Multiple sequence alignment - TraesCS7B01G012000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G012000 chr7B 100.000 3648 0 0 514 4161 7718161 7714514 0.000000e+00 6737.0
1 TraesCS7B01G012000 chr7B 95.479 2079 34 18 827 2867 10558771 10560827 0.000000e+00 3264.0
2 TraesCS7B01G012000 chr7B 100.000 394 0 0 1 394 7718674 7718281 0.000000e+00 728.0
3 TraesCS7B01G012000 chr7B 99.492 394 2 0 1 394 10557968 10558361 0.000000e+00 717.0
4 TraesCS7B01G012000 chr7B 75.157 1115 182 52 1055 2142 10946528 10947574 1.780000e-118 436.0
5 TraesCS7B01G012000 chr7B 94.359 195 7 4 529 723 10558582 10558772 3.150000e-76 296.0
6 TraesCS7B01G012000 chr7B 88.618 246 15 1 2719 2951 7730560 7730315 1.890000e-73 287.0
7 TraesCS7B01G012000 chr7B 92.568 148 9 2 3103 3249 10560991 10561137 1.170000e-50 211.0
8 TraesCS7B01G012000 chr7B 76.018 442 79 18 1053 1489 15935374 15935793 1.960000e-48 204.0
9 TraesCS7B01G012000 chr7B 80.753 239 38 3 1539 1770 10061409 10061646 3.300000e-41 180.0
10 TraesCS7B01G012000 chr7B 93.636 110 7 0 926 1035 10916482 10916591 9.250000e-37 165.0
11 TraesCS7B01G012000 chr7A 89.701 1505 78 24 828 2295 70890136 70888672 0.000000e+00 1849.0
12 TraesCS7B01G012000 chr7A 94.534 622 24 3 1089 1700 74642584 74643205 0.000000e+00 952.0
13 TraesCS7B01G012000 chr7A 87.231 603 38 11 1727 2295 74643203 74643800 0.000000e+00 651.0
14 TraesCS7B01G012000 chr7A 88.514 444 31 4 2599 3023 74644037 74644479 1.710000e-143 520.0
15 TraesCS7B01G012000 chr7A 79.197 697 102 18 1084 1770 70898529 70897866 1.060000e-120 444.0
16 TraesCS7B01G012000 chr7A 74.719 1246 190 71 926 2142 74883351 74884500 1.370000e-119 440.0
17 TraesCS7B01G012000 chr7A 79.160 595 82 20 1085 1676 71114685 71114130 1.410000e-99 374.0
18 TraesCS7B01G012000 chr7A 95.045 222 6 3 827 1043 74642367 74642588 1.110000e-90 344.0
19 TraesCS7B01G012000 chr7A 85.124 363 19 11 2890 3251 70888163 70887835 5.150000e-89 339.0
20 TraesCS7B01G012000 chr7A 90.000 270 13 2 2599 2855 70888429 70888161 1.850000e-88 337.0
21 TraesCS7B01G012000 chr7A 86.166 253 14 5 2719 2951 71112899 71112648 1.920000e-63 254.0
22 TraesCS7B01G012000 chr7A 75.820 579 86 30 926 1489 634363352 634362813 1.160000e-60 244.0
23 TraesCS7B01G012000 chr7A 76.982 391 56 23 941 1331 70268006 70267650 4.250000e-45 193.0
24 TraesCS7B01G012000 chr7A 90.476 147 12 2 3103 3249 74644492 74644636 4.250000e-45 193.0
25 TraesCS7B01G012000 chr7A 94.444 126 6 1 722 847 269960426 269960302 4.250000e-45 193.0
26 TraesCS7B01G012000 chr7A 95.041 121 5 1 716 836 649922548 649922429 5.490000e-44 189.0
27 TraesCS7B01G012000 chr7A 96.522 115 3 1 718 832 670536305 670536418 5.490000e-44 189.0
28 TraesCS7B01G012000 chr7A 90.435 115 7 3 525 638 70890364 70890253 9.320000e-32 148.0
29 TraesCS7B01G012000 chr7A 74.123 456 73 24 3298 3734 634923718 634924147 3.350000e-31 147.0
30 TraesCS7B01G012000 chr7A 91.765 85 7 0 2520 2604 74643925 74644009 7.310000e-23 119.0
31 TraesCS7B01G012000 chr7A 94.667 75 3 1 2531 2604 70888531 70888457 9.450000e-22 115.0
32 TraesCS7B01G012000 chr7A 78.125 192 27 7 1576 1760 70215316 70215133 1.580000e-19 108.0
33 TraesCS7B01G012000 chr7A 88.095 84 8 1 514 597 74641658 74641739 9.520000e-17 99.0
34 TraesCS7B01G012000 chr7A 97.778 45 1 0 959 1003 74732213 74732257 1.240000e-10 78.7
35 TraesCS7B01G012000 chr7A 79.747 79 15 1 2517 2594 123935064 123934986 5.810000e-04 56.5
36 TraesCS7B01G012000 chr7D 91.170 1291 47 11 1056 2295 66416504 66415230 0.000000e+00 1690.0
37 TraesCS7B01G012000 chr7D 95.448 659 24 1 1059 1711 68983535 68984193 0.000000e+00 1046.0
38 TraesCS7B01G012000 chr7D 89.048 557 22 12 1756 2280 68984191 68984740 0.000000e+00 654.0
39 TraesCS7B01G012000 chr7D 87.260 573 40 18 2683 3249 68984946 68985491 1.270000e-174 623.0
40 TraesCS7B01G012000 chr7D 76.737 1238 157 65 1084 2295 66508477 66507345 1.680000e-158 569.0
41 TraesCS7B01G012000 chr7D 86.592 537 30 13 2673 3187 66413278 66412762 4.700000e-154 555.0
42 TraesCS7B01G012000 chr7D 77.135 1054 144 51 1101 2142 68928627 68929595 4.770000e-144 521.0
43 TraesCS7B01G012000 chr7D 84.341 364 26 20 62 394 66440825 66440462 1.120000e-85 327.0
44 TraesCS7B01G012000 chr7D 89.778 225 11 1 827 1039 68983319 68983543 1.140000e-70 278.0
45 TraesCS7B01G012000 chr7D 81.846 325 50 4 1821 2142 69056086 69056404 8.870000e-67 265.0
46 TraesCS7B01G012000 chr7D 75.868 605 89 35 3298 3874 40419082 40419657 5.340000e-64 255.0
47 TraesCS7B01G012000 chr7D 95.172 145 7 0 2772 2916 68930382 68930526 3.240000e-56 230.0
48 TraesCS7B01G012000 chr7D 86.842 190 15 7 514 699 66440400 66440217 1.960000e-48 204.0
49 TraesCS7B01G012000 chr7D 86.857 175 10 1 2719 2880 66506860 66506686 2.550000e-42 183.0
50 TraesCS7B01G012000 chr7D 89.041 146 1 1 2293 2438 68984785 68984915 2.570000e-37 167.0
51 TraesCS7B01G012000 chr7D 92.857 98 3 1 926 1019 66416600 66416503 5.610000e-29 139.0
52 TraesCS7B01G012000 chr7D 83.448 145 17 5 2298 2441 66415168 66415030 1.210000e-25 128.0
53 TraesCS7B01G012000 chr7D 91.667 84 6 1 2599 2682 66414704 66414622 9.450000e-22 115.0
54 TraesCS7B01G012000 chr7D 87.629 97 6 5 2201 2295 66415031 66414939 1.580000e-19 108.0
55 TraesCS7B01G012000 chr7D 77.576 165 25 6 1543 1704 66516728 66516573 5.730000e-14 89.8
56 TraesCS7B01G012000 chr7D 77.576 165 25 6 1543 1704 68802052 68802207 5.730000e-14 89.8
57 TraesCS7B01G012000 chr7D 84.211 95 10 2 827 916 66416731 66416637 2.060000e-13 87.9
58 TraesCS7B01G012000 chr7D 97.436 39 1 0 2617 2655 68984914 68984952 2.680000e-07 67.6
59 TraesCS7B01G012000 chr2B 78.244 763 109 29 935 1676 135794780 135795506 1.780000e-118 436.0
60 TraesCS7B01G012000 chr2B 80.332 361 51 13 1791 2142 135795628 135795977 5.340000e-64 255.0
61 TraesCS7B01G012000 chr2B 78.378 148 26 4 1484 1628 55855442 55855298 1.590000e-14 91.6
62 TraesCS7B01G012000 chr2A 78.059 752 111 28 935 1676 84748950 84749657 3.840000e-115 425.0
63 TraesCS7B01G012000 chr2A 74.632 272 44 16 3431 3697 732545039 732544788 3.420000e-16 97.1
64 TraesCS7B01G012000 chr2A 87.500 80 8 2 3299 3376 761182175 761182254 1.590000e-14 91.6
65 TraesCS7B01G012000 chr2A 82.857 70 11 1 2517 2585 84750383 84750452 1.250000e-05 62.1
66 TraesCS7B01G012000 chr6D 81.629 528 74 18 3304 3821 397626296 397625782 2.310000e-112 416.0
67 TraesCS7B01G012000 chr6D 75.166 753 120 48 3298 4033 473300295 473299593 4.070000e-75 292.0
