AutoCloner

Multiple sequence alignment - TraesCS7B01G011500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G011500	chr7B	100.000	3146	0	0	1	3146	7359177	7356032	0.000000e+00	5810.0
1	TraesCS7B01G011500	chr7D	91.549	2615	136	39	594	3146	65732733	65730142	0.000000e+00	3526.0
2	TraesCS7B01G011500	chr7D	76.410	390	65	19	1114	1494	68790288	68790659	5.360000e-43	185.0
3	TraesCS7B01G011500	chr7D	79.885	174	24	6	1117	1289	65601120	65600957	1.980000e-22	117.0
4	TraesCS7B01G011500	chr7D	74.302	179	38	7	2974	3146	421452945	421453121	5.630000e-08	69.4
5	TraesCS7B01G011500	chr7A	91.035	1584	116	16	577	2147	69974259	69975829	0.000000e+00	2115.0
6	TraesCS7B01G011500	chr7A	97.814	549	10	1	1	549	155970486	155969940	0.000000e+00	946.0
7	TraesCS7B01G011500	chr7A	82.500	360	35	14	2165	2510	69829461	69829806	1.100000e-74	291.0
8	TraesCS7B01G011500	chr7A	78.477	302	51	12	1200	1494	71145930	71145636	5.360000e-43	185.0
9	TraesCS7B01G011500	chr7A	87.179	117	9	4	2385	2496	70043418	70043533	9.160000e-26	128.0
10	TraesCS7B01G011500	chr7A	80.114	176	26	5	1114	1289	69901522	69901688	4.260000e-24	122.0
11	TraesCS7B01G011500	chr7A	75.610	164	27	13	1740	1895	70095701	70095859	5.630000e-08	69.4
12	TraesCS7B01G011500	chr3A	97.996	549	11	0	1	549	7250729	7251277	0.000000e+00	953.0
13	TraesCS7B01G011500	chr3A	80.628	191	27	8	1100	1289	120223518	120223699	4.230000e-29	139.0
14	TraesCS7B01G011500	chr2B	97.649	553	13	0	1	553	27525344	27524792	0.000000e+00	950.0
15	TraesCS7B01G011500	chr2B	97.459	551	10	1	1	551	74695500	74696046	0.000000e+00	937.0
16	TraesCS7B01G011500	chr2B	80.769	156	27	2	2994	3146	782787576	782787731	5.510000e-23	119.0
17	TraesCS7B01G011500	chr3B	97.814	549	10	1	1	549	443350987	443350441	0.000000e+00	946.0
18	TraesCS7B01G011500	chr3B	97.455	550	12	1	1	550	177497473	177496926	0.000000e+00	937.0
19	TraesCS7B01G011500	chr6B	97.636	550	13	0	1	550	247053604	247053055	0.000000e+00	944.0
20	TraesCS7B01G011500	chr5B	97.632	549	9	1	1	549	121689983	121690527	0.000000e+00	939.0
21	TraesCS7B01G011500	chr5A	97.288	553	10	2	1	552	109294754	109294206	0.000000e+00	933.0
22	TraesCS7B01G011500	chrUn	78.092	283	52	5	2874	3146	31196949	31196667	1.500000e-38	171.0
23	TraesCS7B01G011500	chrUn	80.460	174	23	5	1117	1289	84040047	84039884	4.260000e-24	122.0
24	TraesCS7B01G011500	chr3D	80.105	191	28	8	1100	1289	110245409	110245228	1.970000e-27	134.0
