAGAGGCACCAAAATATCCAGTT 58.727 43.478 0.00 0.00 0.00 3.16
22 23 3.682718 CGAGAGGCACCAAAATATCCAGT 60.683 47.826 0.00 0.00 0.00 4.00
23 24 2.874701 CGAGAGGCACCAAAATATCCAG 59.125 50.000 0.00 0.00 0.00 3.86
24 25 2.238646 ACGAGAGGCACCAAAATATCCA 59.761 45.455 0.00 0.00 0.00 3.41
25 26 2.919228 ACGAGAGGCACCAAAATATCC 58.081 47.619 0.00 0.00 0.00 2.59
26 27 4.694339 AGTACGAGAGGCACCAAAATATC 58.306 43.478 0.00 0.00 0.00 1.63
27 28 4.755266 AGTACGAGAGGCACCAAAATAT 57.245 40.909 0.00 0.00 0.00 1.28
28 29 4.546829 AAGTACGAGAGGCACCAAAATA 57.453 40.909 0.00 0.00 0.00 1.40
29 30 3.418684 AAGTACGAGAGGCACCAAAAT 57.581 42.857 0.00 0.00 0.00 1.82
30 31 2.922740 AAGTACGAGAGGCACCAAAA 57.077 45.000 0.00 0.00 0.00 2.44
31 32 2.922740 AAAGTACGAGAGGCACCAAA 57.077 45.000 0.00 0.00 0.00 3.28
32 33 2.629137 TGTAAAGTACGAGAGGCACCAA 59.371 45.455 0.00 0.00 0.00 3.67
33 34 2.241160 TGTAAAGTACGAGAGGCACCA 58.759 47.619 0.00 0.00 0.00 4.17
34 35 2.991866 GTTGTAAAGTACGAGAGGCACC 59.008 50.000 0.00 0.00 0.00 5.01
35 36 3.910648 AGTTGTAAAGTACGAGAGGCAC 58.089 45.455 0.00 0.00 0.00 5.01
36 37 5.051891 GTAGTTGTAAAGTACGAGAGGCA 57.948 43.478 0.00 0.00 42.26 4.75
45 46 7.211573 TGCAGCAAGTTAGTAGTTGTAAAGTA 58.788 34.615 0.00 0.00 37.10 2.24
46 47 6.053005 TGCAGCAAGTTAGTAGTTGTAAAGT 58.947 36.000 0.00 0.00 37.10 2.66
47 48 6.539649 TGCAGCAAGTTAGTAGTTGTAAAG 57.460 37.500 0.00 0.00 37.10 1.85
48 49 7.227711 TCAATGCAGCAAGTTAGTAGTTGTAAA 59.772 33.333 0.00 0.00 37.10 2.01
49 50 6.708502 TCAATGCAGCAAGTTAGTAGTTGTAA 59.291 34.615 0.00 0.00 37.10 2.41
50 51 6.227522 TCAATGCAGCAAGTTAGTAGTTGTA 58.772 36.000 0.00 0.00 37.10 2.41
51 52 5.063204 TCAATGCAGCAAGTTAGTAGTTGT 58.937 37.500 0.00 0.00 37.10 3.32
52 53 5.391310 CCTCAATGCAGCAAGTTAGTAGTTG 60.391 44.000 0.00 0.00 37.68 3.16
53 54 4.697352 CCTCAATGCAGCAAGTTAGTAGTT 59.303 41.667 0.00 0.00 0.00 2.24
54 55 4.256920 CCTCAATGCAGCAAGTTAGTAGT 58.743 43.478 0.00 0.00 0.00 2.73
55 56 3.624861 CCCTCAATGCAGCAAGTTAGTAG 59.375 47.826 0.00 0.00 0.00 2.57
56 57 3.009033 ACCCTCAATGCAGCAAGTTAGTA 59.991 43.478 0.00 0.00 0.00 1.82
57 58 2.224867 ACCCTCAATGCAGCAAGTTAGT 60.225 45.455 0.00 0.00 0.00 2.24
58 59 2.163010 CACCCTCAATGCAGCAAGTTAG 59.837 50.000 0.00 0.00 0.00 2.34
59 60 2.161855 CACCCTCAATGCAGCAAGTTA 58.838 47.619 0.00 0.00 0.00 2.24
60 61 0.963962 CACCCTCAATGCAGCAAGTT 59.036 50.000 0.00 0.00 0.00 2.66
61 62 0.178981 ACACCCTCAATGCAGCAAGT 60.179 50.000 0.00 0.00 0.00 3.16