68 TraesCS7B01G012000 chr6D 79.747 79 15 1 2517 2594 56139802 56139724 5.810000e-04 56.5
69 TraesCS7B01G012000 chr1A 78.000 650 97 35 3297 3913 572506818 572507454 2.360000e-97 366.0
70 TraesCS7B01G012000 chr1A 97.143 35 1 0 2779 2813 589873302 589873336 4.490000e-05 60.2
71 TraesCS7B01G012000 chr3A 98.182 110 2 0 720 829 684705855 684705746 4.250000e-45 193.0
72 TraesCS7B01G012000 chrUn 97.321 112 3 0 718 829 352766987 352766876 1.530000e-44 191.0
73 TraesCS7B01G012000 chr5A 98.165 109 2 0 720 828 495320841 495320949 1.530000e-44 191.0
74 TraesCS7B01G012000 chr5A 93.750 128 7 1 713 839 622370026 622370153 1.530000e-44 191.0
75 TraesCS7B01G012000 chr5A 95.690 116 5 0 722 837 672031081 672030966 1.980000e-43 187.0
76 TraesCS7B01G012000 chr5A 80.460 87 16 1 3290 3376 452280338 452280423 9.660000e-07 65.8
77 TraesCS7B01G012000 chr5A 81.429 70 12 1 2517 2585 168982196 168982265 5.810000e-04 56.5
78 TraesCS7B01G012000 chr4A 92.188 128 8 1 703 828 594217848 594217975 3.300000e-41 180.0
79 TraesCS7B01G012000 chr2D 76.011 371 72 10 1056 1425 33581080 33580726 4.280000e-40 176.0
80 TraesCS7B01G012000 chr2D 71.966 585 108 26 1066 1628 33374157 33373607 2.030000e-23 121.0
81 TraesCS7B01G012000 chr3D 82.857 70 11 1 2517 2585 497741365 497741434 1.250000e-05 62.1
82 TraesCS7B01G012000 chr4B 81.690 71 10 3 2517 2585 630330217 630330286 5.810000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G012000 chr7B 7714514 7718674 4160 True 3732.500000 6737 100.000000 1 4161 2 chr7B.!!$R2 4160
1 TraesCS7B01G012000 chr7B 10557968 10561137 3169 False 1122.000000 3264 95.474500 1 3249 4 chr7B.!!$F5 3248
2 TraesCS7B01G012000 chr7B 10946528 10947574 1046 False 436.000000 436 75.157000 1055 2142 1 chr7B.!!$F3 1087
3 TraesCS7B01G012000 chr7A 70887835 70890364 2529 True 557.600000 1849 89.985400 525 3251 5 chr7A.!!$R8 2726
4 TraesCS7B01G012000 chr7A 70897866 70898529 663 True 444.000000 444 79.197000 1084 1770 1 chr7A.!!$R3 686
5 TraesCS7B01G012000 chr7A 74883351 74884500 1149 False 440.000000 440 74.719000 926 2142 1 chr7A.!!$F2 1216
6 TraesCS7B01G012000 chr7A 74641658 74644636 2978 False 411.142857 952 90.808571 514 3249 7 chr7A.!!$F5 2735
7 TraesCS7B01G012000 chr7A 71112648 71114685 2037 True 314.000000 374 82.663000 1085 2951 2 chr7A.!!$R9 1866
8 TraesCS7B01G012000 chr7A 634362813 634363352 539 True 244.000000 244 75.820000 926 1489 1 chr7A.!!$R6 563
9 TraesCS7B01G012000 chr7D 68983319 68985491 2172 False 472.600000 1046 91.335167 827 3249 6 chr7D.!!$F5 2422
10 TraesCS7B01G012000 chr7D 66412762 66416731 3969 True 403.271429 1690 88.224857 827 3187 7 chr7D.!!$R2 2360
11 TraesCS7B01G012000 chr7D 66506686 66508477 1791 True 376.000000 569 81.797000 1084 2880 2 chr7D.!!$R4 1796
12 TraesCS7B01G012000 chr7D 68928627 68930526 1899 False 375.500000 521 86.153500 1101 2916 2 chr7D.!!$F4 1815
13 TraesCS7B01G012000 chr7D 66440217 66440825 608 True 265.500000 327 85.591500 62 699 2 chr7D.!!$R3 637
14 TraesCS7B01G012000 chr7D 40419082 40419657 575 False 255.000000 255 75.868000 3298 3874 1 chr7D.!!$F1 576
15 TraesCS7B01G012000 chr2B 135794780 135795977 1197 False 345.500000 436 79.288000 935 2142 2 chr2B.!!$F1 1207
16 TraesCS7B01G012000 chr2A 84748950 84750452 1502 False 243.550000 425 80.458000 935 2585 2 chr2A.!!$F2 1650
17 TraesCS7B01G012000 chr6D 397625782 397626296 514 True 416.000000 416 81.629000 3304 3821 1 chr6D.!!$R2 517
18 TraesCS7B01G012000 chr6D 473299593 473300295 702 True 292.000000 292 75.166000 3298 4033 1 chr6D.!!$R3 735
19 TraesCS7B01G012000 chr1A 572506818 572507454 636 False 366.000000 366 78.000000 3297 3913 1 chr1A.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 1431 0.325602 TAACTTACACGGCCCAAGGG 59.674 55.0 0.0 0.0 38.57 3.95 F
885 1437 1.279025 ACACGGCCCAAGGGACATAT 61.279 55.0 12.4 0.0 45.70 1.78 F
2822 5625 0.179094 AGTGTCGCCGTCTCAAAACA 60.179 50.0 0.0 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 2644 2.124736 CAACACGGGGCCGATGAT 60.125 61.111 12.2 0.0 42.83 2.45 R
2883 5687 1.056660 TGTCAGGAGAAGGGACCAAC 58.943 55.000 0.0 0.0 0.00 3.77 R
4052 6986 0.037605 AAAGTTCGGACGGCTAGGTG 60.038 55.000 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 8.517878 ACAAACATTCTTAGAGGACATGATTTG 58.482 33.333 0.00 12.50 0.00 2.32
100 101 8.359642 CACTTAATTTCTTCCTTGACATTTCCA 58.640 33.333 0.00 0.00 0.00 3.53
582 700 4.460731 AGGAGAGCTTTGTTTTATTGAGCC 59.539 41.667 0.00 0.00 33.96 4.70
730 886 6.887626 TTTTTACACAAACATACTCCCTCC 57.112 37.500 0.00 0.00 0.00 4.30
731 887 2.762535 ACACAAACATACTCCCTCCG 57.237 50.000 0.00 0.00 0.00 4.63
732 888 1.975680 ACACAAACATACTCCCTCCGT 59.024 47.619 0.00 0.00 0.00 4.69
733 889 2.370849 ACACAAACATACTCCCTCCGTT 59.629 45.455 0.00 0.00 0.00 4.44
734 890 3.000727 CACAAACATACTCCCTCCGTTC 58.999 50.000 0.00 0.00 0.00 3.95
735 891 2.027469 ACAAACATACTCCCTCCGTTCC 60.027 50.000 0.00 0.00 0.00 3.62
736 892 1.946984 AACATACTCCCTCCGTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
737 893 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
740 896 3.265995 ACATACTCCCTCCGTTCCAAATT 59.734 43.478 0.00 0.00 0.00 1.82
743 899 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
744 900 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
745 901 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
746 902 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
748 904 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
749 905 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
750 906 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
751 907 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
752 908 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
753 909 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
754 910 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
756 912 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
757 913 4.092821 CCAAATTACTCGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
758 914 5.390461 CCAAATTACTCGTCGCAGAAATGAA 60.390 40.000 0.00 0.00 39.69 2.57
761 917 2.688507 ACTCGTCGCAGAAATGAATGT 58.311 42.857 0.00 0.00 39.69 2.71
767 923 5.915196 TCGTCGCAGAAATGAATGTATCTAG 59.085 40.000 0.00 0.00 39.69 2.43
771 927 7.436673 GTCGCAGAAATGAATGTATCTAGAACT 59.563 37.037 0.00 0.00 39.69 3.01
