Multiple sequence alignment - TraesCS7B01G013400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G013400 chr7B 100.000 4246 0 0 1 4246 9810362 9814607 0.000000e+00 7841.0
1 TraesCS7B01G013400 chr7B 89.250 1014 58 17 2376 3366 10209765 10210750 0.000000e+00 1221.0
2 TraesCS7B01G013400 chr7B 92.857 826 27 11 867 1692 10208257 10209050 0.000000e+00 1170.0
3 TraesCS7B01G013400 chr7B 88.903 784 63 16 867 1643 10101817 10102583 0.000000e+00 944.0
4 TraesCS7B01G013400 chr7B 93.231 458 30 1 3366 3822 10210780 10211237 0.000000e+00 673.0
5 TraesCS7B01G013400 chr7B 96.685 362 12 0 1790 2151 10209183 10209544 1.690000e-168 603.0
6 TraesCS7B01G013400 chr7B 96.821 346 11 0 1819 2164 10102677 10103022 2.850000e-161 579.0
7 TraesCS7B01G013400 chr7B 84.202 633 49 11 3626 4246 10104121 10104714 6.160000e-158 568.0
8 TraesCS7B01G013400 chr7B 82.283 508 60 13 2696 3195 10103319 10103804 3.050000e-111 412.0
9 TraesCS7B01G013400 chr7B 80.052 386 46 17 3251 3629 10103813 10104174 1.510000e-64 257.0
10 TraesCS7B01G013400 chr7B 90.306 196 11 6 2168 2360 10209782 10209972 2.530000e-62 250.0
11 TraesCS7B01G013400 chr7B 89.231 195 14 4 2168 2360 9812754 9812943 1.970000e-58 237.0
12 TraesCS7B01G013400 chr7B 84.177 158 15 8 3626 3773 10209783 10209940 1.230000e-30 145.0
13 TraesCS7B01G013400 chr7B 82.317 164 16 5 3155 3305 10173995 10174158 3.450000e-26 130.0
14 TraesCS7B01G013400 chr7B 87.273 55 3 1 1727 1777 10102567 10102621 4.580000e-05 60.2
15 TraesCS7B01G013400 chr7B 94.595 37 2 0 1741 1777 10209103 10209139 1.650000e-04 58.4
16 TraesCS7B01G013400 chr7B 100.000 28 0 0 1803 1830 10640110 10640137 8.000000e-03 52.8
17 TraesCS7B01G013400 chr7A 90.409 1126 57 19 575 1696 71135242 71134164 0.000000e+00 1434.0
18 TraesCS7B01G013400 chr7A 88.121 1027 53 11 2371 3362 74602364 74603356 0.000000e+00 1157.0
19 TraesCS7B01G013400 chr7A 88.277 981 52 19 3301 4246 74603435 74604387 0.000000e+00 1116.0
20 TraesCS7B01G013400 chr7A 89.460 797 51 14 910 1701 74601049 74601817 0.000000e+00 976.0
21 TraesCS7B01G013400 chr7A 90.985 599 25 13 1790 2361 71134125 71133529 0.000000e+00 780.0
22 TraesCS7B01G013400 chr7A 91.685 457 18 6 1727 2164 74601877 74602332 2.170000e-172 616.0
23 TraesCS7B01G013400 chr7A 83.725 639 65 20 3626 4237 71120484 71119858 6.160000e-158 568.0
24 TraesCS7B01G013400 chr7A 85.474 475 25 13 2376 2847 71133737 71133304 5.000000e-124 455.0
25 TraesCS7B01G013400 chr7A 86.875 320 34 4 2883 3195 71121118 71120800 6.750000e-93 351.0
26 TraesCS7B01G013400 chr7A 81.299 385 40 20 3251 3628 71120791 71120432 2.500000e-72 283.0
27 TraesCS7B01G013400 chr7A 89.000 100 10 1 3894 3992 70213192 70213093 5.770000e-24 122.0
28 TraesCS7B01G013400 chr7D 91.309 886 47 7 2376 3236 66516142 66515262 0.000000e+00 1182.0
29 TraesCS7B01G013400 chr7D 90.476 798 53 10 892 1681 66538885 66538103 0.000000e+00 1031.0
30 TraesCS7B01G013400 chr7D 91.465 703 32 6 2667 3342 68802957 68803658 0.000000e+00 941.0
31 TraesCS7B01G013400 chr7D 91.218 706 24 20 209 878 68800733 68801436 0.000000e+00 926.0
32 TraesCS7B01G013400 chr7D 94.203 552 32 0 1092 1643 66517144 66516593 0.000000e+00 843.0
33 TraesCS7B01G013400 chr7D 91.790 609 32 3 3608 4204 68803937 68804539 0.000000e+00 832.0
34 TraesCS7B01G013400 chr7D 94.896 529 27 0 1115 1643 68801659 68802187 0.000000e+00 828.0
35 TraesCS7B01G013400 chr7D 90.818 599 39 7 3658 4246 66514935 66514343 0.000000e+00 787.0
36 TraesCS7B01G013400 chr7D 85.870 736 65 17 2476 3195 68921185 68921897 0.000000e+00 747.0
37 TraesCS7B01G013400 chr7D 90.035 572 25 12 1819 2360 66516499 66515930 0.000000e+00 712.0
38 TraesCS7B01G013400 chr7D 92.308 481 17 4 1797 2261 68919464 68919940 0.000000e+00 665.0
39 TraesCS7B01G013400 chr7D 88.969 553 22 17 1819 2334 68802281 68802831 0.000000e+00 647.0
40 TraesCS7B01G013400 chr7D 94.363 408 20 1 1236 1640 68918930 68919337 1.300000e-174 623.0
41 TraesCS7B01G013400 chr7D 94.697 264 14 0 3366 3629 68803745 68804008 1.100000e-110 411.0
42 TraesCS7B01G013400 chr7D 86.612 366 38 9 418 780 68916049 68916406 1.110000e-105 394.0
43 TraesCS7B01G013400 chr7D 83.614 415 49 8 459 855 66517741 66517328 5.180000e-99 372.0
44 TraesCS7B01G013400 chr7D 93.697 238 11 3 841 1078 68801425 68801658 1.880000e-93 353.0
45 TraesCS7B01G013400 chr7D 94.690 226 12 0 3366 3591 66515127 66514902 6.750000e-93 351.0
46 TraesCS7B01G013400 chr7D 84.211 380 40 12 867 1243 68917389 68917751 6.750000e-93 351.0
47 TraesCS7B01G013400 chr7D 78.827 392 46 19 3251 3629 68921906 68922273 3.300000e-56 230.0
48 TraesCS7B01G013400 chr7D 78.920 389 37 16 2438 2808 75271695 75272056 5.530000e-54 222.0
49 TraesCS7B01G013400 chr7D 83.794 253 19 12 3626 3865 66545569 66545326 1.990000e-53 220.0
50 TraesCS7B01G013400 chr7D 87.912 182 19 2 867 1046 66517342 66517162 1.200000e-50 211.0
51 TraesCS7B01G013400 chr7D 76.512 281 53 8 3042 3318 66544944 66544673 1.590000e-29 141.0
52 TraesCS7B01G013400 chr7D 87.000 100 12 1 3894 3992 65791361 65791262 1.250000e-20 111.0
53 TraesCS7B01G013400 chr7D 89.091 55 2 1 1727 1777 68802171 68802225 9.850000e-07 65.8
54 TraesCS7B01G013400 chr1D 84.233 1148 93 31 2375 3479 486925248 486924146 0.000000e+00 1037.0
55 TraesCS7B01G013400 chr1D 92.373 708 44 3 953 1650 486926557 486925850 0.000000e+00 1000.0
56 TraesCS7B01G013400 chr1D 85.738 603 52 17 1790 2360 486925639 486925039 1.310000e-169 606.0
57 TraesCS7B01G013400 chr1D 92.435 423 19 4 3482 3891 486924038 486923616 3.660000e-165 592.0
58 TraesCS7B01G013400 chr1D 88.889 234 23 3 4009 4240 486923511 486923279 6.950000e-73 285.0
59 TraesCS7B01G013400 chr1D 97.059 34 1 0 1671 1704 486925848 486925815 1.650000e-04 58.4
60 TraesCS7B01G013400 chr1B 89.630 810 57 11 867 1650 678116495 678115687 0.000000e+00 1005.0
61 TraesCS7B01G013400 chr1B 82.995 888 74 27 2375 3236 678115100 678114264 0.000000e+00 732.0