62 63 0.242825 CACACCCTCAATGCAGCAAG 59.757 55.000 0.00 0.00 0.00 4.01
63 64 0.467844 ACACACCCTCAATGCAGCAA 60.468 50.000 0.00 0.00 0.00 3.91
64 65 0.467844 AACACACCCTCAATGCAGCA 60.468 50.000 0.00 0.00 0.00 4.41
65 66 0.675633 AAACACACCCTCAATGCAGC 59.324 50.000 0.00 0.00 0.00 5.25
66 67 1.000060 CCAAACACACCCTCAATGCAG 60.000 52.381 0.00 0.00 0.00 4.41
67 68 1.039068 CCAAACACACCCTCAATGCA 58.961 50.000 0.00 0.00 0.00 3.96
68 69 1.039856 ACCAAACACACCCTCAATGC 58.960 50.000 0.00 0.00 0.00 3.56
69 70 2.228822 GCTACCAAACACACCCTCAATG 59.771 50.000 0.00 0.00 0.00 2.82
133 142 4.141869 TGCATGTACTCAGCATGTCTACAT 60.142 41.667 7.06 0.00 43.93 2.29
219 228 5.163723 CCGACATGTCTAAACAGATGCAAAT 60.164 40.000 22.95 0.00 39.20 2.32
220 229 4.154015 CCGACATGTCTAAACAGATGCAAA 59.846 41.667 22.95 0.00 39.20 3.68
391 442 9.927668 TCAAATTAATTTCAGGTCTCCAAATTC 57.072 29.630 10.53 0.00 33.02 2.17
641 755 3.243737 ACAGTTGTTCACTCGTCAGCATA 60.244 43.478 0.00 0.00 30.92 3.14
673 792 1.026718 CATGCACGAAGAGAACCCCC 61.027 60.000 0.00 0.00 0.00 5.40
674 793 1.648467 GCATGCACGAAGAGAACCCC 61.648 60.000 14.21 0.00 0.00 4.95
675 794 0.674895 AGCATGCACGAAGAGAACCC 60.675 55.000 21.98 0.00 0.00 4.11
676 795 2.010145 TAGCATGCACGAAGAGAACC 57.990 50.000 21.98 0.00 0.00 3.62
677 796 3.254060 TCTTAGCATGCACGAAGAGAAC 58.746 45.455 21.98 0.00 0.00 3.01
678 797 3.515630 CTCTTAGCATGCACGAAGAGAA 58.484 45.455 32.59 14.56 45.09 2.87
727 846 1.680338 AGTTTGCACGAGGCTTTCTT 58.320 45.000 0.00 0.00 45.15 2.52
730 849 1.235724 GGTAGTTTGCACGAGGCTTT 58.764 50.000 0.00 0.00 45.15 3.51
731 850 0.107831 TGGTAGTTTGCACGAGGCTT 59.892 50.000 0.00 0.00 45.15 4.35
732 851 0.107831 TTGGTAGTTTGCACGAGGCT 59.892 50.000 0.00 0.00 45.15 4.58
752 874 0.175531 CCCCGACCATTTTTGGATGC 59.824 55.000 0.00 0.00 0.00 3.91
755 877 0.039035 CCTCCCCGACCATTTTTGGA 59.961 55.000 0.00 0.00 0.00 3.53
766 888 1.076677 ACTCAAGAGTTACCTCCCCGA 59.923 52.381 0.00 0.00 38.83 5.14
825 948 4.216411 ACACACCATCCCTATTGTACAC 57.784 45.455 0.00 0.00 0.00 2.90
826 949 4.287326 TCAACACACCATCCCTATTGTACA 59.713 41.667 0.00 0.00 0.00 2.90
827 950 4.839121 TCAACACACCATCCCTATTGTAC 58.161 43.478 0.00 0.00 0.00 2.90
828 951 4.080582 CCTCAACACACCATCCCTATTGTA 60.081 45.833 0.00 0.00 0.00 2.41
829 952 3.308402 CCTCAACACACCATCCCTATTGT 60.308 47.826 0.00 0.00 0.00 2.71
830 953 3.054434 TCCTCAACACACCATCCCTATTG 60.054 47.826 0.00 0.00 0.00 1.90