25	TraesCS7B01G011500	chr4D	82.707	133	19	2	3015	3144	335181393	335181524	7.130000e-22	115.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G011500	chr7B	7356032	7359177	3145	True	5810	5810	100.000	1	3146	1	chr7B.!!$R1	3145
1	TraesCS7B01G011500	chr7D	65730142	65732733	2591	True	3526	3526	91.549	594	3146	1	chr7D.!!$R2	2552
2	TraesCS7B01G011500	chr7A	69974259	69975829	1570	False	2115	2115	91.035	577	2147	1	chr7A.!!$F3	1570
3	TraesCS7B01G011500	chr7A	155969940	155970486	546	True	946	946	97.814	1	549	1	chr7A.!!$R2	548
4	TraesCS7B01G011500	chr3A	7250729	7251277	548	False	953	953	97.996	1	549	1	chr3A.!!$F1	548
5	TraesCS7B01G011500	chr2B	27524792	27525344	552	True	950	950	97.649	1	553	1	chr2B.!!$R1	552
6	TraesCS7B01G011500	chr2B	74695500	74696046	546	False	937	937	97.459	1	551	1	chr2B.!!$F1	550
7	TraesCS7B01G011500	chr3B	443350441	443350987	546	True	946	946	97.814	1	549	1	chr3B.!!$R2	548
8	TraesCS7B01G011500	chr3B	177496926	177497473	547	True	937	937	97.455	1	550	1	chr3B.!!$R1	549
9	TraesCS7B01G011500	chr6B	247053055	247053604	549	True	944	944	97.636	1	550	1	chr6B.!!$R1	549
10	TraesCS7B01G011500	chr5B	121689983	121690527	544	False	939	939	97.632	1	549	1	chr5B.!!$F1	548
11	TraesCS7B01G011500	chr5A	109294206	109294754	548	True	933	933	97.288	1	552	1	chr5A.!!$R1	551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
994	1039	0.750546	AAGATCGATCGACGGGGACA	60.751	55.0	22.06	0.0	42.82	4.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2861	2916	0.040646	ACCCTCCGTACAGGTCATCA	59.959	55.0	0.0	0.0	41.99	3.07	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
293	294	9.806448	TGGTGGCAAATATAATACACATAATCT	57.194	29.630	0.00	0.00	0.00	2.40
421	424	2.241176	GAGAGAGTGAGGAAGAGGGAGA	59.759	54.545	0.00	0.00	0.00	3.71
553	556	4.243270	CACGGGTGTTCTTCTAGTAAAGG	58.757	47.826	0.00	0.00	0.00	3.11
554	557	3.899980	ACGGGTGTTCTTCTAGTAAAGGT	59.100	43.478	0.00	0.00	0.00	3.50
555	558	4.346127	ACGGGTGTTCTTCTAGTAAAGGTT	59.654	41.667	0.00	0.00	0.00	3.50
556	559	5.539955	ACGGGTGTTCTTCTAGTAAAGGTTA	59.460	40.000	0.00	0.00	0.00	2.85
557	560	5.866092	CGGGTGTTCTTCTAGTAAAGGTTAC	59.134	44.000	0.00	0.00	0.00	2.50
558	561	6.517194	CGGGTGTTCTTCTAGTAAAGGTTACA	60.517	42.308	1.33	0.00	0.00	2.41
559	562	6.872547	GGGTGTTCTTCTAGTAAAGGTTACAG	59.127	42.308	1.33	0.00	0.00	2.74
560	563	7.256083	GGGTGTTCTTCTAGTAAAGGTTACAGA	60.256	40.741	1.33	0.31	0.00	3.41
561	564	8.312564	GGTGTTCTTCTAGTAAAGGTTACAGAT	58.687	37.037	1.33	0.00	0.00	2.90
562	565	9.141400	GTGTTCTTCTAGTAAAGGTTACAGATG	57.859	37.037	1.33	4.86	0.00	2.90