62 TraesCS7B01G013400 chr1B 84.603 604 54 21 1790 2360 678115500 678114903 7.970000e-157 564.0
63 TraesCS7B01G013400 chr1B 93.939 297 12 1 3401 3691 678114199 678113903 1.080000e-120 444.0
64 TraesCS7B01G013400 chr1B 94.762 210 9 2 3 211 576945249 576945041 4.090000e-85 326.0
65 TraesCS7B01G013400 chr1B 88.288 222 14 5 4027 4237 678113511 678113291 5.450000e-64 255.0
66 TraesCS7B01G013400 chr1B 97.059 34 1 0 1671 1704 678115685 678115652 1.650000e-04 58.4
67 TraesCS7B01G013400 chr4B 90.778 347 30 2 2391 2736 258794756 258794411 2.990000e-126 462.0
68 TraesCS7B01G013400 chr4B 86.280 328 28 5 2844 3154 258794359 258794032 1.460000e-89 340.0
69 TraesCS7B01G013400 chr4B 93.519 216 12 2 3 217 617182877 617182663 1.900000e-83 320.0
70 TraesCS7B01G013400 chr4B 87.037 270 22 8 2099 2360 258794828 258794564 4.150000e-75 292.0
71 TraesCS7B01G013400 chr2D 85.747 435 25 14 2034 2466 648503095 648502696 3.920000e-115 425.0
72 TraesCS7B01G013400 chr6D 96.117 206 7 1 3 208 456270332 456270536 6.800000e-88 335.0
73 TraesCS7B01G013400 chr6D 84.098 327 34 9 2370 2693 242423284 242422973 2.480000e-77 300.0
74 TraesCS7B01G013400 chr5B 93.333 225 14 1 3 227 362766853 362767076 8.800000e-87 331.0
75 TraesCS7B01G013400 chr5B 94.762 210 9 2 3 211 604246457 604246249 4.090000e-85 326.0
76 TraesCS7B01G013400 chr2B 95.631 206 8 1 3 208 136946204 136946000 3.160000e-86 329.0
77 TraesCS7B01G013400 chr2B 95.169 207 9 1 3 209 222144524 222144319 4.090000e-85 326.0
78 TraesCS7B01G013400 chr4D 95.192 208 9 1 3 210 277344885 277344679 1.140000e-85 327.0
79 TraesCS7B01G013400 chr5D 85.321 327 30 9 2370 2693 235711128 235710817 5.300000e-84 322.0
80 TraesCS7B01G013400 chr5D 89.595 173 11 4 2191 2360 235711092 235710924 3.330000e-51 213.0
81 TraesCS7B01G013400 chr6A 91.416 233 16 4 3 232 129916356 129916125 2.460000e-82 316.0
82 TraesCS7B01G013400 chr2A 87.783 221 11 3 3558 3763 122822771 122822552 1.180000e-60 244.0
83 TraesCS7B01G013400 chr3A 87.330 221 12 3 3558 3763 694350572 694350791 5.490000e-59 239.0
84 TraesCS7B01G013400 chr4A 86.878 221 13 4 3558 3763 297114446 297114665 2.550000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G013400 chr7B 9810362 9814607 4245 False 4039.000000 7841 94.615500 1 4246 2 chr7B.!!$F3 4245
1 TraesCS7B01G013400 chr7B 10208257 10211237 2980 False 588.628571 1221 91.585857 867 3822 7 chr7B.!!$F5 2955
2 TraesCS7B01G013400 chr7B 10101817 10104714 2897 False 470.033333 944 86.589000 867 4246 6 chr7B.!!$F4 3379
3 TraesCS7B01G013400 chr7A 74601049 74604387 3338 False 966.250000 1157 89.385750 910 4246 4 chr7A.!!$F1 3336
4 TraesCS7B01G013400 chr7A 71133304 71135242 1938 True 889.666667 1434 88.956000 575 2847 3 chr7A.!!$R3 2272
5 TraesCS7B01G013400 chr7A 71119858 71121118 1260 True 400.666667 568 83.966333 2883 4237 3 chr7A.!!$R2 1354
6 TraesCS7B01G013400 chr7D 66538103 66538885 782 True 1031.000000 1031 90.476000 892 1681 1 chr7D.!!$R2 789
7 TraesCS7B01G013400 chr7D 66514343 66517741 3398 True 636.857143 1182 90.368714 459 4246 7 chr7D.!!$R3 3787
8 TraesCS7B01G013400 chr7D 68800733 68804539 3806 False 625.475000 941 91.977875 209 4204 8 chr7D.!!$F2 3995
9 TraesCS7B01G013400 chr7D 68916049 68922273 6224 False 501.666667 747 87.031833 418 3629 6 chr7D.!!$F3 3211
10 TraesCS7B01G013400 chr1D 486923279 486926557 3278 True 596.400000 1037 90.121167 953 4240 6 chr1D.!!$R1 3287
11 TraesCS7B01G013400 chr1B 678113291 678116495 3204 True 509.733333 1005 89.419000 867 4237 6 chr1B.!!$R2 3370
12 TraesCS7B01G013400 chr4B 258794032 258794828 796 True 364.666667 462 88.031667 2099 3154 3 chr4B.!!$R2 1055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
829 1805 0.947244 CTGCAGGTGTGTTGAGGAAC 59.053 55.0 5.57 0.0 0.00 3.62 F
1673 3920 0.031585 CGGAACTATCGATTGGGCGA 59.968 55.0 1.71 0.0 45.22 5.54 F
1718 3965 0.042131 TGGGTATCGACTGGGGTTCT 59.958 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 3946 0.042131 AGAACCCCAGTCGATACCCA 59.958 55.000 0.0 0.0 0.00 4.51 R
2980 6809 1.220749 GGTCTGCGTGGGCTGAATA 59.779 57.895 0.0 0.0 46.72 1.75 R
3537 7719 1.967319 TTGTCTTCCACCACAAGCTC 58.033 50.000 0.0 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.762179 TTCATGTCTATGGTCAGGAAACT 57.238 39.130 1.37 0.00 36.51 2.66
26 27 7.252612 TCATGTCTATGGTCAGGAAACTTAA 57.747 36.000 0.00 0.00 34.75 1.85
27 28 7.103641 TCATGTCTATGGTCAGGAAACTTAAC 58.896 38.462 0.00 0.00 34.75 2.01
28 29 5.801380 TGTCTATGGTCAGGAAACTTAACC 58.199 41.667 0.00 0.00 40.21 2.85
30 31 6.012858 TGTCTATGGTCAGGAAACTTAACCAT 60.013 38.462 9.96 9.96 40.21 3.55
31 32 6.539103 GTCTATGGTCAGGAAACTTAACCATC 59.461 42.308 8.50 0.00 40.21 3.51
34 35 5.701224 TGGTCAGGAAACTTAACCATCTTT 58.299 37.500 0.00 0.00 40.21 2.52
35 36 5.534654 TGGTCAGGAAACTTAACCATCTTTG 59.465 40.000 0.00 0.00 40.21 2.77
36 37 5.768164 GGTCAGGAAACTTAACCATCTTTGA 59.232 40.000 0.00 0.00 40.21 2.69
38 39 7.039714 GGTCAGGAAACTTAACCATCTTTGATT 60.040 37.037 0.00 0.00 40.21 2.57
39 40 9.010029 GTCAGGAAACTTAACCATCTTTGATTA 57.990 33.333 0.00 0.00 40.21 1.75
40 41 9.581289 TCAGGAAACTTAACCATCTTTGATTAA 57.419 29.630 0.00 0.00 40.21 1.40
41 42 9.626045 CAGGAAACTTAACCATCTTTGATTAAC 57.374 33.333 0.00 0.00 40.21 2.01
42 43 9.362151 AGGAAACTTAACCATCTTTGATTAACA 57.638 29.630 0.00 0.00 37.44 2.41
43 44 9.974980 GGAAACTTAACCATCTTTGATTAACAA 57.025 29.630 0.00 0.00 36.65 2.83
46 47 8.409358 ACTTAACCATCTTTGATTAACAAGCT 57.591 30.769 0.00 0.00 39.77 3.74
48 49 9.994432 CTTAACCATCTTTGATTAACAAGCTAG 57.006 33.333 0.00 0.00 39.77 3.42
49 50 9.515226 TTAACCATCTTTGATTAACAAGCTAGT 57.485 29.630 0.00 0.00 39.77 2.57
50 51 7.617041 ACCATCTTTGATTAACAAGCTAGTC 57.383 36.000 0.00 0.00 39.77 2.59
51 52 7.168219 ACCATCTTTGATTAACAAGCTAGTCA 58.832 34.615 0.00 0.00 39.77 3.41
52 53 7.665559 ACCATCTTTGATTAACAAGCTAGTCAA 59.334 33.333 0.00 0.00 39.77 3.18