831 954 3.189606 TCCTCAACACACCATCCCTATT 58.810 45.455 0.00 0.00 0.00 1.73
832 955 2.845659 TCCTCAACACACCATCCCTAT 58.154 47.619 0.00 0.00 0.00 2.57
833 956 2.335681 TCCTCAACACACCATCCCTA 57.664 50.000 0.00 0.00 0.00 3.53
834 957 1.444933 TTCCTCAACACACCATCCCT 58.555 50.000 0.00 0.00 0.00 4.20
835 958 2.290896 TGATTCCTCAACACACCATCCC 60.291 50.000 0.00 0.00 0.00 3.85
836 959 3.012518 CTGATTCCTCAACACACCATCC 58.987 50.000 0.00 0.00 0.00 3.51
837 960 3.012518 CCTGATTCCTCAACACACCATC 58.987 50.000 0.00 0.00 0.00 3.51
838 961 2.291153 CCCTGATTCCTCAACACACCAT 60.291 50.000 0.00 0.00 0.00 3.55
839 962 1.073763 CCCTGATTCCTCAACACACCA 59.926 52.381 0.00 0.00 0.00 4.17
951 1132 1.130561 GTATTTCAAGGTGGCTGACGC 59.869 52.381 0.00 0.00 0.00 5.19
1068 1294 1.303643 TGACGCTGGAGAGCAGAGA 60.304 57.895 0.00 0.00 46.62 3.10
1502 2929 2.528743 CGACCCAGTGCATCATCGC 61.529 63.158 0.00 0.00 0.00 4.58
1709 3252 3.606687 ACATCCAAGAACCCAATACGAC 58.393 45.455 0.00 0.00 0.00 4.34
1713 3282 3.992943 ACGACATCCAAGAACCCAATA 57.007 42.857 0.00 0.00 0.00 1.90
1908 3515 2.464459 CCCAGGCGAAGATTGCGTC 61.464 63.158 0.00 0.00 0.00 5.19
1913 3520 2.300967 TGAGGCCCAGGCGAAGATT 61.301 57.895 0.00 0.00 43.06 2.40
1915 3522 3.706373 GTGAGGCCCAGGCGAAGA 61.706 66.667 0.00 0.00 43.06 2.87
2153 3760 9.761504 GTACTCCATTAAAATAGGAAGTACTCC 57.238 37.037 0.00 0.00 45.81 3.85
2204 3814 6.201044 ACAGTTCTTCAGACAGTTTCATTACG 59.799 38.462 0.00 0.00 0.00 3.18
2205 3815 7.484035 ACAGTTCTTCAGACAGTTTCATTAC 57.516 36.000 0.00 0.00 0.00 1.89
2217 3827 5.470098 GCCAGAATACAAACAGTTCTTCAGA 59.530 40.000 0.00 0.00 30.19 3.27
2227 3837 2.553602 CTGCAGTGCCAGAATACAAACA 59.446 45.455 13.72 0.00 34.77 2.83
2298 3925 7.518211 GCAAATACCAACTGTTTCCATTCAAAC 60.518 37.037 0.00 0.00 36.87 2.93
2299 3926 6.481644 GCAAATACCAACTGTTTCCATTCAAA 59.518 34.615 0.00 0.00 0.00 2.69
2433 4092 2.993863 ACAACTCCCCCATTCCTAACTT 59.006 45.455 0.00 0.00 0.00 2.66
2444 4103 1.073199 CAGTCCACACAACTCCCCC 59.927 63.158 0.00 0.00 0.00 5.40
2599 5554 6.624423 ACTATGAAACCAATCATTTCTGTGC 58.376 36.000 0.00 0.00 40.44 4.57
2660 5632 4.188247 TCTACAAGCGACAAATAGTGCT 57.812 40.909 0.00 0.00 36.57 4.40
2688 5713 7.496346 TGACTGAGTTGGGTATCTAATTTCT 57.504 36.000 0.00 0.00 0.00 2.52
2692 5717 6.875972 ACTTGACTGAGTTGGGTATCTAAT 57.124 37.500 0.00 0.00 0.00 1.73
2719 5744 4.365723 ACCAAACAGAACGTACAGTACAG 58.634 43.478 11.37 6.32 0.00 2.74
2760 5813 5.039984 TGAATTTGGTTCACATGTTGTTCG 58.960 37.500 0.00 0.00 41.79 3.95