772 928 8.630037 TCGCAGAAATGAATGTATCTAGAACTA 58.370 33.333 0.00 0.00 0.00 2.24
773 929 9.249457 CGCAGAAATGAATGTATCTAGAACTAA 57.751 33.333 0.00 0.00 0.00 2.24
801 957 6.625362 ACATCTAGATACATTCATACCTGCG 58.375 40.000 4.54 0.00 0.00 5.18
802 958 6.434340 ACATCTAGATACATTCATACCTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
803 959 6.255596 TCTAGATACATTCATACCTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
804 960 4.937201 AGATACATTCATACCTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
806 962 5.670485 AGATACATTCATACCTGCGACAAA 58.330 37.500 0.00 0.00 0.00 2.83
807 963 6.291377 AGATACATTCATACCTGCGACAAAT 58.709 36.000 0.00 0.00 0.00 2.32
808 964 7.441836 AGATACATTCATACCTGCGACAAATA 58.558 34.615 0.00 0.00 0.00 1.40
811 967 7.333528 ACATTCATACCTGCGACAAATAATT 57.666 32.000 0.00 0.00 0.00 1.40
812 968 7.417612 ACATTCATACCTGCGACAAATAATTC 58.582 34.615 0.00 0.00 0.00 2.17
813 969 5.651172 TCATACCTGCGACAAATAATTCG 57.349 39.130 0.00 0.00 38.31 3.34
814 970 4.509970 TCATACCTGCGACAAATAATTCGG 59.490 41.667 0.00 0.00 35.73 4.30
815 971 2.980568 ACCTGCGACAAATAATTCGGA 58.019 42.857 0.00 0.00 35.73 4.55
816 972 3.340034 ACCTGCGACAAATAATTCGGAA 58.660 40.909 0.00 0.00 35.02 4.30
856 1408 0.682292 TGTGGACATTAGACGTGCCA 59.318 50.000 0.00 0.00 0.00 4.92
868 1420 4.530710 AGACGTGCCAATCTAACTTACA 57.469 40.909 0.00 0.00 0.00 2.41
879 1431 0.325602 TAACTTACACGGCCCAAGGG 59.674 55.000 0.00 0.00 38.57 3.95
885 1437 1.279025 ACACGGCCCAAGGGACATAT 61.279 55.000 12.40 0.00 45.70 1.78
1003 1595 2.759973 ATCTTCTCCGCCTCGCCA 60.760 61.111 0.00 0.00 0.00 5.69
1134 1781 3.112205 GCATCTCCAGGACGGCCAT 62.112 63.158 11.69 0.00 36.29 4.40
1218 1865 1.913762 CTCCCTCCAACACCTCCGT 60.914 63.158 0.00 0.00 0.00 4.69
1570 2258 1.493311 GCCTTCGACAACTTCAGCG 59.507 57.895 0.00 0.00 0.00 5.18
2527 3594 7.841956 TGGAACTTGAAAAACCAAATCAGTTA 58.158 30.769 0.00 0.00 0.00 2.24
2822 5625 0.179094 AGTGTCGCCGTCTCAAAACA 60.179 50.000 0.00 0.00 0.00 2.83
2883 5687 5.673337 TGTTGTGTTTCTGCTAGCTAAAG 57.327 39.130 17.23 5.16 0.00 1.85
2909 5713 3.515901 GTCCCTTCTCCTGACAATGTAGT 59.484 47.826 0.00 0.00 0.00 2.73
2927 5731 6.715344 TGTAGTAAACCTATTTGCTGTTCG 57.285 37.500 1.25 0.00 40.52 3.95
2987 5791 2.348666 GCATTAGTCTGTAGTGGTTGCG 59.651 50.000 0.00 0.00 0.00 4.85
2998 5802 1.003118 AGTGGTTGCGCTCTTATTCCA 59.997 47.619 9.73 3.90 0.00 3.53
2999 5803 1.810151 GTGGTTGCGCTCTTATTCCAA 59.190 47.619 9.73 0.00 0.00 3.53
3023 5827 5.001874 CCACTTAAAGTTTCAGTCCTACCC 58.998 45.833 0.00 0.00 0.00 3.69
3024 5828 5.221864 CCACTTAAAGTTTCAGTCCTACCCT 60.222 44.000 0.00 0.00 0.00 4.34
3025 5829 6.296803 CACTTAAAGTTTCAGTCCTACCCTT 58.703 40.000 0.00 0.00 0.00 3.95
3026 5830 7.447594 CACTTAAAGTTTCAGTCCTACCCTTA 58.552 38.462 0.00 0.00 0.00 2.69
3027 5831 7.603024 CACTTAAAGTTTCAGTCCTACCCTTAG 59.397 40.741 0.00 0.00 0.00 2.18
3028 5832 7.291885 ACTTAAAGTTTCAGTCCTACCCTTAGT 59.708 37.037 0.00 0.00 0.00 2.24
3029 5833 5.741962 AAGTTTCAGTCCTACCCTTAGTC 57.258 43.478 0.00 0.00 0.00 2.59
3080 5893 7.764443 CCTTGCATTTCTCTTTGATGAATCATT 59.236 33.333 0.00 0.00 36.56 2.57
3081 5894 9.797556 CTTGCATTTCTCTTTGATGAATCATTA 57.202 29.630 0.00 0.00 36.56 1.90
3084 5897 9.245962 GCATTTCTCTTTGATGAATCATTAAGG 57.754 33.333 14.68 10.12 36.56 2.69
3093 5906 8.706492 TTGATGAATCATTAAGGATTTGTTGC 57.294 30.769 15.88 4.52 37.61 4.17
3094 5907 7.267128 TGATGAATCATTAAGGATTTGTTGCC 58.733 34.615 15.88 3.87 37.61 4.52
3095 5908 5.976458 TGAATCATTAAGGATTTGTTGCCC 58.024 37.500 15.88 3.23 37.61 5.36
3096 5909 5.483231 TGAATCATTAAGGATTTGTTGCCCA 59.517 36.000 15.88 5.61 37.61 5.36
3097 5910 5.603170 ATCATTAAGGATTTGTTGCCCAG 57.397 39.130 0.00 0.00 0.00 4.45
3098 5911 4.671831 TCATTAAGGATTTGTTGCCCAGA 58.328 39.130 0.00 0.00 0.00 3.86
3099 5912 5.083122 TCATTAAGGATTTGTTGCCCAGAA 58.917 37.500 0.00 0.00 0.00 3.02
3100 5913 5.185635 TCATTAAGGATTTGTTGCCCAGAAG 59.814 40.000 0.00 0.00 0.00 2.85
3101 5914 2.683211 AGGATTTGTTGCCCAGAAGT 57.317 45.000 0.00 0.00 0.00 3.01
3188 6009 1.228154 AGTTCAACCAAGGACGGCC 60.228 57.895 0.00 0.00 0.00 6.13
3212 6033 3.091545 CCCTGTCTTGGTTATGTGCAAT 58.908 45.455 0.00 0.00 0.00 3.56
3243 6064 2.914059 GCCAAAGCCCGAGAATAGTTA 58.086 47.619 0.00 0.00 0.00 2.24
3251 6072 8.889717 CAAAGCCCGAGAATAGTTATTTTTAGA 58.110 33.333 0.00 0.00 0.00 2.10
3252 6073 8.664211 AAGCCCGAGAATAGTTATTTTTAGAG 57.336 34.615 0.00 0.00 0.00 2.43
3253 6074 7.793036 AGCCCGAGAATAGTTATTTTTAGAGT 58.207 34.615 0.00 0.00 0.00 3.24
3254 6075 8.921205 AGCCCGAGAATAGTTATTTTTAGAGTA 58.079 33.333 0.00 0.00 0.00 2.59
3255 6076 8.976471 GCCCGAGAATAGTTATTTTTAGAGTAC 58.024 37.037 0.00 0.00 0.00 2.73
3280 6101 9.430623 ACAAGTTTGTATTTTTGTTTAGCAACT 57.569 25.926 0.00 0.00 40.16 3.16
3283 6104 9.869757 AGTTTGTATTTTTGTTTAGCAACTTCT 57.130 25.926 0.00 0.00 36.72 2.85
3284 6105 9.900264 GTTTGTATTTTTGTTTAGCAACTTCTG 57.100 29.630 0.00 0.00 36.72 3.02
3285 6106 9.862371 TTTGTATTTTTGTTTAGCAACTTCTGA 57.138 25.926 0.00 0.00 36.72 3.27
3286 6107 9.862371 TTGTATTTTTGTTTAGCAACTTCTGAA 57.138 25.926 0.00 0.00 36.72 3.02
3291 6112 9.730420 TTTTTGTTTAGCAACTTCTGAATAGTC 57.270 29.630 0.00 0.00 36.72 2.59
3292 6113 7.435068 TTGTTTAGCAACTTCTGAATAGTCC 57.565 36.000 0.00 0.00 33.58 3.85
3293 6114 5.637810 TGTTTAGCAACTTCTGAATAGTCCG 59.362 40.000 0.00 0.00 33.58 4.79
3294 6115 3.963428 AGCAACTTCTGAATAGTCCGT 57.037 42.857 0.00 0.00 0.00 4.69
3295 6116 6.519679 TTAGCAACTTCTGAATAGTCCGTA 57.480 37.500 0.00 0.00 0.00 4.02
3296 6117 5.401531 AGCAACTTCTGAATAGTCCGTAA 57.598 39.130 0.00 0.00 0.00 3.18
3297 6118 5.411781 AGCAACTTCTGAATAGTCCGTAAG 58.588 41.667 0.00 0.00 0.00 2.34
3322 6143 2.438254 CATTGGGCGCTGTAGGCA 60.438 61.111 7.64 0.00 41.91 4.75
3383 6205 2.222027 CACGGCCCATTAAGAAGATCC 58.778 52.381 0.00 0.00 0.00 3.36
3390 6212 3.724209 CCCATTAAGAAGATCCCTCCCTT 59.276 47.826 0.00 0.00 0.00 3.95
3446 6269 0.814010 ACACTCGCCTCGCTGTTTTT 60.814 50.000 0.00 0.00 0.00 1.94
3482 6306 1.000938 GTGCTGCTGGTTCAGGAAAAG 60.001 52.381 0.00 0.00 36.19 2.27
3487 6311 1.202940 GCTGGTTCAGGAAAAGGACCT 60.203 52.381 0.00 0.00 38.40 3.85
3506 6330 1.957877 CTGCCTCCGGGTTTTTACAAA 59.042 47.619 0.00 0.00 34.45 2.83
3525 6349 9.619316 TTTACAAATTTGAATATGTTCGTGAGG 57.381 29.630 24.64 0.00 37.15 3.86
3531 6355 8.970691 ATTTGAATATGTTCGTGAGGAAAAAG 57.029 30.769 0.00 0.00 36.14 2.27
3621 6461 8.020819 TCATCGGATTTGTAAAAAGTTCATCAC 58.979 33.333 0.00 0.00 0.00 3.06