53 54 8.180267 CCATCTTTGATTAACAAGCTAGTCAAG 58.820 37.037 0.00 0.00 39.77 3.02
54 55 8.725148 CATCTTTGATTAACAAGCTAGTCAAGT 58.275 33.333 0.00 0.00 39.77 3.16
55 56 9.944376 ATCTTTGATTAACAAGCTAGTCAAGTA 57.056 29.630 0.00 0.00 39.77 2.24
56 57 9.424319 TCTTTGATTAACAAGCTAGTCAAGTAG 57.576 33.333 0.00 0.00 39.77 2.57
57 58 9.424319 CTTTGATTAACAAGCTAGTCAAGTAGA 57.576 33.333 0.00 0.00 39.77 2.59
58 59 8.988064 TTGATTAACAAGCTAGTCAAGTAGAG 57.012 34.615 0.00 0.00 34.20 2.43
61 62 7.520451 TTAACAAGCTAGTCAAGTAGAGACA 57.480 36.000 0.00 0.00 38.46 3.41
63 64 7.704578 AACAAGCTAGTCAAGTAGAGACATA 57.295 36.000 0.00 0.00 38.46 2.29
64 65 7.090953 ACAAGCTAGTCAAGTAGAGACATAC 57.909 40.000 0.00 0.00 38.46 2.39
65 66 6.887545 ACAAGCTAGTCAAGTAGAGACATACT 59.112 38.462 0.00 0.00 38.46 2.12
67 68 8.556194 CAAGCTAGTCAAGTAGAGACATACTAG 58.444 40.741 0.00 0.00 38.46 2.57
69 70 7.713507 AGCTAGTCAAGTAGAGACATACTAGTG 59.286 40.741 5.39 0.00 37.08 2.74
70 71 7.711772 GCTAGTCAAGTAGAGACATACTAGTGA 59.288 40.741 5.39 0.00 37.08 3.41
71 72 7.852971 AGTCAAGTAGAGACATACTAGTGAC 57.147 40.000 5.39 9.26 40.57 3.67
72 73 6.535865 AGTCAAGTAGAGACATACTAGTGACG 59.464 42.308 5.39 0.00 42.77 4.35
73 74 5.293814 TCAAGTAGAGACATACTAGTGACGC 59.706 44.000 5.39 0.00 34.90 5.19
74 75 5.026038 AGTAGAGACATACTAGTGACGCT 57.974 43.478 5.39 0.17 34.21 5.07
75 76 6.159299 AGTAGAGACATACTAGTGACGCTA 57.841 41.667 5.39 0.00 34.21 4.26
77 78 5.933187 AGAGACATACTAGTGACGCTATG 57.067 43.478 5.39 2.47 0.00 2.23
78 79 5.369833 AGAGACATACTAGTGACGCTATGT 58.630 41.667 5.39 6.01 29.31 2.29
79 80 5.823570 AGAGACATACTAGTGACGCTATGTT 59.176 40.000 5.39 0.00 27.43 2.71
81 82 6.266323 AGACATACTAGTGACGCTATGTTTG 58.734 40.000 5.39 8.49 27.43 2.93
82 83 5.962433 ACATACTAGTGACGCTATGTTTGT 58.038 37.500 5.39 6.18 0.00 2.83
85 86 4.486090 ACTAGTGACGCTATGTTTGTCTG 58.514 43.478 0.00 0.00 33.81 3.51
86 87 3.386768 AGTGACGCTATGTTTGTCTGT 57.613 42.857 0.00 0.00 33.81 3.41
87 88 3.059884 AGTGACGCTATGTTTGTCTGTG 58.940 45.455 0.00 0.00 33.81 3.66
89 90 3.985279 GTGACGCTATGTTTGTCTGTGTA 59.015 43.478 0.00 0.00 33.81 2.90
91 92 5.120208 GTGACGCTATGTTTGTCTGTGTATT 59.880 40.000 0.00 0.00 33.81 1.89
92 93 5.347635 TGACGCTATGTTTGTCTGTGTATTC 59.652 40.000 0.00 0.00 33.81 1.75
93 94 5.234752 ACGCTATGTTTGTCTGTGTATTCA 58.765 37.500 0.00 0.00 0.00 2.57
95 96 7.039270 ACGCTATGTTTGTCTGTGTATTCATA 58.961 34.615 0.00 0.00 0.00 2.15
97 98 7.010091 CGCTATGTTTGTCTGTGTATTCATACA 59.990 37.037 0.00 0.00 40.69 2.29
98 99 8.830580 GCTATGTTTGTCTGTGTATTCATACAT 58.169 33.333 3.00 0.00 44.25 2.29
101 102 9.665719 ATGTTTGTCTGTGTATTCATACATGTA 57.334 29.630 8.27 8.27 44.25 2.29
102 103 9.665719 TGTTTGTCTGTGTATTCATACATGTAT 57.334 29.630 12.75 12.75 44.25 2.29
130 131 8.856153 TGTTTCTGGTTAATACAATTCTAGCA 57.144 30.769 0.00 0.00 0.00 3.49
131 132 9.461312 TGTTTCTGGTTAATACAATTCTAGCAT 57.539 29.630 0.00 0.00 0.00 3.79
132 133 9.722056 GTTTCTGGTTAATACAATTCTAGCATG 57.278 33.333 0.00 0.00 0.00 4.06
133 134 9.679661 TTTCTGGTTAATACAATTCTAGCATGA 57.320 29.630 0.00 0.00 0.00 3.07
135 136 9.851686 TCTGGTTAATACAATTCTAGCATGAAT 57.148 29.630 0.00 0.00 38.19 2.57
205 206 9.660544 ATTATTGCCTTTAGGACATATTTCCTT 57.339 29.630 15.55 1.08 44.22 3.36
206 207 7.588497 ATTGCCTTTAGGACATATTTCCTTC 57.412 36.000 15.55 2.34 44.22 3.46
207 208 6.073447 TGCCTTTAGGACATATTTCCTTCA 57.927 37.500 15.55 0.98 44.22 3.02
208 209 6.672593 TGCCTTTAGGACATATTTCCTTCAT 58.327 36.000 15.55 0.00 44.22 2.57
209 210 6.547141 TGCCTTTAGGACATATTTCCTTCATG 59.453 38.462 15.55 5.91 44.22 3.07
210 211 6.015940 GCCTTTAGGACATATTTCCTTCATGG 60.016 42.308 15.55 13.89 44.22 3.66
211 212 7.290061 CCTTTAGGACATATTTCCTTCATGGA 58.710 38.462 15.55 0.00 44.22 3.41
212 213 7.946776 CCTTTAGGACATATTTCCTTCATGGAT 59.053 37.037 15.55 0.00 44.22 3.41
215 216 9.793259 TTAGGACATATTTCCTTCATGGATAAC 57.207 33.333 15.55 0.00 44.22 1.89
272 273 3.971245 AGACTAGAAGCAAGGACTTGG 57.029 47.619 13.41 0.00 40.74 3.61
295 296 3.116300 CGGTTCATTAGAGGACACATCG 58.884 50.000 0.00 0.00 0.00 3.84
297 298 4.504858 GGTTCATTAGAGGACACATCGTT 58.495 43.478 0.00 0.00 0.00 3.85
304 305 3.283751 AGAGGACACATCGTTAGAGAGG 58.716 50.000 0.00 0.00 0.00 3.69
344 345 3.007506 TCTTTTCAGGGATGCGAACTACA 59.992 43.478 0.00 0.00 0.00 2.74
345 346 3.410631 TTTCAGGGATGCGAACTACAA 57.589 42.857 0.00 0.00 0.00 2.41
357 358 4.288670 CGAACTACAATTCGCTAGGAGA 57.711 45.455 0.00 0.00 44.37 3.71
425 454 2.288213 CCTTGACTCGTAGTGCACTCAA 60.288 50.000 25.56 18.50 0.00 3.02
454 483 2.027837 AGTGCCAAAATCATCTTTGCCC 60.028 45.455 0.00 0.00 35.38 5.36
496 525 5.048991 GGTTTTTATCGTCGCCATCCATATT 60.049 40.000 0.00 0.00 0.00 1.28
662 715 1.078759 ACCTCGCGCGAAGATTCTTG 61.079 55.000 33.10 18.80 0.00 3.02
781 835 7.017645 TCATACTTTACAACGACTAACTCGAC 58.982 38.462 0.00 0.00 46.14 4.20
829 1805 0.947244 CTGCAGGTGTGTTGAGGAAC 59.053 55.000 5.57 0.00 0.00 3.62
855 1831 5.365314 AGGGCAAAAGGAAACAAATCAAGTA 59.635 36.000 0.00 0.00 0.00 2.24
945 1955 2.125147 GCCCACTATGCGAGCACA 60.125 61.111 0.00 0.00 0.00 4.57
950 1960 1.226802 ACTATGCGAGCACAGCGAG 60.227 57.895 2.96 0.00 37.44 5.03
1290 3514 1.492176 CTACCAGGGAGATGGCAATGT 59.508 52.381 0.00 0.00 44.80 2.71
1671 3918 0.249911 AGCGGAACTATCGATTGGGC 60.250 55.000 1.71 4.89 0.00 5.36
1672 3919 1.557443 GCGGAACTATCGATTGGGCG 61.557 60.000 1.71 0.00 0.00 6.13
1673 3920 0.031585 CGGAACTATCGATTGGGCGA 59.968 55.000 1.71 0.00 45.22 5.54
1674 3921 1.537348 CGGAACTATCGATTGGGCGAA 60.537 52.381 1.71 0.00 44.22 4.70
1675 3922 2.767505 GGAACTATCGATTGGGCGAAT 58.232 47.619 1.71 0.00 44.22 3.34
1676 3923 3.139077 GGAACTATCGATTGGGCGAATT 58.861 45.455 1.71 0.00 44.22 2.17
1677 3924 3.058914 GGAACTATCGATTGGGCGAATTG 60.059 47.826 1.71 3.25 44.22 2.32
1678 3925 2.494059 ACTATCGATTGGGCGAATTGG 58.506 47.619 1.71 0.00 44.22 3.16
1679 3926 1.806542 CTATCGATTGGGCGAATTGGG 59.193 52.381 1.71 0.00 44.22 4.12