2962 6016 6.091986 GCTGAATTAGAACAGAAAGTGAGGAG 59.908 42.308 0.00 0.00 36.38 3.69
3058 6118 1.001406 CTTCTGAAGAGCTGGACCGTT 59.999 52.381 12.01 0.00 0.00 4.44
3087 6147 3.378427 TCTCATGTCATAGTGTCCGAGTG 59.622 47.826 0.00 0.00 0.00 3.51
3088 6148 3.621558 TCTCATGTCATAGTGTCCGAGT 58.378 45.455 0.00 0.00 0.00 4.18
3161 6224 8.043113 TGAATCAAGTTTATCTATGCTGACAGT 58.957 33.333 3.99 0.00 0.00 3.55
3256 6352 6.541641 CCTGAAGTAGCAGCAAGAATAAGAAT 59.458 38.462 0.00 0.00 34.56 2.40
3577 6972 6.215495 ACTCCTAACTGAAGATTAGCACTC 57.785 41.667 0.00 0.00 0.00 3.51
3789 7247 9.643693 CAACAACCAATTTAGCTTTAGATCAAT 57.356 29.630 0.00 0.00 0.00 2.57
3790 7248 8.855110 TCAACAACCAATTTAGCTTTAGATCAA 58.145 29.630 0.00 0.00 0.00 2.57
3797 7255 5.833131 TCTCCTCAACAACCAATTTAGCTTT 59.167 36.000 0.00 0.00 0.00 3.51
3848 7307 2.091444 GCTGGTAGGAACCCTAGTCCTA 60.091 54.545 3.95 3.95 46.16 2.94
3850 7309 1.121378 GCTGGTAGGAACCCTAGTCC 58.879 60.000 0.00 0.00 46.16 3.85
3851 7310 2.033372 GAGCTGGTAGGAACCCTAGTC 58.967 57.143 0.00 0.00 46.16 2.59
3853 7312 2.035632 CAGAGCTGGTAGGAACCCTAG 58.964 57.143 0.00 0.00 46.16 3.02
3854 7313 1.965318 GCAGAGCTGGTAGGAACCCTA 60.965 57.143 0.00 0.00 46.16 3.53
3855 7314 1.268283 GCAGAGCTGGTAGGAACCCT 61.268 60.000 0.00 0.00 46.16 4.34
3856 7315 1.222113 GCAGAGCTGGTAGGAACCC 59.778 63.158 0.00 0.00 46.16 4.11
3857 7316 0.176910 GAGCAGAGCTGGTAGGAACC 59.823 60.000 1.72 0.00 46.98 3.62
3858 7317 0.176910 GGAGCAGAGCTGGTAGGAAC 59.823 60.000 1.72 0.00 39.88 3.62
3859 7318 1.323271 CGGAGCAGAGCTGGTAGGAA 61.323 60.000 1.72 0.00 39.88 3.36
3860 7319 1.754621 CGGAGCAGAGCTGGTAGGA 60.755 63.158 1.72 0.00 39.88 2.94
3861 7320 0.752009 TACGGAGCAGAGCTGGTAGG 60.752 60.000 1.72 0.64 39.88 3.18
3862 7321 0.665835 CTACGGAGCAGAGCTGGTAG 59.334 60.000 1.72 4.55 39.88 3.18
3863 7322 0.752009 CCTACGGAGCAGAGCTGGTA 60.752 60.000 1.72 0.00 39.88 3.25
3865 7324 1.608717 AACCTACGGAGCAGAGCTGG 61.609 60.000 0.00 0.00 39.88 4.85
3866 7325 0.459237 CAACCTACGGAGCAGAGCTG 60.459 60.000 0.00 0.00 39.88 4.24
3867 7326 0.900647 ACAACCTACGGAGCAGAGCT 60.901 55.000 0.00 0.00 43.88 4.09
3868 7327 0.815734 TACAACCTACGGAGCAGAGC 59.184 55.000 0.00 0.00 0.00 4.09
3869 7328 1.405821 CCTACAACCTACGGAGCAGAG 59.594 57.143 0.00 0.00 0.00 3.35
3871 7330 0.460311 CCCTACAACCTACGGAGCAG 59.540 60.000 0.00 0.00 0.00 4.24
3873 7332 1.821258 CCCCTACAACCTACGGAGC 59.179 63.158 0.00 0.00 0.00 4.70