3625 6465 8.427012 CGGATTTGTAAAAAGTTCATCACATTG 58.573 33.333 0.00 0.00 0.00 2.82
3626 6466 9.474920 GGATTTGTAAAAAGTTCATCACATTGA 57.525 29.630 0.00 0.00 0.00 2.57
3684 6527 8.306038 TCGAATCAAAATGAGTTCATTGGATTT 58.694 29.630 22.41 13.79 45.06 2.17
3946 6879 1.702182 TGCAGAAAACATTGAGGGCA 58.298 45.000 0.00 0.00 0.00 5.36
3949 6882 3.071312 TGCAGAAAACATTGAGGGCATTT 59.929 39.130 0.00 0.00 0.00 2.32
3950 6883 3.434299 GCAGAAAACATTGAGGGCATTTG 59.566 43.478 0.00 0.00 0.00 2.32
3965 6898 7.042797 AGGGCATTTGCTGTATGTATAAAAG 57.957 36.000 2.12 0.00 41.70 2.27
3968 6901 6.040391 GGCATTTGCTGTATGTATAAAAGGGA 59.960 38.462 2.12 0.00 41.70 4.20
3975 6908 6.486993 GCTGTATGTATAAAAGGGAGGAAAGG 59.513 42.308 0.00 0.00 0.00 3.11
3976 6909 7.637301 GCTGTATGTATAAAAGGGAGGAAAGGA 60.637 40.741 0.00 0.00 0.00 3.36
3977 6910 7.802117 TGTATGTATAAAAGGGAGGAAAGGAG 58.198 38.462 0.00 0.00 0.00 3.69
3978 6911 5.710409 TGTATAAAAGGGAGGAAAGGAGG 57.290 43.478 0.00 0.00 0.00 4.30
3986 6919 3.267031 AGGGAGGAAAGGAGGTTTGTATG 59.733 47.826 0.00 0.00 0.00 2.39
3994 6927 3.614092 AGGAGGTTTGTATGCATGAGTG 58.386 45.455 10.16 0.00 0.00 3.51
3995 6928 2.684881 GGAGGTTTGTATGCATGAGTGG 59.315 50.000 10.16 0.00 0.00 4.00
3996 6929 2.094675 AGGTTTGTATGCATGAGTGGC 58.905 47.619 10.16 0.00 0.00 5.01
3997 6930 1.818060 GGTTTGTATGCATGAGTGGCA 59.182 47.619 10.16 0.00 46.66 4.92
4000 6934 0.036483 TGTATGCATGAGTGGCACGT 60.036 50.000 12.71 0.11 45.23 4.49
4004 6938 2.562912 CATGAGTGGCACGTTGGC 59.437 61.111 12.71 1.49 44.03 4.52
4022 6956 1.338769 GGCGTCATGGTAAGTGGAGTT 60.339 52.381 0.00 0.00 0.00 3.01
4023 6957 2.093869 GGCGTCATGGTAAGTGGAGTTA 60.094 50.000 0.00 0.00 0.00 2.24
4033 6967 5.482526 TGGTAAGTGGAGTTAGCTATCAACA 59.517 40.000 4.97 0.80 32.63 3.33
4034 6968 6.043411 GGTAAGTGGAGTTAGCTATCAACAG 58.957 44.000 4.97 0.00 0.00 3.16
4035 6969 6.127423 GGTAAGTGGAGTTAGCTATCAACAGA 60.127 42.308 4.97 0.00 0.00 3.41
4036 6970 6.360370 AAGTGGAGTTAGCTATCAACAGAA 57.640 37.500 4.97 0.00 0.00 3.02
4037 6971 6.360370 AGTGGAGTTAGCTATCAACAGAAA 57.640 37.500 4.97 0.00 0.00 2.52
4038 6972 6.402222 AGTGGAGTTAGCTATCAACAGAAAG 58.598 40.000 4.97 0.00 0.00 2.62
4039 6973 6.211584 AGTGGAGTTAGCTATCAACAGAAAGA 59.788 38.462 4.97 0.00 0.00 2.52
4040 6974 7.044798 GTGGAGTTAGCTATCAACAGAAAGAT 58.955 38.462 4.67 0.00 0.00 2.40
4041 6975 7.223777 GTGGAGTTAGCTATCAACAGAAAGATC 59.776 40.741 4.67 0.00 0.00 2.75
4042 6976 7.093333 TGGAGTTAGCTATCAACAGAAAGATCA 60.093 37.037 4.67 0.00 0.00 2.92
4043 6977 7.223777 GGAGTTAGCTATCAACAGAAAGATCAC 59.776 40.741 4.67 0.00 0.00 3.06
4044 6978 7.044798 AGTTAGCTATCAACAGAAAGATCACC 58.955 38.462 4.67 0.00 0.00 4.02
4045 6979 4.437239 AGCTATCAACAGAAAGATCACCG 58.563 43.478 0.00 0.00 0.00 4.94
4046 6980 4.160439 AGCTATCAACAGAAAGATCACCGA 59.840 41.667 0.00 0.00 0.00 4.69
4047 6981 5.053145 GCTATCAACAGAAAGATCACCGAT 58.947 41.667 0.00 0.00 0.00 4.18
4048 6982 5.525378 GCTATCAACAGAAAGATCACCGATT 59.475 40.000 0.00 0.00 0.00 3.34
4049 6983 6.292596 GCTATCAACAGAAAGATCACCGATTC 60.293 42.308 0.00 0.00 0.00 2.52
4050 6984 3.926527 TCAACAGAAAGATCACCGATTCG 59.073 43.478 0.00 0.00 0.00 3.34
4051 6985 3.868757 ACAGAAAGATCACCGATTCGA 57.131 42.857 7.83 0.00 0.00 3.71
4052 6986 3.512680 ACAGAAAGATCACCGATTCGAC 58.487 45.455 7.83 0.00 0.00 4.20
4053 6987 3.056821 ACAGAAAGATCACCGATTCGACA 60.057 43.478 7.83 0.00 0.00 4.35
4054 6988 3.304559 CAGAAAGATCACCGATTCGACAC 59.695 47.826 7.83 0.00 0.00 3.67
4055 6989 2.295253 AAGATCACCGATTCGACACC 57.705 50.000 7.83 0.00 0.00 4.16
4056 6990 1.475403 AGATCACCGATTCGACACCT 58.525 50.000 7.83 0.00 0.00 4.00
4057 6991 2.651455 AGATCACCGATTCGACACCTA 58.349 47.619 7.83 0.00 0.00 3.08
4058 6992 2.619177 AGATCACCGATTCGACACCTAG 59.381 50.000 7.83 0.00 0.00 3.02
4059 6993 0.454600 TCACCGATTCGACACCTAGC 59.545 55.000 7.83 0.00 0.00 3.42
4060 6994 0.527817 CACCGATTCGACACCTAGCC 60.528 60.000 7.83 0.00 0.00 3.93
4061 6995 1.299165 CCGATTCGACACCTAGCCG 60.299 63.158 7.83 0.00 0.00 5.52
4062 6996 1.432251 CGATTCGACACCTAGCCGT 59.568 57.895 0.00 0.00 0.00 5.68
4063 6997 0.591741 CGATTCGACACCTAGCCGTC 60.592 60.000 0.00 0.79 0.00 4.79
4064 6998 0.248949 GATTCGACACCTAGCCGTCC 60.249 60.000 4.67 0.00 0.00 4.79
4065 6999 2.001361 ATTCGACACCTAGCCGTCCG 62.001 60.000 4.67 0.00 0.00 4.79
4066 7000 3.129502 CGACACCTAGCCGTCCGA 61.130 66.667 4.67 0.00 0.00 4.55
4067 7001 2.693762 CGACACCTAGCCGTCCGAA 61.694 63.158 4.67 0.00 0.00 4.30
4068 7002 1.153881 GACACCTAGCCGTCCGAAC 60.154 63.158 0.00 0.00 0.00 3.95
4069 7003 1.593296 GACACCTAGCCGTCCGAACT 61.593 60.000 0.00 0.00 0.00 3.01
4070 7004 1.183676 ACACCTAGCCGTCCGAACTT 61.184 55.000 0.00 0.00 0.00 2.66
4071 7005 0.037605 CACCTAGCCGTCCGAACTTT 60.038 55.000 0.00 0.00 0.00 2.66
4072 7006 0.245813 ACCTAGCCGTCCGAACTTTC 59.754 55.000 0.00 0.00 0.00 2.62
4073 7007 0.459759 CCTAGCCGTCCGAACTTTCC 60.460 60.000 0.00 0.00 0.00 3.13
4074 7008 0.459759 CTAGCCGTCCGAACTTTCCC 60.460 60.000 0.00 0.00 0.00 3.97
4075 7009 0.901580 TAGCCGTCCGAACTTTCCCT 60.902 55.000 0.00 0.00 0.00 4.20
4076 7010 1.740664 GCCGTCCGAACTTTCCCTC 60.741 63.158 0.00 0.00 0.00 4.30
4077 7011 1.445582 CCGTCCGAACTTTCCCTCG 60.446 63.158 0.00 0.00 34.83 4.63
4078 7012 2.092882 CGTCCGAACTTTCCCTCGC 61.093 63.158 0.00 0.00 33.70 5.03
4079 7013 1.740664 GTCCGAACTTTCCCTCGCC 60.741 63.158 0.00 0.00 33.70 5.54
4080 7014 2.813908 CCGAACTTTCCCTCGCCG 60.814 66.667 0.00 0.00 33.70 6.46
4081 7015 2.813908 CGAACTTTCCCTCGCCGG 60.814 66.667 0.00 0.00 0.00 6.13
4082 7016 2.346365 GAACTTTCCCTCGCCGGT 59.654 61.111 1.90 0.00 0.00 5.28
4083 7017 1.302271 GAACTTTCCCTCGCCGGTT 60.302 57.895 1.90 0.00 0.00 4.44
4084 7018 0.887836 GAACTTTCCCTCGCCGGTTT 60.888 55.000 1.90 0.00 0.00 3.27
4085 7019 0.397564 AACTTTCCCTCGCCGGTTTA 59.602 50.000 1.90 0.00 0.00 2.01
4086 7020 0.321034 ACTTTCCCTCGCCGGTTTAC 60.321 55.000 1.90 0.00 0.00 2.01
4087 7021 0.320946 CTTTCCCTCGCCGGTTTACA 60.321 55.000 1.90 0.00 0.00 2.41
4088 7022 0.320946 TTTCCCTCGCCGGTTTACAG 60.321 55.000 1.90 0.00 0.00 2.74
4089 7023 1.186917 TTCCCTCGCCGGTTTACAGA 61.187 55.000 1.90 0.00 0.00 3.41
4090 7024 1.186917 TCCCTCGCCGGTTTACAGAA 61.187 55.000 1.90 0.00 0.00 3.02
4091 7025 0.320946 CCCTCGCCGGTTTACAGAAA 60.321 55.000 1.90 0.00 0.00 2.52
4092 7026 0.794473 CCTCGCCGGTTTACAGAAAC 59.206 55.000 1.90 0.00 43.65 2.78