1680 3927 0.106719 ATCGATTGGGCGAATTGGGT 60.107 50.000 9.29 0.00 44.22 4.51
1681 3928 0.322997 TCGATTGGGCGAATTGGGTT 60.323 50.000 9.29 0.00 37.35 4.11
1682 3929 0.100503 CGATTGGGCGAATTGGGTTC 59.899 55.000 1.75 0.00 0.00 3.62
1683 3930 1.474330 GATTGGGCGAATTGGGTTCT 58.526 50.000 0.00 0.00 34.56 3.01
1684 3931 1.824852 GATTGGGCGAATTGGGTTCTT 59.175 47.619 0.00 0.00 34.56 2.52
1685 3932 0.965439 TTGGGCGAATTGGGTTCTTG 59.035 50.000 0.00 0.00 34.56 3.02
1686 3933 0.897863 TGGGCGAATTGGGTTCTTGG 60.898 55.000 0.00 0.00 34.56 3.61
1687 3934 1.604147 GGGCGAATTGGGTTCTTGGG 61.604 60.000 0.00 0.00 34.56 4.12
1688 3935 0.898326 GGCGAATTGGGTTCTTGGGT 60.898 55.000 0.00 0.00 34.56 4.51
1689 3936 0.243636 GCGAATTGGGTTCTTGGGTG 59.756 55.000 0.00 0.00 34.56 4.61
1690 3937 1.616159 CGAATTGGGTTCTTGGGTGT 58.384 50.000 0.00 0.00 34.56 4.16
1691 3938 1.539827 CGAATTGGGTTCTTGGGTGTC 59.460 52.381 0.00 0.00 34.56 3.67
1692 3939 1.539827 GAATTGGGTTCTTGGGTGTCG 59.460 52.381 0.00 0.00 33.89 4.35
1693 3940 0.476771 ATTGGGTTCTTGGGTGTCGT 59.523 50.000 0.00 0.00 0.00 4.34
1694 3941 0.256464 TTGGGTTCTTGGGTGTCGTT 59.744 50.000 0.00 0.00 0.00 3.85
1695 3942 1.129917 TGGGTTCTTGGGTGTCGTTA 58.870 50.000 0.00 0.00 0.00 3.18
1696 3943 1.071071 TGGGTTCTTGGGTGTCGTTAG 59.929 52.381 0.00 0.00 0.00 2.34
1697 3944 1.071228 GGGTTCTTGGGTGTCGTTAGT 59.929 52.381 0.00 0.00 0.00 2.24
1698 3945 2.486013 GGGTTCTTGGGTGTCGTTAGTT 60.486 50.000 0.00 0.00 0.00 2.24
1699 3946 3.208594 GGTTCTTGGGTGTCGTTAGTTT 58.791 45.455 0.00 0.00 0.00 2.66
1700 3947 3.002965 GGTTCTTGGGTGTCGTTAGTTTG 59.997 47.826 0.00 0.00 0.00 2.93
1701 3948 2.841215 TCTTGGGTGTCGTTAGTTTGG 58.159 47.619 0.00 0.00 0.00 3.28
1702 3949 1.877443 CTTGGGTGTCGTTAGTTTGGG 59.123 52.381 0.00 0.00 0.00 4.12
1703 3950 0.838608 TGGGTGTCGTTAGTTTGGGT 59.161 50.000 0.00 0.00 0.00 4.51
1704 3951 2.045524 TGGGTGTCGTTAGTTTGGGTA 58.954 47.619 0.00 0.00 0.00 3.69
1705 3952 2.638855 TGGGTGTCGTTAGTTTGGGTAT 59.361 45.455 0.00 0.00 0.00 2.73
1706 3953 3.264947 GGGTGTCGTTAGTTTGGGTATC 58.735 50.000 0.00 0.00 0.00 2.24
1707 3954 2.925563 GGTGTCGTTAGTTTGGGTATCG 59.074 50.000 0.00 0.00 0.00 2.92
1708 3955 3.367292 GGTGTCGTTAGTTTGGGTATCGA 60.367 47.826 0.00 0.00 0.00 3.59
1709 3956 3.609807 GTGTCGTTAGTTTGGGTATCGAC 59.390 47.826 0.00 0.00 40.56 4.20
1710 3957 3.507233 TGTCGTTAGTTTGGGTATCGACT 59.493 43.478 14.02 0.00 40.68 4.18
1711 3958 3.855950 GTCGTTAGTTTGGGTATCGACTG 59.144 47.826 0.00 0.00 38.61 3.51
1712 3959 3.119388 TCGTTAGTTTGGGTATCGACTGG 60.119 47.826 0.00 0.00 0.00 4.00
1713 3960 3.528532 GTTAGTTTGGGTATCGACTGGG 58.471 50.000 0.00 0.00 0.00 4.45
1714 3961 0.909623 AGTTTGGGTATCGACTGGGG 59.090 55.000 0.00 0.00 0.00 4.96
1715 3962 0.616891 GTTTGGGTATCGACTGGGGT 59.383 55.000 0.00 0.00 0.00 4.95
1716 3963 1.003928 GTTTGGGTATCGACTGGGGTT 59.996 52.381 0.00 0.00 0.00 4.11
1717 3964 0.906775 TTGGGTATCGACTGGGGTTC 59.093 55.000 0.00 0.00 0.00 3.62
1718 3965 0.042131 TGGGTATCGACTGGGGTTCT 59.958 55.000 0.00 0.00 0.00 3.01
1719 3966 1.201424 GGGTATCGACTGGGGTTCTT 58.799 55.000 0.00 0.00 0.00 2.52
1720 3967 1.558294 GGGTATCGACTGGGGTTCTTT 59.442 52.381 0.00 0.00 0.00 2.52
1721 3968 2.419713 GGGTATCGACTGGGGTTCTTTC 60.420 54.545 0.00 0.00 0.00 2.62
1722 3969 2.419713 GGTATCGACTGGGGTTCTTTCC 60.420 54.545 0.00 0.00 0.00 3.13
1723 3970 1.358152 ATCGACTGGGGTTCTTTCCA 58.642 50.000 0.00 0.00 0.00 3.53
1724 3971 1.133363 TCGACTGGGGTTCTTTCCAA 58.867 50.000 0.00 0.00 31.97 3.53
1725 3972 1.491332 TCGACTGGGGTTCTTTCCAAA 59.509 47.619 0.00 0.00 31.97 3.28
1726 3973 2.107552 TCGACTGGGGTTCTTTCCAAAT 59.892 45.455 0.00 0.00 31.97 2.32
1727 3974 2.890945 CGACTGGGGTTCTTTCCAAATT 59.109 45.455 0.00 0.00 31.97 1.82
1728 3975 3.057526 CGACTGGGGTTCTTTCCAAATTC 60.058 47.826 0.00 0.00 31.97 2.17
1729 3976 4.152647 GACTGGGGTTCTTTCCAAATTCT 58.847 43.478 0.00 0.00 31.97 2.40
1730 3977 4.556697 ACTGGGGTTCTTTCCAAATTCTT 58.443 39.130 0.00 0.00 31.97 2.52
1731 3978 4.344968 ACTGGGGTTCTTTCCAAATTCTTG 59.655 41.667 0.00 0.00 31.97 3.02
1732 3979 4.551671 TGGGGTTCTTTCCAAATTCTTGA 58.448 39.130 0.00 0.00 34.14 3.02
1733 3980 4.588528 TGGGGTTCTTTCCAAATTCTTGAG 59.411 41.667 0.00 0.00 34.14 3.02
1734 3981 4.588951 GGGGTTCTTTCCAAATTCTTGAGT 59.411 41.667 0.00 0.00 34.14 3.41
1735 3982 5.279006 GGGGTTCTTTCCAAATTCTTGAGTC 60.279 44.000 0.00 0.00 34.14 3.36
1736 3983 5.536538 GGGTTCTTTCCAAATTCTTGAGTCT 59.463 40.000 0.00 0.00 34.14 3.24
1737 3984 6.040955 GGGTTCTTTCCAAATTCTTGAGTCTT 59.959 38.462 0.00 0.00 34.14 3.01
1738 3985 7.142021 GGTTCTTTCCAAATTCTTGAGTCTTC 58.858 38.462 0.00 0.00 34.14 2.87
1739 3986 6.884280 TCTTTCCAAATTCTTGAGTCTTCC 57.116 37.500 0.00 0.00 34.14 3.46
1746 3993 6.317857 CAAATTCTTGAGTCTTCCCGAATTC 58.682 40.000 0.00 0.00 33.65 2.17
1784 4145 5.278758 CGTTACAATTGGGGATTTGTGTTCT 60.279 40.000 10.83 0.00 0.00 3.01
1785 4146 4.871933 ACAATTGGGGATTTGTGTTCTC 57.128 40.909 10.83 0.00 0.00 2.87
1786 4147 3.255642 ACAATTGGGGATTTGTGTTCTCG 59.744 43.478 10.83 0.00 0.00 4.04
1787 4148 2.940994 TTGGGGATTTGTGTTCTCGA 57.059 45.000 0.00 0.00 0.00 4.04
1930 4359 3.259633 AACTTCGCCTGGGCCTCAG 62.260 63.158 4.53 12.83 43.00 3.35
2154 4594 4.120589 GCCATTCCTAACTTCCTACTTCG 58.879 47.826 0.00 0.00 0.00 3.79
2193 4671 7.837898 GTTTACTGAAACTGTTGTATTCTGC 57.162 36.000 0.00 0.00 41.55 4.26
2194 4672 7.414436 GTTTACTGAAACTGTTGTATTCTGCA 58.586 34.615 0.00 0.00 41.55 4.41
2200 4678 3.480470 ACTGTTGTATTCTGCAACTGCT 58.520 40.909 12.42 1.83 44.27 4.24
2209 4687 4.883026 GCAACTGCTGCCAATCTG 57.117 55.556 0.00 0.00 46.13 2.90
2211 4689 1.874345 GCAACTGCTGCCAATCTGCT 61.874 55.000 0.00 0.00 46.13 4.24
2213 4691 0.886563 AACTGCTGCCAATCTGCTTC 59.113 50.000 0.00 0.00 39.95 3.86
2214 4692 0.251033 ACTGCTGCCAATCTGCTTCA 60.251 50.000 0.00 0.00 39.95 3.02
2215 4693 0.452184 CTGCTGCCAATCTGCTTCAG 59.548 55.000 0.00 0.00 39.95 3.02