563	566	7.817962	TGTTCTTCTAGTAAAGGTTACAGATGC	59.182	37.037	1.33	0.00	0.00	3.91
564	567	7.719871	TCTTCTAGTAAAGGTTACAGATGCT	57.280	36.000	1.33	0.00	0.00	3.79
565	568	8.818622	TCTTCTAGTAAAGGTTACAGATGCTA	57.181	34.615	1.33	0.00	0.00	3.49
566	569	9.251440	TCTTCTAGTAAAGGTTACAGATGCTAA	57.749	33.333	1.33	0.00	0.00	3.09
567	570	9.871238	CTTCTAGTAAAGGTTACAGATGCTAAA	57.129	33.333	1.33	0.00	0.00	1.85
591	594	2.535934	TATGAAAACATTGCGTCGGC	57.464	45.000	0.00	0.00	40.52	5.54
610	613	1.001641	GGCCCACAGAGTCAGCATT	60.002	57.895	0.00	0.00	0.00	3.56
914	939	4.707448	AGGGCTCTCATCCACGTTATATAG	59.293	45.833	0.00	0.00	0.00	1.31
927	952	3.979495	CGTTATATAGACCTTCGTGCACC	59.021	47.826	12.15	0.00	0.00	5.01
964	989	1.579429	GCGAGCTAGAGCCTAGAGC	59.421	63.158	11.96	9.73	43.38	4.09
983	1013	1.200474	CGCGTACGTGCAAGATCGAT	61.200	55.000	16.78	0.00	34.15	3.59
994	1039	0.750546	AAGATCGATCGACGGGGACA	60.751	55.000	22.06	0.00	42.82	4.02
995	1040	1.008767	GATCGATCGACGGGGACAC	60.009	63.158	22.06	1.26	42.82	3.67
1018	1067	1.522355	ATGGCTCGGCGAATCACTG	60.522	57.895	12.13	0.00	0.00	3.66
1020	1069	2.125512	GCTCGGCGAATCACTGGT	60.126	61.111	12.13	0.00	0.00	4.00
1056	1105	1.965754	GCTTCATGCTCCTCCTCGGT	61.966	60.000	0.00	0.00	38.95	4.69
1064	1113	4.463879	CCTCCTCGGTGCCAGCAG	62.464	72.222	0.00	0.00	0.00	4.24
1080	1129	2.172534	CAGCTGCTTCTTCCTGCTG	58.827	57.895	0.00	6.00	44.72	4.41
1083	1132	1.303074	CTGCTTCTTCCTGCTGGCA	60.303	57.895	4.42	0.00	0.00	4.92
1084	1133	0.680280	CTGCTTCTTCCTGCTGGCAT	60.680	55.000	4.42	0.00	0.00	4.40
1089	1138	3.982316	CTTCCTGCTGGCATCCGCA	62.982	63.158	4.42	0.00	41.24	5.69
1093	1142	3.963687	CTGCTGGCATCCGCAGACA	62.964	63.158	19.22	0.00	46.09	3.41
1095	1144	2.513204	CTGGCATCCGCAGACAGG	60.513	66.667	0.00	0.00	41.24	4.00
1311	1360	3.256960	TCGCTGGGCCTCCCTTTT	61.257	61.111	4.53	0.00	45.70	2.27
1440	1489	1.295423	CCCGATCTGGAACAACGGT	59.705	57.895	0.00	0.00	43.77	4.83
1635	1684	1.373748	CCCCAACGTCGTCGACAAT	60.374	57.895	24.13	9.58	40.62	2.71
2179	2228	0.942962	CGGCAGGAGAATGAAGATGC	59.057	55.000	0.00	0.00	0.00	3.91
2274	2323	2.775911	AGCCCTTTACCTTTCGGTAC	57.224	50.000	0.00	0.00	45.29	3.34
2277	2326	2.289882	GCCCTTTACCTTTCGGTACTGT	60.290	50.000	0.64	0.00	45.29	3.55
2338	2387	1.106944	CCAGCCCAGTGTCCGTTTTT	61.107	55.000	0.00	0.00	0.00	1.94
2450	2499	9.729281	AAATTTGCATCATTATCTTTTGAACCT	57.271	25.926	0.00	0.00	0.00	3.50
2485	2534	8.795842	ATTTATGACCCGTTTGTAAAGTATCA	57.204	30.769	0.00	0.00	0.00	2.15
2490	2539	4.157105	ACCCGTTTGTAAAGTATCAATGCC	59.843	41.667	0.00	0.00	0.00	4.40