3874 7333 0.974010 TGCCCCTACAACCTACGGAG 60.974 60.000 0.00 0.00 0.00 4.63
3875 7334 0.974010 CTGCCCCTACAACCTACGGA 60.974 60.000 0.00 0.00 0.00 4.69
3876 7335 0.974010 TCTGCCCCTACAACCTACGG 60.974 60.000 0.00 0.00 0.00 4.02
3877 7336 0.899720 TTCTGCCCCTACAACCTACG 59.100 55.000 0.00 0.00 0.00 3.51
3878 7337 1.626825 TGTTCTGCCCCTACAACCTAC 59.373 52.381 0.00 0.00 0.00 3.18
3879 7338 1.906574 CTGTTCTGCCCCTACAACCTA 59.093 52.381 0.00 0.00 0.00 3.08
3881 7340 0.960861 GCTGTTCTGCCCCTACAACC 60.961 60.000 0.00 0.00 0.00 3.77
3882 7341 0.250727 TGCTGTTCTGCCCCTACAAC 60.251 55.000 0.00 0.00 0.00 3.32
3883 7342 0.036732 CTGCTGTTCTGCCCCTACAA 59.963 55.000 0.00 0.00 0.00 2.41
3884 7343 0.835971 TCTGCTGTTCTGCCCCTACA 60.836 55.000 0.00 0.00 0.00 2.74
3885 7344 0.107945 CTCTGCTGTTCTGCCCCTAC 60.108 60.000 0.00 0.00 0.00 3.18
3886 7345 1.267574 CCTCTGCTGTTCTGCCCCTA 61.268 60.000 0.00 0.00 0.00 3.53
3887 7346 2.600729 CCTCTGCTGTTCTGCCCCT 61.601 63.158 0.00 0.00 0.00 4.79
3890 7349 1.239968 CCAACCTCTGCTGTTCTGCC 61.240 60.000 0.00 0.00 0.00 4.85
3891 7350 1.239968 CCCAACCTCTGCTGTTCTGC 61.240 60.000 0.00 0.00 0.00 4.26
3896 7355 3.971702 GCCCCCAACCTCTGCTGT 61.972 66.667 0.00 0.00 0.00 4.40
3899 7358 4.785453 CTCGCCCCCAACCTCTGC 62.785 72.222 0.00 0.00 0.00 4.26
3900 7359 4.101448 CCTCGCCCCCAACCTCTG 62.101 72.222 0.00 0.00 0.00 3.35
3940 7399 4.856607 CTCCTTCCTCGCGACGGC 62.857 72.222 3.71 0.00 29.74 5.68
3941 7400 4.194720 CCTCCTTCCTCGCGACGG 62.195 72.222 3.71 11.67 0.00 4.79
3942 7401 3.114647 CTCCTCCTTCCTCGCGACG 62.115 68.421 3.71 0.39 0.00 5.12
3943 7402 2.776913 CCTCCTCCTTCCTCGCGAC 61.777 68.421 3.71 0.00 0.00 5.19
3944 7403 2.440430 CCTCCTCCTTCCTCGCGA 60.440 66.667 9.26 9.26 0.00 5.87
3945 7404 3.532155 CCCTCCTCCTTCCTCGCG 61.532 72.222 0.00 0.00 0.00 5.87
3947 7406 3.532155 CGCCCTCCTCCTTCCTCG 61.532 72.222 0.00 0.00 0.00 4.63
3967 7426 4.796495 CCACCAGCCCTAACCGCC 62.796 72.222 0.00 0.00 0.00 6.13
3970 7429 4.796495 CCGCCACCAGCCCTAACC 62.796 72.222 0.00 0.00 38.78 2.85
3973 7432 4.789173 TAGCCGCCACCAGCCCTA 62.789 66.667 0.00 0.00 38.78 3.53
3978 7437 3.682292 GAACCCTAGCCGCCACCAG 62.682 68.421 0.00 0.00 0.00 4.00
3979 7438 3.712907 GAACCCTAGCCGCCACCA 61.713 66.667 0.00 0.00 0.00 4.17
3980 7439 4.484872 GGAACCCTAGCCGCCACC 62.485 72.222 0.00 0.00 0.00 4.61
3985 7444 4.222847 GAGCCGGAACCCTAGCCG 62.223 72.222 5.05 0.00 46.80 5.52