4093 7027 1.504359 CTCGCCGGTTTACAGAAACA 58.496 50.000 1.90 0.00 45.78 2.83
4094 7028 1.868498 CTCGCCGGTTTACAGAAACAA 59.132 47.619 1.90 0.00 45.78 2.83
4095 7029 2.482721 CTCGCCGGTTTACAGAAACAAT 59.517 45.455 1.90 0.00 45.78 2.71
4096 7030 3.661944 TCGCCGGTTTACAGAAACAATA 58.338 40.909 1.90 0.00 45.78 1.90
4097 7031 4.063689 TCGCCGGTTTACAGAAACAATAA 58.936 39.130 1.90 0.00 45.78 1.40
4098 7032 4.696402 TCGCCGGTTTACAGAAACAATAAT 59.304 37.500 1.90 0.00 45.78 1.28
4099 7033 5.873712 TCGCCGGTTTACAGAAACAATAATA 59.126 36.000 1.90 0.00 45.78 0.98
4100 7034 6.370994 TCGCCGGTTTACAGAAACAATAATAA 59.629 34.615 1.90 0.00 45.78 1.40
4101 7035 6.466730 CGCCGGTTTACAGAAACAATAATAAC 59.533 38.462 1.90 0.00 45.78 1.89
4102 7036 6.748658 GCCGGTTTACAGAAACAATAATAACC 59.251 38.462 1.90 0.00 45.78 2.85
4103 7037 7.942145 CGGTTTACAGAAACAATAATAACCG 57.058 36.000 0.00 0.00 45.78 4.44
4104 7038 6.962678 CGGTTTACAGAAACAATAATAACCGG 59.037 38.462 13.12 0.00 46.89 5.28
4105 7039 6.748658 GGTTTACAGAAACAATAATAACCGGC 59.251 38.462 0.00 0.00 45.78 6.13
4106 7040 4.609691 ACAGAAACAATAATAACCGGCG 57.390 40.909 0.00 0.00 0.00 6.46
4107 7041 3.181504 ACAGAAACAATAATAACCGGCGC 60.182 43.478 0.00 0.00 0.00 6.53
4108 7042 2.356695 AGAAACAATAATAACCGGCGCC 59.643 45.455 19.07 19.07 0.00 6.53
4109 7043 2.047002 AACAATAATAACCGGCGCCT 57.953 45.000 26.68 8.66 0.00 5.52
4110 7044 1.305201 ACAATAATAACCGGCGCCTG 58.695 50.000 26.68 21.87 0.00 4.85
4111 7045 0.040425 CAATAATAACCGGCGCCTGC 60.040 55.000 26.68 0.00 41.71 4.85
4112 7046 0.464735 AATAATAACCGGCGCCTGCA 60.465 50.000 26.68 10.21 45.35 4.41
4113 7047 0.884704 ATAATAACCGGCGCCTGCAG 60.885 55.000 26.68 6.78 45.35 4.41
4114 7048 2.246761 TAATAACCGGCGCCTGCAGT 62.247 55.000 26.68 13.63 45.35 4.40
4124 7058 1.723870 GCCTGCAGTGCGAAATAGG 59.276 57.895 13.81 12.18 0.00 2.57
4125 7059 1.718757 GCCTGCAGTGCGAAATAGGG 61.719 60.000 17.52 8.95 0.00 3.53
4126 7060 0.107703 CCTGCAGTGCGAAATAGGGA 60.108 55.000 13.81 0.00 0.00 4.20
4127 7061 1.475751 CCTGCAGTGCGAAATAGGGAT 60.476 52.381 13.81 0.00 0.00 3.85
4128 7062 2.292267 CTGCAGTGCGAAATAGGGATT 58.708 47.619 11.20 0.00 0.00 3.01
4129 7063 2.016318 TGCAGTGCGAAATAGGGATTG 58.984 47.619 11.20 0.00 0.00 2.67
4130 7064 1.268743 GCAGTGCGAAATAGGGATTGC 60.269 52.381 0.00 0.00 32.07 3.56
4131 7065 1.334869 CAGTGCGAAATAGGGATTGCC 59.665 52.381 0.00 0.00 0.00 4.52
4132 7066 0.307760 GTGCGAAATAGGGATTGCCG 59.692 55.000 0.00 0.00 33.83 5.69
4133 7067 0.179234 TGCGAAATAGGGATTGCCGA 59.821 50.000 0.00 0.00 33.83 5.54
4134 7068 0.868406 GCGAAATAGGGATTGCCGAG 59.132 55.000 0.00 0.00 33.83 4.63
4135 7069 1.810412 GCGAAATAGGGATTGCCGAGT 60.810 52.381 0.00 0.00 33.83 4.18
4136 7070 2.135933 CGAAATAGGGATTGCCGAGTC 58.864 52.381 0.00 0.00 33.83 3.36
4137 7071 2.224066 CGAAATAGGGATTGCCGAGTCT 60.224 50.000 0.00 0.00 33.83 3.24
4138 7072 2.918712 AATAGGGATTGCCGAGTCTG 57.081 50.000 0.00 0.00 33.83 3.51
4139 7073 1.794714 ATAGGGATTGCCGAGTCTGT 58.205 50.000 0.00 0.00 33.83 3.41
4140 7074 2.447408 TAGGGATTGCCGAGTCTGTA 57.553 50.000 0.00 0.00 33.83 2.74
4141 7075 1.115467 AGGGATTGCCGAGTCTGTAG 58.885 55.000 0.00 0.00 33.83 2.74
4142 7076 1.112113 GGGATTGCCGAGTCTGTAGA 58.888 55.000 0.00 0.00 33.83 2.59
4143 7077 1.480954 GGGATTGCCGAGTCTGTAGAA 59.519 52.381 0.00 0.00 33.83 2.10
4144 7078 2.093658 GGGATTGCCGAGTCTGTAGAAA 60.094 50.000 0.00 0.00 33.83 2.52
4145 7079 3.190874 GGATTGCCGAGTCTGTAGAAAG 58.809 50.000 0.00 0.00 0.00 2.62
4146 7080 3.368531 GGATTGCCGAGTCTGTAGAAAGT 60.369 47.826 0.00 0.00 0.00 2.66
4147 7081 4.142227 GGATTGCCGAGTCTGTAGAAAGTA 60.142 45.833 0.00 0.00 0.00 2.24
4148 7082 5.452077 GGATTGCCGAGTCTGTAGAAAGTAT 60.452 44.000 0.00 0.00 0.00 2.12
4149 7083 4.634184 TGCCGAGTCTGTAGAAAGTATC 57.366 45.455 0.00 0.00 0.00 2.24
4150 7084 3.064958 TGCCGAGTCTGTAGAAAGTATCG 59.935 47.826 0.00 0.00 0.00 2.92
4151 7085 3.311871 GCCGAGTCTGTAGAAAGTATCGA 59.688 47.826 0.00 0.00 32.02 3.59
4152 7086 4.553156 GCCGAGTCTGTAGAAAGTATCGAG 60.553 50.000 0.00 0.00 32.02 4.04
4153 7087 4.571580 CCGAGTCTGTAGAAAGTATCGAGT 59.428 45.833 0.00 0.00 32.02 4.18
4154 7088 5.276963 CCGAGTCTGTAGAAAGTATCGAGTC 60.277 48.000 0.00 0.00 32.02 3.36
4155 7089 5.554883 CGAGTCTGTAGAAAGTATCGAGTCG 60.555 48.000 6.09 6.09 36.80 4.18
4156 7090 4.571580 AGTCTGTAGAAAGTATCGAGTCGG 59.428 45.833 13.54 0.00 0.00 4.79
4157 7091 4.569966 GTCTGTAGAAAGTATCGAGTCGGA 59.430 45.833 13.54 0.00 0.00 4.55
4158 7092 4.809958 TCTGTAGAAAGTATCGAGTCGGAG 59.190 45.833 13.54 0.00 0.00 4.63
4159 7093 4.511527 TGTAGAAAGTATCGAGTCGGAGT 58.488 43.478 13.54 1.16 0.00 3.85
4160 7094 4.940046 TGTAGAAAGTATCGAGTCGGAGTT 59.060 41.667 13.54 7.58 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 9.708092 AAGGAAGAAATTAAGTGTAGAGTGTAC 57.292 33.333 0.00 0.00 0.00 2.90
100 101 7.373493 CAAGATCTTTTGCTCTACCAACATTT 58.627 34.615 4.86 0.00 0.00 2.32
570 688 7.010460 GTCATGCTTTTATGGGCTCAATAAAAC 59.990 37.037 0.00 0.00 0.00 2.43
713 869 2.762535 ACGGAGGGAGTATGTTTGTG 57.237 50.000 0.00 0.00 0.00 3.33
714 870 2.027469 GGAACGGAGGGAGTATGTTTGT 60.027 50.000 0.00 0.00 0.00 2.83
719 875 3.560636 ATTTGGAACGGAGGGAGTATG 57.439 47.619 0.00 0.00 0.00 2.39
721 877 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
722 878 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
723 879 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
724 880 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
725 881 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
726 882 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
727 883 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
729 885 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
730 886 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
731 887 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
732 888 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
733 889 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
734 890 4.092821 TCATTTCTGCGACGAGTAATTTGG 59.907 41.667 0.00 0.00 0.00 3.28
735 891 5.203358 TCATTTCTGCGACGAGTAATTTG 57.797 39.130 0.00 0.00 0.00 2.32
736 892 5.856126 TTCATTTCTGCGACGAGTAATTT 57.144 34.783 0.00 0.00 0.00 1.82
737 893 5.351465 ACATTCATTTCTGCGACGAGTAATT 59.649 36.000 0.00 0.00 0.00 1.40
740 896 3.845178 ACATTCATTTCTGCGACGAGTA 58.155 40.909 0.00 0.00 0.00 2.59
743 899 4.682787 AGATACATTCATTTCTGCGACGA 58.317 39.130 0.00 0.00 0.00 4.20