2510	2559	4.177026	GCCATCTCGCTATACAACTATGG	58.823	47.826	0.00	0.00	36.53	2.74
2575	2624	2.592861	GACATGGATGCGGGAGGC	60.593	66.667	0.00	0.00	43.96	4.70
2576	2625	3.092511	ACATGGATGCGGGAGGCT	61.093	61.111	0.00	0.00	44.05	4.58
2602	2657	2.939103	GCTCCTCGCATACATTTCAACT	59.061	45.455	0.00	0.00	38.92	3.16
2604	2659	4.025647	GCTCCTCGCATACATTTCAACTAC	60.026	45.833	0.00	0.00	38.92	2.73
2609	2664	6.258727	CCTCGCATACATTTCAACTACAATCT	59.741	38.462	0.00	0.00	0.00	2.40
2630	2685	4.391830	TCTGAATCAAAGGGACGAAATTCG	59.608	41.667	14.35	14.35	46.93	3.34
2688	2743	8.291740	ACATAATTTACACAAAAAGGTCGGTAC	58.708	33.333	0.00	0.00	0.00	3.34
2741	2796	4.391405	AAACCTAAACCCTATACGGACG	57.609	45.455	0.00	0.00	33.16	4.79
2742	2797	3.297134	ACCTAAACCCTATACGGACGA	57.703	47.619	0.00	0.00	33.16	4.20
2743	2798	2.952310	ACCTAAACCCTATACGGACGAC	59.048	50.000	0.00	0.00	33.16	4.34
2745	2800	1.851304	AAACCCTATACGGACGACCA	58.149	50.000	4.48	0.00	35.59	4.02
2746	2801	2.077687	AACCCTATACGGACGACCAT	57.922	50.000	4.48	0.00	35.59	3.55
2756	2811	0.389948	GGACGACCATCGAACTGCTT	60.390	55.000	5.04	0.00	43.74	3.91
2760	2815	1.160137	GACCATCGAACTGCTTTGCT	58.840	50.000	0.00	0.00	0.00	3.91
2761	2816	0.877071	ACCATCGAACTGCTTTGCTG	59.123	50.000	0.00	0.00	0.00	4.41
2762	2817	0.455633	CCATCGAACTGCTTTGCTGC	60.456	55.000	0.00	0.00	0.00	5.25
2771	2826	4.389576	CTTTGCTGCACCGCCGTC	62.390	66.667	0.00	0.00	0.00	4.79
2786	2841	1.206745	CCGTCGCCATATGTGTCGTC	61.207	60.000	1.24	0.16	34.82	4.20
2787	2842	1.529065	CGTCGCCATATGTGTCGTCG	61.529	60.000	1.24	7.95	32.54	5.12
2788	2843	0.524816	GTCGCCATATGTGTCGTCGT	60.525	55.000	1.24	0.00	0.00	4.34
2789	2844	0.248336	TCGCCATATGTGTCGTCGTC	60.248	55.000	1.24	0.00	0.00	4.20
2790	2845	1.529065	CGCCATATGTGTCGTCGTCG	61.529	60.000	1.24	0.00	38.55	5.12
2816	2871	1.221840	CCTCCAGCAGCGGTACAAT	59.778	57.895	0.00	0.00	0.00	2.71
2847	2902	2.113986	GGCAGCCTTGTCTGGTGT	59.886	61.111	3.29	0.00	34.74	4.16
2855	2910	1.003580	CCTTGTCTGGTGTATGCCTGT	59.996	52.381	0.00	0.00	0.00	4.00
2861	2916	1.257750	TGGTGTATGCCTGTCGCTCT	61.258	55.000	0.00	0.00	38.78	4.09
2862	2917	0.807667	GGTGTATGCCTGTCGCTCTG	60.808	60.000	0.00	0.00	38.78	3.35
2863	2918	0.173481	GTGTATGCCTGTCGCTCTGA	59.827	55.000	0.00	0.00	38.78	3.27
2864	2919	1.114627	TGTATGCCTGTCGCTCTGAT	58.885	50.000	0.00	0.00	38.78	2.90
2865	2920	1.202452	TGTATGCCTGTCGCTCTGATG	60.202	52.381	0.00	0.00	38.78	3.07
2866	2921	1.067669	GTATGCCTGTCGCTCTGATGA	59.932	52.381	0.00	0.00	38.78	2.92