2216 4694 0.251033 TGCTGCCAATCTGCTTCAGT 60.251 50.000 0.00 0.00 39.95 3.41
2219 4697 2.097142 GCTGCCAATCTGCTTCAGTTAG 59.903 50.000 0.00 0.00 36.79 2.34
2221 4699 2.305635 TGCCAATCTGCTTCAGTTAGGA 59.694 45.455 0.00 0.00 32.61 2.94
2223 4701 3.950395 GCCAATCTGCTTCAGTTAGGAAT 59.050 43.478 0.00 0.00 32.61 3.01
2225 4703 4.337555 CCAATCTGCTTCAGTTAGGAATGG 59.662 45.833 0.00 0.00 32.61 3.16
2226 4704 3.634397 TCTGCTTCAGTTAGGAATGGG 57.366 47.619 0.00 0.00 32.61 4.00
2229 4707 2.239654 TGCTTCAGTTAGGAATGGGGAG 59.760 50.000 0.00 0.00 0.00 4.30
2230 4708 2.239907 GCTTCAGTTAGGAATGGGGAGT 59.760 50.000 0.00 0.00 0.00 3.85
2231 4709 3.308473 GCTTCAGTTAGGAATGGGGAGTT 60.308 47.826 0.00 0.00 0.00 3.01
2232 4710 4.265073 CTTCAGTTAGGAATGGGGAGTTG 58.735 47.826 0.00 0.00 0.00 3.16
2233 4711 3.256704 TCAGTTAGGAATGGGGAGTTGT 58.743 45.455 0.00 0.00 0.00 3.32
2234 4712 3.009033 TCAGTTAGGAATGGGGAGTTGTG 59.991 47.826 0.00 0.00 0.00 3.33
2237 4715 0.405585 AGGAATGGGGAGTTGTGTGG 59.594 55.000 0.00 0.00 0.00 4.17
2239 4717 1.534729 GAATGGGGAGTTGTGTGGAC 58.465 55.000 0.00 0.00 0.00 4.02
2240 4718 1.073923 GAATGGGGAGTTGTGTGGACT 59.926 52.381 0.00 0.00 0.00 3.85
2242 4720 0.986019 TGGGGAGTTGTGTGGACTGT 60.986 55.000 0.00 0.00 0.00 3.55
2243 4721 0.182775 GGGGAGTTGTGTGGACTGTT 59.817 55.000 0.00 0.00 0.00 3.16
2244 4722 1.308998 GGGAGTTGTGTGGACTGTTG 58.691 55.000 0.00 0.00 0.00 3.33
2340 4818 8.982723 TGCTAGAAGGTAATCTGAATCTAGTTT 58.017 33.333 0.00 0.00 38.90 2.66
2341 4819 9.255304 GCTAGAAGGTAATCTGAATCTAGTTTG 57.745 37.037 0.00 0.00 38.90 2.93
2346 4824 8.567285 AGGTAATCTGAATCTAGTTTGTTTGG 57.433 34.615 0.00 0.00 0.00 3.28
2347 4825 7.611855 AGGTAATCTGAATCTAGTTTGTTTGGG 59.388 37.037 0.00 0.00 0.00 4.12
2348 4826 6.840780 AATCTGAATCTAGTTTGTTTGGGG 57.159 37.500 0.00 0.00 0.00 4.96
2349 4827 5.576563 TCTGAATCTAGTTTGTTTGGGGA 57.423 39.130 0.00 0.00 0.00 4.81
2350 4828 5.947663 TCTGAATCTAGTTTGTTTGGGGAA 58.052 37.500 0.00 0.00 0.00 3.97
2352 4830 7.010160 TCTGAATCTAGTTTGTTTGGGGAAAT 58.990 34.615 0.00 0.00 0.00 2.17
2353 4831 7.176690 TCTGAATCTAGTTTGTTTGGGGAAATC 59.823 37.037 0.00 0.00 0.00 2.17
2354 4832 6.780031 TGAATCTAGTTTGTTTGGGGAAATCA 59.220 34.615 0.00 0.00 0.00 2.57
2357 4835 8.893563 ATCTAGTTTGTTTGGGGAAATCATAA 57.106 30.769 0.00 0.00 0.00 1.90
2358 4836 8.117813 TCTAGTTTGTTTGGGGAAATCATAAC 57.882 34.615 0.00 0.00 0.00 1.89
2359 4837 6.739331 AGTTTGTTTGGGGAAATCATAACA 57.261 33.333 0.00 0.00 0.00 2.41
2362 4840 5.975693 TGTTTGGGGAAATCATAACAGTC 57.024 39.130 0.00 0.00 0.00 3.51
2363 4841 4.457603 TGTTTGGGGAAATCATAACAGTCG 59.542 41.667 0.00 0.00 0.00 4.18
2364 4842 3.275617 TGGGGAAATCATAACAGTCGG 57.724 47.619 0.00 0.00 0.00 4.79
2365 4843 2.574369 TGGGGAAATCATAACAGTCGGT 59.426 45.455 0.00 0.00 0.00 4.69
2366 4844 3.203716 GGGGAAATCATAACAGTCGGTC 58.796 50.000 0.00 0.00 0.00 4.79
2367 4845 3.118371 GGGGAAATCATAACAGTCGGTCT 60.118 47.826 0.00 0.00 0.00 3.85
2368 4846 4.514401 GGGAAATCATAACAGTCGGTCTT 58.486 43.478 0.00 0.00 0.00 3.01
2369 4847 4.332819 GGGAAATCATAACAGTCGGTCTTG 59.667 45.833 0.00 0.00 0.00 3.02
2372 4850 2.683968 TCATAACAGTCGGTCTTGTGC 58.316 47.619 0.00 0.00 0.00 4.57
2476 4955 3.125316 GTGTGGACTGTTGCAGTATTAGC 59.875 47.826 1.43 0.00 45.44 3.09
2530 6269 7.969536 AGTATTTGCATTATGCCTACAGTAG 57.030 36.000 15.06 0.00 44.23 2.57
2565 6308 9.841880 GAAGGTAATCTAAATCCAGTTTGTTTC 57.158 33.333 0.00 0.00 0.00 2.78
2604 6352 7.175104 ACATATTCACATTAAACCCTGACACT 58.825 34.615 0.00 0.00 0.00 3.55
2608 6356 5.063204 TCACATTAAACCCTGACACTGAAG 58.937 41.667 0.00 0.00 0.00 3.02
2687 6473 6.565999 GCACTATTTGTCGCTTGTAGAAACTT 60.566 38.462 0.00 0.00 0.00 2.66
2689 6475 7.321271 CACTATTTGTCGCTTGTAGAAACTTTG 59.679 37.037 0.00 0.00 0.00 2.77
2776 6578 9.410556 ACTATAAATTCTTTGAACAACATGTGC 57.589 29.630 0.00 0.00 0.00 4.57
2879 6685 3.275617 TTTTGTGCACAGTCCTACAGT 57.724 42.857 20.59 0.00 0.00 3.55
2880 6686 3.275617 TTTGTGCACAGTCCTACAGTT 57.724 42.857 20.59 0.00 0.00 3.16
2881 6687 4.409718 TTTGTGCACAGTCCTACAGTTA 57.590 40.909 20.59 0.00 0.00 2.24
2884 6690 4.566004 TGTGCACAGTCCTACAGTTATTC 58.434 43.478 17.42 0.00 0.00 1.75
2885 6691 4.039852 TGTGCACAGTCCTACAGTTATTCA 59.960 41.667 17.42 0.00 0.00 2.57
2886 6692 5.178797 GTGCACAGTCCTACAGTTATTCAT 58.821 41.667 13.17 0.00 0.00 2.57
2937 6766 8.553459 AATTATCGATCTTCTCAAACTGTTGT 57.447 30.769 0.00 0.00 36.07 3.32
2980 6809 6.292150 CCTAACTTCCTCACTTTCTGTTCTT 58.708 40.000 0.00 0.00 0.00 2.52
3063 6915 2.168496 CGGTCCACCTCTTCAGAAGTA 58.832 52.381 10.09 0.00 0.00 2.24
3116 6969 8.842358 AATTCAGAACTGCATTTTTCATTGAT 57.158 26.923 0.00 0.00 0.00 2.57
3157 7012 4.621747 GCCTCTTGTGTCTGTTAGCATAGT 60.622 45.833 0.00 0.00 0.00 2.12
3260 7124 2.627945 TGGCGTTGGTCTGTAATGATC 58.372 47.619 0.00 0.00 0.00 2.92
3351 7261 4.650734 TCTGTGAACAGTTATGCAATGGA 58.349 39.130 10.14 0.00 44.12 3.41
3415 7486 8.553459 AATGTTACTGGTTTCTCTTAGATGTG 57.447 34.615 0.00 0.00 0.00 3.21
3503 7685 5.626543 CGGTATTATTTGCTGCATTGACATC 59.373 40.000 1.84 0.00 0.00 3.06
3537 7719 7.869429 GGGATTTATTTTAATGGAGCACTGATG 59.131 37.037 0.00 0.00 0.00 3.07
3580 7762 7.856145 ATGCTAATCTTCAGTTAGGAGTTTG 57.144 36.000 0.00 0.00 33.85 2.93
3891 8238 9.045223 GCACAGATATTTAAATTTCCCCATTTC 57.955 33.333 5.91 0.00 0.00 2.17
4065 8422 4.759693 CCAGGTTTTGTACATAAGCTGTCA 59.240 41.667 35.09 5.89 42.32 3.58
4082 8439 4.811024 GCTGTCATCTTCGTCAATTATCCA 59.189 41.667 0.00 0.00 0.00 3.41
4083 8440 5.294306 GCTGTCATCTTCGTCAATTATCCAA 59.706 40.000 0.00 0.00 0.00 3.53
4084 8441 6.017605 GCTGTCATCTTCGTCAATTATCCAAT 60.018 38.462 0.00 0.00 0.00 3.16
4085 8442 7.171508 GCTGTCATCTTCGTCAATTATCCAATA 59.828 37.037 0.00 0.00 0.00 1.90
4130 8497 6.656902 ACATAGATCTTCTCCAAAGATTGCA 58.343 36.000 0.00 0.00 37.14 4.08
4166 8537 4.281182 TCTTACTCTTTCACTGTCTGGTCC 59.719 45.833 0.00 0.00 0.00 4.46