3986 7445 3.862991 GGAGCCGGAACCCTAGCC 61.863 72.222 5.05 0.00 0.00 3.93
3987 7446 2.764547 AGGAGCCGGAACCCTAGC 60.765 66.667 5.05 0.00 0.00 3.42
3988 7447 1.075896 AGAGGAGCCGGAACCCTAG 60.076 63.158 5.05 0.00 0.00 3.02
3992 7451 3.787001 CCCAGAGGAGCCGGAACC 61.787 72.222 5.05 7.56 33.47 3.62
3993 7452 2.683933 TCCCAGAGGAGCCGGAAC 60.684 66.667 5.05 0.00 37.19 3.62
4003 7462 2.388890 CTATTGCCCGGCTCCCAGAG 62.389 65.000 11.61 0.00 0.00 3.35
4005 7464 2.111878 CTATTGCCCGGCTCCCAG 59.888 66.667 11.61 0.00 0.00 4.45
4007 7466 1.198759 TATCCTATTGCCCGGCTCCC 61.199 60.000 11.61 0.00 0.00 4.30
4008 7467 0.250513 CTATCCTATTGCCCGGCTCC 59.749 60.000 11.61 0.00 0.00 4.70
4011 7470 2.561478 TTTCTATCCTATTGCCCGGC 57.439 50.000 1.04 1.04 0.00 6.13
4013 7472 8.567285 AAAGATATTTTCTATCCTATTGCCCG 57.433 34.615 0.00 0.00 33.05 6.13
4033 7492 9.649167 CTCTTTTTGGAATCAAGCAATAAAGAT 57.351 29.630 0.00 0.00 35.73 2.40
4035 7494 8.822652 ACTCTTTTTGGAATCAAGCAATAAAG 57.177 30.769 0.00 0.00 33.98 1.85
4036 7495 8.641541 AGACTCTTTTTGGAATCAAGCAATAAA 58.358 29.630 0.00 0.00 33.98 1.40
4038 7497 7.765695 AGACTCTTTTTGGAATCAAGCAATA 57.234 32.000 0.00 0.00 33.98 1.90
4039 7498 6.661304 AGACTCTTTTTGGAATCAAGCAAT 57.339 33.333 0.00 0.00 33.98 3.56
4041 7500 6.545666 TGTAAGACTCTTTTTGGAATCAAGCA 59.454 34.615 0.00 0.00 33.98 3.91
4042 7501 6.970484 TGTAAGACTCTTTTTGGAATCAAGC 58.030 36.000 0.00 0.00 33.98 4.01
4043 7502 7.080724 GCTGTAAGACTCTTTTTGGAATCAAG 58.919 38.462 0.00 0.00 34.07 3.02
4044 7503 6.016276 GGCTGTAAGACTCTTTTTGGAATCAA 60.016 38.462 0.00 0.00 40.68 2.57
4045 7504 5.473504 GGCTGTAAGACTCTTTTTGGAATCA 59.526 40.000 0.00 0.00 40.68 2.57
4046 7505 5.944013 GGCTGTAAGACTCTTTTTGGAATC 58.056 41.667 0.00 0.00 40.68 2.52
4099 7558 9.794719 AGCCCATAAGTTATCTTAGGTTAATTC 57.205 33.333 4.92 0.00 39.17 2.17
4104 7563 8.562949 TCTTAGCCCATAAGTTATCTTAGGTT 57.437 34.615 4.92 0.90 41.52 3.50
4105 7564 8.743636 ATCTTAGCCCATAAGTTATCTTAGGT 57.256 34.615 4.92 0.00 41.52 3.08
4106 7565 9.442047 CAATCTTAGCCCATAAGTTATCTTAGG 57.558 37.037 0.00 0.00 41.52 2.69
4107 7566 8.940952 GCAATCTTAGCCCATAAGTTATCTTAG 58.059 37.037 0.00 0.00 41.52 2.18
4110 7569 6.241645 GGCAATCTTAGCCCATAAGTTATCT 58.758 40.000 0.00 0.00 46.50 1.98
4111 7570 6.502136 GGCAATCTTAGCCCATAAGTTATC 57.498 41.667 0.00 0.00 46.50 1.75
4133 7592 0.393402 GGTTTAGTTAGGCCACCGGG 60.393 60.000 6.32 0.00 37.18 5.73
4134 7593 0.741927 CGGTTTAGTTAGGCCACCGG 60.742 60.000 18.26 0.00 45.44 5.28