744 900 5.915196 TCTAGATACATTCATTTCTGCGACG 59.085 40.000 0.00 0.00 0.00 5.12
745 901 7.436673 AGTTCTAGATACATTCATTTCTGCGAC 59.563 37.037 0.00 0.00 0.00 5.19
746 902 7.492524 AGTTCTAGATACATTCATTTCTGCGA 58.507 34.615 0.00 0.00 0.00 5.10
776 932 7.610305 TCGCAGGTATGAATGTATCTAGATGTA 59.390 37.037 15.79 4.44 0.00 2.29
777 933 6.434340 TCGCAGGTATGAATGTATCTAGATGT 59.566 38.462 15.79 0.00 0.00 3.06
779 935 6.434340 TGTCGCAGGTATGAATGTATCTAGAT 59.566 38.462 10.73 10.73 0.00 1.98
781 937 6.013842 TGTCGCAGGTATGAATGTATCTAG 57.986 41.667 0.00 0.00 0.00 2.43
782 938 6.399639 TTGTCGCAGGTATGAATGTATCTA 57.600 37.500 0.00 0.00 0.00 1.98
783 939 4.937201 TGTCGCAGGTATGAATGTATCT 57.063 40.909 0.00 0.00 0.00 1.98
784 940 5.984233 TTTGTCGCAGGTATGAATGTATC 57.016 39.130 0.00 0.00 0.00 2.24
785 941 8.621532 ATTATTTGTCGCAGGTATGAATGTAT 57.378 30.769 0.00 0.00 0.00 2.29
786 942 8.445275 AATTATTTGTCGCAGGTATGAATGTA 57.555 30.769 0.00 0.00 0.00 2.29
788 944 6.574832 CGAATTATTTGTCGCAGGTATGAATG 59.425 38.462 0.00 0.00 0.00 2.67
789 945 6.293407 CCGAATTATTTGTCGCAGGTATGAAT 60.293 38.462 0.00 0.00 35.93 2.57
791 947 4.509970 CCGAATTATTTGTCGCAGGTATGA 59.490 41.667 0.00 0.00 35.93 2.15
792 948 4.509970 TCCGAATTATTTGTCGCAGGTATG 59.490 41.667 0.00 0.00 35.93 2.39
793 949 4.699637 TCCGAATTATTTGTCGCAGGTAT 58.300 39.130 0.00 0.00 35.93 2.73
794 950 4.126208 TCCGAATTATTTGTCGCAGGTA 57.874 40.909 0.00 0.00 35.93 3.08
795 951 2.980568 TCCGAATTATTTGTCGCAGGT 58.019 42.857 0.00 0.00 35.93 4.00
796 952 3.680789 GTTCCGAATTATTTGTCGCAGG 58.319 45.455 0.00 0.00 35.93 4.85
797 953 3.342269 CGTTCCGAATTATTTGTCGCAG 58.658 45.455 0.00 0.00 35.93 5.18
799 955 2.349275 TCCGTTCCGAATTATTTGTCGC 59.651 45.455 0.00 0.00 35.93 5.19
800 956 3.000925 CCTCCGTTCCGAATTATTTGTCG 59.999 47.826 0.00 0.00 37.01 4.35
801 957 3.311596 CCCTCCGTTCCGAATTATTTGTC 59.688 47.826 0.00 0.00 0.00 3.18
802 958 3.054948 TCCCTCCGTTCCGAATTATTTGT 60.055 43.478 0.00 0.00 0.00 2.83
803 959 3.537580 TCCCTCCGTTCCGAATTATTTG 58.462 45.455 0.00 0.00 0.00 2.32
804 960 3.199289 ACTCCCTCCGTTCCGAATTATTT 59.801 43.478 0.00 0.00 0.00 1.40
806 962 2.395619 ACTCCCTCCGTTCCGAATTAT 58.604 47.619 0.00 0.00 0.00 1.28
807 963 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
808 964 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
811 967 1.751927 GCTACTCCCTCCGTTCCGA 60.752 63.158 0.00 0.00 0.00 4.55
812 968 2.005960 CTGCTACTCCCTCCGTTCCG 62.006 65.000 0.00 0.00 0.00 4.30
813 969 0.971447 ACTGCTACTCCCTCCGTTCC 60.971 60.000 0.00 0.00 0.00 3.62
814 970 0.896226 AACTGCTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
815 971 1.002087 CAAACTGCTACTCCCTCCGTT 59.998 52.381 0.00 0.00 0.00 4.44
816 972 0.608640 CAAACTGCTACTCCCTCCGT 59.391 55.000 0.00 0.00 0.00 4.69
818 974 2.224548 ACAACAAACTGCTACTCCCTCC 60.225 50.000 0.00 0.00 0.00 4.30
819 975 2.808543 CACAACAAACTGCTACTCCCTC 59.191 50.000 0.00 0.00 0.00 4.30
820 976 2.487265 CCACAACAAACTGCTACTCCCT 60.487 50.000 0.00 0.00 0.00 4.20
821 977 1.880027 CCACAACAAACTGCTACTCCC 59.120 52.381 0.00 0.00 0.00 4.30
822 978 2.548480 GTCCACAACAAACTGCTACTCC 59.452 50.000 0.00 0.00 0.00 3.85
823 979 3.202906 TGTCCACAACAAACTGCTACTC 58.797 45.455 0.00 0.00 34.03 2.59
824 980 3.275617 TGTCCACAACAAACTGCTACT 57.724 42.857 0.00 0.00 34.03 2.57
825 981 4.568152 AATGTCCACAACAAACTGCTAC 57.432 40.909 0.00 0.00 42.37 3.58
856 1408 3.606687 CTTGGGCCGTGTAAGTTAGATT 58.393 45.455 0.00 0.00 0.00 2.40
868 1420 0.629058 AAATATGTCCCTTGGGCCGT 59.371 50.000 0.00 0.00 0.00 5.68
1003 1595 1.149101 TCTTGGTTTCTTGGGGCTCT 58.851 50.000 0.00 0.00 0.00 4.09
1218 1865 3.430862 GCCGCGTTCATGGAAGCA 61.431 61.111 12.62 0.00 0.00 3.91
1570 2258 2.345760 CCACCCAGTGCATCTTGGC 61.346 63.158 8.82 0.00 32.79 4.52
1720 2456 7.655328 TGGAATTAACACGATTTGCAATCTTTT 59.345 29.630 0.00 0.00 0.00 2.27
1858 2644 2.124736 CAACACGGGGCCGATGAT 60.125 61.111 12.20 0.00 42.83 2.45
2527 3594 5.798132 TGTGAAGCTCAACTGATATGACTT 58.202 37.500 0.00 0.00 0.00 3.01
2604 3683 4.546674 ACCTGAAAACAATCCCAGAAACT 58.453 39.130 0.00 0.00 0.00 2.66
2605 3684 4.937201 ACCTGAAAACAATCCCAGAAAC 57.063 40.909 0.00 0.00 0.00 2.78
2606 3685 5.948742 AAACCTGAAAACAATCCCAGAAA 57.051 34.783 0.00 0.00 0.00 2.52
2607 3686 5.188751 ACAAAACCTGAAAACAATCCCAGAA 59.811 36.000 0.00 0.00 0.00 3.02
2608 3687 4.714308 ACAAAACCTGAAAACAATCCCAGA 59.286 37.500 0.00 0.00 0.00 3.86
2612 3691 7.206687 TGATGTACAAAACCTGAAAACAATCC 58.793 34.615 0.00 0.00 0.00 3.01
2613 3692 8.539674 GTTGATGTACAAAACCTGAAAACAATC 58.460 33.333 0.00 0.00 40.36 2.67
2822 5625 4.273318 GAACCCCTATCTCACTGCAAAAT 58.727 43.478 0.00 0.00 0.00 1.82
2883 5687 1.056660 TGTCAGGAGAAGGGACCAAC 58.943 55.000 0.00 0.00 0.00 3.77
2927 5731 8.801913 GTTCAAGCACTTAATATCTGAATTTGC 58.198 33.333 0.00 0.00 0.00 3.68
2987 5791 6.819397 ACTTTAAGTGGTTGGAATAAGAGC 57.181 37.500 0.00 0.00 0.00 4.09
2998 5802 6.060136 GGTAGGACTGAAACTTTAAGTGGTT 58.940 40.000 0.00 0.00 0.00 3.67
2999 5803 5.455755 GGGTAGGACTGAAACTTTAAGTGGT 60.456 44.000 0.00 0.00 0.00 4.16
3023 5827 6.644592 GGAAACATGCTCTGCTATAGACTAAG 59.355 42.308 3.21 0.00 0.00 2.18
3024 5828 6.098266 TGGAAACATGCTCTGCTATAGACTAA 59.902 38.462 3.21 0.00 33.40 2.24
3025 5829 5.598417 TGGAAACATGCTCTGCTATAGACTA 59.402 40.000 3.21 0.00 33.40 2.59
3026 5830 4.406972 TGGAAACATGCTCTGCTATAGACT 59.593 41.667 3.21 0.00 33.40 3.24
3027 5831 4.697514 TGGAAACATGCTCTGCTATAGAC 58.302 43.478 3.21 0.00 33.40 2.59
3028 5832 4.741837 GCTGGAAACATGCTCTGCTATAGA 60.742 45.833 3.21 0.00 41.51 1.98
3029 5833 3.497640 GCTGGAAACATGCTCTGCTATAG 59.502 47.826 0.00 0.00 41.51 1.31
3080 5893 4.112634 ACTTCTGGGCAACAAATCCTTA 57.887 40.909 0.00 0.00 39.74 2.69
3081 5894 2.962859 ACTTCTGGGCAACAAATCCTT 58.037 42.857 0.00 0.00 39.74 3.36
3084 5897 3.733443 ACAACTTCTGGGCAACAAATC 57.267 42.857 0.00 0.00 39.74 2.17
3085 5898 3.795877 CAACAACTTCTGGGCAACAAAT 58.204 40.909 0.00 0.00 39.74 2.32
3086 5899 2.676463 GCAACAACTTCTGGGCAACAAA 60.676 45.455 0.00 0.00 39.74 2.83
3087 5900 1.134848 GCAACAACTTCTGGGCAACAA 60.135 47.619 0.00 0.00 39.74 2.83
3088 5901 0.459489 GCAACAACTTCTGGGCAACA 59.541 50.000 0.00 0.00 39.74 3.33
3089 5902 0.249447 GGCAACAACTTCTGGGCAAC 60.249 55.000 0.00 0.00 32.68 4.17
3090 5903 2.123409 GGCAACAACTTCTGGGCAA 58.877 52.632 0.00 0.00 32.68 4.52
3091 5904 3.854856 GGCAACAACTTCTGGGCA 58.145 55.556 0.00 0.00 32.68 5.36