4228 8599 8.346300 CAATACAGCGTAGAGAAAGATAAGAGA 58.654 37.037 0.00 0.00 0.00 3.10
4230 8601 7.159322 ACAGCGTAGAGAAAGATAAGAGAAA 57.841 36.000 0.00 0.00 0.00 2.52
4240 8611 8.066612 AGAAAGATAAGAGAAAGACTCCTGAG 57.933 38.462 0.00 0.00 45.96 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.319048 AGTTTCCTGACCATAGACATGAAT 57.681 37.500 0.00 0.00 33.67 2.57
2 3 5.762179 AAGTTTCCTGACCATAGACATGA 57.238 39.130 0.00 0.00 33.67 3.07
3 4 6.316390 GGTTAAGTTTCCTGACCATAGACATG 59.684 42.308 0.00 0.00 31.32 3.21
4 5 6.012858 TGGTTAAGTTTCCTGACCATAGACAT 60.013 38.462 0.00 0.00 34.52 3.06
6 7 5.801380 TGGTTAAGTTTCCTGACCATAGAC 58.199 41.667 0.00 0.00 34.52 2.59
7 8 6.443849 AGATGGTTAAGTTTCCTGACCATAGA 59.556 38.462 6.32 0.00 43.30 1.98
8 9 6.653989 AGATGGTTAAGTTTCCTGACCATAG 58.346 40.000 6.32 0.00 43.30 2.23
10 11 5.520748 AGATGGTTAAGTTTCCTGACCAT 57.479 39.130 6.05 6.05 44.70 3.55
13 14 6.877611 TCAAAGATGGTTAAGTTTCCTGAC 57.122 37.500 0.00 0.00 0.00 3.51
14 15 9.581289 TTAATCAAAGATGGTTAAGTTTCCTGA 57.419 29.630 0.00 0.00 37.24 3.86
15 16 9.626045 GTTAATCAAAGATGGTTAAGTTTCCTG 57.374 33.333 0.00 0.00 41.55 3.86
16 17 9.362151 TGTTAATCAAAGATGGTTAAGTTTCCT 57.638 29.630 0.00 0.00 41.55 3.36
17 18 9.974980 TTGTTAATCAAAGATGGTTAAGTTTCC 57.025 29.630 0.00 0.00 41.55 3.13
20 21 8.860088 AGCTTGTTAATCAAAGATGGTTAAGTT 58.140 29.630 0.00 0.00 41.55 2.66
21 22 8.409358 AGCTTGTTAATCAAAGATGGTTAAGT 57.591 30.769 0.00 0.00 41.55 2.24
22 23 9.994432 CTAGCTTGTTAATCAAAGATGGTTAAG 57.006 33.333 0.00 0.00 41.55 1.85
23 24 9.515226 ACTAGCTTGTTAATCAAAGATGGTTAA 57.485 29.630 0.00 0.00 39.28 2.01
26 27 7.168219 TGACTAGCTTGTTAATCAAAGATGGT 58.832 34.615 1.43 3.58 35.48 3.55
27 28 7.615582 TGACTAGCTTGTTAATCAAAGATGG 57.384 36.000 1.43 0.00 35.48 3.51
28 29 8.725148 ACTTGACTAGCTTGTTAATCAAAGATG 58.275 33.333 6.01 0.00 35.48 2.90
30 31 9.424319 CTACTTGACTAGCTTGTTAATCAAAGA 57.576 33.333 6.01 0.00 35.48 2.52
31 32 9.424319 TCTACTTGACTAGCTTGTTAATCAAAG 57.576 33.333 6.01 5.13 35.48 2.77
34 35 8.244802 GTCTCTACTTGACTAGCTTGTTAATCA 58.755 37.037 6.01 0.00 0.00 2.57
35 36 8.244802 TGTCTCTACTTGACTAGCTTGTTAATC 58.755 37.037 6.01 0.00 35.63 1.75
36 37 8.123639 TGTCTCTACTTGACTAGCTTGTTAAT 57.876 34.615 6.01 1.00 35.63 1.40
38 39 7.704578 ATGTCTCTACTTGACTAGCTTGTTA 57.295 36.000 1.43 0.00 35.63 2.41
39 40 6.597832 ATGTCTCTACTTGACTAGCTTGTT 57.402 37.500 1.43 0.00 35.63 2.83
40 41 6.887545 AGTATGTCTCTACTTGACTAGCTTGT 59.112 38.462 0.00 0.00 35.63 3.16
41 42 7.328277 AGTATGTCTCTACTTGACTAGCTTG 57.672 40.000 0.00 0.00 35.63 4.01
42 43 8.269317 ACTAGTATGTCTCTACTTGACTAGCTT 58.731 37.037 0.00 0.00 38.86 3.74
43 44 7.713507 CACTAGTATGTCTCTACTTGACTAGCT 59.286 40.741 0.00 0.00 38.86 3.32
44 45 7.711772 TCACTAGTATGTCTCTACTTGACTAGC 59.288 40.741 0.00 0.00 38.86 3.42
46 47 7.705752 CGTCACTAGTATGTCTCTACTTGACTA 59.294 40.741 0.00 0.00 37.34 2.59
48 49 6.707711 CGTCACTAGTATGTCTCTACTTGAC 58.292 44.000 0.00 6.21 36.75 3.18
49 50 5.293814 GCGTCACTAGTATGTCTCTACTTGA 59.706 44.000 0.00 0.00 33.96 3.02
50 51 5.294799 AGCGTCACTAGTATGTCTCTACTTG 59.705 44.000 0.00 0.00 33.96 3.16
51 52 5.430007 AGCGTCACTAGTATGTCTCTACTT 58.570 41.667 0.00 0.00 33.96 2.24
52 53 5.026038 AGCGTCACTAGTATGTCTCTACT 57.974 43.478 0.00 0.00 36.04 2.57
53 54 6.424509 ACATAGCGTCACTAGTATGTCTCTAC 59.575 42.308 0.00 0.00 31.84 2.59
54 55 6.522946 ACATAGCGTCACTAGTATGTCTCTA 58.477 40.000 0.00 0.00 31.84 2.43
55 56 5.369833 ACATAGCGTCACTAGTATGTCTCT 58.630 41.667 0.00 0.00 31.84 3.10
56 57 5.676532 ACATAGCGTCACTAGTATGTCTC 57.323 43.478 0.00 0.00 31.84 3.36
57 58 6.127703 ACAAACATAGCGTCACTAGTATGTCT 60.128 38.462 7.07 0.93 35.52 3.41
58 59 6.034591 ACAAACATAGCGTCACTAGTATGTC 58.965 40.000 7.07 0.00 35.52 3.06
61 62 6.127703 ACAGACAAACATAGCGTCACTAGTAT 60.128 38.462 0.00 0.00 33.29 2.12
63 64 4.022242 ACAGACAAACATAGCGTCACTAGT 60.022 41.667 0.00 0.00 33.29 2.57
64 65 4.324669 CACAGACAAACATAGCGTCACTAG 59.675 45.833 0.00 0.00 33.29 2.57
65 66 4.234574 CACAGACAAACATAGCGTCACTA 58.765 43.478 0.00 0.00 34.64 2.74
67 68 2.800544 ACACAGACAAACATAGCGTCAC 59.199 45.455 0.00 0.00 31.92 3.67
69 70 5.347635 TGAATACACAGACAAACATAGCGTC 59.652 40.000 0.00 0.00 0.00 5.19
70 71 5.234752 TGAATACACAGACAAACATAGCGT 58.765 37.500 0.00 0.00 0.00 5.07
71 72 5.778161 TGAATACACAGACAAACATAGCG 57.222 39.130 0.00 0.00 0.00 4.26
72 73 8.196802 TGTATGAATACACAGACAAACATAGC 57.803 34.615 0.00 0.00 38.70 2.97
74 75 9.665719 ACATGTATGAATACACAGACAAACATA 57.334 29.630 5.31 0.00 45.11 2.29
75 76 8.565896 ACATGTATGAATACACAGACAAACAT 57.434 30.769 5.31 0.00 45.11 2.71
104 105 9.461312 TGCTAGAATTGTATTAACCAGAAACAT 57.539 29.630 0.00 0.00 0.00 2.71
105 106 8.856153 TGCTAGAATTGTATTAACCAGAAACA 57.144 30.769 0.00 0.00 0.00 2.83
106 107 9.722056 CATGCTAGAATTGTATTAACCAGAAAC 57.278 33.333 0.00 0.00 0.00 2.78
107 108 9.679661 TCATGCTAGAATTGTATTAACCAGAAA 57.320 29.630 0.00 0.00 0.00 2.52
108 109 9.679661 TTCATGCTAGAATTGTATTAACCAGAA 57.320 29.630 0.00 0.00 0.00 3.02
109 110 9.851686 ATTCATGCTAGAATTGTATTAACCAGA 57.148 29.630 0.00 0.00 34.70 3.86
272 273 3.587797 TGTGTCCTCTAATGAACCGAC 57.412 47.619 0.00 0.00 0.00 4.79
295 296 5.754543 AGATTAGTACGCACCTCTCTAAC 57.245 43.478 0.00 0.00 0.00 2.34
297 298 6.766429 TGATAGATTAGTACGCACCTCTCTA 58.234 40.000 0.00 0.00 0.00 2.43
304 305 8.575565 TGAAAAGATGATAGATTAGTACGCAC 57.424 34.615 0.00 0.00 0.00 5.34
344 345 3.334583 TTGCAACTCTCCTAGCGAATT 57.665 42.857 0.00 0.00 0.00 2.17
345 346 3.334583 TTTGCAACTCTCCTAGCGAAT 57.665 42.857 0.00 0.00 0.00 3.34
352 353 3.152341 CAACCTCATTTGCAACTCTCCT 58.848 45.455 0.00 0.00 0.00 3.69
387 388 9.144747 CGAGTCAAGGATTACATCAAATATAGG 57.855 37.037 0.00 0.00 0.00 2.57
425 454 4.529377 AGATGATTTTGGCACTTCAATGGT 59.471 37.500 0.00 0.00 0.00 3.55
496 525 0.836400 GGGGGAGCCCTCGAATGATA 60.836 60.000 5.38 0.00 44.66 2.15
662 715 2.561373 CCCTCGGCGCTTGTTTTC 59.439 61.111 7.64 0.00 0.00 2.29