2867	2922	0.179089	ATGCCTGTCGCTCTGATGAC	60.179	55.000	3.90	3.90	38.78	3.06
2880	2957	0.040646	TGATGACCTGTACGGAGGGT	59.959	55.000	2.31	1.15	37.45	4.34
2895	2977	3.116531	GGTTACCGCGGACACTGC	61.117	66.667	35.90	14.65	0.00	4.40
2897	2979	3.617735	TTACCGCGGACACTGCCA	61.618	61.111	35.90	2.48	0.00	4.92
3022	3104	3.744719	CCTGGCGAACGTCTCCGA	61.745	66.667	8.76	0.00	37.88	4.55
3023	3105	2.202492	CTGGCGAACGTCTCCGAG	60.202	66.667	8.76	0.00	37.88	4.63
3040	3122	2.227089	GAGATGGTGACGGAGCGGTT	62.227	60.000	0.00	0.00	0.00	4.44
3074	3159	3.000819	AGGTCCGGGTCATTGCGA	61.001	61.111	0.00	0.00	0.00	5.10
3083	3168	0.455815	GGTCATTGCGAACCCATTCC	59.544	55.000	0.00	0.00	0.00	3.01
3108	3193	3.411351	CGTCCGACTTGGCCAACG	61.411	66.667	16.05	17.74	37.80	4.10

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
211	212	1.675714	CCACAGCTCCAAGAATACGCA	60.676	52.381	0.00	0.00	0.00	5.24
421	424	2.073252	TCCTCACACACACTCTCTGT	57.927	50.000	0.00	0.00	0.00	3.41
506	509	0.808755	CAACGGGGCCACATTAACTC	59.191	55.000	5.46	0.00	0.00	3.01
567	570	5.164002	GCCGACGCAATGTTTTCATATTTTT	60.164	36.000	0.00	0.00	39.94	1.94
568	571	4.326009	GCCGACGCAATGTTTTCATATTTT	59.674	37.500	0.00	0.00	39.94	1.82
569	572	3.857093	GCCGACGCAATGTTTTCATATTT	59.143	39.130	0.00	0.00	39.94	1.40
570	573	3.434637	GCCGACGCAATGTTTTCATATT	58.565	40.909	0.00	0.00	39.94	1.28
571	574	2.538737	CGCCGACGCAATGTTTTCATAT	60.539	45.455	0.00	0.00	39.94	1.78
572	575	1.201976	CGCCGACGCAATGTTTTCATA	60.202	47.619	0.00	0.00	39.94	2.15
573	576	0.454285	CGCCGACGCAATGTTTTCAT	60.454	50.000	0.00	0.00	43.05	2.57
574	577	1.082431	CGCCGACGCAATGTTTTCA	60.082	52.632	0.00	0.00	34.03	2.69
575	578	1.795962	CCGCCGACGCAATGTTTTC	60.796	57.895	0.00	0.00	38.22	2.29
591	594	2.809861	AATGCTGACTCTGTGGGCCG	62.810	60.000	0.00	0.00	0.00	6.13
599	602	1.010935	CGCGTGTGAATGCTGACTCT	61.011	55.000	0.00	0.00	0.00	3.24
628	631	2.649975	GTACGTGACGCGCGCTAT	60.650	61.111	32.58	17.70	46.11	2.97
660	666	1.227527	ATCGGCGCGATTCAATGGA	60.228	52.632	12.10	0.00	44.59	3.41
889	914	1.568504	AACGTGGATGAGAGCCCTTA	58.431	50.000	0.00	0.00	0.00	2.69
891	916	1.794714	ATAACGTGGATGAGAGCCCT	58.205	50.000	0.00	0.00	0.00	5.19
958	983	1.464429	CTTGCACGTACGCGCTCTAG	61.464	60.000	26.54	17.28	42.83	2.43
959	984	1.513373	CTTGCACGTACGCGCTCTA	60.513	57.895	26.54	12.56	42.83	2.43
961	986	2.067453	GATCTTGCACGTACGCGCTC	62.067	60.000	26.54	13.56	42.83	5.03
962	987	2.126071	ATCTTGCACGTACGCGCT	60.126	55.556	26.54	5.90	42.83	5.92