4136 7595 0.325933 ACCGGTTTAGTTAGGCCACC 59.674 55.000 5.01 0.00 0.00 4.61
4137 7596 1.002315 TGACCGGTTTAGTTAGGCCAC 59.998 52.381 9.42 0.00 0.00 5.01
4138 7597 1.350071 TGACCGGTTTAGTTAGGCCA 58.650 50.000 9.42 0.00 0.00 5.36
4139 7598 2.704464 ATGACCGGTTTAGTTAGGCC 57.296 50.000 9.42 0.00 0.00 5.19
4140 7599 4.330894 GTGTTATGACCGGTTTAGTTAGGC 59.669 45.833 9.42 0.00 0.00 3.93
4142 7601 7.095270 AGAAGTGTTATGACCGGTTTAGTTAG 58.905 38.462 9.42 0.00 0.00 2.34
4143 7602 6.996509 AGAAGTGTTATGACCGGTTTAGTTA 58.003 36.000 9.42 0.00 0.00 2.24
4144 7603 5.861727 AGAAGTGTTATGACCGGTTTAGTT 58.138 37.500 9.42 1.04 0.00 2.24
4145 7604 5.476614 GAGAAGTGTTATGACCGGTTTAGT 58.523 41.667 9.42 0.00 0.00 2.24
4146 7605 4.868734 GGAGAAGTGTTATGACCGGTTTAG 59.131 45.833 9.42 0.00 0.00 1.85
4147 7606 4.322953 GGGAGAAGTGTTATGACCGGTTTA 60.323 45.833 9.42 0.66 0.00 2.01
4148 7607 3.558533 GGGAGAAGTGTTATGACCGGTTT 60.559 47.826 9.42 1.66 0.00 3.27
4149 7608 2.027469 GGGAGAAGTGTTATGACCGGTT 60.027 50.000 9.42 0.00 0.00 4.44
4150 7609 1.553704 GGGAGAAGTGTTATGACCGGT 59.446 52.381 6.92 6.92 0.00 5.28
4151 7610 1.134491 GGGGAGAAGTGTTATGACCGG 60.134 57.143 0.00 0.00 0.00 5.28
4152 7611 1.470979 CGGGGAGAAGTGTTATGACCG 60.471 57.143 0.00 0.00 0.00 4.79
4153 7612 1.742750 GCGGGGAGAAGTGTTATGACC 60.743 57.143 0.00 0.00 0.00 4.02
4154 7613 1.653151 GCGGGGAGAAGTGTTATGAC 58.347 55.000 0.00 0.00 0.00 3.06
4155 7614 0.539986 GGCGGGGAGAAGTGTTATGA 59.460 55.000 0.00 0.00 0.00 2.15
4156 7615 0.541863 AGGCGGGGAGAAGTGTTATG 59.458 55.000 0.00 0.00 0.00 1.90
4157 7616 1.761198 GTAGGCGGGGAGAAGTGTTAT 59.239 52.381 0.00 0.00 0.00 1.89
4158 7617 1.188863 GTAGGCGGGGAGAAGTGTTA 58.811 55.000 0.00 0.00 0.00 2.41
4159 7618 0.834687 TGTAGGCGGGGAGAAGTGTT 60.835 55.000 0.00 0.00 0.00 3.32
4160 7619 1.229082 TGTAGGCGGGGAGAAGTGT 60.229 57.895 0.00 0.00 0.00 3.55
4162 7621 0.834687 TTGTGTAGGCGGGGAGAAGT 60.835 55.000 0.00 0.00 0.00 3.01
4163 7622 0.323629 TTTGTGTAGGCGGGGAGAAG 59.676 55.000 0.00 0.00 0.00 2.85
4165 7624 1.122632 TGTTTGTGTAGGCGGGGAGA 61.123 55.000 0.00 0.00 0.00 3.71
4169 7628 1.298859 GAGCTGTTTGTGTAGGCGGG 61.299 60.000 0.00 0.00 0.00 6.13
4170 7629 1.626654 CGAGCTGTTTGTGTAGGCGG 61.627 60.000 0.00 0.00 0.00 6.13
4171 7630 0.944311 ACGAGCTGTTTGTGTAGGCG 60.944 55.000 0.00 0.00 0.00 5.52
4172 7631 0.790814 GACGAGCTGTTTGTGTAGGC 59.209 55.000 0.00 0.00 0.00 3.93
4173 7632 1.000955 AGGACGAGCTGTTTGTGTAGG 59.999 52.381 0.00 0.00 0.00 3.18