781 835 1.474017 CCTATTCTACGTTCACCGCG 58.526 55.000 0.00 0.00 41.42 6.46
829 1805 2.998316 TTTGTTTCCTTTTGCCCTGG 57.002 45.000 0.00 0.00 0.00 4.45
863 1863 1.554617 CCCACATGATTTGTTTCCCCC 59.445 52.381 0.00 0.00 36.00 5.40
1243 3467 2.753966 CGCCCAAGCCGAGTTCATG 61.754 63.158 0.00 0.00 34.57 3.07
1290 3514 1.076014 TGGAGGAGCACGTACTGGA 59.924 57.895 0.00 0.00 0.00 3.86
1388 3612 4.554363 CCAGGGCTCGTAGTCGCG 62.554 72.222 0.00 0.00 36.96 5.87
1671 3918 1.539827 GACACCCAAGAACCCAATTCG 59.460 52.381 0.00 0.00 42.69 3.34
1672 3919 1.539827 CGACACCCAAGAACCCAATTC 59.460 52.381 0.00 0.00 37.62 2.17
1673 3920 1.133606 ACGACACCCAAGAACCCAATT 60.134 47.619 0.00 0.00 0.00 2.32
1674 3921 0.476771 ACGACACCCAAGAACCCAAT 59.523 50.000 0.00 0.00 0.00 3.16
1675 3922 0.256464 AACGACACCCAAGAACCCAA 59.744 50.000 0.00 0.00 0.00 4.12
1676 3923 1.071071 CTAACGACACCCAAGAACCCA 59.929 52.381 0.00 0.00 0.00 4.51
1677 3924 1.071228 ACTAACGACACCCAAGAACCC 59.929 52.381 0.00 0.00 0.00 4.11
1678 3925 2.538512 ACTAACGACACCCAAGAACC 57.461 50.000 0.00 0.00 0.00 3.62
1679 3926 3.002965 CCAAACTAACGACACCCAAGAAC 59.997 47.826 0.00 0.00 0.00 3.01
1680 3927 3.207778 CCAAACTAACGACACCCAAGAA 58.792 45.455 0.00 0.00 0.00 2.52
1681 3928 2.485835 CCCAAACTAACGACACCCAAGA 60.486 50.000 0.00 0.00 0.00 3.02
1682 3929 1.877443 CCCAAACTAACGACACCCAAG 59.123 52.381 0.00 0.00 0.00 3.61
1683 3930 1.212441 ACCCAAACTAACGACACCCAA 59.788 47.619 0.00 0.00 0.00 4.12
1684 3931 0.838608 ACCCAAACTAACGACACCCA 59.161 50.000 0.00 0.00 0.00 4.51
1685 3932 2.837532 TACCCAAACTAACGACACCC 57.162 50.000 0.00 0.00 0.00 4.61
1686 3933 2.925563 CGATACCCAAACTAACGACACC 59.074 50.000 0.00 0.00 0.00 4.16
1687 3934 3.609807 GTCGATACCCAAACTAACGACAC 59.390 47.826 0.00 0.00 44.72 3.67
1688 3935 3.507233 AGTCGATACCCAAACTAACGACA 59.493 43.478 16.52 0.00 46.70 4.35
1689 3936 3.855950 CAGTCGATACCCAAACTAACGAC 59.144 47.826 0.00 0.00 45.36 4.34
1690 3937 3.119388 CCAGTCGATACCCAAACTAACGA 60.119 47.826 0.00 0.00 0.00 3.85
1691 3938 3.184541 CCAGTCGATACCCAAACTAACG 58.815 50.000 0.00 0.00 0.00 3.18
1692 3939 3.528532 CCCAGTCGATACCCAAACTAAC 58.471 50.000 0.00 0.00 0.00 2.34
1693 3940 2.502538 CCCCAGTCGATACCCAAACTAA 59.497 50.000 0.00 0.00 0.00 2.24
1694 3941 2.112998 CCCCAGTCGATACCCAAACTA 58.887 52.381 0.00 0.00 0.00 2.24
1695 3942 0.909623 CCCCAGTCGATACCCAAACT 59.090 55.000 0.00 0.00 0.00 2.66
1696 3943 0.616891 ACCCCAGTCGATACCCAAAC 59.383 55.000 0.00 0.00 0.00 2.93
1697 3944 1.279846 GAACCCCAGTCGATACCCAAA 59.720 52.381 0.00 0.00 0.00 3.28
1698 3945 0.906775 GAACCCCAGTCGATACCCAA 59.093 55.000 0.00 0.00 0.00 4.12
1699 3946 0.042131 AGAACCCCAGTCGATACCCA 59.958 55.000 0.00 0.00 0.00 4.51
1700 3947 1.201424 AAGAACCCCAGTCGATACCC 58.799 55.000 0.00 0.00 0.00 3.69
1701 3948 2.419713 GGAAAGAACCCCAGTCGATACC 60.420 54.545 0.00 0.00 0.00 2.73
1702 3949 2.235402 TGGAAAGAACCCCAGTCGATAC 59.765 50.000 0.00 0.00 0.00 2.24
1703 3950 2.542550 TGGAAAGAACCCCAGTCGATA 58.457 47.619 0.00 0.00 0.00 2.92
1704 3951 1.358152 TGGAAAGAACCCCAGTCGAT 58.642 50.000 0.00 0.00 0.00 3.59
1705 3952 1.133363 TTGGAAAGAACCCCAGTCGA 58.867 50.000 0.00 0.00 33.43 4.20
1706 3953 1.975660 TTTGGAAAGAACCCCAGTCG 58.024 50.000 0.00 0.00 33.43 4.18
1707 3954 4.152647 AGAATTTGGAAAGAACCCCAGTC 58.847 43.478 0.00 0.00 33.43 3.51
1708 3955 4.199002 AGAATTTGGAAAGAACCCCAGT 57.801 40.909 0.00 0.00 33.43 4.00
1709 3956 4.588528 TCAAGAATTTGGAAAGAACCCCAG 59.411 41.667 0.00 0.00 34.97 4.45
1710 3957 4.551671 TCAAGAATTTGGAAAGAACCCCA 58.448 39.130 0.00 0.00 34.97 4.96
1711 3958 4.588951 ACTCAAGAATTTGGAAAGAACCCC 59.411 41.667 0.00 0.00 34.97 4.95
1712 3959 5.536538 AGACTCAAGAATTTGGAAAGAACCC 59.463 40.000 0.00 0.00 34.97 4.11
1713 3960 6.641169 AGACTCAAGAATTTGGAAAGAACC 57.359 37.500 0.00 0.00 34.97 3.62
1714 3961 7.142021 GGAAGACTCAAGAATTTGGAAAGAAC 58.858 38.462 0.00 0.00 34.97 3.01
1715 3962 6.265422 GGGAAGACTCAAGAATTTGGAAAGAA 59.735 38.462 0.00 0.00 34.97 2.52
1716 3963 5.770162 GGGAAGACTCAAGAATTTGGAAAGA 59.230 40.000 0.00 0.00 34.97 2.52
1717 3964 5.335191 CGGGAAGACTCAAGAATTTGGAAAG 60.335 44.000 0.00 0.00 34.97 2.62
1718 3965 4.518970 CGGGAAGACTCAAGAATTTGGAAA 59.481 41.667 0.00 0.00 34.97 3.13
1719 3966 4.072131 CGGGAAGACTCAAGAATTTGGAA 58.928 43.478 0.00 0.00 34.97 3.53
1720 3967 3.326588 TCGGGAAGACTCAAGAATTTGGA 59.673 43.478 0.00 0.00 34.97 3.53
1721 3968 3.674997 TCGGGAAGACTCAAGAATTTGG 58.325 45.455 0.00 0.00 34.97 3.28
1722 3969 5.886960 ATTCGGGAAGACTCAAGAATTTG 57.113 39.130 0.00 0.00 30.03 2.32
1723 3970 5.122396 CGAATTCGGGAAGACTCAAGAATTT 59.878 40.000 20.16 0.00 38.35 1.82
1724 3971 4.631813 CGAATTCGGGAAGACTCAAGAATT 59.368 41.667 20.16 1.50 39.65 2.17
1725 3972 4.184629 CGAATTCGGGAAGACTCAAGAAT 58.815 43.478 20.16 0.00 33.40 2.40
1726 3973 3.585862 CGAATTCGGGAAGACTCAAGAA 58.414 45.455 20.16 0.00 35.37 2.52
1727 3974 3.232213 CGAATTCGGGAAGACTCAAGA 57.768 47.619 20.16 0.00 35.37 3.02
1746 3993 2.679450 TGTAACGACATCCAAGAACCG 58.321 47.619 0.00 0.00 0.00 4.44
1784 4145 2.647529 TCAAATACGAAGCAGCTCGA 57.352 45.000 17.64 5.50 41.44 4.04
1785 4146 2.033407 CCATCAAATACGAAGCAGCTCG 60.033 50.000 11.32 11.32 44.50 5.03
1786 4147 2.939103 ACCATCAAATACGAAGCAGCTC 59.061 45.455 0.00 0.00 0.00 4.09
1787 4148 2.991250 ACCATCAAATACGAAGCAGCT 58.009 42.857 0.00 0.00 0.00 4.24
2169 4609 7.414436 TGCAGAATACAACAGTTTCAGTAAAC 58.586 34.615 0.00 0.00 44.47 2.01
2170 4610 7.561021 TGCAGAATACAACAGTTTCAGTAAA 57.439 32.000 0.00 0.00 0.00 2.01
2172 4612 6.954944 GTTGCAGAATACAACAGTTTCAGTA 58.045 36.000 1.95 0.00 45.35 2.74
2193 4671 0.601558 AAGCAGATTGGCAGCAGTTG 59.398 50.000 0.00 0.00 35.83 3.16
2194 4672 0.886563 GAAGCAGATTGGCAGCAGTT 59.113 50.000 0.00 0.00 35.83 3.16
2200 4678 2.305635 TCCTAACTGAAGCAGATTGGCA 59.694 45.455 0.82 0.00 31.70 4.92
2203 4681 4.337555 CCCATTCCTAACTGAAGCAGATTG 59.662 45.833 0.82 0.00 35.18 2.67