963	988	2.316687	GATCTTGCACGTACGCGC	59.683	61.111	20.78	20.78	42.83	6.86
964	989	1.200474	ATCGATCTTGCACGTACGCG	61.200	55.000	16.72	3.53	44.93	6.01
968	993	1.593793	CGTCGATCGATCTTGCACGTA	60.594	52.381	22.50	0.00	42.86	3.57
969	994	0.861866	CGTCGATCGATCTTGCACGT	60.862	55.000	22.50	0.00	42.86	4.49
1039	1088	1.900351	CACCGAGGAGGAGCATGAA	59.100	57.895	0.00	0.00	45.00	2.57
1063	1112	1.002379	CCAGCAGGAAGAAGCAGCT	60.002	57.895	0.00	0.00	36.89	4.24
1064	1113	2.698763	GCCAGCAGGAAGAAGCAGC	61.699	63.158	0.00	0.00	36.89	5.25
1065	1114	0.680280	ATGCCAGCAGGAAGAAGCAG	60.680	55.000	0.00	0.00	36.89	4.24
1069	1118	1.078214	CGGATGCCAGCAGGAAGAA	60.078	57.895	0.00	0.00	36.89	2.52
1080	1129	3.785859	TCCCTGTCTGCGGATGCC	61.786	66.667	0.00	0.00	41.78	4.40
1083	1132	3.461773	CCGTCCCTGTCTGCGGAT	61.462	66.667	0.00	0.00	46.33	4.18
1299	1348	1.000486	GGGAAGAAAAGGGAGGCCC	60.000	63.158	0.00	0.00	45.90	5.80
1311	1360	2.203938	AGCTTGGACGGGGGAAGA	60.204	61.111	0.00	0.00	0.00	2.87
1440	1489	2.281692	AGCTGCACGTTGATGGCA	60.282	55.556	1.02	0.00	35.96	4.92
2120	2169	3.813724	GGATGGGAGGGTGGCAGG	61.814	72.222	0.00	0.00	0.00	4.85
2175	2224	0.098728	CATCACGTTTTCCCCGCATC	59.901	55.000	0.00	0.00	0.00	3.91
2179	2228	2.809696	ACTAAACATCACGTTTTCCCCG	59.190	45.455	0.00	0.00	45.79	5.73
2199	2248	3.057033	TCGGAAGCCTCAAACTACTACAC	60.057	47.826	0.00	0.00	0.00	2.90
2200	2249	3.159472	TCGGAAGCCTCAAACTACTACA	58.841	45.455	0.00	0.00	0.00	2.74
2274	2323	6.459848	GGCTACACCTACACATAAGAGTACAG	60.460	46.154	0.00	0.00	34.51	2.74
2277	2326	4.577693	CGGCTACACCTACACATAAGAGTA	59.422	45.833	0.00	0.00	35.61	2.59
2338	2387	8.780846	AAAATTTCAGCAAAAGCATATGATGA	57.219	26.923	6.97	0.32	39.93	2.92
2360	2409	6.014840	AGGTTCTAGGTTGTAGTCGATGAAAA	60.015	38.462	0.00	0.00	0.00	2.29
2367	2416	5.535333	TGAAAAGGTTCTAGGTTGTAGTCG	58.465	41.667	0.00	0.00	34.60	4.18
2450	2499	3.009695	ACGGGTCATAAATCCAACCTTGA	59.990	43.478	0.00	0.00	32.22	3.02
2485	2534	4.342862	AGTTGTATAGCGAGATGGCATT	57.657	40.909	0.00	0.00	34.64	3.56
2490	2539	6.502136	TCTCCATAGTTGTATAGCGAGATG	57.498	41.667	0.00	0.00	0.00	2.90
2510	2559	0.806492	GGTCGCGGTTGGAGATTCTC	60.806	60.000	6.13	5.03	0.00	2.87
2563	2612	2.514824	GTTGAGCCTCCCGCATCC	60.515	66.667	0.00	0.00	41.38	3.51
2602	2657	5.414789	TCGTCCCTTTGATTCAGATTGTA	57.585	39.130	0.00	0.00	0.00	2.41
2604	2659	5.627499	TTTCGTCCCTTTGATTCAGATTG	57.373	39.130	0.00	0.00	0.00	2.67
2609	2664	4.678509	CGAATTTCGTCCCTTTGATTCA	57.321	40.909	10.61	0.00	34.72	2.57