4176 7635 0.597637 CGAGGACGAGCTGTTTGTGT 60.598 55.000 0.00 0.00 42.66 3.72
4177 7636 0.318699 TCGAGGACGAGCTGTTTGTG 60.319 55.000 0.00 0.00 43.81 3.33
4178 7637 2.038690 TCGAGGACGAGCTGTTTGT 58.961 52.632 0.00 0.00 43.81 2.83
4179 7638 4.966005 TCGAGGACGAGCTGTTTG 57.034 55.556 0.00 0.00 43.81 2.93
4188 7647 0.793478 CACGTTACAGCTCGAGGACG 60.793 60.000 15.58 7.82 41.26 4.79
4189 7648 0.456312 CCACGTTACAGCTCGAGGAC 60.456 60.000 15.58 0.00 39.42 3.85
4190 7649 1.592400 CCCACGTTACAGCTCGAGGA 61.592 60.000 15.58 0.00 39.42 3.71
4191 7650 1.153823 CCCACGTTACAGCTCGAGG 60.154 63.158 15.58 0.17 37.50 4.63
4192 7651 1.153823 CCCCACGTTACAGCTCGAG 60.154 63.158 8.45 8.45 0.00 4.04
4193 7652 1.180456 TTCCCCACGTTACAGCTCGA 61.180 55.000 0.00 0.00 0.00 4.04
4195 7654 1.019805 GCTTCCCCACGTTACAGCTC 61.020 60.000 0.00 0.00 0.00 4.09
4196 7655 1.003718 GCTTCCCCACGTTACAGCT 60.004 57.895 0.00 0.00 0.00 4.24
4199 7658 2.357760 GCGCTTCCCCACGTTACA 60.358 61.111 0.00 0.00 0.00 2.41
4201 7660 1.669760 CAAGCGCTTCCCCACGTTA 60.670 57.895 22.21 0.00 0.00 3.18
4202 7661 2.978010 CAAGCGCTTCCCCACGTT 60.978 61.111 22.21 0.00 0.00 3.99
4213 7672 1.131420 CGAGAAGTTCAGCAAGCGC 59.869 57.895 0.00 0.00 38.99 5.92
4214 7673 0.712775 CTCGAGAAGTTCAGCAAGCG 59.287 55.000 6.58 0.00 0.00 4.68
4216 7675 2.064762 CACCTCGAGAAGTTCAGCAAG 58.935 52.381 15.71 0.00 0.00 4.01
4218 7677 1.328279 TCACCTCGAGAAGTTCAGCA 58.672 50.000 15.71 0.00 0.00 4.41
4219 7678 2.094494 TGATCACCTCGAGAAGTTCAGC 60.094 50.000 15.71 0.00 0.00 4.26
4221 7680 3.306088 GGTTGATCACCTCGAGAAGTTCA 60.306 47.826 15.71 12.93 43.29 3.18
4222 7681 3.254892 GGTTGATCACCTCGAGAAGTTC 58.745 50.000 15.71 10.56 43.29 3.01
4223 7682 3.320673 GGTTGATCACCTCGAGAAGTT 57.679 47.619 15.71 0.43 43.29 2.66
4234 7693 1.601903 TGTTTGACGCTGGTTGATCAC 59.398 47.619 0.00 0.00 0.00 3.06
4235 7694 1.601903 GTGTTTGACGCTGGTTGATCA 59.398 47.619 0.00 0.00 0.00 2.92
4236 7695 1.069227 GGTGTTTGACGCTGGTTGATC 60.069 52.381 0.00 0.00 0.00 2.92
4237 7696 0.951558 GGTGTTTGACGCTGGTTGAT 59.048 50.000 0.00 0.00 0.00 2.57
4239 7698 0.738389 AAGGTGTTTGACGCTGGTTG 59.262 50.000 0.00 0.00 0.00 3.77
4240 7699 1.021968 GAAGGTGTTTGACGCTGGTT 58.978 50.000 0.00 0.00 0.00 3.67
4242 7701 0.868406 GAGAAGGTGTTTGACGCTGG 59.132 55.000 0.00 0.00 0.00 4.85
4243 7702 0.508641 CGAGAAGGTGTTTGACGCTG 59.491 55.000 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.