3188 6009 2.749621 GCACATAACCAAGACAGGGAAG 59.250 50.000 0.00 0.00 0.00 3.46
3226 6047 9.110502 CTCTAAAAATAACTATTCTCGGGCTTT 57.889 33.333 0.00 0.00 0.00 3.51
3254 6075 9.430623 AGTTGCTAAACAAAAATACAAACTTGT 57.569 25.926 0.07 0.07 40.82 3.16
3257 6078 9.869757 AGAAGTTGCTAAACAAAAATACAAACT 57.130 25.926 0.00 0.00 40.82 2.66
3258 6079 9.900264 CAGAAGTTGCTAAACAAAAATACAAAC 57.100 29.630 0.00 0.00 40.82 2.93
3259 6080 9.862371 TCAGAAGTTGCTAAACAAAAATACAAA 57.138 25.926 0.00 0.00 40.82 2.83
3260 6081 9.862371 TTCAGAAGTTGCTAAACAAAAATACAA 57.138 25.926 0.00 0.00 40.82 2.41
3265 6086 9.730420 GACTATTCAGAAGTTGCTAAACAAAAA 57.270 29.630 0.00 0.00 40.82 1.94
3266 6087 8.349983 GGACTATTCAGAAGTTGCTAAACAAAA 58.650 33.333 0.00 0.00 40.82 2.44
3267 6088 7.307751 CGGACTATTCAGAAGTTGCTAAACAAA 60.308 37.037 0.00 0.00 40.82 2.83
3268 6089 6.147164 CGGACTATTCAGAAGTTGCTAAACAA 59.853 38.462 0.00 0.00 38.88 2.83
3269 6090 5.637810 CGGACTATTCAGAAGTTGCTAAACA 59.362 40.000 0.00 0.00 38.88 2.83
3270 6091 5.638234 ACGGACTATTCAGAAGTTGCTAAAC 59.362 40.000 0.00 0.00 36.47 2.01
3271 6092 5.790593 ACGGACTATTCAGAAGTTGCTAAA 58.209 37.500 0.00 0.00 0.00 1.85
3272 6093 5.401531 ACGGACTATTCAGAAGTTGCTAA 57.598 39.130 0.00 0.00 0.00 3.09
3273 6094 6.405508 CCTTACGGACTATTCAGAAGTTGCTA 60.406 42.308 0.00 0.00 0.00 3.49
3274 6095 3.963428 ACGGACTATTCAGAAGTTGCT 57.037 42.857 0.00 0.00 0.00 3.91
3275 6096 4.567159 CCTTACGGACTATTCAGAAGTTGC 59.433 45.833 0.00 0.00 0.00 4.17
3276 6097 5.962433 TCCTTACGGACTATTCAGAAGTTG 58.038 41.667 0.00 0.00 33.30 3.16
3277 6098 5.394333 GCTCCTTACGGACTATTCAGAAGTT 60.394 44.000 0.00 0.00 34.92 2.66
3278 6099 4.098196 GCTCCTTACGGACTATTCAGAAGT 59.902 45.833 0.00 0.00 34.92 3.01
3279 6100 4.339814 AGCTCCTTACGGACTATTCAGAAG 59.660 45.833 0.00 0.00 34.92 2.85
3280 6101 4.279145 AGCTCCTTACGGACTATTCAGAA 58.721 43.478 0.00 0.00 34.92 3.02
3281 6102 3.884091 GAGCTCCTTACGGACTATTCAGA 59.116 47.826 0.87 0.00 34.92 3.27
3282 6103 3.004944 GGAGCTCCTTACGGACTATTCAG 59.995 52.174 26.25 0.00 34.92 3.02
3283 6104 2.957006 GGAGCTCCTTACGGACTATTCA 59.043 50.000 26.25 0.00 34.92 2.57
3284 6105 2.296752 GGGAGCTCCTTACGGACTATTC 59.703 54.545 31.36 6.88 34.92 1.75
3285 6106 2.317973 GGGAGCTCCTTACGGACTATT 58.682 52.381 31.36 0.00 34.92 1.73
3286 6107 1.217183 TGGGAGCTCCTTACGGACTAT 59.783 52.381 31.36 0.00 34.92 2.12
3287 6108 0.627451 TGGGAGCTCCTTACGGACTA 59.373 55.000 31.36 0.00 34.92 2.59
3288 6109 0.032017 ATGGGAGCTCCTTACGGACT 60.032 55.000 31.36 3.96 34.92 3.85
3289 6110 0.831307 AATGGGAGCTCCTTACGGAC 59.169 55.000 31.36 13.93 34.92 4.79
3290 6111 0.830648 CAATGGGAGCTCCTTACGGA 59.169 55.000 31.36 9.76 37.82 4.69
3291 6112 0.179045 CCAATGGGAGCTCCTTACGG 60.179 60.000 31.36 21.94 35.59 4.02
3292 6113 3.386543 CCAATGGGAGCTCCTTACG 57.613 57.895 31.36 17.42 35.59 3.18
3304 6125 3.211963 GCCTACAGCGCCCAATGG 61.212 66.667 2.29 1.19 0.00 3.16
3305 6126 2.764314 GTGCCTACAGCGCCCAATG 61.764 63.158 2.29 0.00 46.76 2.82
3306 6127 2.438434 GTGCCTACAGCGCCCAAT 60.438 61.111 2.29 0.00 46.76 3.16
3322 6143 2.430367 GCCACTTCTCCAACGGGT 59.570 61.111 0.00 0.00 34.93 5.28
3361 6182 0.988832 TCTTCTTAATGGGCCGTGGT 59.011 50.000 0.00 0.00 0.00 4.16
3383 6205 4.625800 CGAAGGAAGCAAGGGAGG 57.374 61.111 0.00 0.00 0.00 4.30
3424 6246 3.108289 CAGCGAGGCGAGTGTGTG 61.108 66.667 0.00 0.00 0.00 3.82
3425 6247 2.644555 AAACAGCGAGGCGAGTGTGT 62.645 55.000 0.00 0.00 0.00 3.72
3446 6269 1.824230 AGCACAACACAGGCTGAAAAA 59.176 42.857 23.66 0.00 36.34 1.94
3506 6330 8.792633 TCTTTTTCCTCACGAACATATTCAAAT 58.207 29.630 0.00 0.00 34.14 2.32
3593 6432 8.915871 ATGAACTTTTTACAAATCCGATGATG 57.084 30.769 0.00 0.00 0.00 3.07
3594 6433 8.739039 TGATGAACTTTTTACAAATCCGATGAT 58.261 29.630 0.00 0.00 0.00 2.45
3656 6496 8.504812 TCCAATGAACTCATTTTGATTCGATA 57.495 30.769 2.11 0.00 43.48 2.92
3927 6860 1.702182 TGCCCTCAATGTTTTCTGCA 58.298 45.000 0.00 0.00 0.00 4.41
3928 6861 3.323751 AATGCCCTCAATGTTTTCTGC 57.676 42.857 0.00 0.00 0.00 4.26
3929 6862 3.434299 GCAAATGCCCTCAATGTTTTCTG 59.566 43.478 0.00 0.00 34.31 3.02
3939 6872 2.512692 ACATACAGCAAATGCCCTCA 57.487 45.000 0.94 0.00 43.38 3.86
3943 6876 6.040391 TCCCTTTTATACATACAGCAAATGCC 59.960 38.462 0.94 0.00 43.38 4.40
3946 6879 7.582719 TCCTCCCTTTTATACATACAGCAAAT 58.417 34.615 0.00 0.00 0.00 2.32
3949 6882 6.569127 TTCCTCCCTTTTATACATACAGCA 57.431 37.500 0.00 0.00 0.00 4.41
3950 6883 6.486993 CCTTTCCTCCCTTTTATACATACAGC 59.513 42.308 0.00 0.00 0.00 4.40
3965 6898 3.621558 CATACAAACCTCCTTTCCTCCC 58.378 50.000 0.00 0.00 0.00 4.30
3968 6901 3.806949 TGCATACAAACCTCCTTTCCT 57.193 42.857 0.00 0.00 0.00 3.36
3975 6908 2.098117 GCCACTCATGCATACAAACCTC 59.902 50.000 0.00 0.00 0.00 3.85
3976 6909 2.094675 GCCACTCATGCATACAAACCT 58.905 47.619 0.00 0.00 0.00 3.50
3977 6910 1.818060 TGCCACTCATGCATACAAACC 59.182 47.619 0.00 0.00 32.85 3.27
3978 6911 2.728846 CGTGCCACTCATGCATACAAAC 60.729 50.000 0.00 0.00 41.46 2.93
3986 6919 2.562912 CCAACGTGCCACTCATGC 59.437 61.111 0.00 0.00 35.07 4.06
4000 6934 0.687920 TCCACTTACCATGACGCCAA 59.312 50.000 0.00 0.00 0.00 4.52
4004 6938 3.119101 AGCTAACTCCACTTACCATGACG 60.119 47.826 0.00 0.00 0.00 4.35
4007 6941 6.161855 TGATAGCTAACTCCACTTACCATG 57.838 41.667 0.00 0.00 0.00 3.66
4008 6942 6.156256 TGTTGATAGCTAACTCCACTTACCAT 59.844 38.462 0.00 0.00 0.00 3.55
4013 6947 6.360370 TTCTGTTGATAGCTAACTCCACTT 57.640 37.500 0.00 0.00 0.00 3.16
4014 6948 6.211584 TCTTTCTGTTGATAGCTAACTCCACT 59.788 38.462 0.00 0.00 0.00 4.00
4015 6949 6.398918 TCTTTCTGTTGATAGCTAACTCCAC 58.601 40.000 0.00 0.00 0.00 4.02
4022 6956 5.359860 TCGGTGATCTTTCTGTTGATAGCTA 59.640 40.000 0.00 0.00 0.00 3.32
4023 6957 4.160439 TCGGTGATCTTTCTGTTGATAGCT 59.840 41.667 0.00 0.00 0.00 3.32
4033 6967 3.512680 GTGTCGAATCGGTGATCTTTCT 58.487 45.455 1.76 0.00 0.00 2.52
4034 6968 2.603560 GGTGTCGAATCGGTGATCTTTC 59.396 50.000 1.76 0.00 0.00 2.62
4035 6969 2.233922 AGGTGTCGAATCGGTGATCTTT 59.766 45.455 1.76 0.00 0.00 2.52
4036 6970 1.825474 AGGTGTCGAATCGGTGATCTT 59.175 47.619 1.76 0.00 0.00 2.40
4037 6971 1.475403 AGGTGTCGAATCGGTGATCT 58.525 50.000 1.76 0.00 0.00 2.75
4038 6972 2.859032 GCTAGGTGTCGAATCGGTGATC 60.859 54.545 1.76 0.00 0.00 2.92
4039 6973 1.067212 GCTAGGTGTCGAATCGGTGAT 59.933 52.381 1.76 0.00 0.00 3.06
4040 6974 0.454600 GCTAGGTGTCGAATCGGTGA 59.545 55.000 1.76 0.00 0.00 4.02