2209 4687 2.239907 ACTCCCCATTCCTAACTGAAGC 59.760 50.000 0.00 0.00 0.00 3.86
2211 4689 3.655777 ACAACTCCCCATTCCTAACTGAA 59.344 43.478 0.00 0.00 0.00 3.02
2213 4691 3.244911 ACACAACTCCCCATTCCTAACTG 60.245 47.826 0.00 0.00 0.00 3.16
2214 4692 2.986728 ACACAACTCCCCATTCCTAACT 59.013 45.455 0.00 0.00 0.00 2.24
2215 4693 3.081804 CACACAACTCCCCATTCCTAAC 58.918 50.000 0.00 0.00 0.00 2.34
2216 4694 2.041081 CCACACAACTCCCCATTCCTAA 59.959 50.000 0.00 0.00 0.00 2.69
2219 4697 0.404040 TCCACACAACTCCCCATTCC 59.596 55.000 0.00 0.00 0.00 3.01
2221 4699 1.149101 AGTCCACACAACTCCCCATT 58.851 50.000 0.00 0.00 0.00 3.16
2223 4701 0.986019 ACAGTCCACACAACTCCCCA 60.986 55.000 0.00 0.00 0.00 4.96
2225 4703 1.308998 CAACAGTCCACACAACTCCC 58.691 55.000 0.00 0.00 0.00 4.30
2226 4704 2.038387 ACAACAGTCCACACAACTCC 57.962 50.000 0.00 0.00 0.00 3.85
2229 4707 7.149973 TCTAATACTACAACAGTCCACACAAC 58.850 38.462 0.00 0.00 38.80 3.32
2230 4708 7.292713 TCTAATACTACAACAGTCCACACAA 57.707 36.000 0.00 0.00 38.80 3.33
2231 4709 6.904463 TCTAATACTACAACAGTCCACACA 57.096 37.500 0.00 0.00 38.80 3.72
2268 4746 7.605449 CAAATACCATCTGTTTCCATTCAACT 58.395 34.615 0.00 0.00 0.00 3.16
2269 4747 6.311200 GCAAATACCATCTGTTTCCATTCAAC 59.689 38.462 0.00 0.00 0.00 3.18
2340 4818 4.457603 CGACTGTTATGATTTCCCCAAACA 59.542 41.667 0.00 0.00 0.00 2.83
2341 4819 4.142469 CCGACTGTTATGATTTCCCCAAAC 60.142 45.833 0.00 0.00 0.00 2.93
2342 4820 4.013728 CCGACTGTTATGATTTCCCCAAA 58.986 43.478 0.00 0.00 0.00 3.28
2344 4822 2.574369 ACCGACTGTTATGATTTCCCCA 59.426 45.455 0.00 0.00 0.00 4.96
2345 4823 3.118371 AGACCGACTGTTATGATTTCCCC 60.118 47.826 0.00 0.00 0.00 4.81
2346 4824 4.138487 AGACCGACTGTTATGATTTCCC 57.862 45.455 0.00 0.00 0.00 3.97
2347 4825 4.935808 ACAAGACCGACTGTTATGATTTCC 59.064 41.667 0.00 0.00 0.00 3.13
2348 4826 5.671329 GCACAAGACCGACTGTTATGATTTC 60.671 44.000 0.00 0.00 0.00 2.17
2349 4827 4.154195 GCACAAGACCGACTGTTATGATTT 59.846 41.667 0.00 0.00 0.00 2.17
2350 4828 3.684788 GCACAAGACCGACTGTTATGATT 59.315 43.478 0.00 0.00 0.00 2.57
2352 4830 2.036604 TGCACAAGACCGACTGTTATGA 59.963 45.455 0.00 0.00 0.00 2.15
2353 4831 2.412870 TGCACAAGACCGACTGTTATG 58.587 47.619 0.00 0.00 0.00 1.90
2354 4832 2.831685 TGCACAAGACCGACTGTTAT 57.168 45.000 0.00 0.00 0.00 1.89
2357 4835 1.202639 TCATTGCACAAGACCGACTGT 60.203 47.619 0.00 0.00 0.00 3.55
2358 4836 1.511850 TCATTGCACAAGACCGACTG 58.488 50.000 0.00 0.00 0.00 3.51
2359 4837 2.254546 TTCATTGCACAAGACCGACT 57.745 45.000 0.00 0.00 0.00 4.18
2362 4840 2.033299 ACAGTTTCATTGCACAAGACCG 59.967 45.455 0.00 0.00 0.00 4.79
2363 4841 3.316308 AGACAGTTTCATTGCACAAGACC 59.684 43.478 0.00 0.00 0.00 3.85
2364 4842 4.035558 TCAGACAGTTTCATTGCACAAGAC 59.964 41.667 0.00 0.00 0.00 3.01
2365 4843 4.198530 TCAGACAGTTTCATTGCACAAGA 58.801 39.130 0.00 0.00 0.00 3.02
2366 4844 4.556942 TCAGACAGTTTCATTGCACAAG 57.443 40.909 0.00 0.00 0.00 3.16
2367 4845 4.639755 TCTTCAGACAGTTTCATTGCACAA 59.360 37.500 0.00 0.00 0.00 3.33
2368 4846 4.198530 TCTTCAGACAGTTTCATTGCACA 58.801 39.130 0.00 0.00 0.00 4.57
2369 4847 4.818534 TCTTCAGACAGTTTCATTGCAC 57.181 40.909 0.00 0.00 0.00 4.57
2372 4850 6.369059 ACTGTTCTTCAGACAGTTTCATTG 57.631 37.500 4.20 0.00 46.27 2.82
2524 6263 8.312669 AGATTACCTTCTAGCATTTCTACTGT 57.687 34.615 0.00 0.00 0.00 3.55
2530 6269 9.561069 TGGATTTAGATTACCTTCTAGCATTTC 57.439 33.333 0.00 0.00 30.20 2.17
2604 6352 9.431887 GACAGTACTATGAAACCAATAACTTCA 57.568 33.333 0.00 0.00 33.82 3.02
2608 6356 8.665685 CAAGGACAGTACTATGAAACCAATAAC 58.334 37.037 0.00 0.00 0.00 1.89
2687 6473 5.546499 ACTGAGTTGGGTATCTAAGTTCCAA 59.454 40.000 0.00 0.00 35.41 3.53
2689 6475 5.187186 TGACTGAGTTGGGTATCTAAGTTCC 59.813 44.000 0.00 0.00 0.00 3.62
2858 6664 3.616219 ACTGTAGGACTGTGCACAAAAA 58.384 40.909 21.98 1.94 0.00 1.94
2859 6665 3.275617 ACTGTAGGACTGTGCACAAAA 57.724 42.857 21.98 0.00 0.00 2.44
2862 6668 4.039852 TGAATAACTGTAGGACTGTGCACA 59.960 41.667 20.37 20.37 30.49 4.57
2863 6669 4.566004 TGAATAACTGTAGGACTGTGCAC 58.434 43.478 10.75 10.75 30.49 4.57
2864 6670 4.882842 TGAATAACTGTAGGACTGTGCA 57.117 40.909 1.24 0.00 30.49 4.57
2865 6671 5.874810 TCAATGAATAACTGTAGGACTGTGC 59.125 40.000 0.00 0.00 30.49 4.57
2866 6672 8.498054 AATCAATGAATAACTGTAGGACTGTG 57.502 34.615 0.00 0.00 30.49 3.66
2868 6674 8.824781 CAGAATCAATGAATAACTGTAGGACTG 58.175 37.037 0.00 0.00 0.00 3.51
2869 6675 7.497249 GCAGAATCAATGAATAACTGTAGGACT 59.503 37.037 0.00 0.00 0.00 3.85
2873 6679 9.844790 TTTTGCAGAATCAATGAATAACTGTAG 57.155 29.630 0.00 0.00 0.00 2.74
2875 6681 8.143193 TGTTTTGCAGAATCAATGAATAACTGT 58.857 29.630 0.00 0.00 0.00 3.55
2937 6766 3.374764 AGGCATCATGTCACAGGTAGTA 58.625 45.455 0.00 0.00 0.00 1.82
2980 6809 1.220749 GGTCTGCGTGGGCTGAATA 59.779 57.895 0.00 0.00 46.72 1.75
3016 6847 2.360801 GGTCAGGAGTCTACTCTGCATC 59.639 54.545 9.84 0.00 42.48 3.91
3157 7012 7.391554 CCTGTCTGGAGAATGAATCAAGTTTAA 59.608 37.037 0.00 0.00 38.35 1.52
3306 7183 4.351111 AGGTTCCCAAGTTGACATCTTAGT 59.649 41.667 3.87 0.00 0.00 2.24
3351 7261 6.073331 CGGTTCAAATGCATTACAAACCAATT 60.073 34.615 30.23 8.55 0.00 2.32
3415 7486 2.117941 AACTTGAAACGGCAGCGCTC 62.118 55.000 7.13 2.01 0.00 5.03
3537 7719 1.967319 TTGTCTTCCACCACAAGCTC 58.033 50.000 0.00 0.00 0.00 4.09
3580 7762 7.072030 CAGTTACAGAATACAACAGTTTCAGC 58.928 38.462 0.00 0.00 0.00 4.26
3874 8193 7.231722 TCTGAGTTCGAAATGGGGAAATTTAAA 59.768 33.333 1.32 0.00 29.89 1.52
3891 8238 2.802816 CTGAGTTGGGTTTCTGAGTTCG 59.197 50.000 0.00 0.00 0.00 3.95
4017 8373 9.921637 GGAAAACAACCTGAATTTTGTATCATA 57.078 29.630 0.00 0.00 34.82 2.15
4025 8381 5.692115 ACCTGGAAAACAACCTGAATTTT 57.308 34.783 0.00 0.00 0.00 1.82
4107 8474 7.228906 ACATGCAATCTTTGGAGAAGATCTATG 59.771 37.037 0.00 8.92 36.07 2.23
4206 8577 6.761099 TTCTCTTATCTTTCTCTACGCTGT 57.239 37.500 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.