2630	2685	9.887406	TTTTAATGAAATCCGTCTAGTTTGAAC	57.113	29.630	0.00	0.00	0.00	3.18
2722	2777	2.952310	GTCGTCCGTATAGGGTTTAGGT	59.048	50.000	11.15	0.00	41.52	3.08
2731	2786	2.547211	AGTTCGATGGTCGTCCGTATAG	59.453	50.000	0.00	0.00	41.35	1.31
2737	2792	0.389948	AAGCAGTTCGATGGTCGTCC	60.390	55.000	0.00	0.00	41.35	4.79
2739	2794	1.148310	CAAAGCAGTTCGATGGTCGT	58.852	50.000	0.00	0.00	41.35	4.34
2740	2795	0.179215	GCAAAGCAGTTCGATGGTCG	60.179	55.000	0.00	0.00	42.10	4.79
2741	2796	1.135859	CAGCAAAGCAGTTCGATGGTC	60.136	52.381	0.00	0.00	0.00	4.02
2742	2797	0.877071	CAGCAAAGCAGTTCGATGGT	59.123	50.000	0.00	0.00	0.00	3.55
2743	2798	0.455633	GCAGCAAAGCAGTTCGATGG	60.456	55.000	0.00	0.00	0.00	3.51
2745	2800	0.239347	GTGCAGCAAAGCAGTTCGAT	59.761	50.000	0.00	0.00	46.69	3.59
2746	2801	1.648720	GTGCAGCAAAGCAGTTCGA	59.351	52.632	0.00	0.00	46.69	3.71
2762	2817	3.337889	CATATGGCGACGGCGGTG	61.338	66.667	15.06	11.01	41.24	4.94
2777	2832	2.501222	GACGCGACGACGACACAT	60.501	61.111	15.93	0.00	42.66	3.21
2778	2833	4.999532	CGACGCGACGACGACACA	63.000	66.667	25.89	0.00	46.01	3.72
2787	2842	4.477975	CTGGAGGGACGACGCGAC	62.478	72.222	15.93	5.54	0.00	5.19
2790	2845	4.803426	CTGCTGGAGGGACGACGC	62.803	72.222	0.00	0.00	0.00	5.19
2831	2886	1.089920	CATACACCAGACAAGGCTGC	58.910	55.000	0.00	0.00	34.56	5.25
2855	2910	0.733150	CGTACAGGTCATCAGAGCGA	59.267	55.000	0.00	0.00	46.62	4.93
2861	2916	0.040646	ACCCTCCGTACAGGTCATCA	59.959	55.000	0.00	0.00	41.99	3.07
2862	2917	1.192428	AACCCTCCGTACAGGTCATC	58.808	55.000	0.00	0.00	41.99	2.92
2863	2918	2.105766	GTAACCCTCCGTACAGGTCAT	58.894	52.381	0.00	0.00	41.99	3.06
2864	2919	1.549203	GTAACCCTCCGTACAGGTCA	58.451	55.000	0.00	0.00	41.99	4.02
2865	2920	0.820226	GGTAACCCTCCGTACAGGTC	59.180	60.000	0.00	0.00	41.99	3.85
2866	2921	0.967380	CGGTAACCCTCCGTACAGGT	60.967	60.000	0.00	0.00	42.62	4.00
2867	2922	1.811860	CGGTAACCCTCCGTACAGG	59.188	63.158	0.00	0.00	42.62	4.00
2880	2957	2.457743	ATTGGCAGTGTCCGCGGTAA	62.458	55.000	27.15	12.10	0.00	2.85
2961	3043	2.401195	GCCAAGATCGACAAGCGC	59.599	61.111	0.00	0.00	40.61	5.92
3022	3104	2.283529	AACCGCTCCGTCACCATCT	61.284	57.895	0.00	0.00	0.00	2.90
3023	3105	2.100631	CAACCGCTCCGTCACCATC	61.101	63.158	0.00	0.00	0.00	3.51
3062	3147	1.312371	AATGGGTTCGCAATGACCCG	61.312	55.000	7.04	0.00	39.47	5.28
3066	3151	1.029408	CCGGAATGGGTTCGCAATGA	61.029	55.000	0.00	0.00	35.10	2.57
3068	3153	2.414785	GCCGGAATGGGTTCGCAAT	61.415	57.895	5.05	0.00	38.63	3.56

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.