4041 6975 0.527817 GGCTAGGTGTCGAATCGGTG 60.528 60.000 1.76 0.00 0.00 4.94
4042 6976 1.814527 GGCTAGGTGTCGAATCGGT 59.185 57.895 1.76 0.00 0.00 4.69
4043 6977 4.732106 GGCTAGGTGTCGAATCGG 57.268 61.111 1.76 0.00 0.00 4.18
4050 6984 1.153881 GTTCGGACGGCTAGGTGTC 60.154 63.158 0.00 0.00 0.00 3.67
4051 6985 1.183676 AAGTTCGGACGGCTAGGTGT 61.184 55.000 0.00 0.00 0.00 4.16
4052 6986 0.037605 AAAGTTCGGACGGCTAGGTG 60.038 55.000 0.00 0.00 0.00 4.00
4053 6987 0.245813 GAAAGTTCGGACGGCTAGGT 59.754 55.000 0.00 0.00 0.00 3.08
4054 6988 0.459759 GGAAAGTTCGGACGGCTAGG 60.460 60.000 0.00 0.00 0.00 3.02
4055 6989 0.459759 GGGAAAGTTCGGACGGCTAG 60.460 60.000 0.00 0.00 0.00 3.42
4056 6990 0.901580 AGGGAAAGTTCGGACGGCTA 60.902 55.000 0.00 0.00 0.00 3.93
4057 6991 2.168666 GAGGGAAAGTTCGGACGGCT 62.169 60.000 0.00 0.00 0.00 5.52
4058 6992 1.740664 GAGGGAAAGTTCGGACGGC 60.741 63.158 0.00 0.00 0.00 5.68
4059 6993 1.445582 CGAGGGAAAGTTCGGACGG 60.446 63.158 0.00 0.00 33.39 4.79
4060 6994 2.092882 GCGAGGGAAAGTTCGGACG 61.093 63.158 0.00 0.00 37.30 4.79
4061 6995 1.740664 GGCGAGGGAAAGTTCGGAC 60.741 63.158 0.00 0.00 37.30 4.79
4062 6996 2.660802 GGCGAGGGAAAGTTCGGA 59.339 61.111 0.00 0.00 37.30 4.55
4063 6997 2.813908 CGGCGAGGGAAAGTTCGG 60.814 66.667 0.00 0.00 37.30 4.30
4064 6998 2.813908 CCGGCGAGGGAAAGTTCG 60.814 66.667 9.30 0.00 39.69 3.95
4065 6999 0.887836 AAACCGGCGAGGGAAAGTTC 60.888 55.000 9.30 0.00 46.96 3.01
4066 7000 0.397564 TAAACCGGCGAGGGAAAGTT 59.602 50.000 9.30 0.00 46.96 2.66
4067 7001 0.321034 GTAAACCGGCGAGGGAAAGT 60.321 55.000 9.30 0.00 46.96 2.66
4068 7002 0.320946 TGTAAACCGGCGAGGGAAAG 60.321 55.000 9.30 0.00 46.96 2.62
4069 7003 0.320946 CTGTAAACCGGCGAGGGAAA 60.321 55.000 9.30 0.00 46.96 3.13
4070 7004 1.186917 TCTGTAAACCGGCGAGGGAA 61.187 55.000 9.30 0.00 46.96 3.97
4071 7005 1.186917 TTCTGTAAACCGGCGAGGGA 61.187 55.000 9.30 0.00 46.96 4.20
4072 7006 0.320946 TTTCTGTAAACCGGCGAGGG 60.321 55.000 9.30 0.00 46.96 4.30
4073 7007 1.874739 TGTTTCTGTAAACCGGCGAGG 60.875 52.381 9.30 0.00 43.66 4.63
4074 7008 1.504359 TGTTTCTGTAAACCGGCGAG 58.496 50.000 9.30 0.06 43.66 5.03
4075 7009 1.950828 TTGTTTCTGTAAACCGGCGA 58.049 45.000 9.30 0.00 43.66 5.54
4076 7010 2.981400 ATTGTTTCTGTAAACCGGCG 57.019 45.000 0.00 0.00 43.66 6.46
4077 7011 6.748658 GGTTATTATTGTTTCTGTAAACCGGC 59.251 38.462 0.00 0.00 43.66 6.13
4080 7014 6.748658 GCCGGTTATTATTGTTTCTGTAAACC 59.251 38.462 1.90 0.00 43.66 3.27
4081 7015 6.466730 CGCCGGTTATTATTGTTTCTGTAAAC 59.533 38.462 1.90 0.00 44.40 2.01
4082 7016 6.544622 CGCCGGTTATTATTGTTTCTGTAAA 58.455 36.000 1.90 0.00 0.00 2.01
4083 7017 5.447548 GCGCCGGTTATTATTGTTTCTGTAA 60.448 40.000 1.90 0.00 0.00 2.41
4084 7018 4.034279 GCGCCGGTTATTATTGTTTCTGTA 59.966 41.667 1.90 0.00 0.00 2.74
4085 7019 3.181504 GCGCCGGTTATTATTGTTTCTGT 60.182 43.478 1.90 0.00 0.00 3.41
4086 7020 3.359654 GCGCCGGTTATTATTGTTTCTG 58.640 45.455 1.90 0.00 0.00 3.02
4087 7021 2.356695 GGCGCCGGTTATTATTGTTTCT 59.643 45.455 12.58 0.00 0.00 2.52
4088 7022 2.356695 AGGCGCCGGTTATTATTGTTTC 59.643 45.455 23.20 0.00 0.00 2.78
4089 7023 2.098443 CAGGCGCCGGTTATTATTGTTT 59.902 45.455 23.20 0.00 0.00 2.83
4090 7024 1.673920 CAGGCGCCGGTTATTATTGTT 59.326 47.619 23.20 0.00 0.00 2.83
4091 7025 1.305201 CAGGCGCCGGTTATTATTGT 58.695 50.000 23.20 0.00 0.00 2.71
4092 7026 0.040425 GCAGGCGCCGGTTATTATTG 60.040 55.000 27.43 14.87 0.00 1.90
4093 7027 0.464735 TGCAGGCGCCGGTTATTATT 60.465 50.000 27.43 0.00 37.32 1.40
4094 7028 0.884704 CTGCAGGCGCCGGTTATTAT 60.885 55.000 27.43 0.79 37.32 1.28
4095 7029 1.522806 CTGCAGGCGCCGGTTATTA 60.523 57.895 27.43 8.64 37.32 0.98
4096 7030 2.824041 CTGCAGGCGCCGGTTATT 60.824 61.111 27.43 2.54 37.32 1.40
4097 7031 4.096003 ACTGCAGGCGCCGGTTAT 62.096 61.111 27.43 10.42 37.32 1.89
4106 7040 1.718757 CCCTATTTCGCACTGCAGGC 61.719 60.000 19.93 17.02 0.00 4.85
4107 7041 0.107703 TCCCTATTTCGCACTGCAGG 60.108 55.000 19.93 8.27 0.00 4.85
4108 7042 1.959042 ATCCCTATTTCGCACTGCAG 58.041 50.000 13.48 13.48 0.00 4.41
4109 7043 2.016318 CAATCCCTATTTCGCACTGCA 58.984 47.619 1.11 0.00 0.00 4.41
4110 7044 1.268743 GCAATCCCTATTTCGCACTGC 60.269 52.381 0.00 0.00 0.00 4.40
4111 7045 1.334869 GGCAATCCCTATTTCGCACTG 59.665 52.381 0.00 0.00 0.00 3.66
4112 7046 1.680338 GGCAATCCCTATTTCGCACT 58.320 50.000 0.00 0.00 0.00 4.40
4113 7047 0.307760 CGGCAATCCCTATTTCGCAC 59.692 55.000 0.00 0.00 0.00 5.34
4114 7048 0.179234 TCGGCAATCCCTATTTCGCA 59.821 50.000 0.00 0.00 0.00 5.10
4115 7049 0.868406 CTCGGCAATCCCTATTTCGC 59.132 55.000 0.00 0.00 0.00 4.70
4116 7050 2.135933 GACTCGGCAATCCCTATTTCG 58.864 52.381 0.00 0.00 0.00 3.46
4117 7051 3.134458 CAGACTCGGCAATCCCTATTTC 58.866 50.000 0.00 0.00 0.00 2.17
4118 7052 2.505819 ACAGACTCGGCAATCCCTATTT 59.494 45.455 0.00 0.00 0.00 1.40
4119 7053 2.119495 ACAGACTCGGCAATCCCTATT 58.881 47.619 0.00 0.00 0.00 1.73
4120 7054 1.794714 ACAGACTCGGCAATCCCTAT 58.205 50.000 0.00 0.00 0.00 2.57
4121 7055 2.092049 TCTACAGACTCGGCAATCCCTA 60.092 50.000 0.00 0.00 0.00 3.53
4122 7056 1.115467 CTACAGACTCGGCAATCCCT 58.885 55.000 0.00 0.00 0.00 4.20
4123 7057 1.112113 TCTACAGACTCGGCAATCCC 58.888 55.000 0.00 0.00 0.00 3.85
4124 7058 2.961526 TTCTACAGACTCGGCAATCC 57.038 50.000 0.00 0.00 0.00 3.01
4125 7059 3.851098 ACTTTCTACAGACTCGGCAATC 58.149 45.455 0.00 0.00 0.00 2.67
4126 7060 3.963428 ACTTTCTACAGACTCGGCAAT 57.037 42.857 0.00 0.00 0.00 3.56
4127 7061 4.438336 CGATACTTTCTACAGACTCGGCAA 60.438 45.833 0.00 0.00 0.00 4.52
4128 7062 3.064958 CGATACTTTCTACAGACTCGGCA 59.935 47.826 0.00 0.00 0.00 5.69
4129 7063 3.311871 TCGATACTTTCTACAGACTCGGC 59.688 47.826 0.00 0.00 0.00 5.54
4130 7064 4.571580 ACTCGATACTTTCTACAGACTCGG 59.428 45.833 0.00 0.00 0.00 4.63
4131 7065 5.554883 CGACTCGATACTTTCTACAGACTCG 60.555 48.000 0.00 0.00 0.00 4.18
4132 7066 5.276963 CCGACTCGATACTTTCTACAGACTC 60.277 48.000 0.00 0.00 0.00 3.36
4133 7067 4.571580 CCGACTCGATACTTTCTACAGACT 59.428 45.833 0.00 0.00 0.00 3.24
4134 7068 4.569966 TCCGACTCGATACTTTCTACAGAC 59.430 45.833 0.00 0.00 0.00 3.51
4135 7069 4.763073 TCCGACTCGATACTTTCTACAGA 58.237 43.478 0.00 0.00 0.00 3.41
4136 7070 4.571580 ACTCCGACTCGATACTTTCTACAG 59.428 45.833 0.00 0.00 0.00 2.74
4137 7071 4.511527 ACTCCGACTCGATACTTTCTACA 58.488 43.478 0.00 0.00 0.00 2.74
4138 7072 5.482686 AACTCCGACTCGATACTTTCTAC 57.517 43.478 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.